Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 30 of 444
Found at i:7419855 original size:93 final size:90
Alignment explanation
Indices: 7419743--7419973 Score: 304
Period size: 93 Copynumber: 2.5 Consensus size: 90
7419733 TAAAAAAGGT
* *
7419743 GAATAAAATCTATTTTGGGTTTATTCCCGTCGTTCAACGGATTTTATTCCGATTTTGATTTTTAT
1 GAATAAAATCTGTTTTGGGTTTATTCCCGCCGTTCAACGGATTTTATTCCGATTTTGATTTTTAT
7419808 TTCCAAAAACAAGTTTTTTTTTAAATTA
66 TTCCAAAAACAAG---TTTTTTAAATTA
* * * * *
7419836 GAATAAAATTTGTTTTGGGTTTATTCCCACCATTCAATGGATTTTATTCTGATTTTGATTTTTAT
1 GAATAAAATCTGTTTTGGGTTTATTCCCGCCGTTCAACGGATTTTATTCCGATTTTGATTTTTAT
*
7419901 TTCCAAAAATAAGTTTTTTAAATTA
66 TTCCAAAAACAAGTTTTTTAAATTA
* * *
7419926 GAATAAAGTCTGTTTCGAGATTTATT-CCGCCGTT-AAGCGGATTTTATT
1 GAATAAAATCTGTTTTG-GGTTTATTCCCGCCGTTCAA-CGGATTTTATT
7419974 TCTTTTTTAT
Statistics
Matches: 121, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
89 2 0.02
90 42 0.35
91 7 0.06
93 70 0.58
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.46
Consensus pattern (90 bp):
GAATAAAATCTGTTTTGGGTTTATTCCCGCCGTTCAACGGATTTTATTCCGATTTTGATTTTTAT
TTCCAAAAACAAGTTTTTTAAATTA
Found at i:7422108 original size:32 final size:34
Alignment explanation
Indices: 7422072--7422135 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
7422062 TAAGCAGTAA
*
7422072 ACAGT-CAAAT-GCAGTCTGGGCCTAAGCCCATT
1 ACAGTCCAAATAGCAGTCTAGGCCTAAGCCCATT
* *
7422104 ACAGTCCAAATAGCAGTTTAGGCCTTAGCCCA
1 ACAGTCCAAATAGCAGTCTAGGCCTAAGCCCA
7422136 ACTCAGTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 5 0.19
33 5 0.19
34 17 0.63
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (34 bp):
ACAGTCCAAATAGCAGTCTAGGCCTAAGCCCATT
Found at i:7425234 original size:30 final size:30
Alignment explanation
Indices: 7425200--7425259 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
7425190 AAACATCTTT
7425200 ACTTTCCCTCTAAAACTTTTACTCCCTTCC
1 ACTTTCCCTCTAAAACTTTTACTCCCTTCC
* *
7425230 ACTTTTCCTCTAAAACTTTTACTCTCTTCC
1 ACTTTCCCTCTAAAACTTTTACTCCCTTCC
7425260 CATCTCACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (30 bp):
ACTTTCCCTCTAAAACTTTTACTCCCTTCC
Found at i:7430676 original size:20 final size:22
Alignment explanation
Indices: 7430653--7430695 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7430643 ATCAAAAGAA
7430653 TGAAAT-AAT-ATAAAACAATT
1 TGAAATAAATGATAAAACAATT
*
7430673 TGAAATAAATGATTAAACAATT
1 TGAAATAAATGATAAAACAATT
7430695 T
1 T
7430696 TAACTAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (22 bp):
TGAAATAAATGATAAAACAATT
Found at i:7430893 original size:26 final size:25
Alignment explanation
Indices: 7430864--7431018 Score: 98
Period size: 26 Copynumber: 6.0 Consensus size: 25
7430854 TAAAAAGGTC
7430864 TAAAATAAATAATATATATATAATAT
1 TAAAATAAATAATATATATATAAT-T
* * *
7430890 TAAAGTAAATAATATACACAATAATT
1 TAAAATAAATAATATATA-TATAATT
* * *
7430916 TAAAATACAAAAATGTATATAAAAGTT
1 TAAAATA-AATAATATATATATAA-TT
* * *
7430943 TCAAAATAAACAATATGTATAATAGTT
1 T-AAAATAAATAATATATAT-ATAATT
* * * *
7430970 TAAAAGAAATAACATATGTA-AA-A
1 TAAAATAAATAATATATATATAATT
*
7430993 TAAAATAAATTAAAATATATGATAAT
1 TAAAATAAA-TAATATATAT-ATAAT
7431019 AATAATGGTA
Statistics
Matches: 96, Mismatches: 24, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
23 8 0.08
24 9 0.09
25 2 0.02
26 41 0.43
27 28 0.29
28 8 0.08
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (25 bp):
TAAAATAAATAATATATATATAATT
Found at i:7431058 original size:21 final size:20
Alignment explanation
Indices: 7431034--7431083 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
7431024 TGGTAATAAT
7431034 AATATAAATAAATACAAAAAA
1 AATATAAATAAA-ACAAAAAA
* **
7431055 AATATACAATATAACAAAACC
1 AATATA-AATAAAACAAAAAA
7431076 AATATAAA
1 AATATAAA
7431084 GTTACCTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
AATATAAATAAAACAAAAAA
Found at i:7431187 original size:60 final size:60
Alignment explanation
Indices: 7431123--7431246 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
7431113 AATAGTAATA
*
7431123 ATATAATAATAATAAAGTAGAGACTAATGATGACAATACATTAATGAGAATAATGATAGC
1 ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
*
7431183 ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTGATGAGAATAATGATAGC
1 ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
7431243 ATAT
1 ATAT
7431247 TGATAATGAC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.52, C:0.06, G:0.15, T:0.27
Consensus pattern (60 bp):
ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
Found at i:7432925 original size:13 final size:13
Alignment explanation
Indices: 7432907--7432931 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7432897 GAATTTTGAG
7432907 TTCTTCGATCTGC
1 TTCTTCGATCTGC
7432920 TTCTTCGATCTG
1 TTCTTCGATCTG
7432932 TTCACAGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTTCGATCTGC
Found at i:7433026 original size:44 final size:44
Alignment explanation
Indices: 7432954--7433078 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
7432944 CCATGCTGAA
* * * *
7432954 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAAATCTGCT
1 ATCTTCGATTTG-TTCCCTATAAGCACAGGAATGCCAAATCTGCT
* *
7432999 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCT
1 ATCTTCGATTTGTTCCCTATAAGCACAGGAATGCCAAATCTGCT
* * *
7433043 AT-TTCCAACTTGTTCCCTATAAGCACAGGGATGCCA
1 ATCTT-CGATTTGTTCCCTATAAGCACAGGAATGCCA
7433079 TGCTGATCTC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
43 2 0.03
44 57 0.81
45 11 0.16
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTTCGATTTGTTCCCTATAAGCACAGGAATGCCAAATCTGCT
Found at i:7433527 original size:205 final size:203
Alignment explanation
Indices: 7433167--7433694 Score: 752
Period size: 205 Copynumber: 2.6 Consensus size: 203
7433157 ATCCGAAAGT
* * * *
7433167 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATTTTG
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGA-TCTG
* * * * * *
7433232 CTTCAGTATAAAAATCTGAAGATTAGATCTGCTATGTATCTGCTCTCCATTGAAATGGAGATGCC
65 CTTCAG-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCA-TCAAATGAAGATGCC
* * * * * *
7433297 AGACTTCGATTTGTTCTCTGACAATACAGAGACGATAAATCATCTTAGATTTGTTTCAACGTAAA
128 AAACTCCGATTCGTTCTCCGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAA
7433362 CACGTGAAAAC
193 CACGTGAAAAC
* *
7433373 CAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGGATTCCAAACCATCTTGGATCTGC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGC
* *
7433438 TTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCA
66 TTCAG-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAA-TGAAGATGCCA
* *
7433503 AACTCCGATTCGTTCTCCGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATC
129 AACTCCGATTCGTTCTCCGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAAC
*
7433568 ACGTGAAAGC
194 ACGTGAAAAC
* *
7433578 CAAATCAACTATGTCTTCGATTTGTTCCTTGTAAACACAAAGATGCCAAACCATCTTGGATCTGC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGC
*
7433643 TTCAG-TGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCTATCAA
66 TTCAGAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAA
7433695 TGTAACACCC
Statistics
Matches: 288, Mismatches: 31, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
203 1 0.00
204 7 0.02
205 225 0.78
206 55 0.19
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (203 bp):
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGC
TTCAGATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAATGAAGATGCCAAA
CTCCGATTCGTTCTCCGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAAC
Found at i:7434441 original size:38 final size:38
Alignment explanation
Indices: 7434382--7434489 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
7434372 TCAATCATGC
*
7434382 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
7434421 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
7434459 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
7434490 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 55 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:7434447 original size:31 final size:31
Alignment explanation
Indices: 7434405--7434506 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
7434395 CCTTTTCATA
7434405 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
7434442 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
7434474 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
7434505 TT
1 TT
7434507 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:7434743 original size:24 final size:24
Alignment explanation
Indices: 7434697--7434815 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
7434687 GCTTTATCAT
*
7434697 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
7434722 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
7434746 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
7434769 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
*
7434793 ACAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
7434816 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 24 0.29
24 47 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:7434776 original size:47 final size:48
Alignment explanation
Indices: 7434697--7434815 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
7434687 GCTTTATCAT
*
7434697 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
7434746 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
7434793 ACAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
7434816 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 2 0.03
47 42 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:7434891 original size:20 final size:20
Alignment explanation
Indices: 7434866--7434925 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
7434856 TATGATTACC
7434866 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
7434886 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
7434906 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
7434926 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:7434896 original size:11 final size:11
Alignment explanation
Indices: 7434866--7434920 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
7434856 TATGATTACC
7434866 TCATGTGCATA
1 TCATGTGCATA
*
7434877 TCA--TACATA
1 TCATGTGCATA
7434886 TCATGTGCATA
1 TCATGTGCATA
* *
7434897 TCA--TACATT
1 TCATGTGCATA
7434906 TCATGTGCATA
1 TCATGTGCATA
7434917 TCAT
1 TCAT
7434921 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:7435000 original size:25 final size:25
Alignment explanation
Indices: 7434968--7435015 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7434958 ATACATAAAC
* * *
7434968 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
7434993 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
7435016 CATGGTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:7445105 original size:13 final size:15
Alignment explanation
Indices: 7445075--7445105 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7445065 TTCCAGATTT
7445075 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
7445090 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
7445105 T
1 T
7445106 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:7448864 original size:20 final size:22
Alignment explanation
Indices: 7448841--7448883 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7448831 ATCAAAAGAA
7448841 TGAAAT-AAT-ATAAAACAATT
1 TGAAATAAATGATAAAACAATT
*
7448861 TGAAATAAATGATTAAACAATT
1 TGAAATAAATGATAAAACAATT
7448883 T
1 T
7448884 TGACTAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.33
Consensus pattern (22 bp):
TGAAATAAATGATAAAACAATT
Found at i:7449123 original size:27 final size:26
Alignment explanation
Indices: 7449052--7449204 Score: 111
Period size: 24 Copynumber: 6.0 Consensus size: 26
7449042 TAAAAAGGTC
7449052 TAAAATAAATAATATATATAAT-A-T
1 TAAAATAAATAATATATATAATAATT
* *
7449076 TAAAGTAAATAATATACATAATAATT
1 TAAAATAAATAATATATATAATAATT
* *
7449102 TAAAATACAAAAATGTATATAA-AAGTT
1 TAAAATA-AATAATATATATAATAA-TT
** * *
7449129 TCAAAATAACCAATATGTATAATAGTT
1 T-AAAATAAATAATATATATAATAATT
* * *
7449156 TAAAAGAAATAACATATGTAA-AA--
1 TAAAATAAATAATATATATAATAATT
* *
7449179 TAAAATAATATAAAATATATGATAAT
1 TAAAATAA-ATAATATATATAATAAT
7449205 AATAATGGTA
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
23 7 0.07
24 30 0.31
25 4 0.04
26 23 0.23
27 27 0.28
28 7 0.07
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (26 bp):
TAAAATAAATAATATATATAATAATT
Found at i:7449244 original size:21 final size:20
Alignment explanation
Indices: 7449220--7449269 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
7449210 TGGTAATAAT
7449220 AATATAAATAAATACAAAAAA
1 AATATAAATAAA-ACAAAAAA
* **
7449241 AATATACAATATAACAAAACC
1 AATATA-AATAAAACAAAAAA
7449262 AATATAAA
1 AATATAAA
7449270 GTTACCTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
AATATAAATAAAACAAAAAA
Found at i:7449373 original size:60 final size:60
Alignment explanation
Indices: 7449309--7449432 Score: 221
Period size: 60 Copynumber: 2.1 Consensus size: 60
7449299 AATAGTAATA
*
7449309 ATATAATAATAATAAAGTAGAGACTAATGATGACAATACATTAATGAGAATAATGATAGC
1 ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
* *
7449369 ATATAATAATAATAAAGTAGAAATTAATGATGACAATACATTGATGAGAATAATGATAGC
1 ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
7449429 ATAT
1 ATAT
7449433 TGATAATGAC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.52, C:0.06, G:0.15, T:0.28
Consensus pattern (60 bp):
ATATAATAATAATAAAGTAGAAACTAATGATGACAATACATTAATGAGAATAATGATAGC
Found at i:7450443 original size:18 final size:19
Alignment explanation
Indices: 7450416--7450451 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7450406 AAAAAAAAGA
7450416 AAATACAAAAGAAAAAAAT
1 AAATACAAAAGAAAAAAAT
*
7450435 AAATA-AAAATAAAAAAA
1 AAATACAAAAGAAAAAAA
7450452 ATCAAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (19 bp):
AAATACAAAAGAAAAAAAT
Found at i:7451450 original size:16 final size:18
Alignment explanation
Indices: 7451417--7451452 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
7451407 TATGTGTTAT
7451417 AAATAGCATAATATATAA
1 AAATAGCATAATATATAA
7451435 AAATAGCA-AA-ATATAA
1 AAATAGCATAATATATAA
7451451 AA
1 AA
7451453 CATTACAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 2 0.11
18 8 0.44
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (18 bp):
AAATAGCATAATATATAA
Found at i:7457059 original size:21 final size:21
Alignment explanation
Indices: 7457035--7457078 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7457025 TTTTTATAAG
7457035 TTTTTAAAAATA-TATAAAAT
1 TTTTTAAAAATATTATAAAAT
* *
7457055 TTTTTATAAATATTTTAAAAT
1 TTTTTAAAAATATTATAAAAT
7457076 TTT
1 TTT
7457079 AAAATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTTAAAAATATTATAAAAT
Found at i:7457075 original size:30 final size:29
Alignment explanation
Indices: 7457025--7457083 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
7457015 TTTTTTAGAA
*
7457025 TTTTTATAAGTTTTTAAAAATATATAAAAT
1 TTTTTATAAATTTTTAAAAAT-TATAAAAT
*
7457055 TTTTTATAAATATTTT-AAAATTTTAAAAT
1 TTTTTATAAAT-TTTTAAAAATTATAAAAT
7457084 AATTATGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 15 0.58
31 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
TTTTTATAAATTTTTAAAAATTATAAAAT
Found at i:7461784 original size:19 final size:19
Alignment explanation
Indices: 7461760--7461815 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
7461750 AAAAAAAGCA
*
7461760 TTAATAGTTATTATAATGT
1 TTAATATTTATTATAATGT
*
7461779 TTAATATTTATT-TATATTT
1 TTAATATTTATTATA-ATGT
7461798 TTAATATTTATTTATAAT
1 TTAATATTTA-TTATAAT
7461816 ATTCTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 2 0.06
19 24 0.75
20 4 0.12
21 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TTAATATTTATTATAATGT
Found at i:7462592 original size:2 final size:2
Alignment explanation
Indices: 7462585--7462646 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
7462575 TAAGCCCCTA
*
7462585 CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
7462627 CT CT CT CT CT CT CT TT CT CT
1 CT CT CT CT CT CT CT CT CT CT
7462647 TTGCACTCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7462828 original size:27 final size:29
Alignment explanation
Indices: 7462798--7462855 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 29
7462788 TTTATAATTC
7462798 TTTTATAATTTTAAATAAAA-TTAA-AAT
1 TTTTATAATTTTAAATAAAATTTAATAAT
* * * *
7462825 TTTTTTTATTTTTATTAAAATTTAATAAT
1 TTTTATAATTTTAAATAAAATTTAATAAT
7462854 TT
1 TT
7462856 ATCTAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 16 0.64
28 4 0.16
29 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTATAATTTTAAATAAAATTTAATAAT
Found at i:7463018 original size:96 final size:96
Alignment explanation
Indices: 7462916--7463099 Score: 289
Period size: 96 Copynumber: 1.9 Consensus size: 96
7462906 ATAAGAGCAA
*
7462916 GGGCTTAAATGCTTTTTTGAAAAATTTTGAGGG-TCTTTTCGATACATTTTGAAAGTTCAAGTAC
1 GGGCTTAAATGCTTTTTTGAAAAAGTTTGAGGGCT-TTTTCGATACATTTTGAAAGTTCAAGTAC
7462980 TCAATTGAGTGCAAAAAAAAAAAGAAGAAAGG
65 TCAATTGAGTGCAAAAAAAAAAAGAAGAAAGG
* * * * * *
7463012 GGGCTTAATTGCTTTTTTTAAGAAGTTTGAGGGCTTTTTTGATACATTTTGAAAGTTTAAGTGCT
1 GGGCTTAAATGCTTTTTTGAAAAAGTTTGAGGGCTTTTTCGATACATTTTGAAAGTTCAAGTACT
7463077 CAATTGAGTGCAAAAAAAAAAAG
66 CAATTGAGTGCAAAAAAAAAAAG
7463100 GATGAGCTTA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 79 0.99
97 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (96 bp):
GGGCTTAAATGCTTTTTTGAAAAAGTTTGAGGGCTTTTTCGATACATTTTGAAAGTTCAAGTACT
CAATTGAGTGCAAAAAAAAAAAGAAGAAAGG
Found at i:7463327 original size:10 final size:11
Alignment explanation
Indices: 7463315--7463362 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
7463305 TAAAAGTTAT
7463315 AAATATTATTA
1 AAATATTATTA
*
7463326 AAATTTTATTA
1 AAATATTATTA
* *
7463337 AAAAATATATTG
1 AAATAT-TATTA
7463349 AAAT-TTATTA
1 AAATATTATTA
7463359 AAAT
1 AAAT
7463363 TAGAAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
10 8 0.27
11 15 0.50
12 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
AAATATTATTA
Found at i:7463358 original size:22 final size:24
Alignment explanation
Indices: 7463315--7463361 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
7463305 TAAAAGTTAT
7463315 AAATATTATTAAAATTTTATTAAA
1 AAATATTATTAAAATTTTATTAAA
*
7463339 AAATA-TATTGAAA-TTTATTAAA
1 AAATATTATTAAAATTTTATTAAA
7463361 A
1 A
7463362 TTAGAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 7 0.32
24 5 0.23
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATATTATTAAAATTTTATTAAA
Found at i:7463560 original size:17 final size:16
Alignment explanation
Indices: 7463534--7463567 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
7463524 ACTTGTGCCG
7463534 AAAAATAATAAAAATT
1 AAAAATAATAAAAATT
7463550 AAAAATCAATAAAAATT
1 AAAAAT-AATAAAAATT
7463567 A
1 A
7463568 TAGAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATAATAAAAATT
Found at i:7463619 original size:10 final size:10
Alignment explanation
Indices: 7463600--7463687 Score: 55
Period size: 10 Copynumber: 9.3 Consensus size: 10
7463590 TTTTGGTACA
7463600 ATAA-TTTTT
1 ATAATTTTTT
7463609 ATAATTTTTT
1 ATAATTTTTT
* *
7463619 ACAA--ATTT
1 ATAATTTTTT
7463627 AT-ATTTCTTT
1 ATAATTT-TTT
7463637 AT-ATTTTTT
1 ATAATTTTTT
7463646 ATAATTTTCTT
1 ATAATTTT-TT
* *
7463657 ACAA--CTTT
1 ATAATTTTTT
**
7463665 ATAAAATTTT
1 ATAATTTTTT
7463675 ATAATTTTTT
1 ATAATTTTTT
7463685 ATA
1 ATA
7463688 TTTCTATATA
Statistics
Matches: 61, Mismatches: 10, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
7 1 0.02
8 9 0.15
9 10 0.16
10 36 0.59
11 5 0.08
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:7463676 original size:38 final size:38
Alignment explanation
Indices: 7463600--7463687 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 38
7463590 TTTTGGTACA
**
7463600 ATAA-TTTTTATAATTTTTTACAAATTTATATTTCTTT
1 ATAATTTTTTATAATTTTTTACAAATTTATAAATCTTT
*
7463637 AT-ATTTTTTATAATTTTCTTACAACTTTATAAAAT-TTT
1 ATAATTTTTTATAATTTT-TTACAAATTTAT-AAATCTTT
7463675 ATAATTTTTTATA
1 ATAATTTTTTATA
7463688 TTTCTATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
36 1 0.02
37 15 0.34
38 16 0.36
39 12 0.27
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (38 bp):
ATAATTTTTTATAATTTTTTACAAATTTATAAATCTTT
Found at i:7464590 original size:20 final size:22
Alignment explanation
Indices: 7464565--7464607 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7464555 TTATTTAAAT
7464565 TATTAAA-TAT-AATTAAAGTA
1 TATTAAATTATCAATTAAAGTA
*
7464585 TATTAAATTATCAATTCAAGTA
1 TATTAAATTATCAATTAAAGTA
7464607 T
1 T
7464608 TATAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (22 bp):
TATTAAATTATCAATTAAAGTA
Found at i:7464640 original size:23 final size:20
Alignment explanation
Indices: 7464612--7464655 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 20
7464602 AAGTATTATA
7464612 ATAGAAAATTTTAAATCATAATT
1 ATAG-AAATTTT-AAT-ATAATT
*
7464635 ATAGAAGTTTTAATATAATT
1 ATAGAAATTTTAATATAATT
7464655 A
1 A
7464656 ACCTACAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 6 0.30
23 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (20 bp):
ATAGAAATTTTAATATAATT
Found at i:7465072 original size:25 final size:25
Alignment explanation
Indices: 7464984--7465075 Score: 66
Period size: 25 Copynumber: 3.7 Consensus size: 25
7464974 TTTTAAATTA
**
7464984 AATTATAATTATTTTTAAATGTGTAT
1 AATTATAACAATTTTTAAAT-TGTAT
*
7465010 --TTATCACAACTTCTATTAAA-T-TAT
1 AATTATAACAA-TT-T-TTAAATTGTAT
**
7465034 AATTATAATTATTTTTAAATTGTAT
1 AATTATAACAATTTTTAAATTGTAT
*
7465059 AATTATTACAATTTTTA
1 AATTATAACAATTTTTA
7465076 TTTTACTTCA
Statistics
Matches: 50, Mismatches: 9, Indels: 15
0.68 0.12 0.20
Matches are distributed among these distances:
23 5 0.10
24 11 0.22
25 22 0.44
26 7 0.14
27 5 0.10
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.52
Consensus pattern (25 bp):
AATTATAACAATTTTTAAATTGTAT
Found at i:7466075 original size:21 final size:22
Alignment explanation
Indices: 7466051--7466092 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7466041 ACAGAGGCGA
*
7466051 AACAGAAGCA-AAACCATACAG
1 AACAGAAGCAGAAACAATACAG
*
7466072 AACAGAGGCAGAAACAATACA
1 AACAGAAGCAGAAACAATACA
7466093 AAGCAGGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.57, C:0.21, G:0.17, T:0.05
Consensus pattern (22 bp):
AACAGAAGCAGAAACAATACAG
Found at i:7467313 original size:12 final size:12
Alignment explanation
Indices: 7467296--7467360 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
7467286 TATATGTATA
7467296 TTATTTATTTAC
1 TTATTTATTTAC
7467308 TTATTTATTTTACAC
1 TTATTTA-TTT--AC
7467323 TTTTATTTTATATATA-
1 --TTA-TTTAT-T-TAC
7467339 TTATTTATTTAC
1 TTATTTATTTAC
7467351 TTATTTATTT
1 TTATTTATTT
7467361 TATACATATA
Statistics
Matches: 44, Mismatches: 0, Indels: 18
0.71 0.00 0.29
Matches are distributed among these distances:
11 2 0.05
12 18 0.41
13 8 0.18
14 3 0.07
15 2 0.05
17 5 0.11
18 5 0.11
19 1 0.02
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTTATTTAC
Found at i:7467350 original size:30 final size:31
Alignment explanation
Indices: 7467308--7467369 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
7467298 ATTTATTTAC
*
7467308 TTATTTATTTTACACT-TTTATTTTATATATA
1 TTATTTATTTTAC-CTATTTATTTTATACATA
*
7467339 TTATTTA-TTTACTTATTTATTTTATACATA
1 TTATTTATTTTACCTATTTATTTTATACATA
7467369 T
1 T
7467370 ATACATGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 1 0.04
30 20 0.71
31 7 0.25
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (31 bp):
TTATTTATTTTACCTATTTATTTTATACATA
Found at i:7467353 original size:43 final size:44
Alignment explanation
Indices: 7467257--7467362 Score: 160
Period size: 43 Copynumber: 2.4 Consensus size: 44
7467247 TATCATCATT
* * *
7467257 TTTACTTCGTTTATTTTATAGTTTTATTTTATATGTATATTATTTA
1 TTTACTT-ATTTATTTTACACTTTTATTTTATA-GTATATTATTTA
7467303 TTTACTTATTTATTTTACACTTTTATTTTATA-TATATTATTTA
1 TTTACTTATTTATTTTACACTTTTATTTTATAGTATATTATTTA
7467346 TTTACTTATTTATTTTA
1 TTTACTTATTTATTTTA
7467363 TACATATATA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
43 28 0.49
45 22 0.39
46 7 0.12
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (44 bp):
TTTACTTATTTATTTTACACTTTTATTTTATAGTATATTATTTA
Found at i:7467620 original size:27 final size:26
Alignment explanation
Indices: 7467551--7467620 Score: 61
Period size: 27 Copynumber: 2.6 Consensus size: 26
7467541 TACTCTATTT
*
7467551 TTAAATTGTTTCG-CATATTGTTGATA
1 TTAAATT-TTTCGTCATATTATTGATA
** * *
7467577 TTAAATTTCTTTTTCATATTATTTATC
1 TTAAATTT-TTCGTCATATTATTGATA
7467604 TTAAATTTATTCGTCAT
1 TTAAATTT-TTCGTCAT
7467621 CATACTAGAT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
25 1 0.03
26 9 0.26
27 24 0.71
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (26 bp):
TTAAATTTTTCGTCATATTATTGATA
Found at i:7470097 original size:25 final size:25
Alignment explanation
Indices: 7470063--7470112 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7470053 ACAAGGCCTT
7470063 GTTCAACCTACACACCAGCTGTTGA
1 GTTCAACCTACACACCAGCTGTTGA
7470088 GTTCAACCTACACACCAGCTGTTGA
1 GTTCAACCTACACACCAGCTGTTGA
7470113 CCAGGTACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (25 bp):
GTTCAACCTACACACCAGCTGTTGA
Found at i:7477576 original size:19 final size:19
Alignment explanation
Indices: 7477554--7477643 Score: 64
Period size: 19 Copynumber: 4.9 Consensus size: 19
7477544 TATGTACATG
7477554 ATATAATATGAAAAATATA
1 ATATAATATGAAAAATATA
* *
7477573 ATATAATATTAGAAATATA
1 ATATAATATGAAAAATATA
* * *
7477592 TACATGATATGTAAAA-ATA
1 -ATATAATATGAAAAATATA
**
7477611 CGAT-AT-TGAAAAATAT-
1 ATATAATATGAAAAATATA
7477627 ATATACATAT-AAAAATA
1 ATATA-ATATGAAAAATA
7477644 ATCTAAAACT
Statistics
Matches: 54, Mismatches: 12, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
16 8 0.15
17 4 0.07
18 11 0.20
19 21 0.39
20 10 0.19
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (19 bp):
ATATAATATGAAAAATATA
Found at i:7478052 original size:21 final size:22
Alignment explanation
Indices: 7478019--7478063 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7478009 TAATAAGATA
*
7478019 ATTGTATACATAACAAATA-AT
1 ATTGCATACATAACAAATATAT
*
7478040 ATTGCATATATAACAAATATAT
1 ATTGCATACATAACAAATATAT
7478062 AT
1 AT
7478064 ATTATGACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (22 bp):
ATTGCATACATAACAAATATAT
Found at i:7478880 original size:8 final size:8
Alignment explanation
Indices: 7478867--7478905 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
7478857 AAATTTGATT
7478867 TTTTTTTA
1 TTTTTTTA
7478875 TTTTTTTA
1 TTTTTTTA
7478883 TTTTTTTA
1 TTTTTTTA
**
7478891 TACTTTTA
1 TTTTTTTA
*
7478899 TATTTTT
1 TTTTTTT
7478906 GCACTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7478887 original size:18 final size:18
Alignment explanation
Indices: 7478864--7478905 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7478854 TAAAAATTTG
* * *
7478864 ATTTTTTTTTATTTTTTT
1 ATTTTTTTATACTTTTAT
7478882 ATTTTTTTATACTTTTAT
1 ATTTTTTTATACTTTTAT
7478900 ATTTTT
1 ATTTTT
7478906 GCACTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (18 bp):
ATTTTTTTATACTTTTAT
Found at i:7479442 original size:21 final size:20
Alignment explanation
Indices: 7479412--7479450 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
7479402 AGTAGGTTTA
7479412 GTTATTGGGTTTTGGGGTGG
1 GTTATTGGGTTTTGGGGTGG
7479432 GTTAGTTGGGTTTTGGGGT
1 GTTA-TTGGGTTTTGGGGT
7479451 TTAATGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.46
Consensus pattern (20 bp):
GTTATTGGGTTTTGGGGTGG
Found at i:7482557 original size:17 final size:16
Alignment explanation
Indices: 7482525--7482586 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 16
7482515 AAGTGGCACA
7482525 TTTATATTTTTATTTAAT
1 TTTATA-TTTT-TTTAAT
7482543 TTCTATATTTTTTTAAAT
1 TT-TATATTTTTTT-AAT
*
7482561 TTT-TCATTTTTTTAAA
1 TTTAT-ATTTTTTTAAT
7482577 TTTAT-TTTTT
1 TTTATATTTTT
7482587 GAAAGTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 5 0.13
16 6 0.15
17 13 0.33
18 11 0.28
19 4 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTATATTTTTTTAAT
Found at i:7483907 original size:132 final size:133
Alignment explanation
Indices: 7483764--7484024 Score: 454
Period size: 133 Copynumber: 2.0 Consensus size: 133
7483754 TTTGTAGTTA
*
7483764 TTAATTTCACCCTAAATTTT-TTTAGTTGCAAAACATATGGATTAACTATGCCAATTGAAATCTG
1 TTAATTTCACCCTAAATTTTCTTTAGTTGCAAAACATATGGATTAACTATGCCAATTGAAATCTA
* *
7483828 TTAAATTTTAACACT-ATTCTGTAACACCCGTAACCCGACTTAGACACTATGGCCAAATCAGGAG
66 TTAAATTTTAACA-TGATTCTGTAACACCCCTAACCCGACCTAGACACTATGGCCAAATCAGGAG
7483892 TCGT
130 TCGT
* *
7483896 TTAATTTCACCCTAAATTTTCTTTTGTTGCAAAACATATGGATTAACTATGCTAATTGAAATCTA
1 TTAATTTCACCCTAAATTTTCTTTAGTTGCAAAACATATGGATTAACTATGCCAATTGAAATCTA
7483961 TTAAATTTTAACATGATTCTGTAACACCCCTAACCCGACCTAGACACTATGGCCAAATCAGGAG
66 TTAAATTTTAACATGATTCTGTAACACCCCTAACCCGACCTAGACACTATGGCCAAATCAGGAG
7484025 ACGTCACAAA
Statistics
Matches: 122, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
132 21 0.17
133 101 0.83
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (133 bp):
TTAATTTCACCCTAAATTTTCTTTAGTTGCAAAACATATGGATTAACTATGCCAATTGAAATCTA
TTAAATTTTAACATGATTCTGTAACACCCCTAACCCGACCTAGACACTATGGCCAAATCAGGAGT
CGT
Found at i:7484231 original size:18 final size:19
Alignment explanation
Indices: 7484195--7484231 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
7484185 AAGAGTTTAG
7484195 TTTGTATTTGTAGAAAACC
1 TTTGTATTTGTAGAAAACC
7484214 TTTGT-TTTAGTA-AAAACC
1 TTTGTATTT-GTAGAAAACC
7484232 ATAGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTGTATTTGTAGAAAACC
Found at i:7485109 original size:17 final size:18
Alignment explanation
Indices: 7485072--7485111 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7485062 GGCCCATAAT
*
7485072 CCACATGTCCGTGTGGGC
1 CCACATGCCCGTGTGGGC
7485090 CCACATGCCCGTGT-GGC
1 CCACATGCCCGTGTGGGC
7485107 CCACA
1 CCACA
7485112 CACCCAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (18 bp):
CCACATGCCCGTGTGGGC
Found at i:7488847 original size:46 final size:46
Alignment explanation
Indices: 7488795--7489069 Score: 444
Period size: 46 Copynumber: 6.0 Consensus size: 46
7488785 AGTGTGCTCT
* *
7488795 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7488841 CTGATATGAAATGTGTAAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGT-AAGACCATGGTTGAAAGATACCATGGCAAC
7488888 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7488934 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7488980 CTGATATGAAATGTGTAAGACCATGGTTGAAAGAAACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
7489026 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7489070 TCATGTCAAA
Statistics
Matches: 218, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.00
46 172 0.79
47 45 0.21
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7495093 original size:19 final size:19
Alignment explanation
Indices: 7495069--7495105 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7495059 ACACGGCGAC
7495069 GCCGGTGCCGGCGGTGAAT
1 GCCGGTGCCGGCGGTGAAT
7495088 GCCGGTGCCGGCGGTGAA
1 GCCGGTGCCGGCGGTGAA
7495106 CGACGGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.27, G:0.49, T:0.14
Consensus pattern (19 bp):
GCCGGTGCCGGCGGTGAAT
Found at i:7495112 original size:19 final size:19
Alignment explanation
Indices: 7495071--7495113 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
7495061 ACGGCGACGC
* *
7495071 CGGTGCCGGCGGTGAATGC
1 CGGTGCCGGCGGTGAACGA
7495090 CGGTGCCGGCGGTGAACGA
1 CGGTGCCGGCGGTGAACGA
7495109 CGGTG
1 CGGTG
7495114 GTCGGCACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.12, C:0.26, G:0.49, T:0.14
Consensus pattern (19 bp):
CGGTGCCGGCGGTGAACGA
Found at i:7495725 original size:40 final size:39
Alignment explanation
Indices: 7495637--7495726 Score: 92
Period size: 40 Copynumber: 2.3 Consensus size: 39
7495627 ATTAATTTTA
* * *
7495637 ATATTATTATTGTTCTTATTAGTATTATTACTAATATCT
1 ATATTATTTTTGTTATTATTAGTATTATTACTAATATAT
* * *
7495676 ATATATATTTTTGTTATTATTAGCATATTATTATTCATGTAT
1 ATAT-TATTTTTGTTATTATTAG--TATTATTACTAATATAT
7495718 -TATTATTTT
1 ATATTATTTT
7495727 CCTTTTTATC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
39 4 0.10
40 22 0.52
41 3 0.07
42 13 0.31
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.59
Consensus pattern (39 bp):
ATATTATTTTTGTTATTATTAGTATTATTACTAATATAT
Found at i:7496021 original size:13 final size:15
Alignment explanation
Indices: 7496005--7496036 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
7495995 TTAATGTATT
7496005 ATTATTATT-TT-TC
1 ATTATTATTGTTGTC
7496018 ATTATTATTGTTGTC
1 ATTATTATTGTTGTC
7496033 ATTA
1 ATTA
7496037 GTTTAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 2 0.12
15 6 0.35
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (15 bp):
ATTATTATTGTTGTC
Found at i:7497335 original size:12 final size:12
Alignment explanation
Indices: 7497320--7497344 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7497310 AAAATCGAGA
7497320 TATAAATATTTT
1 TATAAATATTTT
7497332 TATAAATATTTT
1 TATAAATATTTT
7497344 T
1 T
7497345 GGAGTGTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATAAATATTTT
Found at i:7498580 original size:35 final size:36
Alignment explanation
Indices: 7498480--7498608 Score: 140
Period size: 35 Copynumber: 3.5 Consensus size: 36
7498470 GGAAAAGTGT
* **
7498480 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
7498515 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATC----CCATACTGAGTTAA
*
7498555 GAAATGTAGGTATGGCATT-TCCCATA-TCGAGTTGAA
1 GAAATGTAGGTATGGTATTATCCCATACT-GAGTT-AA
7498591 -AAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
7498609 TCAATGAGGA
Statistics
Matches: 82, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
34 1 0.01
35 48 0.59
36 2 0.02
39 2 0.02
40 29 0.35
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (36 bp):
GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
Found at i:7505729 original size:12 final size:12
Alignment explanation
Indices: 7505712--7505737 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7505702 TCATTAAAAT
7505712 GGTTAGTTGAAA
1 GGTTAGTTGAAA
7505724 GGTTAGTTGAAA
1 GGTTAGTTGAAA
7505736 GG
1 GG
7505738 CTCATTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (12 bp):
GGTTAGTTGAAA
Found at i:7513998 original size:9 final size:9
Alignment explanation
Indices: 7513984--7514009 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7513974 TTATTGACTA
7513984 TTGAGTGAT
1 TTGAGTGAT
7513993 TTGAGTGAT
1 TTGAGTGAT
7514002 TTGAGTGA
1 TTGAGTGA
7514010 ATCTTTAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (9 bp):
TTGAGTGAT
Found at i:7524473 original size:19 final size:19
Alignment explanation
Indices: 7524449--7524486 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7524439 GGATTTCAAG
7524449 AAACGAGAATTCGTACAAT
1 AAACGAGAATTCGTACAAT
7524468 AAACGAGAATTCGTACAAT
1 AAACGAGAATTCGTACAAT
7524487 CCGGTCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (19 bp):
AAACGAGAATTCGTACAAT
Found at i:7529601 original size:14 final size:14
Alignment explanation
Indices: 7529582--7529609 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7529572 GAGTTAAAGC
7529582 CCGCAGGGAAGGCA
1 CCGCAGGGAAGGCA
7529596 CCGCAGGGAAGGCA
1 CCGCAGGGAAGGCA
7529610 AGAAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.43, T:0.00
Consensus pattern (14 bp):
CCGCAGGGAAGGCA
Found at i:7530048 original size:18 final size:15
Alignment explanation
Indices: 7530021--7530061 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7530011 AACCTAATTT
7530021 TTATTT-TTATTTTA
1 TTATTTATTATTTTA
*
7530035 -T-CTTATTATTTTA
1 TTATTTATTATTTTA
7530048 TTATTTATTATTTT
1 TTATTTATTATTTT
7530062 CAGATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.09
13 9 0.41
14 1 0.05
15 10 0.45
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTATTATTTTA
Found at i:7530316 original size:15 final size:15
Alignment explanation
Indices: 7530296--7530324 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7530286 GATGCTGATT
7530296 TGGTTGTTGTTGCCC
1 TGGTTGTTGTTGCCC
7530311 TGGTTGTTGTTGCC
1 TGGTTGTTGTTGCC
7530325 TATATAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.17, G:0.34, T:0.48
Consensus pattern (15 bp):
TGGTTGTTGTTGCCC
Found at i:7531658 original size:10 final size:10
Alignment explanation
Indices: 7531643--7531702 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
7531633 TAATTTTAGG
7531643 ATTTAT-TTT
1 ATTTATCTTT
7531652 CATTTATCTTT
1 -ATTTATCTTT
7531663 ATTTATCTTT
1 ATTTATCTTT
*
7531673 AATTATCTTT
1 ATTTATCTTT
7531683 ATTTAT-TTGT
1 ATTTATCTT-T
7531693 ATTTATCTTT
1 ATTTATCTTT
7531703 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:7559898 original size:34 final size:34
Alignment explanation
Indices: 7559855--7559923 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7559845 ATTTAATGAA
7559855 TTGTCTCGTTCACCATTAACACAAAGCCCTTCTC
1 TTGTCTCGTTCACCATTAACACAAAGCCCTTCTC
7559889 TTGTCTCGTTCACCATTAACACAAAGCCCTTCTC
1 TTGTCTCGTTCACCATTAACACAAAGCCCTTCTC
7559923 T
1 T
7559924 ACTTAGCGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.35, G:0.09, T:0.33
Consensus pattern (34 bp):
TTGTCTCGTTCACCATTAACACAAAGCCCTTCTC
Found at i:7567299 original size:28 final size:27
Alignment explanation
Indices: 7567267--7567325 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
7567257 TAAATTAATA
*
7567267 TTATATCGTGT-ATATCATTATTATAGTT
1 TTATATAGTGTAATATCA-TATTAT-GTT
*
7567295 TTATATATTGTAAATATCATATTATGTT
1 TTATATAGTGT-AATATCATATTATGTT
7567323 TTA
1 TTA
7567326 CCATGTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 15 0.56
29 6 0.22
30 6 0.22
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.54
Consensus pattern (27 bp):
TTATATAGTGTAATATCATATTATGTT
Found at i:7571983 original size:24 final size:23
Alignment explanation
Indices: 7571939--7571983 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
7571929 TGACAATAAT
*
7571939 ATTAGGATAAATATTAGATTAAC
1 ATTAGGATAAATATCAGATTAAC
* *
7571962 ATTAGAGATTAATATCATATTA
1 ATTAG-GATAAATATCAGATTA
7571984 TGATTTACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (23 bp):
ATTAGGATAAATATCAGATTAAC
Found at i:7573986 original size:15 final size:15
Alignment explanation
Indices: 7573962--7573993 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7573952 ACAACACCTC
7573962 ACCAGAGAAATCAGT
1 ACCAGAGAAATCAGT
*
7573977 ACCAGGGAAATCAGT
1 ACCAGAGAAATCAGT
7573992 AC
1 AC
7573994 TTGATCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (15 bp):
ACCAGAGAAATCAGT
Found at i:7576634 original size:21 final size:21
Alignment explanation
Indices: 7576608--7576648 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7576598 TTAACTTCAC
7576608 CCTAATCCCTTCTCAAACCTA
1 CCTAATCCCTTCTCAAACCTA
7576629 CCTAATCCCTTCTCAAACCT
1 CCTAATCCCTTCTCAAACCT
7576649 TTAAATGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.44, G:0.00, T:0.29
Consensus pattern (21 bp):
CCTAATCCCTTCTCAAACCTA
Found at i:7577308 original size:5 final size:5
Alignment explanation
Indices: 7577298--7577324 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7577288 GTTCAAACAG
7577298 TATTT TATTT TATTT TATTT TATTT TA
1 TATTT TATTT TATTT TATTT TATTT TA
7577325 AATATCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:7578571 original size:23 final size:24
Alignment explanation
Indices: 7578535--7578589 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
7578525 TAAATTAAAT
*
7578535 TTTAAAA-TATA-TTTGATATATTA
1 TTTAAAATTATATTTTGAAATA-TA
7578558 TTTAAAATTA-ATTTTGAAATATA
1 TTTAAAATTATATTTTGAAATATA
*
7578581 ATTAAAATT
1 TTTAAAATT
7578590 TTAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTTAAAATTATATTTTGAAATATA
Found at i:7582048 original size:2 final size:2
Alignment explanation
Indices: 7582041--7582070 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7582031 TGACAAGCTT
7582041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7582071 AAAGAAAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7584282 original size:32 final size:32
Alignment explanation
Indices: 7584241--7584305 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7584231 TGTCAGTTTT
7584241 GCGACTGCTGATAAGAAGAGTATCGAGTTGGC
1 GCGACTGCTGATAAGAAGAGTATCGAGTTGGC
7584273 GCGACTGCTGATAAGAAGAGTATCGAGTTGGC
1 GCGACTGCTGATAAGAAGAGTATCGAGTTGGC
7584305 G
1 G
7584306 TTTACTTTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.35, T:0.22
Consensus pattern (32 bp):
GCGACTGCTGATAAGAAGAGTATCGAGTTGGC
Found at i:7591360 original size:15 final size:15
Alignment explanation
Indices: 7591340--7591369 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7591330 AATAATAATT
7591340 ATAATAGTAAAAATA
1 ATAATAGTAAAAATA
*
7591355 ATAATAGTAATAATA
1 ATAATAGTAAAAATA
7591370 GCTAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAGTAAAAATA
Found at i:7591485 original size:15 final size:15
Alignment explanation
Indices: 7591465--7591495 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7591455 ATATATATTA
7591465 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
7591480 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
7591495 A
1 A
7591496 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:7591624 original size:27 final size:27
Alignment explanation
Indices: 7591589--7591641 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7591579 AAAATATGTT
* * *
7591589 AATAAAAATAACAGTAGTAGTAATAAA
1 AATAAAAATAAAAATAATAGTAATAAA
7591616 AATAAAAATAAAAATAATAGTAATAA
1 AATAAAAATAAAAATAATAGTAATAA
7591642 TGATATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.23
Consensus pattern (27 bp):
AATAAAAATAAAAATAATAGTAATAAA
Found at i:7591640 original size:21 final size:21
Alignment explanation
Indices: 7591616--7591664 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7591606 TAGTAATAAA
7591616 AATAAAAATAAAAATAATAGT
1 AATAAAAATAAAAATAATAGT
** **
7591637 AATAATGATATTAATAATAGT
1 AATAAAAATAAAAATAATAGT
7591658 AATAAAA
1 AATAAAA
7591665 CAAAGAAAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
AATAAAAATAAAAATAATAGT
Found at i:7591866 original size:3 final size:3
Alignment explanation
Indices: 7591831--7591935 Score: 90
Period size: 3 Copynumber: 35.0 Consensus size: 3
7591821 GAAAATAGTG
* * * * *
7591831 ATA AT- ATA ACA ATA ATA GTA AT- ATA A-A AAA ATA ATA ATA GTA ACGGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
*
7591878 GATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
7591924 CTA ACA ATA ATA
1 ATA ATA ATA ATA
7591936 TAAATAAAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
2 6 0.07
3 72 0.89
4 1 0.01
5 1 0.01
6 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7593584 original size:44 final size:44
Alignment explanation
Indices: 7593507--7594020 Score: 304
Period size: 44 Copynumber: 11.8 Consensus size: 44
7593497 ATCTATAATT
* * * * * **
7593507 TTCAGCCTGTTACCCTATTGCTTTGGGGTTTAAGGCCCATCACC
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * * * *
7593551 TTCAATCTATTTCCCTACTGCTTAGGGGGTTAAGAT-CTTGTAAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCAT-CAAA
* ***
7593595 TTCAGCCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCC
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * * * **
7593639 TTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * **
7593682 TTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * ***
7593725 TTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCT
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
** * * * * * * **
7593769 TTTGATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGT-AAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * ***
7593812 TCCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCC
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * * * * **
7593856 TTCAATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGT-AAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* ***
7593899 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCC
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * * * * **
7593943 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAA
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
* * * *
7593986 TTTAGCCTGTTACCCTACTACTTAGGGAG-TTAAGG
1 TTCAACCTATTACCCTACTGCTTAGGG-GTTTAAGG
7594021 CTCGTTGCTT
Statistics
Matches: 348, Mismatches: 116, Indels: 13
0.73 0.24 0.03
Matches are distributed among these distances:
43 162 0.47
44 184 0.53
45 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (44 bp):
TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCAAA
Found at i:7593656 original size:88 final size:87
Alignment explanation
Indices: 7593507--7593715 Score: 339
Period size: 88 Copynumber: 2.4 Consensus size: 87
7593497 ATCTATAATT
* *
7593507 TTCAGCCTGTTACCCTATTGCTTTGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGC
7593572 TTAGGGGGTTAAGATCTTGTAAA
66 TTAGGGGGTTAAGATC-TGTAAA
* * * *
7593595 TTCAGCCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGC
7593660 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
7593682 TTCCA-CCTGTTACCCTACTGCTTAGGGGTTTAAG
1 TT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
7593716 ATCTGTAAAT
Statistics
Matches: 113, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
87 36 0.32
88 77 0.68
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (87 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:7593754 original size:130 final size:131
Alignment explanation
Indices: 7593563--7594067 Score: 494
Period size: 130 Copynumber: 3.9 Consensus size: 131
7593553 CAATCTATTT
* *
7593563 CCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGTTTAA
1 CCCTACTGCTTAGGGGGTTAAGATCATGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
*
7593628 GGTCCATCGCCTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTGTT
66 GGTCCATCGCTTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTGTT
7593693 A
131 A
*
7593694 CCCTACTGCTTAGGGGTTTAAGATC-TGTAAATTCCA-CCTGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGTTAAGATCATGTAAATT-CAGCCTGTTACCCTACTGCTTAGGGGTTTA
* * * *
7593757 AGGTCCATCGCTTTTGATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAA-TCCAACCTA
65 AGGTCCATCGCTTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCC-ACCTG
7593821 TTA
129 TTA
* * ** ** * * *
7593824 CCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTCAATCTGTTTCCTTACTGCTTAGGGGGTT
1 CCCTACTGCTTAGGGGGTTAA-GATCAT-GTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTT
* ** *** * * * * * ** * *
7593887 AAGATCTGT-AAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTCGAT
64 AAGGTCCATCGCTTTCGATCTATTTCCCTACTGCTTAGGGGGTTAA-GATC-T-GTAAATTCCAC
*
7593949 CTGTTT
126 CTGTTA
* *
7593955 CCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTTAGCCTGTTACCCTACTACTTAGGGAG-TTA
1 CCCTACTGCTTAGGGGGTTAAGATCATGTAAATTCAGCCTGTTACCCTACTGCTTAGGG-GTTTA
* * * *
7594018 AGG-CTCGTTGCTTTCGATCTGTTTCCCTACTGCTTAGGGGGTCAA-ATCTG
65 AGGTC-CATCGCTTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTG
7594068 CTATCTTCAA
Statistics
Matches: 303, Mismatches: 56, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
127 1 0.00
128 2 0.01
129 7 0.02
130 172 0.57
131 115 0.38
132 4 0.01
133 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (131 bp):
CCCTACTGCTTAGGGGGTTAAGATCATGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
GGTCCATCGCTTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTGTT
A
Found at i:7593779 original size:87 final size:87
Alignment explanation
Indices: 7593688--7594067 Score: 527
Period size: 87 Copynumber: 4.4 Consensus size: 87
7593678 TAAATTCCAC
* * *
7593688 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTATTACCCTACTGCTTAGGGG
* *
7593753 TTTAAGGTCCATCGCTTTTGAT
66 TTTAAGGTCCATCGCCTTCGAT
*
7593775 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAA-TCCAACCTATTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCC-ACCTATTACCCTACTGCTTAGGG
* *
7593839 GTTTAAGGTTCATCGCCTTCAAT
65 GTTTAAGGTCCATCGCCTTCGAT
* *
7593862 CTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTATTACCCTACTGCTTAGGGG
*
7593927 TTTAAGGTTCATCGCCTTCGAT
66 TTTAAGGTCCATCGCCTTCGAT
* * *
7593949 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATT-TAGCCTGTTACCCTACTACTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCA-CCTATTACCCTACTGCTTAGGG
* * *
7594013 AG-TTAAGG-CTCGTTGCTTTCGAT
65 -GTTTAAGGTC-CATCGCCTTCGAT
*
7594036 CTGTTTCCCTACTGCTTAGGGGGTCAA-ATCTG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
7594068 CTATCTTCAA
Statistics
Matches: 269, Mismatches: 19, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
86 9 0.03
87 257 0.96
88 3 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (87 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTATTACCCTACTGCTTAGGGG
TTTAAGGTCCATCGCCTTCGAT
Found at i:7593888 original size:217 final size:218
Alignment explanation
Indices: 7593512--7593932 Score: 682
Period size: 217 Copynumber: 1.9 Consensus size: 218
7593502 TAATTTTCAG
* *
7593512 CCTGTTACCCTATTGCTTTGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGCTTAGG
* *
7593577 GGGTTAAGATCTTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTC
66 GGGTTAAGATCTTGTAAATCCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTC
* * *
7593642 GATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTGTTACCCTACTGCTTAG
131 AATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAG
7593707 GGGTTTAAGATCTGTAAATTCCA
196 GGGTTTAAGATCTGTAAATTCCA
* * * ** * *
7593730 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCTTTTGATCTGTTTCCTTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGCTTAGG
*
7593795 GGGTTAAGATC-TGTAAATCCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTC
66 GGGTTAAGATCTTGTAAATCCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTC
* *
7593859 AATCTGTTTCCTTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAG
131 AATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAG
7593924 GGGTTTAAG
196 GGGTTTAAG
7593933 GTTCATCGCC
Statistics
Matches: 186, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
217 119 0.64
218 67 0.36
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (218 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCCCTACTGCTTAGG
GGGTTAAGATCTTGTAAATCCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTC
AATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAG
GGGTTTAAGATCTGTAAATTCCA
Found at i:7594018 original size:43 final size:42
Alignment explanation
Indices: 7593563--7594019 Score: 319
Period size: 43 Copynumber: 10.5 Consensus size: 42
7593553 CAATCTATTT
* *
7593563 CCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTCAGCCTATTA
1 CCCTACTGCTTA-GGGGTTAAGATC-TGTAAATTCAACCTGTTA
* ** *** * * * *
7593607 CCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTATTT
1 CCCTACTGCTTAGGGG-TTAAGATCTGT-AAATTCAACCTGTTA
*
7593651 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAACCTGTTA
*
7593694 CCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCCACCTGTTA
1 CCCTACTGCTTAGGGG-TTAAGATCTGTAAATTCAACCTGTTA
* ** *** ** * *
7593737 CCCTACTGCTTAGGGGTTTAAGGTCCATCGCTTTTGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGATCTGT-AAATTCAACCTGTTA
* * *
7593781 CCTTACTGCTTAGGGGGTTAAGATCTGTAAATCCAACCTATTA
1 CCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAACCTGTTA
* ** * *
7593824 CCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTCAATCTGTTT
1 CCCTACTGCTTAGGGG-TTAA-GATC-T-GTAAATTCAACCTGTTA
* *
7593868 CCTTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTATTA
1 CCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAACCTGTTA
* ** * * *
7593911 CCCTACTGCTTAGGGGTTTAAGGTTCATCG--CCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAA-GATC-T-GTAAATTCAACCTGTTA
* *
7593955 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAACCTGTTA
*
7593998 CCCTACTACTTAGGGAGTTAAG
1 CCCTACTGCTTAGGG-GTTAAG
7594020 GCTCGTTGCT
Statistics
Matches: 317, Mismatches: 75, Indels: 43
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.01
42 17 0.05
43 151 0.48
44 127 0.40
45 18 0.06
46 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGATCTGTAAATTCAACCTGTTA
Found at i:7594199 original size:44 final size:44
Alignment explanation
Indices: 7594151--7595399 Score: 907
Period size: 44 Copynumber: 28.4 Consensus size: 44
7594141 GTAATGTCAG
* * *
7594151 ATCTGCTATTTTTGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
7594195 ATCTGCTAT-TTTCAACTTGTTCCCTATAAGCACAAGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* * * * * ** *
7594237 ATGCTG-AATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTTAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
7594282 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * * *
7594326 ATCTGCTAT-TTTCAACTTATTCCCTATAAGTACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * ** *
7594368 ATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTTAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * * *
7594414 ATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
7594458 ATCTGTTAT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * * *
7594500 ATGATGAAATCTTCGATCTACTTCACTATAAGCACAGGAATGTCAG
1 AT-CTGTTATCTTTGATCT-GTTCCCTATAAGCACAGGGATGCCAA
*
7594546 ATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
7594590 ATCTGTTAT-TTTCAACTTGTTCCCTATAAGCATAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * ** *
7594632 ATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTTAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * * *
7594678 ATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
7594722 ATCTGTTAT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * * *
7594764 ATGCTGAAATCTTCGATCTGCTTCACTATAAGCATAGGAATGTCAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
7594810 ATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
7594854 ATCTGTTAT-TTTCAACTTATTCCCTATAAGCACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * ** *
7594896 ATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACA-GGATGTTAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * * *
7594941 ATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
7594985 ATCTGTTAT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * * *
7595027 ATGCTGAAATCTTCGATCTGCTTCACTATAAGCATAGGAATGTCAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
7595073 ATCTGTTATCTTCGATCTGTTCCCTATAAGCATAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
7595117 ATCTGTT-TTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAT
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * *
7595161 GT-TGAAATCTTTGATCTGTTTCACTGTAAGCACAGGAATGTCAA
1 ATCTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
7595205 ATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
7595249 ATCTGTAAT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGTTATCTTTGATC-TGTTCCCTATAAGCACAGGGATGCCAA
*** * * * * * *
7595291 ATGCTAAAATCTTTGATCTGCTTCACTGTAAGCATAGGAATGTCAG
1 AT-CTGTTATCTTTGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * * *
7595337 ATCTGTTATCTTCGATCTTTTCCCTATAAACATAGGGATGCCAA
1 ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
** *
7595381 ATCTGCAATCTTCGATCTG
1 ATCTGTTATCTTTGATCTG
7595400 CTCTCCGCCG
Statistics
Matches: 936, Mismatches: 215, Indels: 108
0.74 0.17 0.09
Matches are distributed among these distances:
42 20 0.02
43 128 0.14
44 666 0.71
45 110 0.12
46 12 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
ATCTGTTATCTTTGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:7594441 original size:132 final size:132
Alignment explanation
Indices: 7594060--7595385 Score: 2125
Period size: 132 Copynumber: 10.1 Consensus size: 132
7594050 CTTAGGGGGT
* * * ** * *
7594060 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAAGATGCCATGCTAAAATCTTCAATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
7594125 CTTCACTGTAAGCATAGTAATGTCAGATCTGCTATTTTTGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594190 GC
131 GC
* *
7594192 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG-AATCTTCGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
7594256 CTTCACTGTAAGCACAGGAATGTTAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594321 GC
131 GC
* * * *
7594323 CAAATCTGCTATTTTCAACTTATTCCCTATAAGTACAGGGATGCCATGCTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
7594388 CTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594453 GC
131 GC
* *
7594455 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATGAAATCTTCGATCTA
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
7594520 CTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594585 GC
131 GC
* *
7594587 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
7594652 CTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594717 GC
131 GC
7594719 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
7594784 CTTCACTATAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594849 GC
131 GC
* *
7594851 CAAATCTGTTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
7594916 CTTCACTGTAAGCACAGG-ATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594980 GC
131 GC
7594982 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * * *
7595047 CTTCACTATAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCATAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7595112 GC
131 GC
* * *
7595114 CAAATCTGTTTTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
7595179 TTTCACTGTAAGCACAGGAATGTCAAATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7595244 GC
131 GC
* * *
7595246 CAAATCTGTAATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTAAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
7595311 CTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTTTTCCCTATAAACATAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7595376 GC
131 GC
7595378 CAAATCTG
1 CAAATCTG
7595386 CAATCTTCGA
Statistics
Matches: 1112, Mismatches: 80, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
131 244 0.22
132 868 0.78
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (132 bp):
CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
GC
Found at i:7595053 original size:527 final size:528
Alignment explanation
Indices: 7594060--7595386 Score: 2289
Period size: 527 Copynumber: 2.5 Consensus size: 528
7594050 CTTAGGGGGT
* * * ** * **
7594060 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAAGATGCCATGCTAAAATCTTCAATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
* * * *
7594125 CTTCACTGTAAGCATAGTAATGTCAGATCTGCTATTTTTGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
* *
7594190 GCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG-AATCTTCGATC
131 GCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
* * *
7594254 TGCTTCACTGTAAGCACAGGAATGTTAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGG
196 TGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGG
*
7594319 ATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGTACAGGGATGCCATGCTGAAATCTTTGA
261 ATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGA
7594384 TCTGCTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAG
326 TCTGCTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAG
7594449 GGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATGAAATCTTC
391 GGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATGAAATCTTC
7594514 GATCTACTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCAC
456 GATCTACTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCAC
7594579 AGGGATGC
521 AGGGATGC
*
7594587 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
* *
7594652 CTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
7594717 GCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
131 GCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
*
7594782 TGCTTCACTATAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGG
196 TGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGG
*
7594847 ATGCCAAATCTGTTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGA
261 ATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGA
7594912 TCTGCTTCACTGTAAGCACAGG-ATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAG
326 TCTGCTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAG
*
7594976 GGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTC
391 GGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATGAAATCTTC
* * *
7595041 GATCTGCTTCACTATAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCAT
456 GATCTACTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCAC
7595106 AGGGATGC
521 AGGGATGC
* *
7595114 CAAATCTGTTTTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTGAAATCTTTGATCTG
1 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
* * * *
7595179 TTTCACTGTAAGCACAGGAATGTCAAATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
* * *
7595244 GCCAAATCTGTAATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTAAAATCTTTGATC
131 GCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
* * *
7595309 TGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTTTTCCCTATAAACATAGGG
196 TGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGG
7595374 ATGCCAAATCTGC
261 ATGCCAAATCTGC
7595387 AATCTTCGAT
Statistics
Matches: 755, Mismatches: 44, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
527 598 0.79
528 157 0.21
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (528 bp):
CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
GCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
TGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGG
ATGCCAAATCTGCTATTTTCAACTTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGA
TCTGCTTCACTGTAAGCACAGGAATGTTAGATTTGCTATCTTCGATCTGTTCCCTATAAACACAG
GGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGATGAAATCTTC
GATCTACTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCAC
AGGGATGC
Found at i:7596723 original size:1 final size:1
Alignment explanation
Indices: 7596717--7596752 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
7596707 TGGCCTCTCC
* *
7596717 TTTTTTTTTTTCTTTTTTTTTTTTTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7596753 GGTCTTAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.03, C:0.03, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:7596740 original size:18 final size:18
Alignment explanation
Indices: 7596717--7596752 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7596707 TGGCCTCTCC
*
7596717 TTTTTTTTTTTCTTTTTT
1 TTTTTTTTTTTATTTTTT
7596735 TTTTTTTTTTTATTTTTT
1 TTTTTTTTTTTATTTTTT
7596753 GGTCTTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.00, T:0.94
Consensus pattern (18 bp):
TTTTTTTTTTTATTTTTT
Found at i:7601727 original size:15 final size:16
Alignment explanation
Indices: 7601707--7601741 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7601697 AATAATAATT
7601707 ATAATAGTAAAAATA-
1 ATAATAGTAAAAATAG
*
7601722 ATAATAGTAATAATAG
1 ATAATAGTAAAAATAG
7601738 ATAA
1 ATAA
7601742 GTGGGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (16 bp):
ATAATAGTAAAAATAG
Found at i:7601848 original size:15 final size:15
Alignment explanation
Indices: 7601828--7601858 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7601818 ATATATATAA
7601828 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
7601843 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
7601858 A
1 A
7601859 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:7601983 original size:6 final size:6
Alignment explanation
Indices: 7601974--7602043 Score: 133
Period size: 6 Copynumber: 11.8 Consensus size: 6
7601964 CAGTAGTAGT
7601974 AATAAA AAT-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
7602021 AATAAA AATAAA AATAAA AATAA
1 AATAAA AATAAA AATAAA AATAA
7602044 TAGTAATAAT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.08
6 58 0.92
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:7602221 original size:3 final size:3
Alignment explanation
Indices: 7602215--7602441 Score: 88
Period size: 3 Copynumber: 74.7 Consensus size: 3
7602205 ATAGTTGTAG
* * * * * * *
7602215 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
7602262 T-A TAA -AA AAA TAA TAA TAG TAA CGGAGA TGA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA --TA-A TAA TAA TAA TAA TAA TAA
* * * * *
7602308 TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TGA TGA TAC TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
7602356 T-A TAAA TAA AAA T-A TAAA CAA CAA AAA AAA TAA CAA TAG CAA TAA
1 TAA T-AA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7602401 TAA TAA TGA -AA TGAA GGTAA TAA TAA TAA TAG TAAA TAA TA
1 TAA TAA TAA TAA T-AA --TAA TAA TAA TAA TAA T-AA TAA TA
7602442 TGCAAGAAAA
Statistics
Matches: 168, Mismatches: 41, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
2 11 0.07
3 145 0.86
4 7 0.04
5 3 0.02
6 2 0.01
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:7602259 original size:20 final size:21
Alignment explanation
Indices: 7602220--7602259 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7602210 TGTAGTAATA
*
7602220 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
7602241 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
7602260 AATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:7606888 original size:11 final size:11
Alignment explanation
Indices: 7606872--7606905 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7606862 TAAAAATTGT
* *
7606872 AAAATTTTATA
1 AAAATTATAAA
7606883 AAAATTATAAA
1 AAAATTATAAA
7606894 AAAATTATAAA
1 AAAATTATAAA
7606905 A
1 A
7606906 TGCATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:7607101 original size:10 final size:10
Alignment explanation
Indices: 7607086--7607204 Score: 67
Period size: 10 Copynumber: 12.4 Consensus size: 10
7607076 TGGTACGATA
7607086 ATTTTTATAT
1 ATTTTTATAT
7607096 ATTTTT-TAT
1 ATTTTTATAT
*
7607105 ATTTCTATAT
1 ATTTTTATAT
7607115 A-TTTTATA-
1 ATTTTTATAT
7607123 ATTTTT-TAT
1 ATTTTTATAT
* *
7607132 AACTTTTATAA
1 -ATTTTTATAT
* *
7607143 AATTTTACA-
1 ATTTTTATAT
7607152 ATTTTT-TAAT
1 ATTTTTAT-AT
* *
7607162 ATTTTTTTACG
1 ATTTTTATA-T
7607173 ATTTTTATAT
1 ATTTTTATAT
*
7607183 -TTTGTTCTA-
1 ATTT-TTATAT
7607192 ATTTTTA-AT
1 ATTTTTATAT
7607201 ATTT
1 ATTT
7607205 GAATTTTTTT
Statistics
Matches: 84, Mismatches: 13, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
8 4 0.05
9 33 0.39
10 36 0.43
11 11 0.13
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:7607167 original size:19 final size:20
Alignment explanation
Indices: 7607086--7607167 Score: 75
Period size: 19 Copynumber: 4.3 Consensus size: 20
7607076 TGGTACGATA
*
7607086 ATTTTTATATATTTT-TTAT
1 ATTTTTATATATTTTATAAT
*
7607105 ATTTCTATATATTTTATAAT
1 ATTTTTATATATTTTATAAT
7607125 -TTTTTATA-ACTTTTATAA-
1 ATTTTTATATA-TTTTATAAT
* * *
7607143 AATTTTACA-ATTTTTTAAT
1 ATTTTTATATATTTTATAAT
7607162 ATTTTT
1 ATTTTT
7607168 TTACGATTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
18 8 0.15
19 41 0.79
20 3 0.06
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTTATATATTTTATAAT
Found at i:7607168 original size:20 final size:19
Alignment explanation
Indices: 7607145--7607204 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
7607135 TTTTATAAAA
7607145 TTTTACAATTTTTTAATATTT
1 TTTTACAA-TTTTTAATA-TT
*
7607166 TTTTACGATTTTT-ATATT
1 TTTTACAATTTTTAATATT
7607184 TTGTT-CTAATTTTTAATATT
1 TT-TTAC-AATTTTTAATATT
7607204 T
1 T
7607205 GAATTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 5 0.15
19 11 0.32
20 11 0.32
21 7 0.21
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTTACAATTTTTAATATT
Found at i:7613600 original size:43 final size:43
Alignment explanation
Indices: 7613509--7613604 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
7613499 TGTATAGTAG
* *
7613509 AAAGAAAAGAATAAATATTCAATCAGAAACAAATGAAGTAACA
1 AAAGATAATAATAAATATTCAATCAGAAACAAATGAAGTAACA
*
7613552 AAAGATAATAATAACTATTCAATCAGAAACAAATGAAGTAACA
1 AAAGATAATAATAAATATTCAATCAGAAACAAATGAAGTAACA
7613595 AAAGATAATA
1 AAAGATAATA
7613605 TTATTAGTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.61, C:0.09, G:0.10, T:0.19
Consensus pattern (43 bp):
AAAGATAATAATAAATATTCAATCAGAAACAAATGAAGTAACA
Found at i:7614675 original size:13 final size:13
Alignment explanation
Indices: 7614654--7614686 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7614644 TATCCTCTCC
7614654 ATTTCCTTTGCTT
1 ATTTCCTTTGCTT
*
7614667 ATTTTCTTTGCTT
1 ATTTCCTTTGCTT
7614680 -TTTCCTT
1 ATTTCCTT
7614687 AAAAACTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.06, C:0.21, G:0.06, T:0.67
Consensus pattern (13 bp):
ATTTCCTTTGCTT
Found at i:7617217 original size:15 final size:15
Alignment explanation
Indices: 7617197--7617226 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7617187 TATTTTATTT
*
7617197 ATATTAGGATAATTA
1 ATATTAAGATAATTA
7617212 ATATTAAGATAATTA
1 ATATTAAGATAATTA
7617227 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:7618197 original size:12 final size:12
Alignment explanation
Indices: 7618180--7618213 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7618170 CCTACTTCCC
7618180 CTTTACTATTAT
1 CTTTACTATTAT
*
7618192 CTTTACTATCAT
1 CTTTACTATTAT
*
7618204 TTTTACTATT
1 CTTTACTATT
7618214 TTACAGGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (12 bp):
CTTTACTATTAT
Found at i:7619265 original size:3 final size:3
Alignment explanation
Indices: 7619259--7619287 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7619249 GAATTACTCC
7619259 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7619288 ATTATTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7620154 original size:18 final size:16
Alignment explanation
Indices: 7620118--7620171 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
7620108 AACCTAACCC
*
7620118 AAAAAAAAAAA-GAAGA
1 AAAAAAAAAAACTAA-A
*
7620134 AAAAAGAAAAACCTAACA
1 AAAAA-AAAAAACTAA-A
7620152 AAAAAAAAAAACTAAA
1 AAAAAAAAAAACTAAA
7620168 AAAA
1 AAAA
7620172 CCCTAGCCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.31
17 14 0.44
18 8 0.25
ACGTcount: A:0.83, C:0.07, G:0.06, T:0.04
Consensus pattern (16 bp):
AAAAAAAAAAACTAAA
Found at i:7651760 original size:71 final size:71
Alignment explanation
Indices: 7651639--7651772 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 71
7651629 GTTTTCCAAG
* * *
7651639 AAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
7651704 GTCTCA
66 GTCTCA
* ** *
7651710 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGGTACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
7651773 CTGCTTTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTCTCA
Found at i:7651875 original size:160 final size:161
Alignment explanation
Indices: 7651548--7652252 Score: 1254
Period size: 160 Copynumber: 4.4 Consensus size: 161
7651538 TTGTTTTTTC
7651548 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* *
7651613 CTGCTTTTT-AGTTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCA
66 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
7651677 AGACACGTTGAGGTAATTTCAATTTATGTCT
131 AGACACGTTGAGGTAATTTCAATTTATGTCT
* *
7651708 CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGGTACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
7651773 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
7651838 AGACACGTTGAGGTAATTTCAATTTATGT-T
131 AGACACGTTGAGGTAATTTCAATTTATGTCT
*
7651868 TAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * *
7651933 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTTCAAGAAGTGAGTTGAGCCTCA
66 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
7651998 AGACACGTTGAGGTAATTTCAATTTATGTCT
131 AGACACGTTGAGGTAATTTCAATTTATGTCT
7652029 CAAAAATCAACTCATATTGCGAGAA-TGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
7652093 CTGCTTCTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
7652158 AGACACGTTGAGGTAATTTCAATTTATTTTT
131 AGACACGTTGAGGTAATTTCAATTTATGTCT
* * * *
7652189 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
7652253 CCTATTAAAT
Statistics
Matches: 521, Mismatches: 21, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
160 379 0.73
161 142 0.27
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (161 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTATGTCT
Found at i:7651920 original size:70 final size:70
Alignment explanation
Indices: 7651800--7651932 Score: 212
Period size: 70 Copynumber: 1.9 Consensus size: 70
7651790 GTTTTCCAAG
* * *
7651800 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
7651865 GTTTA
66 GTTTA
* * *
7651870 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
7651933 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTA
Found at i:7652080 original size:70 final size:71
Alignment explanation
Indices: 7651960--7652092 Score: 196
Period size: 70 Copynumber: 1.9 Consensus size: 71
7651950 GTTTTCCAAG
* * *
7651960 AAAATCAGCTCATATTTCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
7652025 GTCTCA
66 GTCTCA
* * * *
7652031 AAAATCAACTCATATTGCGAGAA-TGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
7652093 CTGCTTCTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
70 35 0.64
71 20 0.36
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTCTCA
Found at i:7652241 original size:71 final size:71
Alignment explanation
Indices: 7652120--7652369 Score: 277
Period size: 74 Copynumber: 3.5 Consensus size: 71
7652110 GTTTTCCAAG
* * * * *
7652120 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTTAT
7652185 TTTTCA
66 TTTTCA
* * *
7652191 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATT--T
** *
7652256 ATTAAATCT
64 ATT-TTTCA
* * * * *
7652265 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTTAT
7652330 ATTTTCA
66 -TTTTCA
* * *
7652337 AAAGTTAATTCATATTGCGA-AAGGTGAGTTGAG
1 AAAATCAACTCATATTGCGAGAA-GTGAGTTGAG
7652370 TCTTTTTAAT
Statistics
Matches: 150, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
71 56 0.37
72 32 0.21
73 5 0.03
74 57 0.38
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTTAT
TTTTCA
Found at i:7652595 original size:68 final size:68
Alignment explanation
Indices: 7652419--7652727 Score: 530
Period size: 68 Copynumber: 4.5 Consensus size: 68
7652409 TTCAAAGATC
* * * *
7652419 AACTCATATTGCGAGAGTTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCTACTTTTCAAA-G
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
*
7652483 ATC
66 ATT
*
7652486 AACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
7652551 ATT
66 ATT
7652554 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
7652619 ATT
66 ATT
* *
7652622 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAACTTTCATTTCTCAAAATCTACTTTTCAAATT
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
7652687 ATT
66 ATT
7652690 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAATTT
1 AACTCATGTTGCGAGAGGTGAGTTGAGCC-TTTAATTT
7652728 CTGTTTTTAA
Statistics
Matches: 232, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
67 61 0.26
68 164 0.71
69 7 0.03
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (68 bp):
AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
ATT
Found at i:7652688 original size:136 final size:135
Alignment explanation
Indices: 7652419--7652771 Score: 532
Period size: 136 Copynumber: 2.6 Consensus size: 135
7652409 TTCAAAGATC
* * *
7652419 AACTCATATTGCGAGAGTTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCTACTTTTCAAAGA
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAAGA
* *
7652484 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAA
66 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAACTTTCATTTCTCAAAATCTACTTTTCAAA
7652549 TTATT
131 TTATT
*
7652554 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAATT
1 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAA-G
* *
7652619 ATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAACTTTCATTTCTCAAAATCTACTTTTCAA
65 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAACTTTCATTTCTCAAAATCTACTTTTCAA
7652684 ATTATT
130 ATTATT
* **
7652690 AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAA-TTTCTGTTT-TTAATTTCTA-TGTTTCAA
1 AACTCATGTTGCGAGAGGTGAGTTGAGCC-TTTAATTTTC-GTTTCTCAAAATCTACT-TTTCAA
* *
7652752 AAATCAACCCATATTGCGAG
63 AGATCAACTCATATTGCGAG
7652772 GAATGTGTTG
Statistics
Matches: 199, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
135 76 0.38
136 114 0.57
137 9 0.05
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (135 bp):
AACTCATGTTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCTACTTTTCAAAGA
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAACTTTCATTTCTCAAAATCTACTTTTCAAA
TTATT
Found at i:7654022 original size:20 final size:21
Alignment explanation
Indices: 7653983--7654024 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7653973 CCGGAGCTCC
*
7653983 CTCTCCCTCTTCCCTTTCTTTT
1 CTCTCCCTCTT-CCTCTCTTTT
7654005 CTCTCCCTCTT-CTCTCTTTT
1 CTCTCCCTCTTCCTCTCTTTT
7654025 TTTTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (21 bp):
CTCTCCCTCTTCCTCTCTTTT
Found at i:7654595 original size:13 final size:14
Alignment explanation
Indices: 7654571--7654601 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7654561 ATCATTATTA
7654571 ATATTAATATATGT
1 ATATTAATATATGT
7654585 ATATT-ATATATGT
1 ATATTAATATATGT
7654598 ATAT
1 ATAT
7654602 ATTCGTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:7654821 original size:12 final size:11
Alignment explanation
Indices: 7654800--7654829 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7654790 TTCTTAATAT
7654800 TATATTTTATA
1 TATATTTTATA
7654811 TATATTATTATA
1 TATATT-TTATA
7654823 TATATTT
1 TATATTT
7654830 AAATATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTTTATA
Found at i:7664140 original size:16 final size:17
Alignment explanation
Indices: 7664119--7664153 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7664109 GACATGAAAT
7664119 TAATAAAATAAATA-AA
1 TAATAAAATAAATATAA
*
7664135 TAATAATATAAATATAA
1 TAATAAAATAAATATAA
7664152 TA
1 TA
7664154 GCATTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAATAAAATAAATATAA
Found at i:7664653 original size:22 final size:23
Alignment explanation
Indices: 7664628--7664671 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7664618 ATCATAATAG
*
7664628 AATAATAAT-TTTATTATTTTTT
1 AATAATAATATTAATTATTTTTT
*
7664650 AATAATACTATTAATTATTTTT
1 AATAATAATATTAATTATTTTT
7664672 AAGTACAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
AATAATAATATTAATTATTTTTT
Found at i:7669606 original size:372 final size:372
Alignment explanation
Indices: 7668915--7669663 Score: 1345
Period size: 372 Copynumber: 2.0 Consensus size: 372
7668905 CAATAACAGT
* * *
7668915 AGAACCCTGCAAAACATATAACTTGGTAGTTTTTCTCTGCCTTTTCATCACAATAAGGGAACCTT
1 AGAAGCCTGCAAAACATATAACTTGGTAGTTTTTCTCTGCCCTTTCATCACAACAAGGGAACCTT
* *
7668980 TGGAAATCTTTAAAACTCCACTTTCAGCTGTGTATCTGTACCCTTTTGAATCAAGAGTACTCAAC
66 TGGAAATCTTTAAAACTCCACTTTCAGCTGTCTATCTGTACCCTTTTGAATCAAGAATACTCAAC
*
7669045 TAAAGTAAATTTCTCTTCAATTCTAGAACATGTCGTAAGTCATTAAGTGTTCTGACAACTCCATC
131 TAAAGTAAATTTCTCTTCAATTCTAGAACATGTCGTAAGTCACTAAGTGTTCTGACAACTCCATC
*
7669110 AAACATCTTAACTTTAATTGTTCCAACACCTACGATTTTACATGAAGCATTATTTCTCATCAAAA
196 AAACATCTTAACTTTAATTGTTCCAACACCTACGATTTTACATGAAGCATTAGTTCTCATCAAAA
7669175 CAACACCTTTAGACATTGTTTCGTAAGTTGTAAACCAATCCCGATTGGGACTCATGTGGAAGGTG
261 CAACACCTTTAGACATTGTTTCGTAAGTTGTAAACCAATCCCGATTGGGACTCATGTGGAAGGTG
* *
7669240 CAGCTTGAATAAAGTATCCACTCCTCGTTTACTTTAGAATTGTTGAC
326 CAGCCTGAATAAAGTATCCACTCCTCGTTCACTTTAGAATTGTTGAC
7669287 AGAAGCCTGCAAAACATATAACTTGGTAGTTTTTCTCTGCCCTTTCATCACAACAAGGGAACCTT
1 AGAAGCCTGCAAAACATATAACTTGGTAGTTTTTCTCTGCCCTTTCATCACAACAAGGGAACCTT
7669352 TGGAAATCTTTAAAACTCCACTTTCAGCTGTCTATCTGTACCCTTTTGAATCAAGAATACTCAAC
66 TGGAAATCTTTAAAACTCCACTTTCAGCTGTCTATCTGTACCCTTTTGAATCAAGAATACTCAAC
* * * *
7669417 TAAATTAAATTTCTCTTCAATTCTGGAACATGTCGTACGTCACTAAGTGTTCTGACAACTTCATC
131 TAAAGTAAATTTCTCTTCAATTCTAGAACATGTCGTAAGTCACTAAGTGTTCTGACAACTCCATC
*
7669482 AAACATCTTAACTTTAATTGTTCCAACACTTACGATTTTACATGAAGCATTAGTTCTCATCAAAA
196 AAACATCTTAACTTTAATTGTTCCAACACCTACGATTTTACATGAAGCATTAGTTCTCATCAAAA
*
7669547 CAACACCTTTAGACATTGTTTCGTAAGTTGTAAACCAATCCCGATTGGGACTTATGTGGAAGGTG
261 CAACACCTTTAGACATTGTTTCGTAAGTTGTAAACCAATCCCGATTGGGACTCATGTGGAAGGTG
* *
7669612 CAGCCTGAATCAAGTATCCACTCCTTGTTCACTTTAGAATTGTTGAC
326 CAGCCTGAATAAAGTATCCACTCCTCGTTCACTTTAGAATTGTTGAC
7669659 AGAAG
1 AGAAG
7669664 TGACTAGAAG
Statistics
Matches: 360, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
372 360 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (372 bp):
AGAAGCCTGCAAAACATATAACTTGGTAGTTTTTCTCTGCCCTTTCATCACAACAAGGGAACCTT
TGGAAATCTTTAAAACTCCACTTTCAGCTGTCTATCTGTACCCTTTTGAATCAAGAATACTCAAC
TAAAGTAAATTTCTCTTCAATTCTAGAACATGTCGTAAGTCACTAAGTGTTCTGACAACTCCATC
AAACATCTTAACTTTAATTGTTCCAACACCTACGATTTTACATGAAGCATTAGTTCTCATCAAAA
CAACACCTTTAGACATTGTTTCGTAAGTTGTAAACCAATCCCGATTGGGACTCATGTGGAAGGTG
CAGCCTGAATAAAGTATCCACTCCTCGTTCACTTTAGAATTGTTGAC
Done.