Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 300 of 444
Found at i:86653839 original size:31 final size:31
Alignment explanation
Indices: 86653804--86653862 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
86653794 TTCTTGCATT
*
86653804 AAATCCAACCAAAAACAACAAATATAGCTTG
1 AAATCCAACCAAAAAAAACAAATATAGCTTG
* *
86653835 AAATCCAGCCAAAAAAAACAAATGTAGC
1 AAATCCAACCAAAAAAAACAAATATAGC
86653863 ATAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.56, C:0.22, G:0.08, T:0.14
Consensus pattern (31 bp):
AAATCCAACCAAAAAAAACAAATATAGCTTG
Found at i:86654132 original size:21 final size:21
Alignment explanation
Indices: 86654108--86654148 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86654098 GCTGCCATCG
*
86654108 CTGCTACCTCTGCCTCCCTCA
1 CTGCTACCGCTGCCTCCCTCA
**
86654129 CTGCTGTCGCTGCCTCCCTC
1 CTGCTACCGCTGCCTCCCTC
86654149 TCTACTGCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.51, G:0.15, T:0.29
Consensus pattern (21 bp):
CTGCTACCGCTGCCTCCCTCA
Found at i:86654595 original size:13 final size:14
Alignment explanation
Indices: 86654569--86654597 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86654559 AGTAATGACG
86654569 AATTAAACCATTAT
1 AATTAAACCATTAT
86654583 AATTAAA-CATTAT
1 AATTAAACCATTAT
86654596 AA
1 AA
86654598 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:86659673 original size:9 final size:9
Alignment explanation
Indices: 86659641--86659754 Score: 89
Period size: 9 Copynumber: 13.0 Consensus size: 9
86659631 TAAGTATAAT
86659641 TAAGTTATG
1 TAAGTTATG
*
86659650 TAAGTCAT-
1 TAAGTTATG
*
86659658 TTA-TTATG
1 TAAGTTATG
86659666 TAAGTTATG
1 TAAGTTATG
86659675 T-A-TTATG
1 TAAGTTATG
86659682 TAAGTTATG
1 TAAGTTATG
*
86659691 TAAATTATG
1 TAAGTTATG
86659700 TAAGTTATG
1 TAAGTTATG
* *
86659709 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
86659721 TAAATTATG
1 TAAGTTATG
86659730 TAAGTTATG
1 TAAGTTATG
86659739 T-A-TTATG
1 TAAGTTATG
86659746 TAAGTTATG
1 TAAGTTATG
86659755 AAATTTGATC
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
7 15 0.18
8 10 0.12
9 51 0.61
10 1 0.01
11 1 0.01
12 3 0.04
13 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:86659725 original size:30 final size:30
Alignment explanation
Indices: 86659691--86659854 Score: 98
Period size: 30 Copynumber: 5.3 Consensus size: 30
86659681 GTAAGTTATG
86659691 TAAATTATGTAAGTTATGAATTTTGATCTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
* * **
86659721 TAAATTATGTAAGTTATGTATTATGTAAGTT
1 TAAATTATGTAAGTTATGAATTTTG-ATCTT
* * * ** * * *
86659752 ATGAAATTTGATCTTTAAATTAT-TATGTAAGTTATG
1 -T-AAA-TT-A--TGTAAGTTATGAAT-TTTGATCTT
* *
86659788 TAAATTATGTAACTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
* *
86659818 TAAATTATG-AAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
86659847 TAAATTAT
1 TAAATTAT
86659855 TATGTAAGTT
Statistics
Matches: 103, Mismatches: 22, Indels: 19
0.72 0.15 0.13
Matches are distributed among these distances:
29 26 0.25
30 44 0.43
31 4 0.04
32 2 0.02
33 5 0.05
34 5 0.05
35 2 0.02
36 4 0.04
37 11 0.11
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAATTTTGATCTT
Found at i:86659751 original size:16 final size:16
Alignment explanation
Indices: 86659645--86659754 Score: 116
Period size: 16 Copynumber: 6.9 Consensus size: 16
86659635 TATAATTAAG
* *
86659645 TTATGTAAGTCATTTA
1 TTATGTAAGTTATGTA
86659661 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
86659677 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
86659695 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* ** **
86659711 TTTTG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
86659725 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
86659741 TTATGTAAGTTATG
1 TTATGTAAGTTATG
86659755 AAATTTGATC
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
14 7 0.09
15 6 0.08
16 50 0.64
18 15 0.19
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:86659788 original size:9 final size:9
Alignment explanation
Indices: 86659773--86660228 Score: 98
Period size: 9 Copynumber: 52.8 Consensus size: 9
86659763 TCTTTAAATT
86659773 ATTATGTAA
1 ATTATGTAA
*
86659782 GTTATGTAA
1 ATTATGTAA
86659791 ATTATGTAA
1 ATTATGTAA
*
86659800 CTTATG-AA
1 ATTATGTAA
*
86659808 ATTTGATCTTTAA
1 A-TT-A--TGTAA
86659821 ATTATG-AA
1 ATTATGTAA
*
86659829 GTTATG-AA
1 ATTATGTAA
86659837 ATT-TG-AA
1 ATTATGTAA
* *
86659844 CTT-T-AAA
1 ATTATGTAA
86659851 TTATTATGTAA
1 --ATTATGTAA
*
86659862 GTTATGTAA
1 ATTATGTAA
86659871 ATTATGTAA
1 ATTATGTAA
*
86659880 CTTATG-AA
1 ATTATGTAA
*
86659888 ATTTGATCTTTAA
1 A-TT-A--TGTAA
86659901 ATTATG-AA
1 ATTATGTAA
*
86659909 GTTATG-AA
1 ATTATGTAA
86659917 ATT-TG-AA
1 ATTATGTAA
* *
86659924 CTT-T-AAA
1 ATTATGTAA
86659931 TTATTATGTAA
1 --ATTATGTAA
*
86659942 GTTATGTAA
1 ATTATGTAA
86659951 ATTATGTAA
1 ATTATGTAA
*
86659960 CTTATG-AA
1 ATTATGTAA
86659968 ATT-TGGTCTTTAA
1 ATTAT-G----TAA
86659981 ATTATGTAA
1 ATTATGTAA
*
86659990 GTTATG-AA
1 ATTATGTAA
86659998 ATT-TG-AA
1 ATTATGTAA
* *
86660005 CTT-T-AAA
1 ATTATGTAA
86660012 TTATTATGTAA
1 --ATTATGTAA
*
86660023 GTTATGTAA
1 ATTATGTAA
86660032 ATTATGTAA
1 ATTATGTAA
* *
86660041 CTTAT-AAA
1 ATTATGTAA
86660049 ATT-TGGTCTTTAA
1 ATTAT-G----TAA
86660062 ATTATGTAA
1 ATTATGTAA
*
86660071 GTTATGT--
1 ATTATGTAA
*
86660078 ATCATGTAA
1 ATTATGTAA
*
86660087 GTTATG-AA
1 ATTATGTAA
86660095 ATT-TG---
1 ATTATGTAA
*
86660100 A-TATTTAA
1 ATTATGTAA
86660108 ATTATGTAA
1 ATTATGTAA
* *
86660117 ATCATG--C
1 ATTATGTAA
86660124 ATTATGTAA
1 ATTATGTAA
**
86660133 GCTATGT--
1 ATTATGTAA
86660140 ATTATGTAA
1 ATTATGTAA
* *
86660149 GTTAAGTAA
1 ATTATGTAA
86660158 ATTATGTAA
1 ATTATGTAA
*
86660167 GTTATG-AA
1 ATTATGTAA
86660175 ATT-TG--A
1 ATTATGTAA
*
86660181 ACT-T-TAA
1 ATTATGTAA
86660188 ATTATGTAA
1 ATTATGTAA
*
86660197 GTTATGT--
1 ATTATGTAA
86660204 ATTATGTAA
1 ATTATGTAA
86660213 ATTATGTAA
1 ATTATGTAA
86660222 ATTATGT
1 ATTATGT
86660229 GAGTTGCTGG
Statistics
Matches: 328, Mismatches: 63, Indels: 112
0.65 0.13 0.22
Matches are distributed among these distances:
4 1 0.00
5 2 0.01
6 4 0.01
7 57 0.17
8 49 0.15
9 176 0.54
10 5 0.02
11 8 0.02
12 6 0.02
13 18 0.05
14 2 0.01
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.45
Consensus pattern (9 bp):
ATTATGTAA
Found at i:86659902 original size:30 final size:30
Alignment explanation
Indices: 86659868--86659934 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 30
86659858 GTAAGTTATG
*
86659868 TAAATTATGTAACTTATGAAATTTGATCTT
1 TAAATTATGTAACTTATGAAATTTGAACTT
*
86659898 TAAATTATG-AAGTTATGAAATTTGAACTT
1 TAAATTATGTAACTTATGAAATTTGAACTT
86659927 TAAATTAT
1 TAAATTAT
86659935 TATGTAAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 26 0.74
30 9 0.26
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.45
Consensus pattern (30 bp):
TAAATTATGTAACTTATGAAATTTGAACTT
Found at i:86659982 original size:30 final size:30
Alignment explanation
Indices: 86659948--86660015 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
86659938 GTAAGTTATG
**
86659948 TAAATTATGTAACTTATGAAATTTGGTCTT
1 TAAATTATGTAACTTATGAAATTTGAACTT
*
86659978 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAACTTATGAAATTTGAACTT
86660008 TAAATTAT
1 TAAATTAT
86660016 TATGTAAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (30 bp):
TAAATTATGTAACTTATGAAATTTGAACTT
Found at i:86659985 original size:51 final size:51
Alignment explanation
Indices: 86659675--86659825 Score: 249
Period size: 51 Copynumber: 3.1 Consensus size: 51
86659665 GTAAGTTATG
*
86659675 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTT-AA-
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
86659724 -ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAAAT
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
*
86659772 TATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGATCTTTAAAT
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
86659823 TAT
1 TAT
86659826 GAAGTTATGA
Statistics
Matches: 95, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
46 27 0.28
47 2 0.02
48 16 0.17
49 16 0.17
51 34 0.36
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (51 bp):
TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
Found at i:86660042 original size:81 final size:81
Alignment explanation
Indices: 86659740--86660076 Score: 624
Period size: 80 Copynumber: 4.2 Consensus size: 81
86659730 TAAGTTATGT
*
86659740 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
86659805 GAAATTTGATCTTTAA
66 GAAATTTGATCTTTAA
86659821 ATTATG-AAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
86659885 GAAATTTGATCTTTAA
66 GAAATTTGATCTTTAA
86659901 ATTATG-AAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
*
86659965 GAAATTTGGTCTTTAA
66 GAAATTTGATCTTTAA
86659981 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
* *
86660046 AAAATTTGGTCTTTAA
66 GAAATTTGATCTTTAA
86660062 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
86660077 TATCATGTAA
Statistics
Matches: 252, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
80 158 0.63
81 94 0.37
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGATCTTTAA
Found at i:86660131 original size:46 final size:46
Alignment explanation
Indices: 86659980--86660138 Score: 167
Period size: 46 Copynumber: 3.3 Consensus size: 46
86659970 TTGGTCTTTA
86659980 AATTATGTAAGTTATGAAATTTGA-ACTTTAAATTATTATGTAAGTTATG
1 AATTATGTAAGTTATGAAATTTGATA-TTT-AA--ATTATGTAAGTTATG
* * * *
86660029 TAAATTATGTAACTTATAAAATTTGGTCTTTAAATTATGTAAGTTATG
1 --AATTATGTAAGTTATGAAATTTGATATTTAAATTATGTAAGTTATG
* * * *
86660077 TATCATGTAAGTTATGAAATTTGATATTTAAATTATGTAAATCATG
1 AATTATGTAAGTTATGAAATTTGATATTTAAATTATGTAAGTTATG
* *
86660123 CATTATGTAAGCTATG
1 AATTATGTAAGTTATG
86660139 TATTATGTAA
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
46 51 0.55
48 15 0.16
50 2 0.02
51 24 0.26
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.44
Consensus pattern (46 bp):
AATTATGTAAGTTATGAAATTTGATATTTAAATTATGTAAGTTATG
Found at i:86660143 original size:16 final size:16
Alignment explanation
Indices: 86660108--86660220 Score: 88
Period size: 16 Copynumber: 7.1 Consensus size: 16
86660098 TGATATTTAA
* * *
86660108 ATTATGTAAATCATGC
1 ATTATGTAAGTTATGT
*
86660124 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
*
86660140 ATTATGTAAGTTAAGT
1 ATTATGTAAGTTATGT
*
86660156 AAATTATGTAAGTTATGAA
1 --ATTATGTAAGTTATG-T
* **
86660175 ATT-TG-AACTT-TAA
1 ATTATGTAAGTTATGT
86660188 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
86660204 ATTATGTAAATTATGT
1 ATTATGTAAGTTATGT
86660220 A
1 A
86660221 AATTATGTGA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
13 4 0.05
14 3 0.04
15 8 0.10
16 45 0.58
17 3 0.04
18 14 0.18
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.43
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:86660173 original size:80 final size:78
Alignment explanation
Indices: 86660062--86660212 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 78
86660052 TGGTCTTTAA
*
86660062 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATA-TTTAAATTATGTAAATCATGCAT
1 ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTGA-ACTTTAAATTATGTAAATCATGCAT
86660126 TATGTAAGCTATGT
65 TATGTAAGCTATGT
* * * *
86660140 ATTATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGTA
1 ATTATGTAAGTTAAGT--ATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAATCATGCA
86660205 TTATGTAA
64 TTATGTAA
86660213 ATTATGTAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
78 15 0.23
79 1 0.02
80 49 0.75
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (78 bp):
ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAATCATGCATT
ATGTAAGCTATGT
Found at i:86660288 original size:17 final size:17
Alignment explanation
Indices: 86660266--86660301 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
86660256 ATATATATAT
86660266 ATATATATTACTTTTGA
1 ATATATATTACTTTTGA
86660283 ATATATATTACTTTTGA
1 ATATATATTACTTTTGA
86660300 AT
1 AT
86660302 TAGAAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATATTACTTTTGA
Found at i:86661766 original size:14 final size:14
Alignment explanation
Indices: 86661747--86661775 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86661737 ATATAATTTA
86661747 ATTTTACTTCATAT
1 ATTTTACTTCATAT
86661761 ATTTTACTTCATAT
1 ATTTTACTTCATAT
86661775 A
1 A
86661776 ATTATTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTACTTCATAT
Found at i:86663974 original size:37 final size:37
Alignment explanation
Indices: 86663869--86663977 Score: 128
Period size: 37 Copynumber: 2.9 Consensus size: 37
86663859 TGCACGGGAA
* *
86663869 GAAGGCGATAGAGGAGATGGGTTGCAATGCACGGGGC
1 GAAGGCGATGGAGGAGATGGGTTGCAATGCATGGGGC
* * * * * *
86663906 AAAGGCGATGAAGGGGATGGTTTGCGATGCATGGGGG
1 GAAGGCGATGGAGGAGATGGGTTGCAATGCATGGGGC
* *
86663943 GAAGGCGACGGAGTAGATGGGTTGCAATGCATGGG
1 GAAGGCGATGGAGGAGATGGGTTGCAATGCATGGG
86663978 AGATTTGGGG
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.26, C:0.11, G:0.47, T:0.17
Consensus pattern (37 bp):
GAAGGCGATGGAGGAGATGGGTTGCAATGCATGGGGC
Found at i:86664826 original size:15 final size:15
Alignment explanation
Indices: 86664803--86664834 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86664793 AAATAATAAT
86664803 TTATATATATTTATC
1 TTATATATATTTATC
*
86664818 TTATTTATATTTATC
1 TTATATATATTTATC
86664833 TT
1 TT
86664835 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:86664942 original size:21 final size:21
Alignment explanation
Indices: 86664896--86664944 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
86664886 TCATAAACAC
* *
86664896 TAAACCATGAACCCCAAACCT
1 TAAACCCTAAACCCCAAACCT
* *
86664917 CAAACCCTAAACCCCAAACTT
1 TAAACCCTAAACCCCAAACCT
86664938 TAAACCC
1 TAAACCC
86664945 CAAAATCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.41, G:0.02, T:0.14
Consensus pattern (21 bp):
TAAACCCTAAACCCCAAACCT
Found at i:86665930 original size:105 final size:104
Alignment explanation
Indices: 86665745--86665939 Score: 275
Period size: 105 Copynumber: 1.9 Consensus size: 104
86665735 CTCTATAGCC
* * * * *
86665745 ACTTTTGCGGTGTTTTTATAGAGGCACCGCTAATTCTTATATATTGCGGCGTTTTTAGTAAAACG
1 ACTTTTGCGGCGTTTTTAGAGAAGCACCGCTAATTCTGATATATTGCGGCGTTTTTAGTAAAACA
86665810 CCACTAATGCCTCTATAGCTACATTATCGTTTCTCTCAAG
66 CCACTAATGCCTCTATAGCT-CATTATCGTTTCTCTCAAG
* * * *
86665850 ACTTTTGTGGCGTTTTTAGAGAAGCGCCGCTAATTCTGATATATTGCGG-TTTTTTAAGTGAAAC
1 ACTTTTGCGGCGTTTTTAGAGAAGCACCGCTAATTCTGATATATTGCGGCGTTTTT-AGTAAAAC
*
86665914 ACCACTAATGCTTCTATAGCTCATTA
65 ACCACTAATGCCTCTATAGCTCATTA
86665940 ACATACGTCA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
104 10 0.13
105 69 0.87
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (104 bp):
ACTTTTGCGGCGTTTTTAGAGAAGCACCGCTAATTCTGATATATTGCGGCGTTTTTAGTAAAACA
CCACTAATGCCTCTATAGCTCATTATCGTTTCTCTCAAG
Found at i:86666402 original size:89 final size:90
Alignment explanation
Indices: 86666274--86666443 Score: 288
Period size: 89 Copynumber: 1.9 Consensus size: 90
86666264 AAGCTACAAG
* * *
86666274 TAGCAAATCTTATCTCTCTGAAAGTTGTAGCAGAGCAGATTAAATCTACAAAACTTATCTCCCTA
1 TAGCAAATATTATCTCTCTGAAAGTTGTAACAGAGCAGATTAAATCTACAAAACTTAACTCCCTA
*
86666339 AATTTGCAGTGGAGCAGATTGTAGA
66 AAGTTGCAGTGGAGCAGATTGTAGA
*
86666364 TAGCAAATATTATCTCTCT-AAAGTTGTAATAGAGCAGATTAAATCTACAAAACTTAACTCCCTA
1 TAGCAAATATTATCTCTCTGAAAGTTGTAACAGAGCAGATTAAATCTACAAAACTTAACTCCCTA
86666428 AAGTTGCAGTGGAGCA
66 AAGTTGCAGTGGAGCA
86666444 TATTAAAGCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 57 0.76
90 18 0.24
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (90 bp):
TAGCAAATATTATCTCTCTGAAAGTTGTAACAGAGCAGATTAAATCTACAAAACTTAACTCCCTA
AAGTTGCAGTGGAGCAGATTGTAGA
Found at i:86666583 original size:96 final size:96
Alignment explanation
Indices: 86666191--86666859 Score: 489
Period size: 96 Copynumber: 7.2 Consensus size: 96
86666181 TCTTGTAGTG
* * * * * * *
86666191 TCTCCCTGAAGTTGTAGTGGAGAAGATTGAATAT-GCAAATCTTATTTCCTTAAAGTTACAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
86666255 AACAGATTAAAGCTACAAG-TAGCAAATCTTA
66 AACAGATTAAAGCTACAAGTTA-CAAATCTTA
* * ** ** * * * * * *
86666286 TCTCTCTGAAAGTTGTAGCAGAGCAGATTAAATCTA-CAAAACTTATCTCCCTAAATTTGCAGTG
1 TCTCCCTG-AAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTG
* * *
86666350 GAGCAGATT---G-T---AGATAGCAAATATTA
65 GAACAGATTAAAGCTACAAGTTA-CAAATCTTA
* * * * * ** * * ** * *
86666376 TCTCTCTAAAGTTGTAATAGAGCAGATTAAATCTA-CAAAACTTAACTCCCTAAAGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
* *
86666440 AGCATATTAAAGC--C-----ACAAATCTTA
66 AACAGATTAAAGCTACAAGTTACAAATCTTA
* * *
86666464 TCTCCCTGAAGTTGCAGTGGAGCATATTAAAGGTAGCGAATCTTATTTCCCTGAAGTTATAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
* *
86666529 AATAGATTAAAGCTATAAGTTACAAATCTTA
66 AACAGATTAAAGCTACAAGTTACAAATCTTA
* * * * *
86666560 TCTCCCTGAAGATGCAGTAGAGCAGATTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAATGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
* * *
86666625 AACATATTAAAGCTACAAGTTACATATCCTA
66 AACAGATTAAAGCTACAAGTTACAAATCTTA
* ** * * * * *
86666656 TCTCCTTGAACATGCAATGGAGTAGATTAAAG--A--GAA-CTTATCTCCCTAAAGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
* * ** * *
86666716 ---AG--T--GGGTTGAAGCTACAAATCTCA
66 AACAGATTAAAGCTACAAGTTACAAATCTTA
* * *
86666740 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATAGCAAATCTTATTTCCCTGAAGTTACAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
86666805 AACAGATTAAAGCTACAAGTTACAAATCTTA
66 AACAGATTAAAGCTACAAGTTACAAATCTTA
*
86666836 TCTCCCTAAAGTTGCAGTGGAGCA
1 TCTCCCTGAAGTTGCAGTGGAGCA
86666860 AATTGAAGCG
Statistics
Matches: 458, Mismatches: 88, Indels: 55
0.76 0.15 0.09
Matches are distributed among these distances:
84 38 0.08
86 2 0.00
88 38 0.08
89 115 0.25
90 18 0.04
91 21 0.05
92 7 0.02
93 1 0.00
94 2 0.00
95 7 0.02
96 209 0.46
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (96 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGG
AACAGATTAAAGCTACAAGTTACAAATCTTA
Found at i:86666587 original size:51 final size:46
Alignment explanation
Indices: 86666191--86666859 Score: 352
Period size: 45 Copynumber: 14.5 Consensus size: 46
86666181 TCTTGTAGTG
* * * *
86666191 TCTCCCTGAAGTTGTAGTGGAGAAGATTGAATAT-G-CAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * * * * *
86666235 TTTCCTTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTAGCAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG-A-CAAATCTTA
* * ** ** *
86666286 TCTCTCTGAAAGTTGTAGCAGAGCAGATT-AA-ATCTACAAAACTTA
1 TCTCCCTG-AAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * ** *
86666331 TCTCCCTAAATTTGCAGTGGAGCAGATTGTAGATAG-CAAATATTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * * * * ** *
86666376 TCTCTCTAAAGTTGTAATAGAGCAGATT-AA-ATCTACAAAACTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * * **
86666420 ACTCCCTAAAGTTGCAGTGGAGCATATTAAAG--CCACAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * *
86666464 TCTCCCTGAAGTTGCAGTGGAGCATATTAAAGGTAG-CGAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* ** **
86666509 TTTCCCTGAAGTTATAGTGGAATAGATTAAAGCTATAAGTTACAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--AT-AG--ACAAATCTTA
* * * *
86666560 TCTCCCTGAAGATGCAGTAGAGCAGATTGAAGATAG-CGAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * * * * * *
86666605 TTTCCCTGAAGTTGCAATGGAACATATTAAAGCTACAAGTTACATATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG--ACAAATCTTA
* ** * *
86666656 TCTCCTTGAACATGCAATGGAGTAGATTAAAG--AG---AA-CTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* ** * * * *
86666696 TCTCCCTAAAGTTGCAGTGGAGTGGGTTGAAGCT--ACAAATCTCA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* *
86666740 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATAG-CAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
* * * *
86666785 TTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG--ACAAATCTTA
*
86666836 TCTCCCTAAAGTTGCAGTGGAGCA
1 TCTCCCTGAAGTTGCAGTGGAGCA
86666860 AATTGAAGCG
Statistics
Matches: 464, Mismatches: 120, Indels: 75
0.70 0.18 0.11
Matches are distributed among these distances:
40 27 0.06
41 1 0.00
43 4 0.01
44 140 0.30
45 149 0.32
46 6 0.01
47 3 0.01
48 10 0.02
49 2 0.00
51 107 0.23
52 15 0.03
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (46 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGACAAATCTTA
Found at i:86666874 original size:51 final size:50
Alignment explanation
Indices: 86666729--86666875 Score: 151
Period size: 51 Copynumber: 3.0 Consensus size: 50
86666719 GGGTTGAAGC
* * * *
86666729 TACAAATCTCATCTCCCTAAAGTTGTAGTGGAGCAGATTAA-AGA-TAG-
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAGCGACAAGT
* * * * *
86666776 --CAAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGT
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAGCGACAAGT
*
86666825 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCGACAAGT
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAGCGACAAGT
86666876 CCTATACCTC
Statistics
Matches: 78, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
45 31 0.40
46 2 0.03
47 1 0.01
48 2 0.03
51 42 0.54
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (50 bp):
TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAGCGACAAGT
Found at i:86666968 original size:94 final size:94
Alignment explanation
Indices: 86666191--86666968 Score: 363
Period size: 96 Copynumber: 8.4 Consensus size: 94
86666181 TCTTGTAGTG
* * * * * * * * * *
86666191 TCTCCCTGAAGTTGTAGTGGAGAAGATTGAATATGCAAATCTTATTTCCTTAAAGTTACAGTGGA
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCTATTACCCTGAAGTTACAGTGGA
86666256 ACAGATTAAAGCTACAAGTAGCAAATCTTA
66 ACAGATTAAAGCTACAAGTA-CAAATCTTA
* ** ** ** * * * *
86666286 TCTCTCTGAAAGTTGTAGCAGAGCAGATTAAATCTACAAAACTTATCT-CCCTAAATTTGCAGTG
1 TCTCCCT-AAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCTAT-TACCCTGAAGTTACAGTG
* * *
86666350 GAGCAGATT---G-TA-GA-TAGCAAATATTA
64 GAACAGATTAAAGCTACAAGTA-CAAATCTTA
* * * ** ** * * * *
86666376 TCTCTCTAAAGTTGTAATAGAGCAGATTAAATCTACAAAACTTAACT-CCCTAAAGTTGCAGTGG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCT-ATTACCCTGAAGTTACAGTGG
* *
86666440 AGCATATTAAAGC--C----ACAAATCTTA
65 AACAGATTAAAGCTACAAGTACAAATCTTA
* * * * * * *
86666464 TCTCCCTGAAGTTGCAGTGGAGCATATTAAAGGTAGCGAA-TCTTATTTCCCTGAAGTTATAGTG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATA-C-AAGTCCTATTACCCTGAAGTTACAGTG
* *
86666528 GAATAGATTAAAGCTATAAGTTACAAATCTTA
64 GAACAGATTAAAGCTACAAG-TACAAATCTTA
* * * * * * * * *
86666560 TCTCCCTGAAGATGCAGTAGAGCAGATTGAAGATAGCGAA-TCTTATTTCCCTGAAGTTGCAATG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATA-C-AAGTCCTATTACCCTGAAGTTACAGTG
* * *
86666624 GAACATATTAAAGCTACAAGTTACATATCCTA
64 GAACAGATTAAAGCTACAAG-TACAAATCTTA
* * ** * * * * * * *
86666656 TCTCCTTGAACATGCAATGGAGTAGATTAAAG--AGAA--CTTATCT-CCCTAAAGTTGCAGTGG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCTAT-TACCCTGAAGTTACAGTGG
*** * * *
86666716 AGTGGGTTGAAG---C---TACAAATCTCA
65 AACAGATTAAAGCTACAAGTACAAATCTTA
* * *
86666740 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATAGCAAATCTTATTTCCCTGAAGTTACAGTGG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATA-CAAGTCCTATTACCCTGAAGTTACAGTGG
86666805 AACAGATTAAAGCTACAAGTTACAAATCTTA
65 AACAGATTAAAGCTACAAG-TACAAATCTTA
* * * ** * *
86666836 TCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCGACAAGTCCTA-TACCTCTGAGGTTGCAGTGG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCTATTACC-CTGAAGTTACAGTGG
* * * * *
86666900 ATCGGATTAAATCTACCA-TAGCAAGTCTTA
65 AACAGATTAAAGCTACAAGTA-CAAATCTTA
** * *
86666930 TCTCCCTAAAGTTGTAGTGGAATAGACTAAAGTTACAAG
1 TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAG
86666969 CTACAAATCT
Statistics
Matches: 541, Mismatches: 108, Indels: 69
0.75 0.15 0.10
Matches are distributed among these distances:
84 33 0.06
86 1 0.00
87 2 0.00
88 39 0.07
89 114 0.21
90 21 0.04
91 27 0.05
92 7 0.01
93 3 0.01
94 43 0.08
95 40 0.07
96 210 0.39
97 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (94 bp):
TCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGATACAAGTCCTATTACCCTGAAGTTACAGTGGA
ACAGATTAAAGCTACAAGTACAAATCTTA
Found at i:86673950 original size:3 final size:3
Alignment explanation
Indices: 86673942--86673977 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
86673932 CCTTAAAAGT
86673942 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86673978 CCGCGTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:86674803 original size:26 final size:26
Alignment explanation
Indices: 86674767--86674850 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86674757 TCATACAAAT
*
86674767 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
86674793 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
86674819 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
86674845 TGATAA
1 TGATAA
86674851 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:86676570 original size:27 final size:26
Alignment explanation
Indices: 86676466--86676579 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
86676456 TGGAGGAAGC
* *
86676466 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
86676493 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
86676520 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
** *
86676547 GTATCTGGTAACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
86676574 GTTCTG
1 GTTCTG
86676580 TTCTGGCAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.06
27 56 0.73
28 16 0.21
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:86676573 original size:54 final size:54
Alignment explanation
Indices: 86676466--86676579 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
86676456 TGGAGGAAGC
**
86676466 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTAACTCTGCCACATATATCT
* * * *
86676520 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTAACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTAACTCTGCCACATATATCT
86676574 GTTCTG
1 GTTCTG
86676580 TTCTGGCAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTAACTCTGCCACATATATCT
Found at i:86680322 original size:112 final size:112
Alignment explanation
Indices: 86680111--86680446 Score: 471
Period size: 112 Copynumber: 3.0 Consensus size: 112
86680101 TTTTGCACCA
* *
86680111 CTTCTGTCCCCAGCACCATAATACATGCCAATGCCAATAAC-A-A-CAATGTATCCACCACCTTT
1 CTTCTGTCCCCAGCACCATAATACATGCCAATGCCAACAACAACACCAATGTATCCACCACCTCT
* *
86680173 GACAATTCTCACATTTTATCCGCAATCGGGCTATGCAAAACCATATG
66 GACAATTCTCACATTTTATCCGCAAACGGGTTATGCAAAACCATATG
* * * *
86680220 CTTCTGTCCCCATCACCATAATACTTGCCAATGCCAACAACAACACCAATGCATCCAACACCTCT
1 CTTCTGTCCCCAGCACCATAATACATGCCAATGCCAACAACAACACCAATGTATCCACCACCTCT
** *
86680285 GACAATTCTCACATTTTATTTGCAAACAGGTTATGCAAAACCATATG
66 GACAATTCTCACATTTTATCCGCAAACGGGTTATGCAAAACCATATG
* * * * *
86680332 CTTCTGTCCCTAGCACCATAATACATGTCAATCCCAAGAACAACACCAATGTATCCGCCACCTCT
1 CTTCTGTCCCCAGCACCATAATACATGCCAATGCCAACAACAACACCAATGTATCCACCACCTCT
* * * *
86680397 AACAATTCTCACATTTTATCCACAACCGGGTTATGCAACACCATATG
66 GACAATTCTCACATTTTATCCGCAAACGGGTTATGCAAAACCATATG
86680444 CTT
1 CTT
86680447 ATCCATTGAT
Statistics
Matches: 197, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
109 38 0.19
110 1 0.01
111 1 0.01
112 157 0.80
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.26
Consensus pattern (112 bp):
CTTCTGTCCCCAGCACCATAATACATGCCAATGCCAACAACAACACCAATGTATCCACCACCTCT
GACAATTCTCACATTTTATCCGCAAACGGGTTATGCAAAACCATATG
Found at i:86681734 original size:236 final size:236
Alignment explanation
Indices: 86681321--86681794 Score: 885
Period size: 236 Copynumber: 2.0 Consensus size: 236
86681311 TAGCGTGAGC
*
86681321 TCGACAGTGTGATAATATCTCTGGCGAACACCAACCCGAGCAGGTAACCGAAGTCAACAATCTAT
1 TCGACAGTGTGATAATATCTCCGGCGAACACCAACCCGAGCAGGTAACCGAAGTCAACAATCTAT
86681386 AAAATAGAGGAATGTAACAACGGAGTAAGCTTTCATAAGATTAGTAAGTCTTAAGCAATGCAAAC
66 AAAATAGAGGAATGTAACAACGGAGTAAGCTTTCATAAGATTAGTAAGTCTTAAGCAATGCAAAC
*
86681451 AAATAAACGCAATTATACTTCGATTATTCAATTTCTTAAGTGGCCATATTCTAGGTATATTGCCA
131 AAATAAACACAATTATACTTCGATTATTCAATTTCTTAAGTGGCCATATTCTAGGTATATTGCCA
*
86681516 TCTGGCTGAATACACACAAACACATAATGCACGTTCAGCAT
196 TCTGGCCGAATACACACAAACACATAATGCACGTTCAGCAT
*
86681557 TCGACAGTGTGATAATATCTCCGGCGAACTCCAACCCGAGCAGGTAACCGAAGTCAACAATCTAT
1 TCGACAGTGTGATAATATCTCCGGCGAACACCAACCCGAGCAGGTAACCGAAGTCAACAATCTAT
*
86681622 AAAATAGAGGAATGTAACAACGGAGTAAGCTTTCATAAGCTTAGTAAGTCTTAAGCAATGCAAAC
66 AAAATAGAGGAATGTAACAACGGAGTAAGCTTTCATAAGATTAGTAAGTCTTAAGCAATGCAAAC
86681687 AAATAAACACAATTATACTTCGATTATTCAATTTCTTAAGTGGCCATATTCTAGGTATATTGCCA
131 AAATAAACACAATTATACTTCGATTATTCAATTTCTTAAGTGGCCATATTCTAGGTATATTGCCA
* *
86681752 TCTGGCCGATTACACACAAACACATAATGCATGTTCAGCAT
196 TCTGGCCGAATACACACAAACACATAATGCACGTTCAGCAT
86681793 TC
1 TC
86681795 TTATCACACT
Statistics
Matches: 231, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
236 231 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (236 bp):
TCGACAGTGTGATAATATCTCCGGCGAACACCAACCCGAGCAGGTAACCGAAGTCAACAATCTAT
AAAATAGAGGAATGTAACAACGGAGTAAGCTTTCATAAGATTAGTAAGTCTTAAGCAATGCAAAC
AAATAAACACAATTATACTTCGATTATTCAATTTCTTAAGTGGCCATATTCTAGGTATATTGCCA
TCTGGCCGAATACACACAAACACATAATGCACGTTCAGCAT
Found at i:86682556 original size:43 final size:43
Alignment explanation
Indices: 86682508--86682705 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
86682498 CCGGCATTAC
86682508 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86682551 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
86682594 GCCTGCTAGGTACAAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
86682637 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
86682680 GCCTGCTAGGCATGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
86682706 TAATACCAGC
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:86682749 original size:129 final size:128
Alignment explanation
Indices: 86682495--86682730 Score: 343
Period size: 129 Copynumber: 1.9 Consensus size: 128
86682485 ACATATCATT
* *
86682495 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
* ** *
86682560 GCACGAAGGCCCGAATACACATCACTGGCACGAAGCCTGCTAGGTACAAAGGCCCGAATACACA
66 GCACGAAGGCCCAAATACACATCACCAGCACGAAGCCTGC-AGGGACAAAGGCCCGAATACACA
*
86682624 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAG
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
* * * *
86682689 GCATGAAGGCCCAAATATA-AT-ACCAGCACTAGGCCTGC-GGGA
66 GCACGAAGGCCCAAATACACATCACCAGCACGAAGCCTGCAGGGA
86682731 TTTATCCCGA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
125 3 0.03
127 13 0.14
128 2 0.02
129 78 0.81
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.13
Consensus pattern (128 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
GCACGAAGGCCCAAATACACATCACCAGCACGAAGCCTGCAGGGACAAAGGCCCGAATACACA
Found at i:86682751 original size:38 final size:38
Alignment explanation
Indices: 86682698--86682781 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
86682688 GGCATGAAGG
* * * *
86682698 CCCAAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCAAATATAATACCAGCACGAAGCCTACGGGATTTAA
*
86682736 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCAAATATAATACCAGCACGAAGCCTACGGGATTTAA
86682774 CCCAAATA
1 CCCAAATA
86682782 CACATAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (38 bp):
CCCAAATATAATACCAGCACGAAGCCTACGGGATTTAA
Found at i:86691474 original size:28 final size:28
Alignment explanation
Indices: 86691405--86691505 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86691395 GACAAGATTG
* * * *
86691405 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
86691435 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86691463 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
86691492 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86691506 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86696453 original size:21 final size:22
Alignment explanation
Indices: 86696423--86696471 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
86696413 TTACCCCATC
*
86696423 CTTT-TTCTTCATTTTTCT-TT
1 CTTTCTTCTTCACTTTTCTTTT
*
86696443 CTTTCTTCTTCCCTTTTCTTTT
1 CTTTCTTCTTCACTTTTCTTTT
86696465 CTTTCTT
1 CTTTCTT
86696472 TTTTTTCCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 4 0.16
21 12 0.48
22 9 0.36
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (22 bp):
CTTTCTTCTTCACTTTTCTTTT
Found at i:86696494 original size:26 final size:25
Alignment explanation
Indices: 86696429--86696490 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
86696419 CATCCTTTTT
86696429 CTTCATTTTTCTTTCTTTCTTCTTCC
1 CTTC-TTTTTCTTTCTTTCTTCTTCC
* *
86696455 CTTTTCTTTTCTTTCTTT-TTTTTCCC
1 CTTCT-TTTTCTTTCTTTCTTCTT-CC
86696481 CTTCTTTTTC
1 CTTCTTTTTC
86696491 CTTTTCCCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (25 bp):
CTTCTTTTTCTTTCTTTCTTCTTCC
Found at i:86696495 original size:19 final size:19
Alignment explanation
Indices: 86696473--86696509 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86696463 TTCTTTCTTT
* *
86696473 TTTTTCCCCTTCTTTTTCC
1 TTTTCCCCCTCCTTTTTCC
86696492 TTTTCCCCCTCCTTTTTC
1 TTTTCCCCCTCCTTTTTC
86696510 TTTCATCCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTCCCCCTCCTTTTTCC
Found at i:86696512 original size:18 final size:17
Alignment explanation
Indices: 86696470--86696512 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
86696460 CTTTTCTTTC
*
86696470 TTTT-TTTTCCCCTTCT
1 TTTTCTTTTCCCCTCCT
86696486 TTTTCCTTTTCCCCCTCCT
1 TTTT-CTTTT-CCCCTCCT
86696505 TTTTCTTT
1 TTTTCTTT
86696513 CATCCTCCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTCTTTTCCCCTCCT
Found at i:86698511 original size:29 final size:28
Alignment explanation
Indices: 86698456--86698512 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
86698446 TCAATTTGTT
*
86698456 TCTCTTTTTACTTTATTTTTATTTTTTCA
1 TCTCTTTTTACTTTA-TTTTATATTTTCA
86698485 TCTCTTTTTAACTTTA-TTTATCATTTTC
1 TCTCTTTTT-ACTTTATTTTAT-ATTTTC
86698513 CTACAAGACT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 5 0.20
29 14 0.56
30 6 0.24
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (28 bp):
TCTCTTTTTACTTTATTTTATATTTTCA
Found at i:86710993 original size:16 final size:16
Alignment explanation
Indices: 86710972--86711004 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86710962 TCGTGTATGA
86710972 TTACTTGTGGATTATT
1 TTACTTGTGGATTATT
86710988 TTACTTGTGGATTATT
1 TTACTTGTGGATTATT
86711004 T
1 T
86711005 CGAACATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.18, T:0.58
Consensus pattern (16 bp):
TTACTTGTGGATTATT
Found at i:86720616 original size:253 final size:253
Alignment explanation
Indices: 86720168--86720665 Score: 692
Period size: 253 Copynumber: 2.0 Consensus size: 253
86720158 ATGCTACTCT
* * * * *
86720168 TTTTAGGTATGCATTGCACTAGACTTACTCAATTGCTGTAAAAAATAAGGTAAATGATTCCATCA
1 TTTTAGGTACGCATTGCACTAGACTTACCCAATTGCTATAAAAAATAAGGTAAATAATTCCAGCA
* * * *
86720233 TCAAGCCATTTTGTAATTTCCTTCTTAACAACTTTATTCATCTTCTCGTTTAATCTTCTTTGCTG
66 TCAAGCCAGTTTATAATTTCCTTCTTAACAACTTCATTCATCTTCTCATTTAATCTTCTTTGCTG
* * * * *
86720298 CTCAATTGATTGCTTGCTTTAATCTTCCAACTTGATTTTGTGCATGAAAAAAGATGGACTAATGC
131 CTCAATCGATTGCTTACCTTAATCTTCCAACTTAATTTTGTACATGAAAAAAGATGGACTAATGC
* * *
86720363 CTCTAATATCAGCAATACTCCAAGCAATAGCTTATTTATGTTGCTTAAGATTCCATTC
196 CTCGAATATCAGCAATACTCCAAGCAATAGCTCATTTATGTTACTTAAGATTCCATTC
** * * * *
86720421 TTTTAGGTACGCATTTTACTGGACTTACCCAATTGCTATCAGAAATAGGGTAAATAATTCCAGCA
1 TTTTAGGTACGCATTGCACTAGACTTACCCAATTGCTATAAAAAATAAGGTAAATAATTCCAGCA
* * *
86720486 TCAAGCCAGTTTAT-ATTATCTTTCTTAACGACTTCCTTCATCTTCTCATTTAATCTTCTTTGCT
66 TCAAGCCAGTTTATAATT-TCCTTCTTAACAACTTCATTCATCTTCTCATTTAATCTTCTTTGCT
* * * *
86720550 GCTCAATCGATTGCTTACCTTCATCTTCCAACTTAATTTTTTACATGCAAAGAGATGGACTAATG
130 GCTCAATCGATTGCTTACCTTAATCTTCCAACTTAATTTTGTACATGAAAAAAGATGGACTAATG
* *
86720615 CCTCGAATATCAGCAATACTCCAAGCAGTAGCTCGTTTATGTTACTTAAGA
195 CCTCGAATATCAGCAATACTCCAAGCAATAGCTCATTTATGTTACTTAAGA
86720666 ATATGGACCA
Statistics
Matches: 212, Mismatches: 32, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
252 3 0.01
253 209 0.99
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.38
Consensus pattern (253 bp):
TTTTAGGTACGCATTGCACTAGACTTACCCAATTGCTATAAAAAATAAGGTAAATAATTCCAGCA
TCAAGCCAGTTTATAATTTCCTTCTTAACAACTTCATTCATCTTCTCATTTAATCTTCTTTGCTG
CTCAATCGATTGCTTACCTTAATCTTCCAACTTAATTTTGTACATGAAAAAAGATGGACTAATGC
CTCGAATATCAGCAATACTCCAAGCAATAGCTCATTTATGTTACTTAAGATTCCATTC
Found at i:86729490 original size:34 final size:34
Alignment explanation
Indices: 86729447--86729514 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
86729437 GATTAAATAC
86729447 TCAACTTGGAATGTTTGAAGCTCTAATGTTCTTT
1 TCAACTTGGAATGTTTGAAGCTCTAATGTTCTTT
86729481 TCAACTTGGAATGTTTGAAGCTCTAATGTTCTTT
1 TCAACTTGGAATGTTTGAAGCTCTAATGTTCTTT
86729515 CAGTTGAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (34 bp):
TCAACTTGGAATGTTTGAAGCTCTAATGTTCTTT
Found at i:86731926 original size:39 final size:39
Alignment explanation
Indices: 86731814--86732074 Score: 321
Period size: 39 Copynumber: 6.6 Consensus size: 39
86731804 TCGTTCAAAC
* * * * *
86731814 GCCTTCGGGACATAGCCC-GATTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGA-TATCATATCTCGCACAATT
* * * * *
86731854 GCCTTTGGGACTTAACCCGGATATCACAACTCGCACAATC
1 GCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAATT
86731894 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
86731933 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
* *
86731972 GCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAATT
* * *
86732011 GCCTTCGGGCTTAGCCCAGATATCACAAT-TCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAATT
86732050 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86732075 CAATTCGCAC
Statistics
Matches: 202, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 161 0.80
40 39 0.19
41 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
Found at i:86732015 original size:117 final size:118
Alignment explanation
Indices: 86731814--86732074 Score: 357
Period size: 117 Copynumber: 2.2 Consensus size: 118
86731804 TCGTTCAAAC
* * *
86731814 GCCTTCGGGACATAGCCC-GATTATGATAACCCGCACAAATGCCTTTGGGACTTAACCCGGATAT
1 GCCTTCGGG-CTTAGCCCGGA-TATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
* *
86731878 CACAACTCGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAATT
64 CACAACTCGCACAATCGCCTTCGGGCTTAGCCCAGATATCACAAT-TCGCACAATT
* * * *
86731933 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* * * *
86731997 CAATTCGCACATTTGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACATTT
66 CAACTCGCACAATCGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACAATT
86732050 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86732075 CAATTCGCAC
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
117 84 0.66
118 32 0.25
119 11 0.09
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (118 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATCGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACAATT
Found at i:86732087 original size:39 final size:39
Alignment explanation
Indices: 86731845--86732085 Score: 351
Period size: 39 Copynumber: 6.2 Consensus size: 39
86731835 TATGATAACC
* * * *
86731845 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
86731885 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
*
86731924 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
86731963 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
* *
86732002 CGCACATTTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
86732041 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
86732080 CGCACA
1 CGCACA
86732086 TTCATACACA
Statistics
Matches: 188, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 170 0.90
40 17 0.09
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:86741003 original size:40 final size:40
Alignment explanation
Indices: 86740897--86741080 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
86740887 TGCTGGAAAT
* * * * * **
86740897 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
86740937 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
86740977 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
86741015 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
86741056 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
86741081 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:86749098 original size:40 final size:40
Alignment explanation
Indices: 86748992--86749175 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
86748982 TGCTGGAAAT
* * * * * **
86748992 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
86749032 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
86749072 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
86749110 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
86749151 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
86749176 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:86751343 original size:39 final size:39
Alignment explanation
Indices: 86751231--86751452 Score: 293
Period size: 39 Copynumber: 5.6 Consensus size: 39
86751221 TCGTTCAAAC
* * * * * *
86751231 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAATT
* * * *
86751271 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATC
1 GCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAATT
*
86751311 ACCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
86751350 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
* *
86751389 GCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAATT
86751428 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86751453 CAATTCGCAC
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 123 0.75
40 42 0.25
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
Found at i:86751433 original size:117 final size:119
Alignment explanation
Indices: 86751231--86751452 Score: 331
Period size: 117 Copynumber: 1.9 Consensus size: 119
86751221 TCGTTCAAAC
* *
86751231 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
86751296 ACAACTCGCACAATCACCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
66 ACAACTCGCACAATCACCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
* * * * *
86751350 GCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
* * **
86751413 ACAATTCGCACATTTGCCTTCGGGCTTAGCCCGGATATCA
66 ACAACTCGCACAATCACCTTCGGGCTTAGCCCGGATATCA
86751453 CAATTCGCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 50 0.54
118 33 0.36
119 9 0.10
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (119 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAATCACCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATT
Found at i:86757189 original size:24 final size:23
Alignment explanation
Indices: 86757156--86757241 Score: 91
Period size: 24 Copynumber: 3.6 Consensus size: 23
86757146 CATTAATAAG
* *
86757156 AAAATAATAATAATAAACTAAAT
1 AAAATAAAAATAATAAAATAAAT
* *
86757179 ATAATAAATAAAAATAAAAATAAAGT
1 AAAATAAA-AATAAT-AAAATAAA-T
*
86757205 AAAATAAAAATAACAAAATAAAAT
1 AAAATAAAAATAATAAAAT-AAAT
86757229 AAAATAAAAATAA
1 AAAATAAAAATAA
86757242 AGAAAGAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
23 6 0.12
24 24 0.46
25 14 0.27
26 8 0.15
ACGTcount: A:0.76, C:0.02, G:0.01, T:0.21
Consensus pattern (23 bp):
AAAATAAAAATAATAAAATAAAT
Found at i:86757201 original size:30 final size:29
Alignment explanation
Indices: 86757161--86757242 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
86757151 ATAAGAAAAT
* *
86757161 AATAATAATAAACTAAATATAATAAATAA-A
1 AATAAAAATAAAATAAA-ATAA-AAATAACA
*
86757191 AATAAAAATAAAGTAAAATAAAAATAACA
1 AATAAAAATAAAATAAAATAAAAATAACA
86757220 AA-ATAAAATAAAATAAAAATAAA
1 AATA-AAAATAAAAT-AAAATAAA
86757243 GAAAGAACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 7 0.15
29 16 0.35
30 23 0.50
ACGTcount: A:0.76, C:0.02, G:0.01, T:0.21
Consensus pattern (29 bp):
AATAAAAATAAAATAAAATAAAAATAACA
Found at i:86757202 original size:16 final size:16
Alignment explanation
Indices: 86757181--86757242 Score: 69
Period size: 16 Copynumber: 4.0 Consensus size: 16
86757171 AACTAAATAT
86757181 AATAAATAAAAATAAA
1 AATAAATAAAAATAAA
86757197 AATAAAGT-AAAATAAA
1 AATAAA-TAAAAATAAA
*
86757213 AAT-AA-CAAAAT-AA
1 AATAAATAAAAATAAA
86757226 AATAAAATAAAAATAAA
1 AAT-AAATAAAAATAAA
86757243 GAAAGAACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
13 5 0.13
14 5 0.13
15 4 0.10
16 22 0.56
17 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (16 bp):
AATAAATAAAAATAAA
Found at i:86757242 original size:6 final size:6
Alignment explanation
Indices: 86757156--86757242 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
86757146 CATTAATAAG
* * *
86757156 AAAATA ATAATA ATAAACTA AATATA ATAAATA AAAATA AAAAT- AAAGT-
1 AAAATA AAAATA A-AAA-TA AAAATA A-AAATA AAAATA AAAATA AAAATA
86757205 AAAATA AAAATA ACAAA-A TAAAAT- AAAATA AAAATA AA
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AA
86757243 GAAAGAACAA
Statistics
Matches: 67, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
5 13 0.19
6 38 0.57
7 13 0.19
8 3 0.04
ACGTcount: A:0.76, C:0.02, G:0.01, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:86757581 original size:26 final size:26
Alignment explanation
Indices: 86757535--86757595 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
86757525 GGGAGAGGAT
**
86757535 AGGGAGAGGTCAAAACAACGATGTGA
1 AGGGAGAGGTCAAAACAACGACATGA
* **
86757561 AGGGAGAGGTCGAAATGACGACATGA
1 AGGGAGAGGTCAAAACAACGACATGA
*
86757587 AGAGAGAGG
1 AGGGAGAGG
86757596 GGAAGGAGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.39, T:0.10
Consensus pattern (26 bp):
AGGGAGAGGTCAAAACAACGACATGA
Found at i:86760207 original size:17 final size:17
Alignment explanation
Indices: 86760185--86760236 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
86760175 CATTTATCAT
86760185 TTATCATTTATCGGGCA
1 TTATCATTTATCGGGCA
*
86760202 TTATCATTTATTTCAGGCA
1 TTATCATTTA--TCGGGCA
*
86760221 TTATCACTTATCGGGC
1 TTATCATTTATCGGGC
86760237 TTTGTCGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.50
19 15 0.50
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:86760212 original size:7 final size:7
Alignment explanation
Indices: 86760170--86760196 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86760160 AAATAACATT
86760170 TTTATCA
1 TTTATCA
86760177 TTTATCA
1 TTTATCA
86760184 TTTATCA
1 TTTATCA
86760191 TTTATC
1 TTTATC
86760197 GGGCATTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATCA
Found at i:86760222 original size:19 final size:18
Alignment explanation
Indices: 86760185--86760231 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
86760175 CATTTATCAT
*
86760185 TTATCATTTA-TCGGGCA
1 TTATCATTTATTCAGGCA
86760202 TTATCATTTATTTCAGGCA
1 TTATCATTTA-TTCAGGCA
*
86760221 TTATCACTTAT
1 TTATCATTTAT
86760232 CGGGCTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 10 0.38
18 1 0.04
19 15 0.58
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.47
Consensus pattern (18 bp):
TTATCATTTATTCAGGCA
Found at i:86763806 original size:13 final size:13
Alignment explanation
Indices: 86763788--86763812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86763778 CCTCAACTTA
86763788 GTTGTTTTAGCTG
1 GTTGTTTTAGCTG
86763801 GTTGTTTTAGCT
1 GTTGTTTTAGCT
86763813 AGTGGGAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.28, T:0.56
Consensus pattern (13 bp):
GTTGTTTTAGCTG
Found at i:86766553 original size:31 final size:31
Alignment explanation
Indices: 86766517--86766581 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
86766507 AGAATGGGTC
86766517 ATTCAAAACCCAAAAAAGAAAAAATAATGTT
1 ATTCAAAACCCAAAAAAGAAAAAATAATGTT
86766548 ATTCAAAACCCAAAAAAGAAAAAATAATGTT
1 ATTCAAAACCCAAAAAAGAAAAAATAATGTT
86766579 ATT
1 ATT
86766582 TGCAGAATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.60, C:0.12, G:0.06, T:0.22
Consensus pattern (31 bp):
ATTCAAAACCCAAAAAAGAAAAAATAATGTT
Found at i:86770600 original size:22 final size:26
Alignment explanation
Indices: 86770570--86770618 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 26
86770560 TACATGTGTA
86770570 TATTCTTTATATA-GT-AT-TATTAT
1 TATTCTTTATATATGTCATATATTAT
86770593 TATT-TTTATATATGTCATATATTAT
1 TATTCTTTATATATGTCATATATTAT
86770618 T
1 T
86770619 GTACTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.35
23 6 0.26
24 2 0.09
25 7 0.30
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATTCTTTATATATGTCATATATTAT
Found at i:86773111 original size:66 final size:64
Alignment explanation
Indices: 86773034--86773158 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 64
86773024 TAAATTGACA
* * * * *
86773034 ACTTGATCTTTCAAAATGCATCAAAAAGAATCTCAAACTTCTTTTAAAAAAAGCAATTAAGACTC
1 ACTTGAACTTTCAAAATGCATAAAAAAGAACCTCAAA-AT-TTCTAAAAAAAGCAATTAAGACTC
86773099 T
64 T
* *
86773100 ACTTGAACTTTCAAAATGCATAAAAAAGACCCTCAAAATTTCTCAAAAAAGCAATTAAG
1 ACTTGAACTTTCAAAATGCATAAAAAAGAACCTCAAAATTTCTAAAAAAAGCAATTAAG
86773159 CCCATGCCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
64 18 0.35
65 1 0.02
66 33 0.63
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.27
Consensus pattern (64 bp):
ACTTGAACTTTCAAAATGCATAAAAAAGAACCTCAAAATTTCTAAAAAAAGCAATTAAGACTCT
Found at i:86773193 original size:11 final size:10
Alignment explanation
Indices: 86773168--86773342 Score: 60
Period size: 10 Copynumber: 17.8 Consensus size: 10
86773158 GCCCATGCCC
*
86773168 TTATTAAAAA
1 TTATAAAAAA
86773178 TTATAAAAAGA
1 TTATAAAAA-A
*
86773189 TTATAAATAA
1 TTATAAAAAA
* *
86773199 TAAATAATAAA
1 T-TATAAAAAA
*
86773210 TTTTAGAAAAA
1 TTATA-AAAAA
*
86773221 TTAT--TAAA
1 TTATAAAAAA
*
86773229 TTTTAATAAAA
1 TTATAA-AAAA
*
86773240 ATATAAAAAA
1 TTATAAAAAA
*
86773250 TT-T-AAAAT
1 TTATAAAAAA
*
86773258 TTATTAAAAA
1 TTATAAAAAA
* ****
86773268 TTAGAATTTT
1 TTATAAAAAA
*
86773278 TTTTATAAAAA
1 TTATA-AAAAA
*
86773289 TTGTAAAAAA
1 TTATAAAAAA
86773299 --ATAAAAAA
1 TTATAAAAAA
* **
86773307 TTGTAAAATT
1 TTATAAAAAA
86773317 TTAT-AAAAA
1 TTATAAAAAA
*
86773326 TCATAAAAAA
1 TTATAAAAAA
86773336 -TATAAAA
1 TTATAAAA
86773343 TGCATCAAAA
Statistics
Matches: 114, Mismatches: 39, Indels: 25
0.64 0.22 0.14
Matches are distributed among these distances:
8 19 0.17
9 14 0.12
10 46 0.40
11 35 0.31
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.37
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:86773221 original size:18 final size:19
Alignment explanation
Indices: 86773200--86773246 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
86773190 TATAAATAAT
86773200 AAATAATAAATTTT-AGAA
1 AAATAATAAATTTTAAGAA
* *
86773218 AAATTATTAAATTTTAATAA
1 AAA-TAATAAATTTTAAGAA
86773238 AAAT-ATAAA
1 AAATAATAAA
86773247 AAATTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 7 0.29
19 11 0.46
20 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AAATAATAAATTTTAAGAA
Found at i:86773611 original size:10 final size:10
Alignment explanation
Indices: 86773598--86773687 Score: 64
Period size: 10 Copynumber: 9.4 Consensus size: 10
86773588 CTTTATAAAA
86773598 TTTTATAATT
1 TTTTATAATT
86773608 TTTT-T-ATAT
1 TTTTATAAT-T
* *
86773617 TTCTAT-ATA
1 TTTTATAATT
86773626 TTTTATAATT
1 TTTTATAATT
**
86773636 TTTTACGA-T
1 TTTTATAATT
**
86773645 TTTTATAAAA
1 TTTTATAATT
*
86773655 TTTTACAATT
1 TTTTATAATT
86773665 TTTTAT-ATT
1 TTTTATAATT
*
86773674 TTTTATGATT
1 TTTTATAATT
86773684 TTTT
1 TTTT
86773688 TCCAAATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
8 2 0.03
9 26 0.42
10 34 0.55
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTATAATT
Found at i:86773637 original size:28 final size:28
Alignment explanation
Indices: 86773551--86773674 Score: 108
Period size: 29 Copynumber: 4.3 Consensus size: 28
86773541 TTTTACAAAA
* * *
86773551 TTTATATTTCTTTACATTTTGTATAATTT
1 TTTATATTTCTATAAAATTT-TATAATTT
* *
86773580 TCTTACGACTT-TATAAAATTTTATAATTTT
1 T-TTA-TATTTCTATAAAATTTTATAA-TTT
*
86773610 TTTATATTTCTAT-ATATTTTATAATTT
1 TTTATATTTCTATAAAATTTTATAATTT
* * *
86773637 TTTACGATTTTTATAAAATTTTACAATTT
1 TTTA-TATTTCTATAAAATTTTATAATTT
86773666 TTTATATTT
1 TTTATATTT
86773675 TTTATGATTT
Statistics
Matches: 76, Mismatches: 13, Indels: 13
0.75 0.13 0.13
Matches are distributed among these distances:
27 7 0.09
28 24 0.32
29 28 0.37
30 14 0.18
31 3 0.04
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTATATTTCTATAAAATTTTATAATTT
Found at i:86773640 original size:38 final size:36
Alignment explanation
Indices: 86773589--86773698 Score: 94
Period size: 38 Copynumber: 2.9 Consensus size: 36
86773579 TTCTTACGAC
** * * *
86773589 TTTATAAAATTTTATAATTTTTTTATATTTCTATATAT
1 TTTATAATTTTTTATGATTTTTTTAAATTT-TACA-AT
* *
86773627 TTTATAATTTTTTACGATTTTTATAAAATTTTACAAT
1 TTTATAATTTTTTATGATTTTT-TTAAATTTTACAAT
*
86773664 TTTTTATATTTTTTATGATTTTTTTCCAAATTTTA
1 TTTATA-ATTTTTTATGATTTTTTT--AAATTTTA
86773699 GTAATTTTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
37 8 0.14
38 36 0.62
39 14 0.24
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (36 bp):
TTTATAATTTTTTATGATTTTTTTAAATTTTACAAT
Found at i:86773650 original size:57 final size:58
Alignment explanation
Indices: 86773551--86773674 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 58
86773541 TTTTACAAAA
* *
86773551 TTTATATTTCTTTACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTATAATTTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAA-TTT
* *
86773610 TTTATATTTCTATATA-TTT-TATAATTTT-TTACGATTTTTATAAAATTTTACAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGA-CTTTATAAAATTTTACAATTT
86773666 TTTATATTT
1 TTTATATTT
86773675 TTTATGATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
56 18 0.30
57 25 0.42
58 3 0.05
59 14 0.23
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (58 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAATTT
Found at i:86773667 original size:29 final size:29
Alignment explanation
Indices: 86773572--86773669 Score: 112
Period size: 29 Copynumber: 3.4 Consensus size: 29
86773562 TTACATTTTG
*
86773572 TATAATTTTCTTACGA-CTTTATAAAATTT
1 TATAATTTT-TTACGATTTTTATAAAATTT
* * *
86773601 TATAATTTTTTTA-TATTTCTAT-ATATTT
1 TATAA-TTTTTTACGATTTTTATAAAATTT
86773629 TATAATTTTTTACGATTTTTATAAAATTT
1 TATAATTTTTTACGATTTTTATAAAATTT
*
86773658 TACAATTTTTTA
1 TATAATTTTTTA
86773670 TATTTTTTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
27 7 0.12
28 18 0.32
29 28 0.49
30 4 0.07
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (29 bp):
TATAATTTTTTACGATTTTTATAAAATTT
Found at i:86773675 original size:28 final size:28
Alignment explanation
Indices: 86773589--86773676 Score: 115
Period size: 28 Copynumber: 3.1 Consensus size: 28
86773579 TTCTTACGAC
86773589 TTTATAAAATTTTATAATTTTTTTATATT
1 TTTATAAAATTTTATAA-TTTTTTATATT
* * *
86773618 TCTAT-ATATTTTATAATTTTTTACGATT
1 TTTATAAAATTTTATAATTTTTTA-TATT
*
86773646 TTTATAAAATTTTACAATTTTTTATATT
1 TTTATAAAATTTTATAATTTTTTATATT
86773674 TTT
1 TTT
86773677 TATGATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 7 0.14
28 23 0.46
29 20 0.40
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (28 bp):
TTTATAAAATTTTATAATTTTTTATATT
Found at i:86773686 original size:28 final size:27
Alignment explanation
Indices: 86773551--86773686 Score: 85
Period size: 28 Copynumber: 4.7 Consensus size: 27
86773541 TTTTACAAAA
*
86773551 TTTATATTTCTTTACATTTTGTATAATTT
1 TTTATATTT-TTTATATTTT-TATAATTT
* * * * *
86773580 TCTTACGACTTTATAAAATTTTATAATTT
1 T-TTA-TATTTTTTATATTTTTATAATTT
*
86773609 TTT-TATATTTCTATATATTTTATAATTT
1 TTTATAT-TTTTTATAT-TTTTATAATTT
* * * *
86773637 TTTACGATTTTTATAAAATTTTACAATTT
1 TTTA-TATTTTT-TATATTTTTATAATTT
86773666 TTTATATTTTTTATGATTTTT
1 TTTATATTTTTTAT-ATTTTT
86773687 TTCCAAATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 17
0.70 0.16 0.15
Matches are distributed among these distances:
26 1 0.01
27 8 0.10
28 27 0.33
29 27 0.33
30 15 0.19
31 3 0.04
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTATATTTTTTATATTTTTATAATTT
Found at i:86773715 original size:19 final size:18
Alignment explanation
Indices: 86773597--86773715 Score: 78
Period size: 19 Copynumber: 6.2 Consensus size: 18
86773587 ACTTTATAAA
*
86773597 ATTTTATAATTTTTTTAT
1 ATTTTATAATTTTTTAAT
*
86773615 ATTTCTATATATTTTATAAT
1 ATTT-TATA-ATTTTTTAAT
* ** *
86773635 TTTTTACGATTTTTATAAA
1 ATTTTATAATTTTT-TAAT
*
86773654 ATTTTACAATTTTTTATAT
1 ATTTTATAATTTTTTA-AT
* *
86773673 TTTTTATGATTTTTTTCCAA-
1 ATTTTAT-AATTTTTT--AAT
86773693 ATTTTAGTAATTTTTTAAT
1 ATTTTA-TAATTTTTTAAT
86773712 ATTT
1 ATTT
86773716 GAATTTTTAT
Statistics
Matches: 77, Mismatches: 15, Indels: 17
0.71 0.14 0.16
Matches are distributed among these distances:
18 13 0.17
19 31 0.40
20 30 0.39
21 2 0.03
22 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTATAATTTTTTAAT
Found at i:86775193 original size:28 final size:27
Alignment explanation
Indices: 86775162--86775217 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
86775152 TTATTTAAAT
*
86775162 TATATTATTTTA-ATATTTAATAATTTTA
1 TATATT-TTTTATATA-TTAAAAATTTTA
*
86775190 TATATTTTTTATTTATTAAAAATTTTA
1 TATATTTTTTATATATTAAAAATTTTA
86775217 T
1 T
86775218 TTAGTCTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATTTTTTATATATTAAAAATTTTA
Found at i:86775425 original size:85 final size:85
Alignment explanation
Indices: 86775334--86775588 Score: 302
Period size: 88 Copynumber: 3.0 Consensus size: 85
86775324 TTTTTTTTTT
*
86775334 TTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAGGCCCTCAAATTTATTCA
1 TTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAGGCCCTCAAACTTATTCA
*
86775399 AAAAAAACAATTAAGGCCTCCTT
66 AAAAAAACAATTAA-GCC-CC-C
86775422 TTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAAGGCCCTCAAACTTATTC
1 TTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATC-AAAAGGCCCTCAAACTTATTC
*
86775487 AAAAAAAGCAATTAAGCCCCC
65 AAAAAAAACAATTAAGCCCCC
* * *** * ** **
86775508 -TTTTTTCCACTAAATTGGGTACTTGAAT-TTTCAAAATGCATCAAAAAACCCTCAAA-AAATTT
1 TTTTTTTGCACTCAATTGACCACTTG-ATCTTTAAAAATGCATCAAAAGGCCCTCAAACTTA-TT
*
86775570 C-AAAAAAGCAATTAAGCCC
64 CAAAAAAAACAATTAAGCCC
86775589 ATGCTTTTAT
Statistics
Matches: 151, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
83 19 0.13
84 15 0.10
85 33 0.22
86 2 0.01
87 2 0.01
88 46 0.30
89 34 0.23
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (85 bp):
TTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAGGCCCTCAAACTTATTCA
AAAAAAACAATTAAGCCCCC
Found at i:86775436 original size:88 final size:88
Alignment explanation
Indices: 86775332--86775513 Score: 321
Period size: 88 Copynumber: 2.1 Consensus size: 88
86775322 CTTTTTTTTT
*
86775332 TTTTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATC-AAAAGGCCCTCAAATTTAT
1 TTTTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAAGGCCCTCAAACTTAT
*
86775396 TCAAAAAAAACAATTAAGGCCTCC
66 TCAAAAAAAACAATTAA-GCCCCC
86775420 TTTTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAAGGCCCTCAAACTTAT
1 TTTTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAAGGCCCTCAAACTTAT
*
86775485 TCAAAAAAAGCAATTAAGCCCCC
66 TCAAAAAAAACAATTAAGCCCCC
86775508 TTTTTT
1 TTTTTT
86775514 CCACTAAATT
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
88 56 0.62
89 34 0.38
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (88 bp):
TTTTTTTTTGCACTCAATTGACCACTTGATCTTTAAAAATGCATCAAAAAGGCCCTCAAACTTAT
TCAAAAAAAACAATTAAGCCCCC
Found at i:86775626 original size:26 final size:25
Alignment explanation
Indices: 86775595--86775688 Score: 89
Period size: 26 Copynumber: 3.5 Consensus size: 25
86775585 GCCCATGCTT
86775595 TTATTAAAAATTTAAAAAATTTAAAA
1 TTATT-AAAATTTAAAAAATTTAAAA
* * *
86775621 ATATTAAATTTTAGAAAAAATATTAAATC
1 TTATTAAAATTT--AAAAAAT-TTAAA-A
* *
86775650 TTAATAAAAATTAAAAAATTTAGAAA
1 TTATTAAAATTTAAAAAATTTA-AAA
86775676 TTATTAAAATTTA
1 TTATTAAAATTTA
86775689 GAAATTTTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
25 6 0.11
26 18 0.34
27 16 0.30
28 5 0.09
29 8 0.15
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (25 bp):
TTATTAAAATTTAAAAAATTTAAAA
Found at i:86775638 original size:17 final size:17
Alignment explanation
Indices: 86775610--86775692 Score: 64
Period size: 19 Copynumber: 4.7 Consensus size: 17
86775600 AAAAATTTAA
86775610 AAAATTTA-AAAATATT
1 AAAATTTAGAAAATATT
*
86775626 AAATTTTAGAAAAAATATT
1 AAAATTTAG--AAAATATT
*
86775645 -AAATCTTA-ATAAAAATT
1 AAAAT-TTAGA-AAATATT
*
86775662 AAAAAATTTAGAAATTATT
1 --AAAATTTAGAAAATATT
86775681 AAAATTTAGAAA
1 AAAATTTAGAAA
86775693 TTTTTTATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 17
0.71 0.07 0.23
Matches are distributed among these distances:
16 8 0.15
17 18 0.34
18 3 0.06
19 19 0.36
20 5 0.09
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (17 bp):
AAAATTTAGAAAATATT
Found at i:86775658 original size:19 final size:20
Alignment explanation
Indices: 86775616--86775660 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
86775606 TTAAAAAATT
*
86775616 TAAAAATATTAAATTTTAGA
1 TAAAAATATTAAATCTTAGA
86775636 -AAAAATATTAAATCTTA-A
1 TAAAAATATTAAATCTTAGA
86775654 TAAAAAT
1 TAAAAAT
86775661 TAAAAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 22 0.96
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TAAAAATATTAAATCTTAGA
Found at i:86775993 original size:21 final size:21
Alignment explanation
Indices: 86775967--86776011 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
86775957 TAAATTTATA
* *
86775967 TTTCTTTAC-ATTTTGTATAAT
1 TTTC-TTACGATTTTATAAAAT
86775988 TTTCTTACGATTTTATAAAAT
1 TTTCTTACGATTTTATAAAAT
86776009 TTT
1 TTT
86776012 ATAATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTCTTACGATTTTATAAAAT
Found at i:86776074 original size:9 final size:9
Alignment explanation
Indices: 86776062--86776100 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
86776052 TTTTATAAAA
86776062 TTTTACATT
1 TTTTACATT
*
86776071 TTTTATATT
1 TTTTACATT
*
86776080 TTTTACAAT
1 TTTTACATT
*
86776089 TTTTATATT
1 TTTTACATT
86776098 TTT
1 TTT
86776101 CCAATTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTACATT
Found at i:86776074 original size:19 final size:19
Alignment explanation
Indices: 86775998--86776121 Score: 57
Period size: 18 Copynumber: 6.8 Consensus size: 19
86775988 TTTCTTACGA
*
86775998 TTTTATAAAATTTTATAAT
1 TTTTATAAAATTTTACAAT
* * *
86776017 TTTT-TTATATTTCTA-TAT
1 TTTTATAAAATTT-TACAAT
* *
86776035 ATTTTAT--ATTTTTACGA-
1 -TTTTATAAAATTTTACAAT
*
86776052 TTTTATAAAATTTTACATT
1 TTTTATAAAATTTTACAAT
**
86776071 TTTTAT-ATTTTTTACAAT
1 TTTTATAAAATTTTACAAT
* *
86776089 TTTTAT--ATTTTTCCAAT
1 TTTTATAAAATTTTACAAT
*
86776106 TTTTAATAAATTTTTA
1 TTTT-ATAAAATTTTA
86776122 ATATTTAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
16 6 0.08
17 15 0.19
18 36 0.45
19 16 0.20
20 7 0.09
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTATAAAATTTTACAAT
Found at i:86776107 original size:27 final size:25
Alignment explanation
Indices: 86776036--86776127 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 25
86776026 TTTCTATATA
* * *
86776036 TTTTATATTTTTACGATTTTATAAAA
1 TTTTATATTTTT-CAATTTTTTAAAT
* *
86776062 TTTTACATTTTTTATATTTTTTACAAT
1 TTTTATATTTTTCA-ATTTTTTA-AAT
86776089 TTTTATATTTTTCCAATTTTTAATAAAT
1 TTTTATATTTTT-CAATTTTT--TAAAT
86776117 TTTTAATATTT
1 TTTT-ATATTT
86776128 AAAATTTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
26 18 0.34
27 19 0.36
28 8 0.15
29 8 0.15
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (25 bp):
TTTTATATTTTTCAATTTTTTAAAT
Found at i:86776108 original size:26 final size:24
Alignment explanation
Indices: 86775997--86776111 Score: 68
Period size: 26 Copynumber: 4.3 Consensus size: 24
86775987 TTTTCTTACG
*
86775997 ATTTTATAAAATTTTATAATTTTTTTA
1 ATTTT-TAAAATTTTAT-A-TTTTTCA
* * *
86776024 TATTTCTATATATTTTATATTTTTACG
1 -ATTTTTA-AAATTTTATATTTTT-CA
* *
86776051 ATTTTATAAAATTTTACATTTTTTA
1 ATTTT-TAAAATTTTATATTTTTCA
*
86776076 TATTTTTTACAATTTTTATATTTTTCCA
1 -A-TTTTTA-AAATTTTATATTTTT-CA
86776104 ATTTTTAA
1 ATTTTTAA
86776112 TAAATTTTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
25 1 0.01
26 31 0.46
27 23 0.34
28 13 0.19
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (24 bp):
ATTTTTAAAATTTTATATTTTTCA
Found at i:86776110 original size:54 final size:54
Alignment explanation
Indices: 86775992--86776108 Score: 141
Period size: 53 Copynumber: 2.2 Consensus size: 54
86775982 TATAATTTTC
* *
86775992 TTACGATTTTATAAAATTTTATAATTTTTTTATATTTCTATATATTTTATATTT
1 TTACAATTTTATAAAATTTTATAATTTTTTTATATTTCTAAATATTTTATATTT
* * *
86776046 TTACGATTTTATAAAATTTTA-CA-TTTTTTATATTTTTTACAAT-TTTTATATTT
1 TTACAATTTTATAAAATTTTATAATTTTTTTATA-TTTCTA-AATATTTTATATTT
*
86776099 TTCCAATTTT
1 TTACAATTTT
86776109 TAATAAATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
52 9 0.16
53 24 0.43
54 23 0.41
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (54 bp):
TTACAATTTTATAAAATTTTATAATTTTTTTATATTTCTAAATATTTTATATTT
Found at i:86776128 original size:18 final size:17
Alignment explanation
Indices: 86776107--86776156 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
86776097 TTTTCCAATT
*
86776107 TTTAATAAATTTTTAATA
1 TTTAA-AAATTTTTAAAA
*
86776125 TTTAAAATTTTATTAAAA
1 TTTAAAAATTT-TTAAAA
*
86776143 TTTAAAAATATTTA
1 TTTAAAAATTTTTA
86776157 TAGCTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAAATTTTTAAAA
Found at i:86776301 original size:87 final size:89
Alignment explanation
Indices: 86776202--86776424 Score: 235
Period size: 87 Copynumber: 2.5 Consensus size: 89
86776192 CCTAATTTTT
* *
86776202 AAAAA-CAGGGGCTTAATTGATTTTTTTGAAAAAATTTGAGGGTCTTTTTGATGTATTTT-AAAG
1 AAAAAGCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTAAGGGTCTTTTT-ATGTATTTTGAAAG
* *
86776265 TTCAAATACCCAATTGAGTGCAAA-
65 TTCAAATACCCAAATGAGTGAAAAG
* * * * * * *
86776289 AATAA-TATGGGCTTAATT-ACTTTTTCTGAAAAGGTTTTAA-GGCCTTTTTATGTATTTTGAAT
1 AAAAAGCAGGGGCTTAATTGA-TTTTTTTGAAAAAG-TTTAAGGGTCTTTTTATGTATTTTGAAA
* *
86776351 GTTCAAGTATCCAAATGAGTGAAAAG
64 GTTCAAATACCCAAATGAGTGAAAAG
*
86776377 AAAAAGCAGGGGTTTAATTGA-TTTTTTGAAAAAGTTTAAGGGCTCTTT
1 AAAAAGCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTAAGGG-TCTTT
86776425 ACACCTTTAA
Statistics
Matches: 108, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
86 10 0.09
87 62 0.57
88 21 0.19
89 14 0.13
90 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (89 bp):
AAAAAGCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTAAGGGTCTTTTTATGTATTTTGAAAGT
TCAAATACCCAAATGAGTGAAAAG
Found at i:86777150 original size:9 final size:9
Alignment explanation
Indices: 86777127--86777163 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
86777117 TAGTTAAACG
*
86777127 AATCAAATT
1 AATCGAATT
*
86777136 ATTCGAATT
1 AATCGAATT
86777145 AATCGAATT
1 AATCGAATT
86777154 AATCGAATT
1 AATCGAATT
86777163 A
1 A
86777164 TTCAAGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (9 bp):
AATCGAATT
Found at i:86777153 original size:18 final size:18
Alignment explanation
Indices: 86777127--86777168 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
86777117 TAGTTAAACG
*
86777127 AATCAAATTATTCGAATT
1 AATCAAATTAATCGAATT
*
86777145 AATCGAATTAATCGAATT
1 AATCAAATTAATCGAATT
*
86777163 ATTCAA
1 AATCAA
86777169 GTCAAATCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (18 bp):
AATCAAATTAATCGAATT
Found at i:86777566 original size:19 final size:20
Alignment explanation
Indices: 86777528--86777567 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
86777518 ACTCCCTCAA
*
86777528 CCCCTAAACTTTTTATTTCT
1 CCCCTAAACTTTTTACTTCT
86777548 CCCCTAAAC-TTTTACTTCT
1 CCCCTAAACTTTTTACTTCT
86777567 C
1 C
86777568 ACTTTTACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45
Consensus pattern (20 bp):
CCCCTAAACTTTTTACTTCT
Found at i:86777703 original size:15 final size:15
Alignment explanation
Indices: 86777683--86777713 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86777673 TTTTGTACTA
86777683 TTTATATTATTTAAT
1 TTTATATTATTTAAT
86777698 TTTATATTATTTAAT
1 TTTATATTATTTAAT
86777713 T
1 T
86777714 GTTTAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTATATTATTTAAT
Found at i:86777708 original size:24 final size:23
Alignment explanation
Indices: 86777672--86777720 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
86777662 TAAATTTCAC
*
86777672 ATTTTGTACTATTTATATTATTTA
1 ATTTTATACTATTTA-ATTATTTA
* *
86777696 ATTTTATATTATTTAATTGTTTA
1 ATTTTATACTATTTAATTATTTA
86777719 AT
1 AT
86777721 CATATTGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
ATTTTATACTATTTAATTATTTA
Found at i:86782791 original size:16 final size:16
Alignment explanation
Indices: 86782770--86782801 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86782760 AATTGGGTTG
*
86782770 AGAAAATTATTTAATT
1 AGAAAATTAATTAATT
86782786 AGAAAATTAATTAATT
1 AGAAAATTAATTAATT
86782802 TAATAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
AGAAAATTAATTAATT
Found at i:86784282 original size:16 final size:16
Alignment explanation
Indices: 86784261--86784317 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 16
86784251 AAGCCCTCCC
86784261 CCAAAAAAAAACCTAA
1 CCAAAAAAAAACCTAA
86784277 CCAAAAAAAAA---AA
1 CCAAAAAAAAACCTAA
*
86784290 -AAAGAAAAAAACCTAA
1 CCAA-AAAAAAACCTAA
86784306 TCCAAAAAAAAA
1 -CCAAAAAAAAA
86784318 AGAAAAACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
12 2 0.06
13 9 0.27
16 13 0.39
17 7 0.21
18 2 0.06
ACGTcount: A:0.75, C:0.18, G:0.02, T:0.05
Consensus pattern (16 bp):
CCAAAAAAAAACCTAA
Found at i:86784290 original size:24 final size:24
Alignment explanation
Indices: 86784263--86784331 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 24
86784253 GCCCTCCCCC
86784263 AAAAAAAAACCTAACCAAAAAAAAAAAA
1 AAAAAAAAACCTAACC----AAAAAAAA
86784291 AAGAAAAAAACCTAATCC-AAAAAAA
1 AA-AAAAAAACCTAA-CCAAAAAAAA
*
86784316 AAAGAAAAACCTAACC
1 AAAAAAAAACCTAACC
86784332 CCCCAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
23 2 0.05
24 11 0.29
25 9 0.24
28 2 0.05
29 12 0.32
30 2 0.05
ACGTcount: A:0.74, C:0.17, G:0.03, T:0.06
Consensus pattern (24 bp):
AAAAAAAAACCTAACCAAAAAAAA
Found at i:86784302 original size:29 final size:31
Alignment explanation
Indices: 86784265--86784323 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 31
86784255 CCTCCCCCAA
86784265 AAAAAAACCTAA-CCAAAAAAAAAA-AAAAG
1 AAAAAAACCTAATCCAAAAAAAAAAGAAAAG
86784294 AAAAAAACCTAATCCAAAAAAAAAAGAAAA
1 AAAAAAACCTAATCCAAAAAAAAAAGAAAA
86784324 ACCTAACCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 12 0.43
30 12 0.43
31 4 0.14
ACGTcount: A:0.78, C:0.14, G:0.03, T:0.05
Consensus pattern (31 bp):
AAAAAAACCTAATCCAAAAAAAAAAGAAAAG
Found at i:86784331 original size:29 final size:27
Alignment explanation
Indices: 86784263--86784323 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 27
86784253 GCCCTCCCCC
86784263 AAAA-AAAAACCTAACCAAAAAAAAAA
1 AAAAGAAAAACCTAACCAAAAAAAAAA
86784289 AAAAGAAAAAAACCTAATCCAAAAAAAAAA
1 AAAAG--AAAAACCTAA-CCAAAAAAAAAA
86784319 GAAAA
1 -AAAA
86784324 ACCTAACCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.13
29 10 0.33
30 12 0.40
31 4 0.13
ACGTcount: A:0.79, C:0.13, G:0.03, T:0.05
Consensus pattern (27 bp):
AAAAGAAAAACCTAACCAAAAAAAAAA
Found at i:86784344 original size:26 final size:25
Alignment explanation
Indices: 86784283--86784332 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
86784273 CTAACCAAAA
*
86784283 AAAAAAAAAAGAAAAAAACCTAATCC
1 AAAAAAAAAAG-AAAAAACCTAACCC
86784309 AAAAAAAAAAG-AAAAACCTAACCC
1 AAAAAAAAAAGAAAAAACCTAACCC
86784333 CCCAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.52
26 11 0.48
ACGTcount: A:0.72, C:0.18, G:0.04, T:0.06
Consensus pattern (25 bp):
AAAAAAAAAAGAAAAAACCTAACCC
Found at i:86784380 original size:30 final size:30
Alignment explanation
Indices: 86784345--86784501 Score: 260
Period size: 30 Copynumber: 5.2 Consensus size: 30
86784335 CAAAAAAAAA
86784345 ACCACCAACTCCACTAGCCACACCTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86784375 ACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
86784405 ACCACCAACTCCACTAGCCACACCTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86784435 ACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86784465 ACCACCAACTCCACTAGCCATACCTTCTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
86784495 ACCACCA
1 ACCACCA
86784502 CTTGTACCTA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 117 1.00
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACCACCAACTCCACTAGCCACACCTTTTCC
Found at i:86784436 original size:60 final size:60
Alignment explanation
Indices: 86784345--86784501 Score: 296
Period size: 60 Copynumber: 2.6 Consensus size: 60
86784335 CAAAAAAAAA
86784345 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
86784405 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
* *
86784465 ACCACCAACTCCACTAGCCATACCTTCTCCACCACCA
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
86784502 CTTGTACCTA
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 95 1.00
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (60 bp):
ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
Found at i:86785089 original size:10 final size:9
Alignment explanation
Indices: 86785070--86785131 Score: 60
Period size: 8 Copynumber: 7.1 Consensus size: 9
86785060 ATTACGTATA
86785070 TATATATTT
1 TATATATTT
86785079 TATACTATTT
1 TATA-TATTT
86785089 TATATATCTT
1 TATATAT-TT
*
86785099 TA-ATATTA
1 TATATATTT
86785107 TAT-TA-TT
1 TATATATTT
*
86785114 TATATA-TA
1 TATATATTT
86785122 TATATATTT
1 TATATATTT
86785131 T
1 T
86785132 TTTTTTACAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
7 4 0.09
8 14 0.32
9 13 0.30
10 13 0.30
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (9 bp):
TATATATTT
Found at i:86785093 original size:21 final size:20
Alignment explanation
Indices: 86785068--86785131 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
86785058 ATATTACGTA
86785068 TATATATATTTTATACTATTT
1 TATATATATTTTATA-TATTT
* * *
86785089 TATATATCTTTAATATTATAT
1 TATATATATTTTATA-TATTT
* *
86785110 TATTTATATATATATATATTT
1 TATATATAT-TTTATATATTT
86785131 T
1 T
86785132 TTTTTTACAT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 29 0.88
22 4 0.12
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TATATATATTTTATATATTT
Found at i:86785124 original size:48 final size:44
Alignment explanation
Indices: 86784991--86785122 Score: 119
Period size: 48 Copynumber: 2.9 Consensus size: 44
86784981 CCTTTTTTGT
* *
86784991 TATTGTTATATTTC-TTAATATTATATTATATATAT-TCTTTTAA
1 TATT-TTATATATCTTTAATATTATATTATATATATATATTTTAA
*
86785034 TATATTAGGTATAT-TTTAA-ATTCTATATTACGTATATATATATTTTATA
1 TATTTTA--TATATCTTTAATA-T-TATATTA--TATATATATATTTTA-A
*
86785083 CTATTTTATATATCTTTAATATTATATTATTTATATATAT
1 -TATTTTATATATCTTTAATATTATATTATATATATATAT
86785123 ATATATTTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 21
0.73 0.05 0.21
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 9 0.12
45 7 0.10
46 10 0.14
47 7 0.10
48 18 0.25
49 7 0.10
50 7 0.10
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (44 bp):
TATTTTATATATCTTTAATATTATATTATATATATATATTTTAA
Found at i:86785176 original size:22 final size:24
Alignment explanation
Indices: 86785148--86785206 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
86785138 ACATGTTATC
86785148 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
86785170 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
86785195 TTATGTACATAT
1 TTATGTATATAT
86785207 TTTTAATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:86785196 original size:25 final size:25
Alignment explanation
Indices: 86785164--86785212 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
86785154 ATATATCTTA
**
86785164 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
86785189 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
86785213 TAGTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:86785402 original size:7 final size:8
Alignment explanation
Indices: 86785367--86785418 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
86785357 TAATTATTAT
*
86785367 TATTCTAA
1 TATTTTAA
*
86785375 TATTTTGA
1 TATTTTAA
86785383 TATTTTAA
1 TATTTTAA
86785391 TATTTT-A
1 TATTTTAA
86785398 TATTTTATA
1 TATTTTA-A
*
86785407 TATTTTAT
1 TATTTTAA
86785415 TATT
1 TATT
86785419 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:86785409 original size:16 final size:15
Alignment explanation
Indices: 86785367--86785414 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
86785357 TAATTATTAT
*
86785367 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
86785383 TATTTTAATATTTTA
1 TATTTTAATATTTTA
86785398 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
86785414 T
1 T
86785415 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:86786956 original size:12 final size:12
Alignment explanation
Indices: 86786939--86786974 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
86786929 ATTCATTTGA
*
86786939 CATTCATGCATT
1 CATTCATACATT
86786951 CATTCATACATT
1 CATTCATACATT
86786963 CATTCATACATT
1 CATTCATACATT
86786975 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.42
Consensus pattern (12 bp):
CATTCATACATT
Found at i:86792209 original size:71 final size:69
Alignment explanation
Indices: 86792110--86792284 Score: 199
Period size: 71 Copynumber: 2.5 Consensus size: 69
86792100 TTTTCAAGGG
* *
86792110 AAATAAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATAAACTCATATTGCGAGAAGA-GAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
86792174 GTTTT
65 GTTTT
* * ** * *
86792179 CAAAATCAACTCATATTGTGAGAAGAGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATAAACTCATATTGCGAGAAGAGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
86792244 TGTTTT
64 TGTTTT
** * * *
86792250 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATAAACTCATATTGCGAGAAGAGAGTTGAGCCT
86792285 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 29 0.33
71 57 0.64
72 3 0.03
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATAAACTCATATTGCGAGAAGAGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:86792454 original size:126 final size:124
Alignment explanation
Indices: 86792163--86792504 Score: 444
Period size: 126 Copynumber: 2.8 Consensus size: 124
86792153 GTTGAGGTAT
* * * *
86792163 TTTTAATTTT--TGTTTTCAAAATCAACTCATATTGTGAGAAGAGAGTTGAGCCTCGGGGCACGC
1 TTTTAATTTTACT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACGC
* * * * *
86792226 TGAGGTATTTT-TA-GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
65 TGAGGTATTTTCAATTTTTGTGTTTTAATTTAACTCATATTGCGAGAGGTGAGTTAAGCC
** *
86792284 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCCACGCT
1 TTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACGCT
*
86792349 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGGGTTGAA-CC
66 GAGGTATTTTCAATTTTTGTGTTTTAATTT-AACTCATATTGCGAGAGGTGAGTT-AAGCC
* * *
86792409 TTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTAATTT-TACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACGC
* *
86792474 TGAGGTATTTTCAATTTCTGT-TTTCAATTTA
65 TGAGGTATTTTCAATTTTTGTGTTTTAATTTA
86792505 CGTTGTTCAA
Statistics
Matches: 195, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
121 10 0.05
122 57 0.29
123 2 0.01
124 14 0.07
125 41 0.21
126 71 0.36
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (124 bp):
TTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACGCT
GAGGTATTTTCAATTTTTGTGTTTTAATTTAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:86792576 original size:86 final size:85
Alignment explanation
Indices: 86792425--86792581 Score: 253
Period size: 86 Copynumber: 1.8 Consensus size: 85
86792415 TTTCTACTTT
* *
86792425 TTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATT
1 TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
86792490 TCTGTTTTCAATTTACGTTG
66 TATGTTTTCAATTTACGTTG
*
86792510 TTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AA
1 TTCAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAA
86792574 TTTATGTT
64 TTTATGTT
86792582 CATAAAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
85 5 0.08
86 57 0.86
87 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (85 bp):
TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
TATGTTTTCAATTTACGTTG
Found at i:86792618 original size:73 final size:73
Alignment explanation
Indices: 86792495--86792842 Score: 463
Period size: 73 Copynumber: 4.8 Consensus size: 73
86792485 CAATTTCTGT
* *
86792495 TTTCAATTTAC-G-TTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTT-CTGTTTG-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
**
86792558 GCTGAGGTGG
64 GCTGAGGTAA
* * ** * * * * **
86792568 TTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGC-TCACA
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAAGACA
*
86792632 CGCTGAGGTAT
63 CGCTGAGGTAA
*
86792643 TTTCAATTTCTGTTT-T-TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
86792706 TGAGGTAA
66 TGAGGTAA
86792714 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
86792779 TGAGGTAA
66 TGAGGTAA
*
86792787 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
86792843 GGCTCACATG
Statistics
Matches: 242, Mismatches: 25, Indels: 16
0.86 0.09 0.06
Matches are distributed among these distances:
70 1 0.00
71 28 0.12
72 2 0.01
73 183 0.76
74 3 0.01
75 24 0.10
76 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (73 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTAA
Found at i:86792880 original size:14 final size:14
Alignment explanation
Indices: 86792861--86792903 Score: 86
Period size: 14 Copynumber: 3.1 Consensus size: 14
86792851 TGCTGAGGTC
86792861 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86792875 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86792889 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86792903 T
1 T
86792904 CGTAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86793083 original size:73 final size:73
Alignment explanation
Indices: 86792911--86793366 Score: 326
Period size: 73 Copynumber: 5.9 Consensus size: 73
86792901 GTTCGTAAAA
* * * *
86792911 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
*
86792976 CTGTTTTTC
65 CTGTTTGTC
86792985 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
86793050 TGTTTGTC
66 TGTTTGTC
* * * * *
86793058 AAAAATTAACTTATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGG-----T-AATT
*
86793123 TCTATTCTTCAAT-TTCTGTTC
58 TC-AAT-TTC--TGTT-TG-TC
* ** * * * * * * *
86793144 GTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
1 -AAAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCGGGACACGCTGAGGTA-A
* *
86793206 TTTAAATTTCTGTTTTTC
56 TTTCAATTTCTGTTTGTC
* * *
86793224 AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
86793289 TCTGTTTGTC
64 TCTGTTTGTC
** * * * **
86793299 AAAAATTTACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAATT
86793364 TCT
64 TCT
86793367 ATTCTTCAAT
Statistics
Matches: 299, Mismatches: 52, Indels: 61
0.73 0.13 0.15
Matches are distributed among these distances:
73 88 0.29
74 52 0.17
75 47 0.16
76 18 0.06
80 3 0.01
81 25 0.08
82 7 0.02
83 7 0.02
84 9 0.03
85 8 0.03
86 5 0.02
87 15 0.05
90 10 0.03
92 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTC
Found at i:86793276 original size:76 final size:75
Alignment explanation
Indices: 86793133--86793338 Score: 272
Period size: 76 Copynumber: 2.7 Consensus size: 75
86793123 TCTATTCTTC
* * * *
86793133 AATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTTTGT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACT
*
86793198 GAGGTATTTTTA
65 GAGGTA-ATTTA
* * *
86793210 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCGGGACACACTG
1 AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTG
*
86793275 AGGTAATTTC
66 AGGTAATTTA
** *
86793285 AATTTCTGTTTGTC--AAAAATTTACTCATATTGCGAGAGGTGAGTTAAGCCTCGG
1 AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
86793339 CTCACATGCT
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
73 35 0.31
75 16 0.14
76 52 0.46
77 11 0.10
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (75 bp):
AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTG
AGGTAATTTA
Found at i:86793330 original size:241 final size:239
Alignment explanation
Indices: 86792875--86793772 Score: 1550
Period size: 241 Copynumber: 3.7 Consensus size: 239
86792865 CAATTTCTGT
* * *
86792875 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAG
1 TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
86792940 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
66 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCA
* *
86793005 AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTT
131 AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
86793070 ATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
196 ATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
86793114 TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
1 TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
86793179 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTG
66 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTG
* *
86793244 CAAAAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTTAC
129 CAAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAAC
86793309 TCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
194 TCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
86793355 TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 TTTTCAATTTCTATTCTTCAATTTCTGTTCGT-AAAAAAAAATCAACTCATATTGCGAGAGGTGA
86793420 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTG
65 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTG
* *
86793485 CGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAAC
129 CAAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAAC
*
86793550 TCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
194 TCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
* *
86793596 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
1 TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
86793661 TTTAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTG-TTTTCAAAATTCAACTCATATTGCG
66 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGC-
* ** *
86793725 AGAAA--TGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
130 A-AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGT
86793773 ATTTTTAAAT
Statistics
Matches: 632, Mismatches: 22, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
238 57 0.09
239 112 0.18
240 74 0.12
241 311 0.49
242 78 0.12
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (239 bp):
TTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCA
AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
ATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTC
Found at i:86793351 original size:75 final size:73
Alignment explanation
Indices: 86793125--86793616 Score: 334
Period size: 73 Copynumber: 6.3 Consensus size: 73
86793115 TTTCAATTTC
* *
86793125 TATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TATT-TTCAATTTCTGTTTGT--CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
86793190 G-ACACGCTGAGG
62 GCACA-GCTGAGG
* * * *
86793202 TATTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCGGG
1 TA-TTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
86793267 ACACA-CTGAGG
63 -CACAGCTGAGG
* ** *
86793278 TAATTTCAATTTCTGTTTGTC-AAAAATTTACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTC
1 TATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--C
86793342 ACATGCTGAGG
64 ACA-GCTGAGG
* * * ** * * * *
86793353 TCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAAATCA-ACT-C-ATATTGCGAGA
1 TATTTTCAA----T-TTC-T---GTT-TG-TC-AAAAAATCAACTCATATTGCGAGA--G-GTGA
*
86793415 GGTGAGTTGAGCCTCAGG-ACACGCTGAGG
51 GTTGAG-----CCTC-GGCACA-GCTGAGG
* * * *
86793444 TATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGA
1 TA-TTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCA
86793509 CACGCTGAGG
65 CA-GCTGAGG
*
86793519 TAATTTCAATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
1 TATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--C
86793583 ACATGCTGAGG
64 ACA-GCTGAGG
* *
86793594 TCTTTTCAATTTCTGTTTTTCAA
1 TATTTTCAATTTCTGTTTGTCAA
86793617 TTTCTGTTCG
Statistics
Matches: 328, Mismatches: 50, Indels: 75
0.72 0.11 0.17
Matches are distributed among these distances:
72 2 0.01
73 76 0.23
74 18 0.05
75 74 0.23
76 48 0.15
77 15 0.05
78 5 0.02
79 1 0.00
80 21 0.06
81 6 0.02
82 2 0.01
83 4 0.01
84 2 0.01
85 4 0.01
86 4 0.01
87 6 0.02
88 17 0.05
91 11 0.03
92 6 0.02
93 4 0.01
94 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCAC
AGCTGAGG
Found at i:86793396 original size:166 final size:166
Alignment explanation
Indices: 86793224--86793532 Score: 451
Period size: 166 Copynumber: 1.9 Consensus size: 166
86793214 TCTGTTTTTC
* *
86793224 AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCGGGACACACTGAGGTA-ATTTCAAT
1 AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAGGACACACTGAGGTATATTTAAAT
** * *
86793288 TTCTGTTTGTC-AAAAATTTACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAG
66 TTCTGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGG--CACACGCTGAG
**
86793352 GTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAA
129 GTAATTTCAATTTCTATTCTTCAATTTCTGTTCGTAAA
* * * *
86793390 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAAT
1 AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAGGACACACTGAGGTATATTTAAAT
* * *
86793455 TTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
66 TTCTGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGCACACGCTGAGGT
86793520 AATTTCAATTTCT
131 AATTTCAATTTCT
86793533 GTTTGTCAAA
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
166 74 0.59
167 16 0.13
168 36 0.29
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (166 bp):
AAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAGGACACACTGAGGTATATTTAAAT
TTCTGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGCACACGCTGAGGT
AATTTCAATTTCTATTCTTCAATTTCTGTTCGTAAA
Found at i:86793572 original size:73 final size:73
Alignment explanation
Indices: 86793392--86793616 Score: 342
Period size: 75 Copynumber: 3.0 Consensus size: 73
86793382 TTCGTAAAAA
* *
86793392 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
86793457 CTGTTTTTC
65 CTGTTTTTC
* *
86793466 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
*
86793531 CTGTTTGTC
65 CTGTTTTTC
* * *
86793540 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
86793605 TCTGTTTTTC
64 TCTGTTTTTC
86793615 AA
1 AA
86793617 TTTCTGTTCG
Statistics
Matches: 137, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
73 39 0.28
74 16 0.12
75 82 0.60
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:86793602 original size:482 final size:482
Alignment explanation
Indices: 86792428--86793772 Score: 1857
Period size: 482 Copynumber: 2.8 Consensus size: 482
86792418 CTACTTTTTC
* * *
86792428 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-TTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
*
86792492 TG-TTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
66 TGTTTTTC-A---A--------AA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
** * * ** * * *
86792556 ACGCTGAGGTGGTTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGC
118 ACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGC
* * **
86792621 CTTGGCTCACACGCTGAGG-------------TATTTTCAATTTCTGTT--T---TTAAAATCAA
183 CTCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTTTCAATTTCTGTTCGTAAAAAAAAATCAA
* * * *
86792668 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTC
248 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* *
86792732 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
313 AAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
86792797 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCGGCTCACATGCTGAGGTCT
378 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCT
86792862 TTTCAATTTCTGTTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAA
443 TTTCAATTTC-----TT-AATTTC----TTTCAATTTCTGTTCGTAAAAA
*
86792912 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
86792977 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
* *
86793041 TTCAATTTCTGTTTGTCAAAAATTAACTTATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATG
131 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
86793106 CTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGA
196 CTGAGGTCTTTTCAATTTCTATT-TTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGA
86793171 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAAATCAAC
260 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC--AAAAATCAAC
** *
86793236 TCATATTGCAAAAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTCTGTTTGTCAA
323 TCATATTGCAAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAA
**
86793301 AAATTTACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTC
388 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTC
86793366 -T-A-TTC-TTCAATTTCTGTTCGTAAAAAA
453 TTAATTTCTTTCAATTTCTGTTCGT-AAAAA
86793393 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
*
86793458 TGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
*
86793523 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
131 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
*
86793588 CTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGA
196 CTGAGGTCTTTTCAATTTCT-ATTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGA
* *
86793653 GAGGTGAGTTTAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTG-TTTTCAAAATTCAACTC
260 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTC
* *
86793717 ATATTGCGAGAAA--TGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
325 ATATTGC-A-AAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
86793773 ATTTTTAAAT
Statistics
Matches: 786, Mismatches: 46, Indels: 63
0.88 0.05 0.07
Matches are distributed among these distances:
472 110 0.14
473 2 0.00
479 56 0.07
480 17 0.02
481 86 0.11
482 224 0.28
483 2 0.00
484 50 0.06
485 19 0.02
486 19 0.02
488 2 0.00
491 52 0.07
492 16 0.02
494 131 0.17
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (482 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
CTGAGGTCTTTTCAATTTCTATTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCA
TATTGCAAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAA
TCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTTA
ATTTCTTTCAATTTCTGTTCGTAAAAA
Found at i:86793615 original size:14 final size:14
Alignment explanation
Indices: 86793596--86793624 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86793586 TGCTGAGGTC
86793596 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86793610 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86793624 T
1 T
86793625 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Done.