Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 301 of 444
Found at i:86793783 original size:73 final size:73
Alignment explanation
Indices: 86793632--86793772 Score: 194
Period size: 73 Copynumber: 1.9 Consensus size: 73
86793622 GTTCGTAAAA
* ** * * * *
86793632 AAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCTGAGGTATATTTAAATTT
86793697 CTGTTTTC
66 CTGTTTTC
* *
86793705 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTA-ATTTCAATTT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCTGAGGTATATTTAAATTT
86793769 CTGT
66 CTGT
86793773 ATTTTTAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
72 12 0.20
73 47 0.80
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (73 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGCTGAGGTATATTTAAATTT
CTGTTTTC
Found at i:86793784 original size:88 final size:88
Alignment explanation
Indices: 86793683--86793860 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
86793673 ACACGCTGAG
86793683 GTATTTTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
1 GTATTTTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
86793748 ACGTTGAGGTAATTTCAATTTCT
66 ACGTTGAGGTAATTTCAATTTCT
86793771 GTATTTTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
1 GTATTTTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
86793836 ACGTTGAGGTAATTTCAATTTCT
66 ACGTTGAGGTAATTTCAATTTCT
86793859 GT
1 GT
86793861 TCAAAATGAG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (88 bp):
GTATTTTTAAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGAC
ACGTTGAGGTAATTTCAATTTCT
Found at i:86793872 original size:49 final size:49
Alignment explanation
Indices: 86793815--86793910 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
86793805 ATATTGCGAG
86793815 AAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
*
86793864 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
86793911 TTTTTCCAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAACCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
Found at i:86794009 original size:14 final size:14
Alignment explanation
Indices: 86793990--86794016 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86793980 CGCCGAGGTA
86793990 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
86794004 TTTTCAATTTCTG
1 TTTTCAATTTCTG
86794017 CCTTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:86794030 original size:94 final size:91
Alignment explanation
Indices: 86793868--86794102 Score: 287
Period size: 92 Copynumber: 2.6 Consensus size: 91
86793858 TGTTCAAAAT
* * *
86793868 GAGTTGAGCCTCAAG--ACACGTTGAGGTAATTTCAATTTCTGTTTTTTTCCAATTTCTGCTTTT
1 GAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCTG--TTTTT-CAATTTCTGCTTTT
* * *
86793931 CAAAAAAATCAACTCGTATTGTGAGAGGC
63 AAAAAAAATCAACTCATATTGCGAGAGGC
*
86793960 GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTTTAA
1 GAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTG-CTTTTAA
*
86794025 AAAAAATCAACTCATATTGCGAGAGGT
65 AAAAAATCAACTCATATTGCGAGAGGC
* * * * *
86794052 GAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTATCTTTCAA
1 GAGTTGAGCCTCAGG-TCACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
86794103 AAAATCAACT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
91 11 0.09
92 91 0.73
94 23 0.18
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (91 bp):
GAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTTTTAAA
AAAAATCAACTCATATTGCGAGAGGC
Found at i:86794132 original size:76 final size:77
Alignment explanation
Indices: 86794004--86794415 Score: 413
Period size: 76 Copynumber: 5.2 Consensus size: 77
86793994 CAATTTCTGT
** * * *
86794004 TTTTCAATTTCTGCCTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTATC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATC
* * *
86794069 ACGCGCTGAGCTA
65 ACACACTGAGGTA
86794082 TTTTCAATTTCTATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGATC
86794145 ACACACTGAGGTA
65 ACACACTGAGGTA
*
86794158 TTTTCAGTTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGATC
86794222 ACACACTGAGGTA
65 ACACACTGAGGTA
* * * *
86794235 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 --TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TAGA
*
86794299 TCACATA-TCGAGGTA
63 TCACACACT-GAGGTA
**
86794314 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *** *
86794378 AGCCTTGGCTCACGTGCTGAGCTA
54 AGCCTTAGATCACACACTGAGGTA
86794402 TTTTCAATTTCTAT
1 TTTTCAATTTCTAT
86794416 TTTTAATGTC
Statistics
Matches: 288, Mismatches: 25, Indels: 44
0.81 0.07 0.12
Matches are distributed among these distances:
75 3 0.01
76 68 0.24
77 65 0.23
78 14 0.05
79 65 0.23
80 8 0.03
85 3 0.01
86 2 0.01
87 1 0.00
88 52 0.18
89 7 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
CACACTGAGGTA
Found at i:86794212 original size:77 final size:77
Alignment explanation
Indices: 86794004--86794320 Score: 426
Period size: 77 Copynumber: 4.1 Consensus size: 77
86793994 CAATTTCTGT
** * * *
86794004 TTTTCAATTTCTGCCTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCT
1 TTTTCAATTTCTATC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGAT
* * *
86794068 CACGCGCTGAGCTA
64 CACACACTGAGGTA
86794082 TTTTCAATTTCTATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
86794146 CACACTGAGGTA
66 CACACTGAGGTA
*
86794158 TTTTCAGTTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
86794223 CACACTGAGGTA
66 CACACTGAGGTA
* * * *
86794235 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 --TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTCAGA
*
86794299 TCACATA-TCGAGGTA
63 TCACACACT-GAGGTA
86794314 TTTTCAA
1 TTTTCAA
86794321 AATCTGCTTT
Statistics
Matches: 218, Mismatches: 15, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
75 3 0.01
76 66 0.30
77 67 0.31
78 14 0.06
79 62 0.28
80 6 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
CACACTGAGGTA
Found at i:86796347 original size:39 final size:40
Alignment explanation
Indices: 86796169--86796351 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
86796159 CCGCACCAAG
* * * * * * * *
86796169 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
86796209 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
86796249 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
86796289 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
86796328 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
86796352 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:86804268 original size:40 final size:40
Alignment explanation
Indices: 86804194--86804339 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
86804184 CCGCACCAAG
* * * * * *
86804194 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
86804234 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
86804274 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
86804314 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
86804340 TTTACAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:86804354 original size:40 final size:40
Alignment explanation
Indices: 86804226--86804377 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
86804216 ATCACGATTT
* * * * *
86804226 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
86804266 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* **
86804306 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTAC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-AGCTACTA
* * *
86804346 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
86804378 CATTCAATTT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 90 0.92
41 6 0.06
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:86806507 original size:25 final size:24
Alignment explanation
Indices: 86806436--86806512 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
86806426 CCCTCCCCCC
86806436 AAAA-AAAAACCTAA--CCAAAAA
1 AAAAGAAAAACCTAACCCCAAAAA
**
86806457 AAAAGAAAAAAACCTAATCCAAAAAAA
1 AAAAG--AAAAACCTAA-CCCCAAAAA
86806484 AAAAGAAAAACCTAACCCCCAAAAA
1 AAAAGAAAAACCTAA-CCCCAAAAA
86806509 AAAA
1 AAAA
86806513 CCACCAACTC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
21 4 0.09
24 10 0.22
25 21 0.47
27 10 0.22
ACGTcount: A:0.73, C:0.19, G:0.03, T:0.05
Consensus pattern (24 bp):
AAAAGAAAAACCTAACCCCAAAAA
Found at i:86806512 original size:27 final size:23
Alignment explanation
Indices: 86806436--86806500 Score: 103
Period size: 25 Copynumber: 2.7 Consensus size: 23
86806426 CCCTCCCCCC
86806436 AAAAAAAAACCTAACCAAAAAAA
1 AAAAAAAAACCTAACCAAAAAAA
86806459 AAGAAAAAAACCTAATCCAAAAAAA
1 AA-AAAAAAACCTAA-CCAAAAAAA
86806484 AAAAGAAAAACCTAACC
1 AAAA-AAAAACCTAACC
86806501 CCCAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
23 2 0.05
24 16 0.41
25 21 0.54
ACGTcount: A:0.72, C:0.18, G:0.03, T:0.06
Consensus pattern (23 bp):
AAAAAAAAACCTAACCAAAAAAA
Found at i:86806547 original size:30 final size:30
Alignment explanation
Indices: 86806512--86806667 Score: 251
Period size: 30 Copynumber: 5.2 Consensus size: 30
86806502 CCAAAAAAAA
86806512 ACCACCAACTCCACTAGCCACACCTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86806542 ACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
86806572 ACC-CCAACTCCACTAGCCACACCTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86806601 ACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
* *
86806631 ACCACCAACTCCACTAGCCATACCTTCTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCC
86806661 ACCACCA
1 ACCACCA
86806668 CTTGTACCTA
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
29 27 0.23
30 88 0.77
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACCACCAACTCCACTAGCCACACCTTTTCC
Found at i:86806608 original size:59 final size:60
Alignment explanation
Indices: 86806512--86806667 Score: 287
Period size: 59 Copynumber: 2.6 Consensus size: 60
86806502 CCAAAAAAAA
86806512 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
86806572 ACC-CCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
* *
86806631 ACCACCAACTCCACTAGCCATACCTTCTCCACCACCA
1 ACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
86806668 CTTGTACCTA
Statistics
Matches: 93, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
59 59 0.63
60 34 0.37
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (60 bp):
ACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCC
Found at i:86807256 original size:10 final size:9
Alignment explanation
Indices: 86807237--86807304 Score: 59
Period size: 10 Copynumber: 7.1 Consensus size: 9
86807227 ATTACGTATA
86807237 TATATATTT
1 TATATATTT
86807246 TATACTATTT
1 TATA-TATTT
86807256 TATATATCTT
1 TATATAT-TT
*
86807266 TA-ATATTA
1 TATATATTT
86807274 TAT-TATTT
1 TATATATTT
86807282 ATATATATATAT
1 -TATATAT-T-T
86807294 ATATATATTT
1 -TATATATTT
86807304 T
1 T
86807305 TTTTTTTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
8 7 0.14
9 15 0.30
10 17 0.34
11 2 0.04
12 9 0.18
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (9 bp):
TATATATTT
Found at i:86807260 original size:21 final size:21
Alignment explanation
Indices: 86807235--86807301 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
86807225 ATATTACGTA
* *
86807235 TATATATATTTTATACTATTT
1 TATATATATTTAATACTATAT
* *
86807256 TATATATCTTTAATATTATAT
1 TATATATATTTAATACTATAT
* *
86807277 TATTTATATAT-ATA-TATA-
1 TATATATATTTAATACTATAT
86807295 TATATAT
1 TATATAT
86807302 TTTTTTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 6 0.16
19 4 0.11
20 3 0.08
21 25 0.66
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATATATTTAATACTATAT
Found at i:86807276 original size:16 final size:17
Alignment explanation
Indices: 86807235--86807301 Score: 59
Period size: 16 Copynumber: 3.9 Consensus size: 17
86807225 ATATTACGTA
86807235 TATATATATTTTATACTAT
1 TATATATA-TTTATA-TAT
*
86807254 TTTATATATCTT-TAATAT
1 TATATATAT-TTAT-ATAT
86807272 TATAT-TATTTATATA-
1 TATATATATTTATATAT
*
86807287 TATATATATATATAT
1 TATATATATTTATAT
86807302 TTTTTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
15 5 0.12
16 13 0.32
17 4 0.10
18 9 0.22
19 10 0.24
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATATATTTATATAT
Found at i:86807276 original size:48 final size:45
Alignment explanation
Indices: 86807158--86807304 Score: 124
Period size: 48 Copynumber: 3.1 Consensus size: 45
86807148 CCTTTTTTGT
* *
86807158 TATTGTTATATTTC-TTAATATTATATTATATATAT-TCTTTTA-A
1 TATT-TTATATATCTTTAATATTATATTATATATATATATTTTATA
*
86807201 TATATTAGGTATAT-TTTAA-ATTCTATATTACGTATATATATATTTTATA
1 TATTTTA--TATATCTTTAATA-T-TATATTA--TATATATATATTTTATA
*
86807250 CTATTTTATATATCTTTAATATTATATTATTTATATATATATATATATA
1 -TATTTTATATATCTTTAATATTATATTA--TATATATATAT-TTTATA
86807299 TATTTT
1 TATTTT
86807305 TTTTTTTTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
42 3 0.04
43 4 0.05
44 9 0.11
45 7 0.08
47 7 0.08
48 35 0.42
49 12 0.14
50 7 0.08
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (45 bp):
TATTTTATATATCTTTAATATTATATTATATATATATATTTTATA
Found at i:86807353 original size:22 final size:24
Alignment explanation
Indices: 86807325--86807383 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
86807315 ACATGTTATC
86807325 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
86807347 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
86807372 TTATGTACATAT
1 TTATGTATATAT
86807384 TTTTAATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:86807373 original size:25 final size:25
Alignment explanation
Indices: 86807341--86807389 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
86807331 ATATATCTTA
**
86807341 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
86807366 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
86807390 TAGTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:86807570 original size:16 final size:15
Alignment explanation
Indices: 86807546--86807593 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
86807536 TAATTATTAT
*
86807546 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
86807562 TATTTTAATATTTTA
1 TATTTTAATATTTTA
86807577 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
86807593 T
1 T
86807594 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:86807581 original size:7 final size:8
Alignment explanation
Indices: 86807546--86807597 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
86807536 TAATTATTAT
*
86807546 TATTCTAA
1 TATTTTAA
*
86807554 TATTTTGA
1 TATTTTAA
86807562 TATTTTAA
1 TATTTTAA
86807570 TATTTT-A
1 TATTTTAA
86807577 TATTTTATA
1 TATTTTA-A
*
86807586 TATTTTAT
1 TATTTTAA
86807594 TATT
1 TATT
86807598 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:86809069 original size:15 final size:15
Alignment explanation
Indices: 86809051--86809152 Score: 51
Period size: 15 Copynumber: 7.1 Consensus size: 15
86809041 ATTACTATTA
86809051 TTATTATATTTCTAT
1 TTATTATATTTCTAT
* *
86809066 TTATATTTATTT-T-C
1 TTAT-TATATTTCTAT
* * *
86809080 TTATTCTAATGCTA-
1 TTATTATATTTCTAT
86809094 TTATTAT-TTATCTAAT
1 TTATTATATT-TCT-AT
*
86809110 TT-TGAT-TTATCTAT
1 TTATTATATT-TCTAT
86809124 TTA-T--ATTTCTAT
1 TTATTATATTTCTAT
86809136 TTATTATATTTCTAT
1 TTATTATATTTCTAT
86809151 TT
1 TT
86809153 CTATTTATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 22
0.67 0.10 0.22
Matches are distributed among these distances:
12 8 0.12
13 8 0.12
14 17 0.26
15 25 0.38
16 8 0.12
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATTATATTTCTAT
Found at i:86809302 original size:3 final size:3
Alignment explanation
Indices: 86809294--86809342 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
86809284 TTTTTTACTA
* * * * *
86809294 TAT TAT TAT TAA TAT TAT GAC CAT TAT TAT TAT TAC TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
86809342 T
1 T
86809343 CAATTAAGTA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:86809342 original size:15 final size:15
Alignment explanation
Indices: 86809294--86809342 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
86809284 TTTTTTACTA
* *
86809294 TATTATTATTAATAT
1 TATTACTATTATTAT
* *
86809309 TATGACCATTATTAT
1 TATTACTATTATTAT
86809324 TATTACTATTATTAT
1 TATTACTATTATTAT
86809339 TATT
1 TATT
86809343 CAATTAAGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTACTATTATTAT
Found at i:86812753 original size:30 final size:29
Alignment explanation
Indices: 86812660--86812763 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 29
86812650 TAATCGATCA
* *
86812660 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* *
86812689 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGCT
*
86812718 CGCACACTTAGTGCCATACT-TTTTCAAGCT
1 CGCACACTTAGTGCCATA-TAATTT-AAGCT
86812748 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86812764 ACCTTGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
29 45 0.68
30 21 0.32
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTAAGCT
Found at i:86824031 original size:44 final size:44
Alignment explanation
Indices: 86823870--86824853 Score: 469
Period size: 45 Copynumber: 21.8 Consensus size: 44
86823860 TCATTATGGA
* **
86823870 AAATCTCATCTCCCT-AAGGTTGCA-TGGAGCAGATTGAAGCCACG
1 AAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGATA-G
* * * * *
86823914 -AATCTTATCTCGCTGAAGTTGTAGTGGAGTAGA-TCAATCATAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GATAG
* * * * * *
86823957 AAAACCTTATCTCTCT-AAGTCGCAGAGGAGCAGGTTGAAGTTAG
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * *
86824001 AAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAGACTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---GA-AGA-TAG
* * *
86824050 AAATCTCATCTCCCT-AAGGTTGCA-TGGAGCAAATTGAAGCTACG
1 AAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGATA-G
* * * * *
86824094 -AATCTCATCTCCCTGAAGTTGCAGTTGAGTAGATTGAAGTTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * **
86824137 AGATCTTATCTCCCTGAAGTTGCAATGGAGTAGATCGATCATAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * * *
86824181 AAAACCTTATCTTCCTGAAGTCGCAGTGGAGTAGGTTAAAGATACC
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-G
* * * *
86824227 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-G
* * * *
86824272 CTACAAATCTCATCTCCCTGAAGTTGCA-TAGAGCAGATTGAAGCTAC
1 ----AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * **
86824319 AACTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGATCATAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * *
86824363 AAAATCTTATCTCTCTAAAGTTACAGTGGAGCAGGTTGAAGTTAT
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * **
86824408 AAGTCTTATCCCCCTGAAGTTGCAATGAAGCAGGCTGAAGATAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* ** * * * * *
86824452 CAAATCATATCTCTTTGAAATTGTAGTGGAGTAGATTAAAGCCGTAG
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATAG
* * *
86824499 --ATCTTATCTCCCTGAAG-TGCCATTGGAGCAAACTGAAGATAG
1 AAATCTTATCTCCCTGAAGTTG-CAGTGGAGCAGATTGAAGATAG
* * * * * *
86824541 CGAATCTTATTTCCCTGAAGTTGCAGTGGAACATATT-AAAACTAC
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAG
* * * *
86824586 AAATTACAAATCTAATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCT-G
1 AAA-T-C---T-T-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* ** * * *
86824636 CAGATCTTATCTCCCCAAAGTTGCAGTGGAGTAGATCGAGGATAG
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * * **
86824681 TAAATCTTATCTCTCTGAAGTTACAGTAGAGCAAATTAAAGCTCT
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
86824726 AAA-CATTATCTCTCT-TA--T--AGTGGAGCAGGTAGAAGATAG
1 AAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * *
86824765 CAAATCTTATTTCCCTGAGGTTACAGTGGAACAGATTAAAGCTATCAAAG
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT---AG
86824815 CATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 ---AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
86824854 AAAGTGGCAA
Statistics
Matches: 689, Mismatches: 192, Indels: 110
0.70 0.19 0.11
Matches are distributed among these distances:
39 13 0.02
40 11 0.02
41 2 0.00
42 3 0.00
43 83 0.12
44 212 0.31
45 217 0.31
46 4 0.01
47 7 0.01
48 29 0.04
49 43 0.06
50 4 0.01
51 27 0.04
52 34 0.05
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
Found at i:86824098 original size:92 final size:90
Alignment explanation
Indices: 86823868--86824132 Score: 286
Period size: 92 Copynumber: 2.9 Consensus size: 90
86823858 AGTCATTATG
* *
86823868 GAAAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCCACGAATCTTATCTCGCTGAAGT
1 GAAAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGT
* * * *
86823933 TGTAGTGGAGTAGA-TCAA-TCATA
66 TGCAGTGGAGTAGATTGAAGACAGA
* * * * * * *
86823956 GAAAACCTTATCTCTCTAA-GTCGCAGAGGAGCAGGTTGAAGTTA-GAAATCTTATCTCCCTGAA
1 GAAAATCTCATCTCCCTAAGGTTGCA-TGGAGCAGATTGAAGCTACG-AATCTTATCTCCCTGAA
* * *
86824019 GTAGCAGTGGAGCATATTGAAGACAGA
64 GTTGCAGTGGAGTAGATTGAAGACAGA
* * *
86824046 CTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCTACGAATCTCATCTCCCTGAA
1 -GA-AAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAA
*
86824111 GTTGCAGTTGAGTAGATTGAAG
64 GTTGCAGTGGAGTAGATTGAAG
86824133 TTATAGATCT
Statistics
Matches: 139, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
87 6 0.04
88 58 0.42
89 3 0.02
90 3 0.02
91 1 0.01
92 62 0.45
93 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (90 bp):
GAAAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGT
TGCAGTGGAGTAGATTGAAGACAGA
Found at i:86824148 original size:92 final size:91
Alignment explanation
Indices: 86823870--86824671 Score: 280
Period size: 89 Copynumber: 8.9 Consensus size: 91
86823860 TCATTATGGA
* *
86823870 AAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCCACGAATCTTATCTCGCTGAAGTTG
1 AAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGTTG
* *
86823935 TAGTGGAGTAGA-TCAA-TCATAGA--
66 CAGTGGAGTAGATTGAAGT-ATAGATC
* * * * * * *
86823958 AAACCTTATCTCTCTAA-GTCGCAGAGGAGCAGGTTGAAGTTA-GAAATCTTATCTCCCTGAAGT
1 AAATCTCATCTCCCTAAGGTTGCA-TGGAGCAGATTGAAGCTACG-AATCTTATCTCCCTGAAGT
* * * *
86824021 AGCAGTGGAGCATATTGAAG-ACAGACTAC
64 TGCAGTGGAGTAGATTGAAGTATAGA-T-C
* *
86824050 AAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCTACGAATCTCATCTCCCTGAAGTTG
1 AAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGTTG
*
86824115 CAGTTGAGTAGATTGAAGTTATAGATC
66 CAGTGGAGTAGATTGAAG-TATAGATC
* * * * *
86824142 ---T-T-ATCTCCCTGAA-GTTGCAATGGAGTAGATCG-ATCATA-GAAAACCTTATCTTCCTGA
1 AAATCTCATCTCCCT-AAGGTTGC-ATGGAGCAGATTGAAGC-TACG--AATCTTATCTCCCTGA
* * * *
86824199 AGTCGCAGTGGAGTAGGTTAAAG-AT--ACC
61 AGTTGCAGTGGAGTAGATTGAAGTATAGATC
* ** * * *
86824227 AAATCTTATCT-CCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGGCTACAAATCTCATCTCCCT
1 AAATCTCATCTCCCTAAG-GTTGCA-TGGAGCAGATT---GA-A-GCTACGAATCTTATCTCCCT
* * *
86824291 GAAGTTGCA-TAGAGCAGATTGAAG-CT--A-C
59 GAAGTTGCAGTGGAGTAGATTGAAGTATAGATC
* * * * * * *
86824319 AACTCTTATCTCCCTGAA-GTTGCAGTGGAGTAGATCG-ATCATA-GAAAATCTTATCTCTCTAA
1 AAATCTCATCTCCCT-AAGGTTGCA-TGGAGCAGATTGAAGC-TACG--AATCTTATCTCCCTGA
* * *
86824381 AGTTACAGTGGAGCAGGTTGAAGT-T--AT-
61 AGTTGCAGTGGAGTAGATTGAAGTATAGATC
* * * * ** * * * ** *
86824408 AAGTCTTATCCCCCTGAA-GTTGCAATGAAGCAGGCTGAAGATAGCAAATCATATCTCTTTGAAA
1 AAATCTCATCTCCCT-AAGGTTGC-ATGGAGCAGATTGAAGCTA-CGAATCTTATCTCCCTGAAG
* * **
86824472 TTGTAGTGGAGTAGATTAAAGCCGTAGATC
63 TTGCAGTGGAGTAGATTGAAG-TATAGATC
* * * *
86824502 ---T-T-ATCTCCCTGAA-G-TGCCATTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTGAA
1 AAATCTCATCTCCCT-AAGGTTG-CA-TGGAGCAGATTGAAGCTA-CGAATCTTATCTCCCTGAA
** * * * * *
86824560 GTTGCAGTGGAACATATTAAAACTACAAATTAC
62 GTTGCAGTGGAGTAGATT-GAAGTATAGA-T-C
* * * * * **
86824593 AAATCTAATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTGC-AGATCTTATCTCCCCAAAGT
1 AAATCTCATCTCCCTAAGGTTGCA-TGGAGCAGATTGAAGCTACGA-ATCTTATCTCCCTGAAGT
86824657 TGCAGTGGAGTAGAT
64 TGCAGTGGAGTAGAT
86824672 CGAGGATAGT
Statistics
Matches: 529, Mismatches: 123, Indels: 117
0.69 0.16 0.15
Matches are distributed among these distances:
85 2 0.00
86 1 0.00
87 27 0.05
88 98 0.19
89 174 0.33
90 24 0.05
91 3 0.01
92 89 0.17
93 26 0.05
94 25 0.05
95 34 0.06
96 24 0.05
97 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (91 bp):
AAATCTCATCTCCCTAAGGTTGCATGGAGCAGATTGAAGCTACGAATCTTATCTCCCTGAAGTTG
CAGTGGAGTAGATTGAAGTATAGATC
Found at i:86824317 original size:226 final size:223
Alignment explanation
Indices: 86823871--86824353 Score: 634
Period size: 226 Copynumber: 2.2 Consensus size: 223
86823861 CATTATGGAA
* * *
86823871 AATCTCATCTCCCT-AAGGTTGCA-TGGAGCAGATTGAAGCCACGAATCTTATCTCGCTGAAGTT
1 AATCTCATCTCCCTGAA-GTTGCAGTGGAGTAGATTGAAGCCAAGAATCTTATCTCCCTGAAGTT
* * * *
86823934 GTAGTGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGCAGAGGAGCAGGTTGAAGTT
65 GCAATGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGCAGAGGAGCAGGTTAAAGAT
* *
86823999 AGAAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAGACTACAAATCTCATCTCCC
130 ACAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCC
*
86824064 TAAGGTTGCATGGAGCAAATTGAAGCTAC
195 TAAGGTTGCATAGAGCAAATTGAAGCTAC
* **
86824093 GAATCTCATCTCCCTGAAGTTGCAGTTGAGTAGATTGAAGTTATAG-ATCTTATCTCCCTGAAGT
1 -AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCA-AGAATCTTATCTCCCTGAAGT
* * *
86824157 TGCAATGGAGTAGATCGATCATAGAAAACCTTATCT-TCCTGAAGTCGCAGTGGAGTAGGTTAAA
64 TGCAATGGAGTAGATCAATCATAGAAAACCTTATCTCT-CT-AAGTCGCAGAGGAGCAGGTTAAA
* * * * * * *
86824221 GATACCAAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGGCTACAAATCTCATC
127 GATA-CAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATC
*
86824286 TCCCTGAA-GTTGCATAGAGCAGATTGAAGCTAC
191 TCCCT-AAGGTTGCATAGAGCAAATTGAAGCTAC
*
86824319 AACTCTTATCTCCCTGAAGTTGCAGTGGAGTAGAT
1 AA-TCTCATCTCCCTGAAGTTGCAGTGGAGTAGAT
86824354 CGATCATAGA
Statistics
Matches: 226, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
223 21 0.09
224 68 0.30
225 26 0.12
226 109 0.48
227 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (223 bp):
AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCAAGAATCTTATCTCCCTGAAGTTG
CAATGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGCAGAGGAGCAGGTTAAAGATA
CAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCCT
AAGGTTGCATAGAGCAAATTGAAGCTAC
Found at i:86824426 original size:226 final size:225
Alignment explanation
Indices: 86823871--86824488 Score: 590
Period size: 226 Copynumber: 2.7 Consensus size: 225
86823861 CATTATGGAA
* * * * * *
86823871 AATCTCATCTCCCT-AAGGTTGCA-TGGAGCAGATTGAAGCCA-CGAATCTTATCTCGCTGAAGT
1 AATCTCATCTCCCTGAA-GTTGCAGTGGAGTAGATCGAAGTCATAG-ATCTTATCTCCCTAAAGT
** * * * * *
86823933 TGTAGTGGAGTAGATC-AATCATAGAAAACCTTATCTCTCT-AAGTCGCAGAGGAGCAGGTTGAA
64 TACAATGGAGCAGATCGAA-CATAGAAAACCTTATCCCCCTGAAGTCGCAGTGGAGCAGGTTGAA
* * * * * *
86823996 GTTAGAAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAGACTACAAATCTCATCT
128 GATACAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCT
*
86824061 CCCTAAGGTTGCATGGAGCAAATTGAAGCTACG
193 CCCTAAGGTTGCATAGAGCAAATTGAAGCTACG
* * * * *
86824094 AATCTCATCTCCCTGAAGTTGCAGTTGAGTAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTG
1 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGTCATAGATCTTATCTCCCTAAAGTTA
* * ** * *
86824159 CAATGGAGTAGATCGATCATAGAAAACCTTATCTTCCTGAAGTCGCAGTGGAGTAGGTTAAAGAT
66 CAATGGAGCAGATCGAACATAGAAAACCTTATCCCCCTGAAGTCGCAGTGGAGCAGGTTGAAGAT
* * * *
86824224 ACCAAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGGCTACAAATCTCATCTCC
131 A-CAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCC
*
86824289 CTGAA-GTTGCATAGAGCAGATTGAAGCTAC-
195 CT-AAGGTTGCATAGAGCAAATTGAAGCTACG
* *
86824319 AACTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCG-A-TCATAGAAAATCTTATCTCTCTAAA
1 AA-TCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGTCATAG---ATCTTATCTCCCTAAA
* * * ** * ** * * * *
86824382 GTTACAGTGGAGCAGGTTGAAGTTA-TAAGTCTTATCCCCCTGAAGTTGCAATGAAGCAGGCTGA
62 GTTACAATGGAGCAGATCGAACATAGAAAACCTTATCCCCCTGAAGTCGCAGTGGAGCAGGTTGA
* * * *
86824446 AGATAGCAAATCATATCTCTTTGAAATTGTAGTGGAGTAGATT
127 AGATA-CAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATT
86824489 AAAGCCGTAG
Statistics
Matches: 327, Mismatches: 57, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
223 20 0.06
224 71 0.22
225 28 0.09
226 175 0.54
227 33 0.10
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (225 bp):
AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGTCATAGATCTTATCTCCCTAAAGTTA
CAATGGAGCAGATCGAACATAGAAAACCTTATCCCCCTGAAGTCGCAGTGGAGCAGGTTGAAGAT
ACAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCC
TAAGGTTGCATAGAGCAAATTGAAGCTACG
Found at i:86824646 original size:229 final size:225
Alignment explanation
Indices: 86824364--86824857 Score: 498
Period size: 229 Copynumber: 2.2 Consensus size: 225
86824354 CGATCATAGA
* * * * * *
86824364 AAATCTTATCTCTCTAAAGTTACAGTGGAGCAGGTTGAAGTTATAAGTCTTATC-CCCCTGAAGT
1 AAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTCTTATCTCCCC-AAAGT
* * ** * * *
86824428 TGCAATGAAGCAG-GCTGAAGATAGCAAATCATATCTCTTTGAAATTGTAGTGGAGTAGATTAAA
65 TGCAATGAAGCAGATC-GAAGATAGCAAATCATATCTCTCTGAAATTACAGTAGAGCAAATTAAA
* * *
86824492 GC-CGTAGATC-TTATCTCCCTGAAGTGCCATTGGAGCAAACT-GAAGATAGCGAATCTTATTTC
129 GCTC-TA-AACATTATCTCCCT-AA-T---AGTGGAGC-AACTAGAAGATAGCAAATCTTATTTC
* * **
86824554 CCTGAAGTTGCAGTGGAACATATTAAAACTA-CAAATTAC
186 CCTGAAGTTACAGTGGAACAGATTAAAACTATCAAAGCAC
* *
86824593 AAATCTAATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTGC-AGATCTTATCTCCCCAAAGT
1 AAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAG-TCTTATCTCCCCAAAGT
* * * * * * *
86824657 TGCAGTGGAGTAGATCGAGGATAGTAAATCTTATCTCTCTGAAGTTACAGTAGAGCAAATTAAAG
65 TGCAATGAAGCAGATCGAAGATAGCAAATCATATCTCTCTGAAATTACAGTAGAGCAAATTAAAG
* * ** *
86824722 CTCTAAACATTATCTCTCTTATAGTGGAGCAGGTAGAAGATAGCAAATCTTATTTCCCTGAGGTT
130 CTCTAAACATTATCTCCCTAATAGTGGAGCAACTAGAAGATAGCAAATCTTATTTCCCTGAAGTT
* *
86824787 ACAGTGGAACAGATTAAAGCTATCAAAGCAT
195 ACAGTGGAACAGATTAAAACTATCAAAGCAC
* *
86824818 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
1 AAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAG
86824858 TGGCAATACC
Statistics
Matches: 219, Mismatches: 39, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
223 2 0.01
224 54 0.25
225 42 0.19
227 1 0.00
228 5 0.02
229 109 0.50
230 6 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (225 bp):
AAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTCTTATCTCCCCAAAGTT
GCAATGAAGCAGATCGAAGATAGCAAATCATATCTCTCTGAAATTACAGTAGAGCAAATTAAAGC
TCTAAACATTATCTCCCTAATAGTGGAGCAACTAGAAGATAGCAAATCTTATTTCCCTGAAGTTA
CAGTGGAACAGATTAAAACTATCAAAGCAC
Found at i:86825471 original size:21 final size:21
Alignment explanation
Indices: 86825447--86825496 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
86825437 ATTCAATAAA
86825447 AAACAATAAAAAAGAGATCAT
1 AAACAATAAAAAAGAGATCAT
86825468 AAACAATAAAAAAGAGATCAT
1 AAACAATAAAAAAGAGATCAT
86825489 AAA-AATAA
1 AAACAATAA
86825497 GTAATAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.70, C:0.08, G:0.08, T:0.14
Consensus pattern (21 bp):
AAACAATAAAAAAGAGATCAT
Found at i:86827418 original size:30 final size:30
Alignment explanation
Indices: 86827384--86827441 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86827374 CTGGGCACTT
* * *
86827384 CCACACGGGCTGGGCACACTCCCATGTGAG
1 CCACACGAGCTGGCCACACGCCCATGTGAG
86827414 CCACACGAGCTGGCCACACGCCCATGTG
1 CCACACGAGCTGGCCACACGCCCATGTG
86827442 CCAGCCTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACGAGCTGGCCACACGCCCATGTGAG
Found at i:86831124 original size:25 final size:25
Alignment explanation
Indices: 86831068--86831127 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
86831058 AGGGCTACTG
*
86831068 ATTCTAGCTCTTATGAGCTTACCGAT
1 ATTC-AGCTCGTATGAGCTTACCGAT
* *
86831094 ACTCAGCTCGTATGATCTTACC-ATT
1 ATTCAGCTCGTATGAGCTTACCGA-T
86831119 ATTCAGCTC
1 ATTCAGCTC
86831128 AGAGGAGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 1 0.03
25 25 0.86
26 3 0.10
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (25 bp):
ATTCAGCTCGTATGAGCTTACCGAT
Found at i:86832455 original size:38 final size:38
Alignment explanation
Indices: 86832404--86832500 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 38
86832394 ACTATCTCCG
* * *
86832404 TCCAACCCAACACACCATGTGGGGATAAAATCGACCCA
1 TCCAACCCTACACACCATATGGGGATAAAATCAACCCA
* *
86832442 -CTCATCCCTACACACAAAATATGGGGATAAAATCAACCCA
1 TC-CAACCCTACACAC--CATATGGGGATAAAATCAACCCA
*
86832482 TCCAACCTTACACACCATA
1 TCCAACCCTACACACCATA
86832501 GAGTACCGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
37 1 0.02
38 14 0.30
40 31 0.66
41 1 0.02
ACGTcount: A:0.39, C:0.34, G:0.10, T:0.16
Consensus pattern (38 bp):
TCCAACCCTACACACCATATGGGGATAAAATCAACCCA
Found at i:86833508 original size:29 final size:29
Alignment explanation
Indices: 86833476--86833536 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
86833466 AAAGGAAGAG
*
86833476 AAAGCCAAAATTTTAAAAGTGGGAAAAAT
1 AAAGCCAAAATTTTAAAAGCGGGAAAAAT
*
86833505 AAAGCCAAAATTTTGAAAGCGGGAAAAAT
1 AAAGCCAAAATTTTAAAAGCGGGAAAAAT
86833534 AAA
1 AAA
86833537 AATAAAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.56, C:0.08, G:0.18, T:0.18
Consensus pattern (29 bp):
AAAGCCAAAATTTTAAAAGCGGGAAAAAT
Found at i:86833543 original size:29 final size:29
Alignment explanation
Indices: 86833481--86833544 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
86833471 AAGAGAAAGC
* **
86833481 CAAAATTTTAAAAGTGGGAAAAATAAAGC
1 CAAAATTTTAAAAGCGGGAAAAATAAAAA
*
86833510 CAAAATTTTGAAAGCGGGAAAAATAAAAA
1 CAAAATTTTAAAAGCGGGAAAAATAAAAA
*
86833539 TAAAAT
1 CAAAAT
86833545 ACCGATAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.58, C:0.06, G:0.16, T:0.20
Consensus pattern (29 bp):
CAAAATTTTAAAAGCGGGAAAAATAAAAA
Found at i:86838824 original size:19 final size:19
Alignment explanation
Indices: 86838782--86838834 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
86838772 TTTTAGAAAA
*
86838782 TTTTAAAATCTTTAAGTTT
1 TTTTAAATTCTTTAAGTTT
*
86838801 ATTTAAATTCTTT-AGATTT
1 TTTTAAATTCTTTAAG-TTT
86838820 TTTTATAATT-TTTAA
1 TTTTA-AATTCTTTAA
86838835 AAATATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.07
19 21 0.75
20 5 0.18
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTAAATTCTTTAAGTTT
Found at i:86840826 original size:22 final size:24
Alignment explanation
Indices: 86840781--86840826 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
86840771 CTCAATTTTT
* *
86840781 TAAATAAAAAATATTTTTTGAAAA
1 TAAATAAAAAATATTTCTTCAAAA
86840805 TAAA-AAAAAA-ATTTCTTCAAAA
1 TAAATAAAAAATATTTCTTCAAAA
86840827 ACCATCACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 6 0.30
24 4 0.20
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
TAAATAAAAAATATTTCTTCAAAA
Found at i:86844418 original size:40 final size:40
Alignment explanation
Indices: 86844343--86844435 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
86844333 CTATGTTTGG
* * * *
86844343 CACTTAGTGTACGTTTCGAGATAGCTTCGGCTATATATAA
1 CACTTAGTGTGCGTATCGAGATAACTTCAGCTATATATAA
* *
86844383 CACTTAGTGTGCGTATCG-GAATAACTTCAGTTATATATGA
1 CACTTAGTGTGCGTATCGAG-ATAACTTCAGCTATATATAA
86844423 CACTTAGTGTGCG
1 CACTTAGTGTGCG
86844436 AGACCAAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.98
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (40 bp):
CACTTAGTGTGCGTATCGAGATAACTTCAGCTATATATAA
Found at i:86847884 original size:17 final size:18
Alignment explanation
Indices: 86847864--86847897 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
86847854 AATTTAGCCA
86847864 TTTTTATTTTA-TTTTAC
1 TTTTTATTTTAGTTTTAC
86847881 TTTTTATTTTAGTTTTA
1 TTTTTATTTTAGTTTTA
86847898 GTTTAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTAGTTTTAC
Found at i:86849062 original size:3 final size:3
Alignment explanation
Indices: 86849054--86849170 Score: 62
Period size: 3 Copynumber: 40.0 Consensus size: 3
86849044 AACGAAAATG
* * * * *
86849054 ATA ATA ATA ATA ATA GTA AT- ATAA ATA ATG ATA ATA GTG GTA A-A
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
86849098 AT- ATG ATA ATA CTA ATG ATA ATA ATA ATA GTC AT- ATA AGA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
86849144 ATA TTA GTA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
86849171 CAAATAATGC
Statistics
Matches: 84, Mismatches: 25, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
2 8 0.10
3 74 0.88
4 2 0.02
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:86849517 original size:23 final size:24
Alignment explanation
Indices: 86849463--86849520 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
86849453 TTAATAATAT
86849463 TACATAAATATATATTAAAAATAAA
1 TACAT-AATATATATTAAAAATAAA
* * **
86849488 TATATAATA-ATATTAAAAGTATG
1 TACATAATATATATTAAAAATAAA
86849511 TACATAATAT
1 TACATAATAT
86849521 GTACATGATA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 19 0.70
24 4 0.15
25 4 0.15
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (24 bp):
TACATAATATATATTAAAAATAAA
Found at i:86849550 original size:19 final size:19
Alignment explanation
Indices: 86849522--86849594 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
86849512 ACATAATATG
*
86849522 TACATGATATATAAAAATA
1 TACATAATATATAAAAATA
86849541 TACATAATATATTAAAACATA
1 TACATAATATA-TAAAA-ATA
* * *
86849562 GACATAATATA-CAATATA
1 TACATAATATATAAAAATA
*
86849580 TATATATATATATAA
1 TACATA-ATATATAA
86849595 CATTCGAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
18 7 0.16
19 17 0.40
20 6 0.14
21 13 0.30
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (19 bp):
TACATAATATATAAAAATA
Found at i:86849552 original size:21 final size:21
Alignment explanation
Indices: 86849523--86849572 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
86849513 CATAATATGT
* *
86849523 ACATGATATA-TAAAA-ATAT
1 ACATAATATATTAAAACATAG
86849542 ACATAATATATTAAAACATAG
1 ACATAATATATTAAAACATAG
86849563 ACATAATATA
1 ACATAATATA
86849573 CAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 9 0.33
20 5 0.19
21 13 0.48
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.30
Consensus pattern (21 bp):
ACATAATATATTAAAACATAG
Found at i:86852778 original size:60 final size:60
Alignment explanation
Indices: 86852651--86852792 Score: 153
Period size: 60 Copynumber: 2.4 Consensus size: 60
86852641 ATCAGAGTTA
* * * * *
86852651 ATTGGGCCTTAGCCCATATCAATATTAATCTGGGTCATAGCCCCTTACAATATTAGAGTAT
1 ATTGGGCC-TAGCCCATATTAATATCAATATGGGTCATAGCCCATTACAATATGAGAGTAT
* * *
86852712 ACTGGGCCTAGCCCATATTAGTATCAATATGGGTCGTAGCCCTATTACAAGT-TGAGA-TAT
1 ATTGGGCCTAGCCCATATTAATATCAATATGGGTCATAGCCC-ATTACAA-TATGAGAGTAT
**
86852772 ATTGGGCCTTTCCCATATTAA
1 ATTGGGCCTAGCCCATATTAA
86852793 CACTGTTGGG
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
60 49 0.73
61 17 0.25
62 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (60 bp):
ATTGGGCCTAGCCCATATTAATATCAATATGGGTCATAGCCCATTACAATATGAGAGTAT
Found at i:86857613 original size:12 final size:12
Alignment explanation
Indices: 86857598--86857731 Score: 59
Period size: 12 Copynumber: 11.2 Consensus size: 12
86857588 ATTTTCCCTA
86857598 TTATTATTTTAT
1 TTATTATTTTAT
86857610 TTATTATTTTA-
1 TTATTATTTTAT
86857621 TTATT-TTATTAT
1 TTATTATT-TTAT
* *
86857633 TT-TTCTTTTCT
1 TTATTATTTTAT
*
86857644 TTA--AATTTAT
1 TTATTATTTTAT
*
86857654 TTGTT-TATTTAT
1 TTATTAT-TTTAT
*
86857666 TTATTTATCTTAT
1 TTA-TTATTTTAT
* *
86857679 TT-TCCTACTTAATT
1 TTAT--TATTTTA-T
86857693 TTATTATTTT-T
1 TTATTATTTTAT
*
86857704 ATAGTTATTATTAT
1 TTA-TTATT-TTAT
*
86857718 TTGTTATTTTAT
1 TTATTATTTTAT
86857730 TT
1 TT
86857732 TCCGTCTTAT
Statistics
Matches: 90, Mismatches: 16, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
10 8 0.09
11 19 0.21
12 33 0.37
13 23 0.26
14 6 0.07
15 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (12 bp):
TTATTATTTTAT
Found at i:86857620 original size:8 final size:8
Alignment explanation
Indices: 86857596--86857635 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
86857586 CTATTTTCCC
86857596 TATTATTAT
1 TATTATT-T
86857605 T-TTA-TT
1 TATTATTT
86857611 TATTATTT
1 TATTATTT
86857619 TATTATTT
1 TATTATTT
86857627 TATTATTT
1 TATTATTT
86857635 T
1 T
86857636 TCTTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.07
7 4 0.14
8 22 0.76
9 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TATTATTT
Found at i:86857971 original size:16 final size:15
Alignment explanation
Indices: 86857940--86857975 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
86857930 TTCCACTTTG
*
86857940 TTTCTTATTTTTATT
1 TTTCTTATTATTATT
86857955 TTTCTTCATTATTATT
1 TTTCTT-ATTATTATT
86857971 TTTCT
1 TTTCT
86857976 CACTTCTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTCTTATTATTATT
Found at i:86859455 original size:20 final size:20
Alignment explanation
Indices: 86859432--86859487 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
86859422 TGAGTTTATT
86859432 TGTTTTATTTTTAGTTTTT-A
1 TGTTTTATTTTTA-TTTTTGA
* *
86859452 TGTTTT-TGTTTATTTTTGT
1 TGTTTTATTTTTATTTTTGA
*
86859471 TGTTTCATTTTTATTTT
1 TGTTTTATTTTTATTTT
86859488 CTTAGACTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 5 0.17
19 10 0.33
20 15 0.50
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.77
Consensus pattern (20 bp):
TGTTTTATTTTTATTTTTGA
Found at i:86866543 original size:14 final size:14
Alignment explanation
Indices: 86866521--86866565 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
86866511 TAGTGGGAAT
*
86866521 CCCCTTTGTGCAAG
1 CCCCCTTGTGCAAG
86866535 CCCCCTTGTGCAAG
1 CCCCCTTGTGCAAG
* *
86866549 CCCTC-TGTGCAAA
1 CCCCCTTGTGCAAG
86866562 CCCC
1 CCCC
86866566 TTAGTGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.16, C:0.44, G:0.18, T:0.22
Consensus pattern (14 bp):
CCCCCTTGTGCAAG
Found at i:86866812 original size:36 final size:36
Alignment explanation
Indices: 86866758--86866833 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
86866748 CGAACCTAAA
86866758 CTATATATTTCATACAAACCCTAAGAATATGCGAGC
1 CTATATATTTCATACAAACCCTAAGAATATGCGAGC
* * *
86866794 CTATATATGTT-ATGCAAACCCTAGGAATATGTGAGC
1 CTATATAT-TTCATACAAACCCTAAGAATATGCGAGC
86866830 CTAT
1 CTAT
86866834 GCGTTATGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (36 bp):
CTATATATTTCATACAAACCCTAAGAATATGCGAGC
Found at i:86868738 original size:13 final size:12
Alignment explanation
Indices: 86868700--86868738 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
86868690 AAAATTTAAG
*
86868700 ATTTAATTTATA
1 ATTTAATTTATT
86868712 ACTTTAATTTATT
1 A-TTTAATTTATT
86868725 ATTTAATTTGATT
1 ATTTAATTT-ATT
86868738 A
1 A
86868739 AACATTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (12 bp):
ATTTAATTTATT
Found at i:86870625 original size:2 final size:2
Alignment explanation
Indices: 86870618--86870647 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
86870608 TAGAATCAGA
*
86870618 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86870648 GTAATACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86870881 original size:14 final size:15
Alignment explanation
Indices: 86870856--86870896 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
86870846 GGTGTTCAAA
86870856 ATATATACATAACAT
1 ATATATACATAACAT
*
86870871 A-ATATATATAA-AT
1 ATATATACATAACAT
86870884 ATATATACATAAC
1 ATATATACATAAC
86870897 GTAGTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.14
14 18 0.82
15 1 0.05
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATACATAACAT
Found at i:86871800 original size:14 final size:14
Alignment explanation
Indices: 86871771--86871811 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
86871761 AAAAAAAAAG
86871771 GAAAGGAGA-AGAGA
1 GAAAGGAGAGAG-GA
86871785 GAAAAGG-GAGAGGA
1 G-AAAGGAGAGAGGA
86871799 GAAAGGAGAGAGG
1 GAAAGGAGAGAGG
86871812 GGGGACTGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.21
14 12 0.50
15 7 0.29
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (14 bp):
GAAAGGAGAGAGGA
Found at i:86871946 original size:16 final size:16
Alignment explanation
Indices: 86871925--86871964 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
86871915 TAAAAATTTG
* *
86871925 ATTTTTTTTATTTTTT
1 ATTTTTTATATGTTTT
86871941 ATTTTTTATATGTTTT
1 ATTTTTTATATGTTTT
86871957 ATATTTTT
1 AT-TTTTT
86871965 GCACTATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
ATTTTTTATATGTTTT
Found at i:86872513 original size:21 final size:20
Alignment explanation
Indices: 86872483--86872523 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
86872473 AGTAGGTTTA
86872483 GTTATTGGGTTTTGGGGTGG
1 GTTATTGGGTTTTGGGGTGG
86872503 GTTAGTTGGGTTTTGGGGTGG
1 GTTA-TTGGGTTTTGGGGTGG
86872524 CCCAAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.05, C:0.00, G:0.51, T:0.44
Consensus pattern (20 bp):
GTTATTGGGTTTTGGGGTGG
Found at i:86873658 original size:7 final size:7
Alignment explanation
Indices: 86873596--86873658 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
86873586 TATATATTTA
86873596 TTTATAT
1 TTTATAT
86873603 TGTTAT-T
1 T-TTATAT
*
86873610 TGTTTTAT
1 T-TTATAT
86873618 CTTTA-AT
1 -TTTATAT
86873625 TTTA-ATT
1 TTTATA-T
*
86873632 TTTATGT
1 TTTATAT
86873639 TTTATAT
1 TTTATAT
86873646 TTTATAT
1 TTTATAT
86873653 TTTATA
1 TTTATA
86873659 ATATTATTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 5 0.11
7 34 0.72
8 7 0.15
9 1 0.02
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.70
Consensus pattern (7 bp):
TTTATAT
Found at i:86873682 original size:14 final size:15
Alignment explanation
Indices: 86873580--86873689 Score: 50
Period size: 15 Copynumber: 7.2 Consensus size: 15
86873570 CCTATATATA
86873580 TATATATATATATTTATT
1 TATAT-TAT-TATTTA-T
* *
86873598 TATATTGTTATTTGT
1 TATATTATTATTTAT
* *
86873613 TTTATCT-TTAATT-T
1 TATAT-TATTATTTAT
*
86873627 TA-ATTTTTATGTT-T
1 TATATTATTAT-TTAT
*
86873641 TATATTTTATATTTTAT
1 TATATTAT-TA-TTTAT
*
86873658 AATATTATTATTTAT
1 TATATTATTATTTAT
*
86873673 TATA-TATTATATAT
1 TATATTATTATTTAT
86873687 TAT
1 TAT
86873690 TTTTCACGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
12 1 0.01
13 5 0.07
14 19 0.25
15 23 0.31
16 12 0.16
17 10 0.13
18 5 0.07
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (15 bp):
TATATTATTATTTAT
Found at i:86874093 original size:26 final size:27
Alignment explanation
Indices: 86874037--86874094 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
86874027 TTTAAAAATG
*
86874037 ATATTTTTATATTCTTTTATATACTCT
1 ATATTTTTATATTCTTTTATATACTAT
86874064 -TATTTTTATATTCTTTTA-A-ACTAAT
1 ATATTTTTATATTCTTTTATATACT-AT
86874089 ATATTT
1 ATATTT
86874095 CCTATGCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTTTATATTCTTTTATATACTAT
Found at i:86877957 original size:15 final size:15
Alignment explanation
Indices: 86877923--86877970 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
86877913 ATATTCTTTA
86877923 TGCAT-TCATGCATT
1 TGCATCTCATGCATT
86877937 TGCATCTCATGGCATT
1 TGCATCTCAT-GCATT
*
86877953 T-CATCACAT-CATT
1 TGCATCTCATGCATT
86877966 TGCAT
1 TGCAT
86877971 TCAAGGTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 11 0.37
16 6 0.20
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (15 bp):
TGCATCTCATGCATT
Found at i:86886159 original size:119 final size:119
Alignment explanation
Indices: 86885976--86886421 Score: 757
Period size: 119 Copynumber: 3.7 Consensus size: 119
86885966 AGACAATTAG
* * *
86885976 ACTGAAGCAGAGCCAAAATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
*
86886041 GATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
66 GATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
*
86886095 ACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTATTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* * *
86886160 GATTTGACTCTTAGATGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTAG
66 GATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
*
86886214 ACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
1 ACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
* *
86886279 GATTTGACTCTCAGATGTTCTTAGATATAGCAGATCTAACCATCAGATGTTTAT
66 GATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
* * *
86886333 ACTGAAGCAAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGT
1 ACTGAAGCAA-ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
86886398 AGATTTGACTCTCAGATGTTCTCA
65 AGATTTGACTCTCAGATGTTCTCA
86886422 AACAGACTCA
Statistics
Matches: 306, Mismatches: 20, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
119 232 0.76
120 74 0.24
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (119 bp):
ACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCA
GATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTAT
Found at i:86888297 original size:29 final size:28
Alignment explanation
Indices: 86888239--86888340 Score: 72
Period size: 29 Copynumber: 3.7 Consensus size: 28
86888229 GTTATTTGTT
* *
86888239 TTATCTTTA-ATTTTA-ATTTTTACATT
1 TTATTTTTATATTTTATATTTTTACATA
86888265 TTATGTTTTATATTTTATATTTTATA-ATA
1 TTAT-TTTTATATTTTATATTTT-TACATA
* *
86888294 TTATTTATTATATATTAT-TTTTCACGA-A
1 TTATTT-TTATATTTTATATTTTTAC-ATA
* *
86888322 TTATTATTAT-TTTTTTATT
1 TTATTTTTATATTTTATATT
86888341 ATTATAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
26 8 0.13
27 11 0.18
28 18 0.30
29 22 0.36
30 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (28 bp):
TTATTTTTATATTTTATATTTTTACATA
Found at i:86888713 original size:26 final size:27
Alignment explanation
Indices: 86888657--86888714 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
86888647 TTTAAAAATG
*
86888657 ATATTTTTATATTCTTTTATATACTCT
1 ATATTTTTATATTCTTTTATATACTAT
86888684 -TATTTTTATATTCTTTTA-A-ACTAAT
1 ATATTTTTATATTCTTTTATATACT-AT
86888709 ATATTT
1 ATATTT
86888715 CCTATGCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTTTATATTCTTTTATATACTAT
Found at i:86888796 original size:20 final size:21
Alignment explanation
Indices: 86888757--86888796 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
86888747 TATATACTAC
*
86888757 ATATTATATTTTAGAATTATTA
1 ATATCATATTTTA-AATTATTA
86888779 ATATCATATTTT-AATTAT
1 ATATCATATTTTAAATTAT
86888797 GTGTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATCATATTTTAAATTATTA
Found at i:86889461 original size:17 final size:17
Alignment explanation
Indices: 86889441--86889474 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
86889431 CTAACTTATT
86889441 AGATGTAGTGTTTTGTC
1 AGATGTAGTGTTTTGTC
86889458 AGATGTAGTGTTTTGTC
1 AGATGTAGTGTTTTGTC
86889475 GTTTCGAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.29, T:0.47
Consensus pattern (17 bp):
AGATGTAGTGTTTTGTC
Found at i:86890567 original size:6 final size:6
Alignment explanation
Indices: 86890556--86890717 Score: 138
Period size: 6 Copynumber: 26.8 Consensus size: 6
86890546 AACCAAAATG
*
86890556 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
86890604 AGTAAT- AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * *
86890653 AGAATC CGTAA-C ATAATC AGAATC AGAATC AGTATT AGTAA-C AAAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
86890701 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
86890718 TACGTGACAA
Statistics
Matches: 126, Mismatches: 17, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
5 11 0.09
6 104 0.83
7 9 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:86890571 original size:30 final size:30
Alignment explanation
Indices: 86890556--86890742 Score: 208
Period size: 30 Copynumber: 6.4 Consensus size: 30
86890546 AACCAAAATG
*
86890556 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
86890586 AGAATCAGAATCA-ATATTAGTAATAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
86890616 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
* ** *
86890641 AGAATTAGAATCAGAATCCGTAACATAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
86890671 AGAATCAGAATCAGTATTAGTAACAAAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
86890701 AGAATCAGAATCAGAATTACGTGACAAAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
86890732 AGAATCAGAAT
1 AGAATCAGAAT
86890743 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
24 2 0.01
25 17 0.13
26 1 0.01
27 1 0.01
29 2 0.01
30 87 0.65
31 24 0.18
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:86890655 original size:85 final size:85
Alignment explanation
Indices: 86890556--86890742 Score: 302
Period size: 85 Copynumber: 2.2 Consensus size: 85
86890546 AACCAAAATG
* *
86890556 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAATAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAGAAT
*
86890621 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* * * *
86890641 AGAATTAGAATCAGAATCCGTAACATAATCAGAATCAGAATCAGTATTAGTAACAAAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAGAAT
86890706 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
*
86890726 AAAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
86890743 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:86890897 original size:27 final size:26
Alignment explanation
Indices: 86890860--86890925 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
86890850 AGCATGGCTG
*
86890860 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
86890886 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
86890913 CCAGAATCAGATA
1 CCAGAA-CAGATA
86890926 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:86890930 original size:27 final size:27
Alignment explanation
Indices: 86890860--86890933 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
86890850 AGCATGGCTG
* *
86890860 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
86890886 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
86890913 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
86890934 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:86890940 original size:27 final size:27
Alignment explanation
Indices: 86890884--86890941 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
86890874 GTGACAGAGT
* * *
86890884 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
86890911 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
86890938 CACC
1 CACC
86890942 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:86891146 original size:22 final size:22
Alignment explanation
Indices: 86891098--86891156 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
86891088 GTAAATACGT
*
86891098 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
86891120 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
86891142 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
86891157 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:86891323 original size:27 final size:26
Alignment explanation
Indices: 86891244--86891326 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
86891234 TTGATCGGTC
* *
86891244 AACAGATATTGTGACAGAGCCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
86891270 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
86891297 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
86891324 AAC
1 AAC
86891327 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:86891555 original size:27 final size:27
Alignment explanation
Indices: 86891525--86891693 Score: 203
Period size: 27 Copynumber: 6.3 Consensus size: 27
86891515 GGGGCAAAAT
* * *
86891525 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
86891552 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86891579 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86891606 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
86891633 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
86891660 GGAAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
86891687 AGTAATT
1 GGTAATT
86891694 TCACAATCAA
Statistics
Matches: 124, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:86891682 original size:54 final size:54
Alignment explanation
Indices: 86891526--86891693 Score: 228
Period size: 54 Copynumber: 3.1 Consensus size: 54
86891516 GGGCAAAATG
* * * * *
86891526 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
* * * *
86891580 GTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
* * *
86891634 GTAATTCTACCCTATAGGGGTATTTCGGAAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
86891688 GTAATT
1 GTAATT
86891694 TCACAATCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
Found at i:86891692 original size:81 final size:81
Alignment explanation
Indices: 86891541--86891693 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
86891531 TTTACCCCAC
* * * *
86891541 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTT
1 AAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGAAATTCTACCCTACAAGGGTATTTC
*
86891606 GGTAATTCTATCCTAT
66 AGTAATTCTATCCTAT
* * * *
86891622 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGAAATTCTACCCTATAGGGGTATTTC
1 AAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGAAATTCTACCCTACAAGGGTATTTC
86891687 AGTAATT
66 AGTAATT
86891694 TCACAATCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (81 bp):
AAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGAAATTCTACCCTACAAGGGTATTTC
AGTAATTCTATCCTAT
Found at i:86891728 original size:27 final size:27
Alignment explanation
Indices: 86891698--86892134 Score: 503
Period size: 27 Copynumber: 16.2 Consensus size: 27
86891688 GTAATTTCAC
* *
86891698 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
86891725 AATCGAGGGTAAAA-TGATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
86891752 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-AGTAATTCTGTA
* * **
86891779 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
86891806 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86891833 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
86891860 AA-CTAAAGGTAAAAC-GATAATTCTGTA
1 AATC-GAGGGTAAAACAG-TAATTCTGTA
* * **
86891887 AATCGAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
86891914 AATCGAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
86891941 AATCGAGGGTAAAATAGTAATTCTGTAA
1 AATCGAGGGTAAAACAGTAATTCTGT-A
*
86891969 AAT-GAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
86891995 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
86892022 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* *
86892049 AA-CTGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **
86892076 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86892103 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
86892130 AATCG
1 AATCG
86892135 GGAGTACTTT
Statistics
Matches: 356, Mismatches: 40, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
26 12 0.03
27 331 0.93
28 13 0.04
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:86893870 original size:15 final size:15
Alignment explanation
Indices: 86893850--86893880 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86893840 TCTCACATGA
86893850 TGTTTCACATGTTAT
1 TGTTTCACATGTTAT
86893865 TGTTTCACATGTTAT
1 TGTTTCACATGTTAT
86893880 T
1 T
86893881 CAAGTTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (15 bp):
TGTTTCACATGTTAT
Found at i:86895087 original size:17 final size:17
Alignment explanation
Indices: 86895044--86895078 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
86895034 TATCTCAAAA
* *
86895044 TAAAATTATATTTATAT
1 TAAAATTTTAATTATAT
86895061 TAAAATTTTAATTATAT
1 TAAAATTTTAATTATAT
86895078 T
1 T
86895079 TATATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAAATTTTAATTATAT
Found at i:86911660 original size:93 final size:93
Alignment explanation
Indices: 86911526--86911697 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86911516 CACCCATAAG
* * * * *
86911526 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86911591 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
86911619 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86911684 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86911698 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86911694 original size:46 final size:45
Alignment explanation
Indices: 86911519--86911694 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
86911509 TGTAACCCAC
* * * * *
86911519 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTGCAT
* *
86911565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCAT
*
86911615 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
*
86911658 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86911695 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Found at i:86911713 original size:46 final size:44
Alignment explanation
Indices: 86911570--86911713 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
86911560 TGTATCCATA
86911570 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
86911617 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
86911663 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
86911709 AGTGA
1 AGTGA
86911714 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:86918678 original size:12 final size:11
Alignment explanation
Indices: 86918623--86918690 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 11
86918613 AAGGAGTTTA
*
86918623 ATAAAATAAAA
1 ATAAAATAAAG
*
86918634 ATAAACAGAAA-
1 ATAAA-ATAAAG
86918645 ATTAAAATTAAA-
1 A-TAAAA-TAAAG
86918657 ATTAAAATAAAG
1 A-TAAAATAAAG
86918669 ATAAAGATAAAG
1 ATAAA-ATAAAG
86918681 ATAAAATAAA
1 ATAAAATAAA
86918691 TGAGATGGAC
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
11 20 0.40
12 30 0.60
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAG
Found at i:86918686 original size:29 final size:28
Alignment explanation
Indices: 86918622--86918690 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
86918612 AAAGGAGTTT
86918622 AATAAAATAAAAATAAACAGAAAATTAA
1 AATAAAATAAAAATAAACAGAAAATTAA
* * *
86918650 AATTAAAATTAAAATAAAGATAAAGA-TAA
1 AA-TAAAATAAAAATAAACAGAAA-ATTAA
86918679 AGATAAAATAAA
1 A-ATAAAATAAA
86918691 TGAGATGGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
28 2 0.06
29 30 0.88
30 2 0.06
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.20
Consensus pattern (28 bp):
AATAAAATAAAAATAAACAGAAAATTAA
Found at i:86920360 original size:3 final size:3
Alignment explanation
Indices: 86920352--86920424 Score: 103
Period size: 3 Copynumber: 24.3 Consensus size: 3
86920342 TTACCAAACG
86920352 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
86920400 AAC AA- AAT TAT AAT CAAT AGT AAT A
1 AAT AAT AAT AAT AAT -AAT AAT AAT A
86920425 TAGAAAATGA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
2 2 0.03
3 58 0.92
4 3 0.05
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:86932037 original size:2 final size:2
Alignment explanation
Indices: 86932030--86932058 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
86932020 CGCATTAAAC
86932030 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86932059 ACCGAACTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86940188 original size:2 final size:2
Alignment explanation
Indices: 86940181--86940207 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86940171 TGCATTAAAC
86940181 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
86940208 ACCGAACTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86945983 original size:16 final size:16
Alignment explanation
Indices: 86945937--86945987 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
86945927 GAAATTTTAG
*
86945937 TTTGTTAGATTTTGAA
1 TTTGTTAGATATTGAA
* * *
86945953 ATTATTATG-TCTTGAA
1 TTTGTTA-GATATTGAA
86945969 TTTGTTAGATATTGAA
1 TTTGTTAGATATTGAA
86945985 TTT
1 TTT
86945988 ATTATGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
15 1 0.04
16 25 0.93
17 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.16, T:0.55
Consensus pattern (16 bp):
TTTGTTAGATATTGAA
Found at i:86946006 original size:32 final size:32
Alignment explanation
Indices: 86945938--86946018 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
86945928 AAATTTTAGT
* *
86945938 TTGTTAGATTTTGAAATTATTATGTCTTGAAT
1 TTGTTAGATATTGAAATTATTATGTCTTGAAC
* *
86945970 TTGTTAGATATTGAATTTATTATGT-TTTAAGC
1 TTGTTAGATATTGAAATTATTATGTCTTGAA-C
*
86946002 TTGTTGGATATTGAAAT
1 TTGTTAGATATTGAAAT
86946019 GATTGACAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 4 0.10
32 38 0.90
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.52
Consensus pattern (32 bp):
TTGTTAGATATTGAAATTATTATGTCTTGAAC
Found at i:86947767 original size:26 final size:26
Alignment explanation
Indices: 86947738--86947789 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
86947728 ATCCATAAGT
*
86947738 GAACTCGAACTCAACTCAACGAGTTC
1 GAACTCGAACTCAACTCAACAAGTTC
*
86947764 GAACTCGGACTCAACTCAACAAGTTC
1 GAACTCGAACTCAACTCAACAAGTTC
86947790 AGACGTTCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.31, G:0.15, T:0.19
Consensus pattern (26 bp):
GAACTCGAACTCAACTCAACAAGTTC
Found at i:86947808 original size:72 final size:72
Alignment explanation
Indices: 86947691--86947836 Score: 249
Period size: 72 Copynumber: 2.0 Consensus size: 72
86947681 TTACATCTCA
*
86947691 CGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGTTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
86947756 ACGAGTT
66 ACAAGTT
*
86947763 CGAACTCGGACTCAACTCAACAAGTTC-AGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGTTCGA-ACGTTCGCATCCATAAGTGAACTCGAACTCAACTC
86947827 AACAAGTT
65 AACAAGTT
86947835 CG
1 CG
86947837 GATGTCCAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 1 0.01
72 69 0.99
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (72 bp):
CGAACTCGGACTCAACTCAACAAGTTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACAAGTT
Found at i:86951451 original size:12 final size:12
Alignment explanation
Indices: 86951434--86951458 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86951424 TTTTAAAATT
86951434 ATGAATAATATA
1 ATGAATAATATA
86951446 ATGAATAATATA
1 ATGAATAATATA
86951458 A
1 A
86951459 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:86951507 original size:10 final size:10
Alignment explanation
Indices: 86951488--86951559 Score: 63
Period size: 11 Copynumber: 6.5 Consensus size: 10
86951478 ATAATATACG
*
86951488 ATATACATAAC
1 ATATA-ATAAA
86951499 ATATAATAAAAA
1 ATATAAT--AAA
*
86951511 ATAATAAGTAAT
1 AT-ATAA-TAAA
86951523 ATATAATAAAA
1 ATATAAT-AAA
86951534 ATATAATAAA
1 ATATAATAAA
86951544 ATATAATATAA
1 ATATAATA-AA
86951555 ATATA
1 ATATA
86951560 TAGGAAAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
10 14 0.27
11 25 0.48
12 8 0.15
13 4 0.08
14 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (10 bp):
ATATAATAAA
Found at i:86951530 original size:14 final size:11
Alignment explanation
Indices: 86951499--86951559 Score: 72
Period size: 10 Copynumber: 5.5 Consensus size: 11
86951489 TATACATAAC
86951499 ATATAATAAAA
1 ATATAATAAAA
86951510 A-ATAATAAGTAA
1 ATATAATAA--AA
86951522 TATATAATAAAA
1 -ATATAATAAAA
86951534 ATATAAT-AAA
1 ATATAATAAAA
*
86951544 ATATAATATAA
1 ATATAATAAAA
86951555 ATATA
1 ATATA
86951560 TAGGAAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
10 17 0.39
11 15 0.34
12 4 0.09
13 1 0.02
14 7 0.16
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:86951546 original size:23 final size:24
Alignment explanation
Indices: 86951499--86951561 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 24
86951489 TATACATAAC
86951499 ATATAATAAAAA-ATAATAAGTAAT
1 ATATAATAAAAATATAATAAG-AAT
86951523 ATATAATAAAAATATAATAA-AAT
1 ATATAATAAAAATATAATAAGAAT
*
86951546 ATA-ATATAAATATATA
1 ATATA-ATAAAAATATA
86951562 GGAAAATAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 1 0.03
23 16 0.44
24 12 0.33
25 7 0.19
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
ATATAATAAAAATATAATAAGAAT
Found at i:86951567 original size:23 final size:23
Alignment explanation
Indices: 86951499--86951583 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 23
86951489 TATACATAAC
* *
86951499 ATATAATA-AAAAATAATAAGTAAT
1 ATATAATATAAATAT-ATAAG-AAA
*
86951523 ATATAATA-AAA-ATATAATAAA
1 ATATAATATAAATATATAAGAAA
*
86951544 ATATAATATAAATATATAGGAAA
1 ATATAATATAAATATATAAGAAA
86951567 ATAATATATGATAAATA
1 AT-ATA-AT-ATAAATA
86951584 AAAATTTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
21 10 0.19
22 7 0.13
23 12 0.23
24 14 0.27
25 2 0.04
26 7 0.13
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.31
Consensus pattern (23 bp):
ATATAATATAAATATATAAGAAA
Found at i:86951570 original size:21 final size:21
Alignment explanation
Indices: 86951478--86951606 Score: 77
Period size: 21 Copynumber: 5.9 Consensus size: 21
86951468 AATATAACAG
* *
86951478 ATAATATACGATATACATAACAT
1 ATAATATA-AATATA-ATAAAAT
* *
86951501 ATAATAAAAAATAATAAGTAATAT
1 ATAAT-ATAAAT-ATAA-TAAAAT
*
86951525 ATAATAAAAATATAATAAAAT
1 ATAATATAAATATAATAAAAT
86951546 ATAATATAAATAT-ATAGGAAA-
1 ATAATATAAATATAATA--AAAT
*
86951567 ATAATATATGATA-AATAAAAAT
1 ATAATATA-AATATAAT-AAAAT
* *
86951589 TTTATATAAATAT-ATAAA
1 ATAATATAAATATAATAAA
86951607 TAGTACTTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
20 6 0.07
21 33 0.38
22 18 0.21
23 15 0.17
24 15 0.17
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
ATAATATAAATATAATAAAAT
Found at i:86951635 original size:26 final size:24
Alignment explanation
Indices: 86951597--86951648 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
86951587 ATTTTATATA
86951597 AATATATAAATAGTACTTTTAATAAT
1 AATATATAAATAGT--TTTTAATAAT
** *
86951623 AATATATGTATAGTTTTTTATAAT
1 AATATATAAATAGTTTTTAATAAT
86951647 AA
1 AA
86951649 ATAAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 11 0.48
26 12 0.52
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (24 bp):
AATATATAAATAGTTTTTAATAAT
Found at i:86951658 original size:24 final size:24
Alignment explanation
Indices: 86951613--86951658 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
86951603 TAAATAGTAC
*
86951613 TTTTAATAATAATATATGTATAGT
1 TTTTAATAATAATAAATGTATAGT
*
86951637 TTTTTATAATAAATAAAT-TATA
1 TTTTAATAAT-AATAAATGTATA
86951659 TATATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (24 bp):
TTTTAATAATAATAAATGTATAGT
Found at i:86953115 original size:19 final size:18
Alignment explanation
Indices: 86953074--86953121 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
86953064 GTTTTATTTC
86953074 TTATATATTTTCATTACTA
1 TTAT-TATTTTCATTACTA
*
86953093 TTATGTATTTTCATTA-TGT
1 TTAT-TATTTTCATTACT-A
86953112 TTATTATTTT
1 TTATTATTTT
86953122 TTCCTTTGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (18 bp):
TTATTATTTTCATTACTA
Found at i:86953883 original size:44 final size:44
Alignment explanation
Indices: 86953820--86953907 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
86953810 ACACAAGAAG
*
86953820 TATGAACCATTTTTGAATAAAAGCATTGATCATTATGATGAAAT
1 TATGAACCATTTTTGAATAAAAGCATTAATCATTATGATGAAAT
86953864 TATGAACCATTTTTGAATAAAAGCATTAATCATTATGATGAAAT
1 TATGAACCATTTTTGAATAAAAGCATTAATCATTATGATGAAAT
86953908 GCCTTTGGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (44 bp):
TATGAACCATTTTTGAATAAAAGCATTAATCATTATGATGAAAT
Found at i:86953897 original size:23 final size:23
Alignment explanation
Indices: 86953827--86953897 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
86953817 AAGTATGAAC
*
86953827 CATTTTTGAATAAAAGCATTGAT
1 CATTTTTGAATAAAAGCATTAAT
* * ** * *
86953850 CA-TTATG-ATGAAATTATGAAC
1 CATTTTTGAATAAAAGCATTAAT
86953871 CATTTTTGAATAAAAGCATTAAT
1 CATTTTTGAATAAAAGCATTAAT
86953894 CATT
1 CATT
86953898 ATGATGAAAT
Statistics
Matches: 33, Mismatches: 13, Indels: 4
0.66 0.26 0.08
Matches are distributed among these distances:
21 10 0.30
22 8 0.24
23 15 0.45
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (23 bp):
CATTTTTGAATAAAAGCATTAAT
Found at i:86954229 original size:17 final size:17
Alignment explanation
Indices: 86954207--86954239 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86954197 GATGAGGTAG
*
86954207 AAGGATTTGATGATGAA
1 AAGGATTTGATAATGAA
86954224 AAGGATTTGATAATGA
1 AAGGATTTGATAATGA
86954240 CTTCCTGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (17 bp):
AAGGATTTGATAATGAA
Found at i:86957076 original size:60 final size:60
Alignment explanation
Indices: 86957002--86957136 Score: 150
Period size: 60 Copynumber: 2.2 Consensus size: 60
86956992 AACTATGTTA
* *
86957002 ATATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGACTACGG-CCAAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCTCATAC-TGTAA-AGGACTACGGCCCAA-ATTAATACTG
* * * * *
86957062 ATATGGGCTAGGCCCAGTATACTCTGATACTGTAAAGGGCTATGGCCCAAATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTCATACTGTAAAGGACTACGGCCCAAATTAATACTG
86957122 ATATGGGCTAAGGCC
1 ATATGGGCT-AGGCC
86957137 TAGTTAACTC
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 44 0.69
61 18 0.28
62 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTCATACTGTAAAGGACTACGGCCCAAATTAATACTG
Found at i:86962218 original size:61 final size:62
Alignment explanation
Indices: 86962080--86962230 Score: 159
Period size: 60 Copynumber: 2.5 Consensus size: 62
86962070 CCAACTGTGT
* * * *
86962080 TAATATCGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCCACGGCCAAGATTGATAC
1 TAATATGGGCAAGGCCCAGTATACTCTGATACTTGTAATAGGGCCACGGCCAAGATTAATAC
* * * * *
86962140 TAATATGGGCCAGGCCCAGTATACTCTGATAC-TGTAAT-GGGCTATGGCCCAGATTAATAT
1 TAATATGGGCAAGGCCCAGTATACTCTGATACTTGTAATAGGGCCACGGCCAAGATTAATAC
*
86962200 TGATATGGGCTAAGGCCCAGT-TAACTCTGAT
1 TAATATGGGC-AAGGCCCAGTAT-ACTCTGAT
86962231 TTCTGAATAG
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
60 47 0.62
61 27 0.36
62 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (62 bp):
TAATATGGGCAAGGCCCAGTATACTCTGATACTTGTAATAGGGCCACGGCCAAGATTAATAC
Found at i:86962427 original size:18 final size:19
Alignment explanation
Indices: 86962404--86962441 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
86962394 TTACTTGGAC
86962404 TCTAATTCT-GTTTTAAAT
1 TCTAATTCTGGTTTTAAAT
*
86962422 TCTAATTTTGGTTTTAAAT
1 TCTAATTCTGGTTTTAAAT
86962441 T
1 T
86962442 TTGTAATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (19 bp):
TCTAATTCTGGTTTTAAAT
Found at i:86966989 original size:7 final size:7
Alignment explanation
Indices: 86966977--86967003 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86966967 GCGCAAACAT
86966977 GTTTAGG
1 GTTTAGG
86966984 GTTTAGG
1 GTTTAGG
86966991 GTTTAGG
1 GTTTAGG
86966998 GTTTAG
1 GTTTAG
86967004 AGCTATCGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:86968131 original size:10 final size:9
Alignment explanation
Indices: 86968110--86968143 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
86968100 GAATCCTCTA
86968110 TTCTTTTTC
1 TTCTTTTTC
86968119 TTCTTTATTC
1 TTCTTT-TTC
86968129 TTCTATTTTC
1 TTCT-TTTTC
86968139 TTCTT
1 TTCTT
86968144 AAATCGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 7 0.30
10 14 0.61
11 2 0.09
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.74
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:86968860 original size:2 final size:2
Alignment explanation
Indices: 86968853--86968877 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86968843 CCTTGTTAAT
86968853 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
86968878 TCTGCATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86969241 original size:60 final size:59
Alignment explanation
Indices: 86969166--86969301 Score: 152
Period size: 59 Copynumber: 2.3 Consensus size: 59
86969156 AACTGTGTTA
* *
86969166 ATATGGGC-AGGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACGGCCAAGATTGATACTG
1 ATATGGGCTA-GGCCCAATATACTCTAATAC-TGT-A-AGGGCTACGGCCAAGATTAATACTG
* * * *
86969226 ATATGGGCTAGGCCCAGTATACTCTAATACTGTAAGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTAATACTGTAAGGGCTACGGCCAAGATTAATACTG
86969285 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
86969302 GTTAACTCTG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
59 30 0.45
60 26 0.39
61 8 0.12
62 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTAATACTGTAAGGGCTACGGCCAAGATTAATACTG
Found at i:86969294 original size:28 final size:27
Alignment explanation
Indices: 86969202--86969306 Score: 88
Period size: 28 Copynumber: 3.7 Consensus size: 27
86969192 ACTTGTAATA
* *
86969202 GGGCTACGGCCAAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
*
86969230 GGGCTAGGCCCAGTATACTCTAATACTG-TAA
1 GGGCTAGGCCCAG---A-T-TAATACTGATAT
*
86969261 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
86969289 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
86969307 CTCTGATTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
27 17 0.27
28 21 0.33
29 2 0.03
30 1 0.02
31 9 0.14
32 14 0.22
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATACTGATAT
Found at i:86970339 original size:19 final size:19
Alignment explanation
Indices: 86970312--86970353 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
86970302 CAAATACCAA
86970312 AAAAATAAAT-TATTTCCAG
1 AAAAATAAATCT-TTTCCAG
*
86970331 AAAAGTAAATCGTTTTCCAG
1 AAAAATAAATC-TTTTCCAG
86970351 AAA
1 AAA
86970354 TAATTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 10 0.50
21 1 0.05
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
AAAAATAAATCTTTTCCAG
Found at i:86971349 original size:29 final size:29
Alignment explanation
Indices: 86971330--86971386 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
86971320 ATTTATTATT
86971330 ATTTT-AAAATAATTTTAATAATTTTAAA
1 ATTTTAAAAATAATTTTAATAATTTTAAA
86971358 ATTTTAAAAATAATTTT--TAAGTTTTAAA
1 ATTTTAAAAATAATTTTAATAA-TTTTAAA
86971386 A
1 A
86971387 AGTTAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 3 0.11
28 13 0.48
29 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
ATTTTAAAAATAATTTTAATAATTTTAAA
Found at i:86971369 original size:20 final size:20
Alignment explanation
Indices: 86971346--86971387 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
86971336 AAATAATTTT
86971346 AATAATTTTAAAATTTTAAA
1 AATAATTTTAAAATTTTAAA
* *
86971366 AATAATTTTTAAGTTTTAAA
1 AATAATTTTAAAATTTTAAA
86971386 AA
1 AA
86971388 GTTAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
AATAATTTTAAAATTTTAAA
Found at i:86971665 original size:16 final size:16
Alignment explanation
Indices: 86971640--86971678 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
86971630 TAAAAGAAGG
86971640 AAAC-TTTTTAGTTAGA
1 AAACTTTTTTA-TTAGA
86971656 AAA-TTTTTTATTAGA
1 AAACTTTTTTATTAGA
86971671 AAACTTTT
1 AAACTTTT
86971679 ACTCATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (16 bp):
AAACTTTTTTATTAGA
Found at i:86972399 original size:106 final size:106
Alignment explanation
Indices: 86972205--86972405 Score: 253
Period size: 106 Copynumber: 1.9 Consensus size: 106
86972195 AAATATCGCT
* * * * * *
86972205 AATTAAATCAATTTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCGGGAAGAAAATCATGTCA
1 AATTAAATAAAATGTTATGAAAAATGCCTTCGTATTTCAAGTTAATCAGGAAGAAAATCATGCCA
*
86972270 CGTAAGTTAGTGTACGATATCTCAAATTCCCTAAATTAAGA
66 CGTAAGTTAGTGCACGATATCTCAAATTCCCTAAATTAAGA
* * * *
86972311 AATTAAATAAAATGTTATGAAGAATGTCTTTGTATTTCAAGTTAATCAGGACGAAAATCATGCC-
1 AATTAAATAAAATGTTATGAAAAATGCCTTCGTATTTCAAGTTAATCAGGAAGAAAATCATGCCA
* *
86972375 CAGTAAGTTAAG-GCATGATGTCTCAAATTCC
66 C-GTAAGTT-AGTGCACGATATCTCAAATTCC
86972406 TGAAAATAAG
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
105 1 0.01
106 77 0.96
107 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (106 bp):
AATTAAATAAAATGTTATGAAAAATGCCTTCGTATTTCAAGTTAATCAGGAAGAAAATCATGCCA
CGTAAGTTAGTGCACGATATCTCAAATTCCCTAAATTAAGA
Found at i:86975428 original size:28 final size:28
Alignment explanation
Indices: 86975407--86975465 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
86975397 CAATTTCTTG
86975407 TTCTCGATTTTTTATTTTCAATTGTCAA
1 TTCTCGATTTTTTATTTTCAATTGTCAA
* * *
86975435 TTCTCGATTTTTTATTCTAAATTCTCAA
1 TTCTCGATTTTTTATTTTCAATTGTCAA
86975463 TTC
1 TTC
86975466 CAAATTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.05, T:0.56
Consensus pattern (28 bp):
TTCTCGATTTTTTATTTTCAATTGTCAA
Done.