Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 309 of 444
Found at i:89186120 original size:19 final size:18
Alignment explanation
Indices: 89186079--89186122 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
89186069 TAACACTTTT
*
89186079 TTTTTTTTATTTTGATAA
1 TTTTTTATATTTTGATAA
* *
89186097 CTTTTTATATTTTTATTAA
1 TTTTTTATATTTTGA-TAA
89186116 TTTTTTA
1 TTTTTTA
89186123 AAATTTCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTTATATTTTGATAA
Found at i:89186138 original size:28 final size:28
Alignment explanation
Indices: 89186107--89186169 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 28
89186097 CTTTTTATAT
*
89186107 TTTTATTAATTTTTTAAAATTTCAAA-AC
1 TTTTATTAATATTTT-AAATTTCAAAGAC
*
89186135 TTTT-TTTATATTTTAAATTTCAAAGTAC
1 TTTTATTAATATTTTAAATTTCAAAG-AC
89186163 TTTTATT
1 TTTTATT
89186170 TTTTTCGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 10 0.33
27 8 0.27
28 10 0.33
29 2 0.07
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (28 bp):
TTTTATTAATATTTTAAATTTCAAAGAC
Found at i:89189924 original size:6 final size:6
Alignment explanation
Indices: 89189913--89189951 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
89189903 TTATTTATTT
89189913 CTTAAA CTTAAA CTTAAA CTTAAA CTTAAA CTTAAA CTT
1 CTTAAA CTTAAA CTTAAA CTTAAA CTTAAA CTTAAA CTT
89189952 TAAAACTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (6 bp):
CTTAAA
Found at i:89192040 original size:12 final size:12
Alignment explanation
Indices: 89192025--89192072 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
89192015 TTGAAGAAAG
89192025 AATTATTAAGTA
1 AATTATTAAGTA
*
89192037 AATTATTATA-TG
1 AATTATTA-AGTA
*
89192049 AATTATTAAATA
1 AATTATTAAGTA
*
89192061 AGTTATTAAGTA
1 AATTATTAAGTA
89192073 TAGTAGAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 1 0.03
12 28 0.93
13 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
AATTATTAAGTA
Found at i:89199901 original size:55 final size:55
Alignment explanation
Indices: 89199833--89199952 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
89199823 CATGCCCTTA
*
89199833 GCCCATGTGCAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
1 GCCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
89199888 GCCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
1 GCCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
* *
89199943 ACCCGTGTAC
1 GCCCATGTAC
89199953 TAAATTGACT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.18
Consensus pattern (55 bp):
GCCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCT
Found at i:89200933 original size:47 final size:47
Alignment explanation
Indices: 89200735--89200950 Score: 158
Period size: 49 Copynumber: 4.6 Consensus size: 47
89200725 TTATTGGTGC
* * * *
89200735 CATGTCCCAGACATGGTCTCACACAGGCTATC-ATCATCGAGGCCGATGC
1 CATGTCCCAGACA-GGTCTTACACTGGCTATCGAT-ATCAAGGCCGAT-A
* * * * *
89200784 CATGTCCCAGACATGGTCTTATACTAGCTCTCGTATAT-ACGTGCTGATA
1 CATGTCCCAGACA-GGTCTTACACTGGCTATCG-ATATCAAG-GCCGATA
* * * * *
89200833 CATGTCCCGGACATGTCTTACACTAGC-A-CGAT-TCTTA-GTCGATA
1 CATGTCCCAGACAGGTCTTACACTGGCTATCGATATC-AAGGCCGATA
* *
89200877 CATGTCCCAGACACGTCTTACACTGGCTATC-ATCATCAAGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGGCTATCGAT-ATCAAGGCCGATA
*
89200924 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACAGGTCTTACACTGGC
89200951 ACACAAGAAA
Statistics
Matches: 133, Mismatches: 24, Indels: 22
0.74 0.13 0.12
Matches are distributed among these distances:
44 30 0.23
45 5 0.04
46 4 0.03
47 33 0.25
48 12 0.09
49 40 0.30
50 7 0.05
51 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACAGGTCTTACACTGGCTATCGATATCAAGGCCGATA
Found at i:89204439 original size:139 final size:138
Alignment explanation
Indices: 89204166--89204448 Score: 419
Period size: 139 Copynumber: 2.0 Consensus size: 138
89204156 CCTTCTATTT
* *
89204166 AATTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACGGATGAAAA
1 AATTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAA
*
89204231 ATTTAACGCCTATTAATTTTTCTAATGTGGCATATACGTGGATGCCACATCAATAATTAATTAAT
66 AATTAACGCCTATTAATTTTTCTAATGTGGCATATACGTGGATGCCACATCAATAATTAATTAA-
89204296 TTTTTTTAA
130 TTTTTTTAA
* * * *
89204305 AATTTTTACCTATTTTGGCCCTTAAACTTGCATTGTTTGTCAAA-TCACTCCAAAATAGATAAAA
1 AATTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTC-CTCCAAAACAGATAAAA
* * *
89204369 AAGATTAATGTCTATTAATTTTAT-TAATGTGGCATATACGTGGATGCCACATCAGTAATTAATT
65 AA-ATTAACGCCTATTAATTTT-TCTAATGTGGCATATACGTGGATGCCACATCAATAATTAATT
89204433 AA-TTTTTTAA
128 AATTTTTTTAA
89204443 AATTTT
1 AATTTT
89204449 AAAAATTAAA
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
138 16 0.12
139 57 0.44
140 57 0.44
141 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (138 bp):
AATTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAA
AATTAACGCCTATTAATTTTTCTAATGTGGCATATACGTGGATGCCACATCAATAATTAATTAAT
TTTTTTAA
Found at i:89204515 original size:21 final size:22
Alignment explanation
Indices: 89204465--89204518 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
89204455 TAAAAAAATT
*
89204465 TATAAAAAGTATTTTTTAAAAAG
1 TATAAAAA-TATTATTTAAAAAG
*
89204488 -ATTAAAAT-TTATTTAAAAAG
1 TATAAAAATATTATTTAAAAAG
89204508 TATAAAAATAT
1 TATAAAAATAT
89204519 AAAAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 11 0.42
21 8 0.31
22 7 0.27
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (22 bp):
TATAAAAATATTATTTAAAAAG
Found at i:89215700 original size:22 final size:22
Alignment explanation
Indices: 89215656--89215713 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
89215646 CAAAAGAATG
*
89215656 AAATAAATAACATAAAACCATTTA
1 AAATAAAT-A-ATAAAACAATTTA
* *
89215680 AAATAAATAATGAAACAATTTT
1 AAATAAATAATAAAACAATTTA
*
89215702 AAATAAGTAATA
1 AAATAAATAATA
89215714 CATAAAAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 20 0.69
23 1 0.03
24 8 0.28
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (22 bp):
AAATAAATAATAAAACAATTTA
Found at i:89215923 original size:28 final size:27
Alignment explanation
Indices: 89215875--89215938 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
89215865 AGAAAGTCTA
* *
89215875 AAATAAATAATACGTGAAAAATAAATTT
1 AAATAAATAATACATGAAAAA-AAATAT
*
89215903 AAATAAATAATATAT-ATAAAAAAATAT
1 AAATAAATAATACATGA-AAAAAAATAT
*
89215930 AAAAAAATA
1 AAATAAATA
89215939 GTTTAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (27 bp):
AAATAAATAATACATGAAAAAAAATAT
Found at i:89217099 original size:9 final size:9
Alignment explanation
Indices: 89217013--89217097 Score: 125
Period size: 9 Copynumber: 9.4 Consensus size: 9
89217003 TTTTGTTAAA
*
89217013 AATTAACCA
1 AATTAACCG
*
89217022 AATTACCCG
1 AATTAACCG
*
89217031 GATTAACCG
1 AATTAACCG
89217040 AATTAACCG
1 AATTAACCG
89217049 AATTAACCG
1 AATTAACCG
*
89217058 AATTGACCG
1 AATTAACCG
89217067 AATTAACCG
1 AATTAACCG
89217076 AATTAACCG
1 AATTAACCG
*
89217085 AATTGACCG
1 AATTAACCG
89217094 AATT
1 AATT
89217098 GAATCACTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:89217132 original size:17 final size:17
Alignment explanation
Indices: 89217110--89217170 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
89217100 ATCACTACAC
89217110 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
** * *
89217127 TACATAAGTCTTTGAATTAC
1 TACATAA---TTAAAAATAT
89217147 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
89217164 TACATAA
1 TACATAA
89217171 GTCTTTGAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:89217150 original size:37 final size:37
Alignment explanation
Indices: 89217108--89217229 Score: 185
Period size: 37 Copynumber: 3.3 Consensus size: 37
89217098 GAATCACTAC
89217108 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
1 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
*
89217145 ACTACATAATTAAAAATATTACATAAGTCTTTGAATC
1 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
* *
89217182 ACTAAATAATTAAAAACATTACATAAGTC-TTGAAATT
1 ACTACATAATTAAAAATATTACATAAGTCTTTG-AATT
89217219 AAC-ACATAATT
1 -ACTACATAATT
89217230 GAAATGTCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
36 3 0.04
37 73 0.94
38 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.34
Consensus pattern (37 bp):
ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
Found at i:89219674 original size:18 final size:20
Alignment explanation
Indices: 89219644--89219688 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
89219634 CTGCAAGAAA
89219644 AAAAT-TATATAATAA-ATT
1 AAAATATATATAATAATATT
89219662 AAAATATAT-TAATAATATT
1 AAAATATATATAATAATATT
89219681 AAACATAT
1 AAA-ATAT
89219689 TTTTATACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.46
19 9 0.38
20 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:89219876 original size:4 final size:4
Alignment explanation
Indices: 89219862--89219897 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
89219852 CCTATTACTT
* *
89219862 TATA CATA TATA TATA TATA TATA TATA TATG TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA
89219898 ACCATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (4 bp):
TATA
Found at i:89219876 original size:6 final size:6
Alignment explanation
Indices: 89219862--89219897 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
89219852 CCTATTACTT
* *
89219862 TATACA TATATA TATATA TATATA TATATA TGTATA
1 TATATA TATATA TATATA TATATA TATATA TATATA
89219898 ACCATTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (6 bp):
TATATA
Found at i:89220331 original size:23 final size:22
Alignment explanation
Indices: 89220275--89220331 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
89220265 TTTGTTTAAG
89220275 ATTTAATAAAAATAATCTAAAAT
1 ATTTAA-AAAAATAATCTAAAAT
* *
89220298 ATTATATAAAAAATAATTTTTAAAT
1 ATT-TA-AAAAAATAA-TCTAAAAT
89220323 ATTTAAAAA
1 ATTTAAAAA
89220332 TTTGATTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 7 0.24
24 12 0.41
25 10 0.34
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATTTAAAAAAATAATCTAAAAT
Found at i:89224329 original size:9 final size:9
Alignment explanation
Indices: 89224298--89224340 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
89224288 ACTATGATAC
89224298 TTTTGAAGG
1 TTTTGAAGG
* *
89224307 TTTTGGGAGA
1 TTTT-GAAGG
89224317 TTTTGAAGG
1 TTTTGAAGG
89224326 TTTTGAAGG
1 TTTTGAAGG
89224335 TTTTGA
1 TTTTGA
89224341 GAGATTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (9 bp):
TTTTGAAGG
Found at i:89224541 original size:13 final size:13
Alignment explanation
Indices: 89224509--89224542 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
89224499 ATTTGTATTT
* *
89224509 GGTTGGATAATTA
1 GGTTGGGTAAATA
89224522 GGTTGGGTAAATA
1 GGTTGGGTAAATA
89224535 GGTTGGGT
1 GGTTGGGT
89224543 TGGGTTGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (13 bp):
GGTTGGGTAAATA
Found at i:89225775 original size:44 final size:44
Alignment explanation
Indices: 89225709--89225957 Score: 191
Period size: 44 Copynumber: 5.7 Consensus size: 44
89225699 TTGATCCACT
* *
89225709 CCACTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCC
1 CCACTGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCC
* * * * ** *
89225753 CCACTGCAACTTTAGGGGGATAAGGTTTG-AGGCTTCAATTTGCT
1 CCACTGCAACTTTAGGGAGATAAGATTCGTA-ACTTCAACCTGCC
* * * * *
89225797 CCACTTG-AACTTCAGGGAGATAAGATTTC-TATCTTCGATCTGCT
1 CCAC-TGCAACTTTAGGGAGATAAGA-TTCGTAACTTCAACCTGCC
*
89225841 CCACTGCAACTTTAGGGAGATAAGACTT-GTAACTTCGACCTGCC
1 CCACTGCAACTTTAGGGAGATAAGA-TTCGTAACTTCAACCTGCC
* * * ** ** * * *
89225885 CCACTACAACTTCAAGGAGATAAGATTAATGGCTTTAATCTGCT
1 CCACTGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCC
* *
89225929 CCACTGCAACATCAGGGAGATAAGATTCG
1 CCACTGCAACTTTAGGGAGATAAGATTCG
89225958 CCATGATAGA
Statistics
Matches: 162, Mismatches: 36, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
43 5 0.03
44 152 0.94
45 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCC
Found at i:89225889 original size:88 final size:88
Alignment explanation
Indices: 89225741--89225953 Score: 221
Period size: 88 Copynumber: 2.4 Consensus size: 88
89225731 AGAATCGTAA
* * * ** * ** * **
89225741 CTTCAACCTGCCCCACTGCAACTTTAGGGGGATAAGGTTTGAGGCTTCAATTTGCTCCACTTGAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGAGACTTCAACCTGCCCCACTACAA
* ** *
89225806 CTTCAGGGAGATAAGATTTCTAT
66 CTTCAAGGAGATAAGATTAATAG
* *
89225829 CTTCGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA-ACTTCGACCTGCCCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG-AGACTTCAACCTGCCCCACTACA
*
89225893 ACTTCAAGGAGATAAGATTAATGG
65 ACTTCAAGGAGATAAGATTAATAG
* * *
89225917 CTTTAATCTGCTCCACTGCAACATCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
89225954 TTCGCCATGA
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
88 101 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGAGACTTCAACCTGCCCCACTACAA
CTTCAAGGAGATAAGATTAATAG
Found at i:89225944 original size:132 final size:132
Alignment explanation
Indices: 89225707--89225955 Score: 349
Period size: 132 Copynumber: 1.9 Consensus size: 132
89225697 GTTTGATCCA
* * * *
89225707 CTCCACTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTTAGGGGG
1 CTCCACTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTCAAGGAG
* * * *
89225772 ATAAGGTTTGAGGCTTCAATTTGCTCCACTTGAACTTCAGGGAGATAAGATTTCTATCTTCGATC
66 ATAAGGATTAAGGCTTCAATCTGCTCCACTTGAACATCAGGGAGATAAGATTTCTATCTTCGATC
89225837 TG
131 TG
* * * *
89225839 CTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCGACCTGCCCCACTACAACTTCAAGGAG
1 CTCCACTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTCAAGGAG
*
89225904 ATAA-GATTAATGGCTTTAATCTGCTCCAC-TGCAACATCAGGGAGATAAGATT
66 ATAAGGATTAA-GGCTTCAATCTGCTCCACTTG-AACATCAGGGAGATAAGATT
89225956 CGCCATGATA
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
131 6 0.06
132 96 0.94
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (132 bp):
CTCCACTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTCAAGGAG
ATAAGGATTAAGGCTTCAATCTGCTCCACTTGAACATCAGGGAGATAAGATTTCTATCTTCGATC
TG
Found at i:89226053 original size:21 final size:21
Alignment explanation
Indices: 89226024--89226064 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
89226014 GTAGCTTTAA
*
89226024 TCTGTTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
89226045 TCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCA
89226065 AGGAGATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:89226259 original size:44 final size:44
Alignment explanation
Indices: 89226045--89229198 Score: 404
Period size: 44 Copynumber: 69.8 Consensus size: 44
89226035 GCAACTTCAG
* * * * *
89226045 TCTGCTCCACTGCAACTTCA-AGGAGATAAGACTTGTAACTTAAA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * * * *
89226089 CCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * *
89226133 TCTGCTCCACTGTAACTTTA-AGGAGATAAAATTCGTCATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGA-T--T--TA-TAGCTTTAA
* * *
89226183 TCCGAC-CTGCTGCAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * * * *
89226227 TCTGCTCTACTGTAACTTCAGAGAGATAGGATTCACTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* * * * * * *
89226272 TCTGTTCTGCTGTAACTTCAG-GAAGATACGACTTGTA-ATTTCAA
1 TCTGCTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTT-AA
* * * * * **
89226316 -CTTGCTCCACTGTAACTTTAGAGAGATAAG-GTTAGTGGCTTCGA
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * *
89226360 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
89226410 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * * ** *
89226454 TCTGCTCTGCTGTAACTTCAGAGATATAAGATTCGCTA-TTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTTAA
* ** * * * *
89226498 GTCTTCTCCGCTGCAACTTCA-AGGAGATACGACTTGTAACTTTAA
1 -TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * *
89226543 CCTGCTAC-ACTGCAACTTTAGAGAGATAAG-GTTAGTGGCTTTAA
1 TCTGCT-CTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * *
89226587 TATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGGTAGGTTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-TT-T-A---TAGCTTTAA
* *
89226637 TTTGAC-CTACTGCAACTTTAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** * *
89226681 TTTGCTCTACTGCAACTTCAGAGAGATAGGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* * ** * * * * * * *
89226726 TCAGTTCCGCTGTAACTTCAGGGAGATACGACTTGTAACTTAAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * **
89226770 CCTGCTCCACTGCAACTTTAGGGAGATAAG-GTTAGT-GTCTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAG-CTTTAA
* * * * * *
89226814 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
89226864 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * * ** * *
89226908 TCTGCTCTACTACAACTTCAGTGAAATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** * * * * * *
89226953 TC-GTCTCCGCTACAACTTCAG-GAAGATACGACTTGTAACTTCAA
1 TCTG-CTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * * * *
89226997 -CGTGTTCCACTGCAACTTGAGGGAGATAAG-GTTAGTGGCTTTAA
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * ** *
89227041 TATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAAATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * **
89227091 TCCGAC-ATGCTGCAACTTCAGAG-GTATAGGATTTATATTTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** ** *
89227135 TTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTTAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTTAA
** * * * * * *
89227180 TCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* ** * * * * * *
89227224 CCTATTCCACTACAACTTTAGGGAGATAAG-GTTAGTGGCTTCT-A
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * * * *
89227268 CCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
*
89227318 TCTGAC-CTGCTGCAAC-T--------T--GATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
** ** * *
89227351 TCTGCTCTACTATAACTTCAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* * * * * * * *
89227396 TC-G-TCTTCGTTGTAACTTTAG-GAAGATACGAGTTGTAACTTCAA
1 TCTGCTCTAC--TGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * *
89227440 -CGTGCTCCACTGCAACTTCAGGGAGATAAG-GTTAGTAGCTTTAA
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * * *
89227484 TATGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATGGTAGATTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * *
89227534 TCCGAC-CTGCTGTAACTTCAGAG-GTATAGGATTTATAGCTATAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** *
89227578 TTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTA-TTTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* ** * * * * *
89227623 TCTACTCCGCTGCAACTTCAGAGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * *
89227667 CCTGCTCTACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * * *
89227711 TTTGTTCCACTGCAACTTCAGGGAGATAAG-GTTAGT-GGTTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* * * * * *
89227755 TCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCCATGATAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * *
89227805 TCCGAC-CTGCTACAACTTCAGAG-TATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * *
89227848 TCTGCTCTACTGCAACTTCAGATAGATAGGATTCACTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* * * * * * * **
89227893 TCTGATCCACCGCAACTTTAGGGAGATAAG-GTTAGTGGCTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * **
89227937 TCTGCT-TCACTGCAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGG
1 TCTGCTCT-ACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * *
89227987 TCTGAC-CTGCTACAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** *
89228031 TTTGCTCTATTGCAACTTCAGAGAGATAAGATTCGCTA-CTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** * * * * * *
89228076 T-TGTCTCCGCTGTAACTTTAG-GAAGATACGACTTGTAACTTTAA
1 TCTG-CTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * *
89228120 -CGTGCTCCACTGCAACTTCAG-GAAGATAAG-GTTAGTGGCTTCAA
1 TC-TGCTCTACTGCAACTTCAGAG-AGATAAGATTTA-TAGCTTTAA
* * * * * * *
89228164 TATGTTCCATTGCAACTTCAGGGAGATAAGATTCGCAATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----TA-TAGCTTTAA
** * *
89228214 TCCAAC-CTACTGTAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 T-CTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * *
89228258 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
** ** * * * * * *
89228303 TCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * *
89228347 -CTTGCTCCACTGCAACTTTAGGGAGATACG-GTTAGTGGCTTCT-A
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * * *
89228391 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
89228441 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** * *
89228485 TCTACTCTGCTGCAACTTCAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* ** * * * * *
89228530 TCTTCTCCGCTGCAACTTCA-AGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * * * * **
89228574 CCTGCTAC-ACTACAACTTTAGGGAGATAAG-GTTAGTGGCTTCGA
1 TCTGCT-CTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * *
89228618 TCTGCTCCACTGTAACTTTA-AGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATT-----T-ATAGCTTTAA
*
89228668 T-TCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCT-G-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** * *
89228712 TCTGCTCTACTGCAACTTCAGAGAGATAGGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* * * * * *
89228757 T-TG-TCTTCGCTGCAACTTTAG-GAAGATACGACTTGTAACTTTAA
1 TCTGCTC-T-ACTGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * *
89228801 -CGTGCTCCACTGCAACTTCAG-GAAGATAAG-GTTAGTGGCTTCAA
1 TC-TGCTCTACTGCAACTTCAGAG-AGATAAGATTTA-TAGCTTTAA
* * * * * * *
89228845 TATGCTCCATTGCAACTTTAGGGAGATAAGATTCGTCATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-T--T--TA-TAGCTTTAA
** * * *
89228895 TCCAAC-CTGCTGTAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 T-CTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
** * *
89228939 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** ** * * * * * *
89228984 TCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * *
89229028 -CTTGCTCCACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTCT-A
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * * *
89229072 TCTGCTCTACTACAACTTTAGTGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
89229122 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * *
89229166 TCTGCTCTGCTGTAACTTTAGAGAGATAAGATT
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT
89229199 CGCTATTTTC
Statistics
Matches: 2235, Mismatches: 605, Indels: 540
0.66 0.18 0.16
Matches are distributed among these distances:
32 1 0.00
33 18 0.01
34 2 0.00
39 4 0.00
41 1 0.00
42 2 0.00
43 81 0.04
44 1237 0.55
45 444 0.20
46 6 0.00
47 5 0.00
48 3 0.00
49 29 0.01
50 381 0.17
51 21 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
Found at i:89226435 original size:227 final size:227
Alignment explanation
Indices: 89226040--89229351 Score: 4241
Period size: 227 Copynumber: 14.6 Consensus size: 227
89226030 CCACTGCAAC
* * * *
89226040 TTCAGTCTGCTCCACTGCAACTTCAAGG-AGATAAGACTTGTAACTTAAACCTGCTCCACTGCAA
1 TTCAGTCTGTTCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * * * * *
89226104 CTTCAGGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTGTAACTTTAAGGAGATAAAATTCGT
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* *
89226169 CATAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
* * *
89226234 TACTGTAACTTCAGAGAGATAGGATTCACTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * * *
89226267 TTCAGTCTGTTCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACTTGCTCCACTGTAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* *
89226332 TTTAGAGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
89226397 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* * *
89226462 GCTGTAACTTCAGAGATATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * *
89226494 TTAAGTCT-TCTCCGCTGCAACTTCAAGG-AGATACGACTTGTAACTTTAACCTGCTACACTGCA
1 TTCAGTCTGT-TCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * * *
89226557 ACTTTAGAGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
* * ** * * *
89226622 TCATGGTAGGTTTGATTTGACCTACTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATTTGCT
129 CCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
*
89226687 CTACTGCAACTTCAGAGAGATAGGATTCGCTATT
194 CTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
89226721 TTCAGTCAGTTCCGCTGTAACTTCAGGGAGATACGACTTGTAACTTAAACCTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * *
89226786 TTTAGGGAGATAAGGTTAGTGTCTTCGATCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
89226851 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* * *
89226916 ACTACAACTTCAGTGAAATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * *
89226948 TTCAGTC-GTCTCCGCTACAACTTCAGGAAGATACGACTTGTAACTTCAACGTGTTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * *
89227012 CTTGAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * ** *
89227077 CATGGTAAATTTGATCCGACATGCTGCAACTTCAGAGGTATAGGATTTATATTTTTAATTTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
89227142 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * ** *
89227175 TTTAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCACTACAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * *
89227240 TTTAGGGAGATAAGGTTAGTGGCTTCTACCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
89227305 ATGGTAGATTTGATCTGACCTGCTGCAA---C-----T-T--GATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
**
89227359 ACTATAACTTCAGAGAGATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * * * *
89227391 TTCAGTC-GTCTTCGTTGTAACTTTAGGAAGATACGAGTTGTAACTTCAACGTGCTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * *
89227455 CTTCAGGGAGATAAGGTTAGTAGCTTTAATATGCTCCACTGCAACTTTAGGGAGATAAGATTCGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * *
89227520 CATGGTAGATTTCATCCGACCTGCTGTAACTTCAGAGGTATAGGATTTATAGCTATAATTTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
89227585 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** *
89227618 TTCAATCTACTCCGCTGCAACTTCA-GAGAGATACGACTTGTAACTTCAACCTGCTCTACTGCAA
1 TTCAGTCTGTTCCGCTGCAACTTCAGGA-AGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
** * * * *
89227682 CTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTAG-
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * * * * *
89227746 --TGGT---TTCGATCTGTTCC-ACTACAACTTCAG-GGAGATAAGATTCGCCATGATAGATTTG
130 CATGGTAGATTTGATCCG-ACCTGCTGCAACTTCAGAGG-TATAAGATT-----T-ATAGCTTTA
* * * * * ** *
89227804 ATCCGAC-CTGCTACAACTTCAGAG-TATAGGATT-TATAGCT
187 ATCTG-CTCTACTGCAACTTCAGAGAGATAAGATTCGCTA-TT
* * ** * * ** ** * *
89227844 TT-AATCTGCTCTACTGCAACTTCA-GATAGATAGGA-TTCACTATTTTCAGTCTGATCCACCGC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGA-AGATACGACTT--GTAACTTCAACCTGCTCCACTGC
* *
89227906 AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAACTTCAGGGAGATAAGATTC
63 AACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC
* * * * * *
89227971 ACCATGGTAGATTTGGTCTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATTTGC
128 GCCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGC
* *
89228036 TCTATTGCAACTTCAGAGAGATAAGATTCGCTACT
193 TCTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
89228071 TTCAGT-TGTCTCCGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * *
89228135 CTTCAGGAAGATAAGGTTAGTGGCTTCAATATGTTCCATTGCAACTTCAGGGAGATAAGATTCGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * * *
89228200 AATAGTAGATTTGATCCAACCTACTGTAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
*
89228265 TACTGCAACTTCAGAGAGATAAGATTCACTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** * *
89228298 TTCAGTCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * *
89228363 TTTAGGGAGATACGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
89228428 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTACTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
*
89228493 GCTGCAACTTCAGAGAGATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* *
89228525 TTCAGTCT-TCTCCGCTGCAACTTCAAGG-AGATACGACTTGTAACTTCAACCTGCTACACTACA
1 TTCAGTCTGT-TCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * * *
89228588 ACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGTAACTTTAAGGAGATAAGATTCG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
*
89228653 CCATGGTAGATTTGATTCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
129 CCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
*
89228718 CTACTGCAACTTCAGAGAGATAGGATTCGCTATT
194 CTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
89228752 TTCAGT-TGTCTTCGCTGCAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * * *
89228816 CTTCAGGAAGATAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTTAGGGAGATAAGATTCGT
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * *
89228881 CATAGTAGATTTGATCCAACCTGCTGTAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
89228946 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** * *
89228979 TTCAGTCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * * *
89229044 TTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCTACTACAACTTTAGTGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
89229109 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* * *
89229174 GCTGTAACTTTAGAGAGATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
89229206 TTCAGT-TTTCTCCGCTACAACTTCAAGG-AGATACGACTTGTAACTTTAACCTGCTACACTGCA
1 TTCAGTCTGT-TCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * * * *
89229269 ACTTTAGGGAAATAAGGTTAGTGGCTTCGATCTGCTCCACTGTAACTTTAAGGAGATAAGATTCG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
89229334 CCATGGTAGATTTGATCC
129 CCATGGTAGATTTGATCC
89229352 CTTGCTACCT
Statistics
Matches: 2681, Mismatches: 348, Indels: 112
0.85 0.11 0.04
Matches are distributed among these distances:
215 1 0.00
216 183 0.07
218 1 0.00
219 2 0.00
220 2 0.00
221 23 0.01
222 2 0.00
224 8 0.00
225 32 0.01
226 125 0.05
227 2226 0.83
228 38 0.01
229 8 0.00
231 2 0.00
232 26 0.01
233 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (227 bp):
TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
ACTGCAACTTCAGAGAGATAAGATTCGCTATT
Found at i:89227918 original size:182 final size:183
Alignment explanation
Indices: 89227668--89228076 Score: 574
Period size: 182 Copynumber: 2.2 Consensus size: 183
89227658 TAACTTCAAC
* * * * * * * * *
89227668 CTGCTCTACTGCAACTTTAGGGAGATAAGGTT-AGTGGCTTTGA-TTTGTTCCACTGCAACTTCA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACT-ACTTTCAGTCTGATCCACCGCAACTTCA
* *
89227731 GGGAGATAAGGTTAGTGGTTTCGATCTG-TTCCACTACAACTTCAGGGAGATAAGATTCGCCATG
65 GGGAGATAAGGTTAGTGGCTTCGATCTGCTT-CACTACAACTTCAGGGAGATAAGATTCACCATG
89227795 ATAGATTTGATCCGACCTGCTACAACTTCAGA-GTATAGGATTTATAGCTTTAAT
129 ATAGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAAT
* * * *
89227849 CTGCTCTACTGCAACTTCAGATAGATAGGATTCACTATTTTCAGTCTGATCCACCGCAACTTTAG
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTCTGATCCACCGCAACTTCAG
* *
89227914 GGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAACTTCAGGGAGATAAGATTCACCATGGT
66 GGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTACAACTTCAGGGAGATAAGATTCACCATGAT
* *
89227979 AGATTTGGTCTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAAT
131 AGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAAT
* * *
89228032 TTGCTCTATTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGT
89228077 TGTCTCCGCT
Statistics
Matches: 199, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
181 31 0.16
182 105 0.53
183 63 0.32
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (183 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTCTGATCCACCGCAACTTCAG
GGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTACAACTTCAGGGAGATAAGATTCACCATGAT
AGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAAT
Found at i:89228133 original size:183 final size:182
Alignment explanation
Indices: 89227668--89228149 Score: 515
Period size: 183 Copynumber: 2.6 Consensus size: 182
89227658 TAACTTCAAC
* * * * * * * * * *
89227668 CTGCTCTACTGCAACTTTAGGGAGATAAGGTT-AGTGGCTTTGA-TTTGTTCCACTGCAACTTCA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACT-ACTTTCAGTCTGATCCACCGCAACTTTA
* * *** * * * *
89227731 GGGAGATAAGGTTAGTGGTTTCGATCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCCATGA
65 GGAAGATAAGCTTAGTAACTTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGA
89227796 TAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAAT
130 TAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAAT
* * *
89227849 CTGCTCTACTGCAACTTCAGATAGATAGGATTCACTATTTTCAGTCTGATCCACCGCAACTTTAG
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTCTGATCCACCGCAACTTTAG
* * ** * * *
89227914 GGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAACTTCAGGGAGATAAGATTCACCATGGT
66 GAAGATAAGCTTAGTAACTTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGAT
* *
89227979 AGATTTGGTCTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAAT
131 AGATTTGATCCGACCTGCTACAACTTCAGA-GTATAGGATTTATAGCTTTAAT
* * * * * * *
89228032 TTGCTCTATTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGT-TGTCTCCGCTGTAACTTTA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTCTG-ATCCACCGCAACTTTA
* * *
89228096 GGAAGATACGACTT-GTAACTT-TAACGTGCTCCACTGCAACTTCAGGAAGATAAG
65 GGAAGATAAG-CTTAGTAACTTCGAAC-TGCTCCACTGCAACTTCAGGGAGATAAG
89228150 GTTAGTGGCT
Statistics
Matches: 255, Mismatches: 40, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
181 31 0.12
182 110 0.43
183 112 0.44
184 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (182 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTCTGATCCACCGCAACTTTAG
GAAGATAAGCTTAGTAACTTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGAT
AGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAAT
Found at i:89236532 original size:20 final size:21
Alignment explanation
Indices: 89236490--89236561 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 21
89236480 CACATGTCAT
*
89236490 GACACT-AGCTTCGAATGTCGC
1 GACACTGAGCTT-GGATGTCGC
*
89236511 GACACTGA-CTTGGATGTTGC
1 GACACTGAGCTTGGATGTCGC
* *
89236531 GACACTAAAGGTTGGATGTCGC
1 GACACT-GAGCTTGGATGTCGC
89236553 GACACTGAG
1 GACACTGAG
89236562 ACAAATTATC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.31
21 12 0.29
22 17 0.40
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (21 bp):
GACACTGAGCTTGGATGTCGC
Found at i:89241363 original size:10 final size:9
Alignment explanation
Indices: 89241335--89241388 Score: 56
Period size: 10 Copynumber: 5.8 Consensus size: 9
89241325 GGTTGCTAAG
89241335 TTATTT-AT
1 TTATTTAAT
89241343 TTATTTAAT
1 TTATTTAAT
*
89241352 TTGATTTGAT
1 TT-ATTTAAT
89241362 TTCATTTAATT
1 TT-ATTTAA-T
89241373 TTATTTAAT
1 TTATTTAAT
*
89241382 TTTTTTA
1 TTATTTA
89241389 TCTTAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
8 6 0.15
9 11 0.28
10 19 0.49
11 3 0.08
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (9 bp):
TTATTTAAT
Found at i:89241995 original size:14 final size:16
Alignment explanation
Indices: 89241966--89242000 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
89241956 AATTAGTCGG
89241966 TAAAAGTAATAATAAA
1 TAAAAGTAATAATAAA
89241982 TAAAA-TAA-AATAAA
1 TAAAAGTAATAATAAA
89241996 TAAAA
1 TAAAA
89242001 AGAATCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 3 0.16
16 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
TAAAAGTAATAATAAA
Found at i:89242850 original size:2 final size:2
Alignment explanation
Indices: 89242843--89242874 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
89242833 TCAGGTGATC
89242843 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
89242875 GACATGAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:89254406 original size:26 final size:26
Alignment explanation
Indices: 89254377--89254483 Score: 205
Period size: 26 Copynumber: 4.1 Consensus size: 26
89254367 TGATACAAAT
89254377 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
89254403 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89254429 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89254455 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89254481 TGA
1 TGA
89254484 AATTTTATTA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:89260275 original size:24 final size:24
Alignment explanation
Indices: 89260246--89260297 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
89260236 TTAAACTATT
*
89260246 ATATTTAATAATTATTATGTTAAA
1 ATATTTAATAATAATTATGTTAAA
89260270 ATATTTAATAATAATTATGTTAAA
1 ATATTTAATAATAATTATGTTAAA
89260294 ATAT
1 ATAT
89260298 GGTTAAACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
ATATTTAATAATAATTATGTTAAA
Found at i:89260546 original size:16 final size:16
Alignment explanation
Indices: 89260525--89260561 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
89260515 ATTACTTATA
*
89260525 ACAGCTCTATTCCATT
1 ACAGCTCTATTCAATT
89260541 ACAGCTCTATTCAATT
1 ACAGCTCTATTCAATT
89260557 ACAGC
1 ACAGC
89260562 CTTATTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (16 bp):
ACAGCTCTATTCAATT
Found at i:89260567 original size:16 final size:17
Alignment explanation
Indices: 89260525--89260578 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 17
89260515 ATTACTTATA
*
89260525 ACAG-CTCTATTCCATT
1 ACAGCCTCTATTCAATT
89260541 ACAG-CTCTATTCAATT
1 ACAGCCTCTATTCAATT
*
89260557 ACAGCCT-TATTCTATT
1 ACAGCCTCTATTCAATT
*
89260573 ATAGCC
1 ACAGCC
89260579 AACCAAACGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
16 32 0.94
17 2 0.06
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.37
Consensus pattern (17 bp):
ACAGCCTCTATTCAATT
Found at i:89262823 original size:25 final size:27
Alignment explanation
Indices: 89262786--89262839 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
89262776 TCAAACATGC
89262786 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
89262812 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
89262838 AT
1 AT
89262840 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:89262847 original size:26 final size:27
Alignment explanation
Indices: 89262803--89262878 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
89262793 TCAATTTAAC
* * *
89262803 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTCCAA
*
89262829 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTACAGTAATTTTCCA-A
* *
89262857 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
89262879 AGCTGCTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAA
Found at i:89264286 original size:26 final size:26
Alignment explanation
Indices: 89264256--89264363 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
89264246 TGAAATTCCC
89264256 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
89264282 ATCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
89264308 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
89264334 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
89264360 ATCA
1 ATCA
89264364 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:89267468 original size:15 final size:15
Alignment explanation
Indices: 89267448--89267477 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89267438 CATTTTATTT
*
89267448 ATATTAGGATAATTA
1 ATATTAAGATAATTA
89267463 ATATTAAGATAATTA
1 ATATTAAGATAATTA
89267478 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:89267505 original size:27 final size:26
Alignment explanation
Indices: 89267444--89267506 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
89267434 ACTCCATTTT
89267444 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
89267471 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
89267499 ATTTTATT
1 ATTTTATT
89267507 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:89268640 original size:97 final size:97
Alignment explanation
Indices: 89268523--89268724 Score: 359
Period size: 97 Copynumber: 2.1 Consensus size: 97
89268513 GTTACCGAGG
* *
89268523 ATCGATAACGTACTAATCTTGTTTTTTGTTTTTTATGACCAGATTTGCTTTAGGAACTCTTACGT
1 ATCG-TAACGTACTAATCTTGTTTTTTGTTTTTTATGACCAGATCTGCTTCAGGAACTCTTACGT
89268588 TTGATTCAAAGATTGAAAAGACTGCGAAAGCTA
65 TTGATTCAAAGATTGAAAAGACTGCGAAAGCTA
*
89268621 ATTGTAACGTACTAATCTTGTTTTTTGTTTTTTATGACCAGATCTGCTTCAGGAACTCTTACGTT
1 ATCGTAACGTACTAATCTTGTTTTTTGTTTTTTATGACCAGATCTGCTTCAGGAACTCTTACGTT
*
89268686 TGATTCAGAGATTGAAAAGACTGCGAAAGCTA
66 TGATTCAAAGATTGAAAAGACTGCGAAAGCTA
89268718 ATCGTAA
1 ATCGTAA
89268725 GGAAACAAAG
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 96 0.97
98 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (97 bp):
ATCGTAACGTACTAATCTTGTTTTTTGTTTTTTATGACCAGATCTGCTTCAGGAACTCTTACGTT
TGATTCAAAGATTGAAAAGACTGCGAAAGCTA
Found at i:89271348 original size:6 final size:6
Alignment explanation
Indices: 89271337--89271392 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
89271327 AGGCAACCCA
89271337 ATTTTT ATTTTT ATTTTT ATTTTT A--TTT A-TTTT ATCTTATT A-TTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TT-TT ATTTTT
89271383 ATTATTT ATT
1 ATT-TTT ATT
89271393 ATTTTCAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
4 4 0.09
5 7 0.16
6 22 0.50
7 8 0.18
8 3 0.07
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:89271382 original size:28 final size:27
Alignment explanation
Indices: 89271339--89271397 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
89271329 GCAACCCAAT
89271339 TTTTATTTTTATTTTTATT-TTTATTTA
1 TTTTATTTTTATTTTTATTATTTA-TTA
89271366 TTTTATCTTATTA-TTTTATTATTTATTA
1 TTTTAT-TT-TTATTTTTATTATTTATTA
89271394 TTTT
1 TTTT
89271398 CAGAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 6 0.21
28 16 0.55
29 7 0.24
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTATTTTTATTTTTATTATTTATTA
Found at i:89272421 original size:9 final size:9
Alignment explanation
Indices: 89272407--89272436 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
89272397 AAATTAAAGT
89272407 AAAAGAAAA
1 AAAAGAAAA
89272416 AAAAGAAAA
1 AAAAGAAAA
89272425 AAAGAGAAAA
1 AAA-AGAAAA
89272435 AA
1 AA
89272437 CAATAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:89272973 original size:15 final size:15
Alignment explanation
Indices: 89272953--89272982 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89272943 TATTTTATTT
*
89272953 ATATTAGGATAATTA
1 ATATTAAGATAATTA
89272968 ATATTAAGATAATTA
1 ATATTAAGATAATTA
89272983 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:89273010 original size:27 final size:26
Alignment explanation
Indices: 89272949--89273011 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
89272939 ACTCTATTTT
89272949 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
89272976 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
89273004 ATTTTATT
1 ATTTTATT
89273012 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:89273029 original size:10 final size:10
Alignment explanation
Indices: 89273006--89273053 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
89272996 ATTTTAGGAT
89273006 TTTAT-TTTA
1 TTTATCTTTA
*
89273015 ATTATCTTTA
1 TTTATCTTTA
89273025 TTTATCTTTA
1 TTTATCTTTA
** *
89273035 TTTAAATGTA
1 TTTATCTTTA
89273045 TTTATCTTT
1 TTTATCTTT
89273054 TTAGAATTCA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 4 0.13
10 26 0.87
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:89273781 original size:18 final size:19
Alignment explanation
Indices: 89273753--89273795 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
89273743 ATTTTTCCTC
89273753 ATTTCAATTTCTGC-AATTT-
1 ATTT-AATTTC-GCAAATTTA
89273772 ATTTAATTTCGCAAATTTA
1 ATTTAATTTCGCAAATTTA
89273791 ATTTA
1 ATTTA
89273796 CTTTAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 9 0.41
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTTAATTTCGCAAATTTA
Found at i:89277949 original size:21 final size:20
Alignment explanation
Indices: 89277915--89277959 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
89277905 TTTTTTTCTG
* * *
89277915 TTTTCTTGTTTTTTTTATTA
1 TTTTCTTGTATTTTTAAATA
89277935 TTTTCTTGCTATTTTTAAATA
1 TTTTCTTG-TATTTTTAAATA
89277956 TTTT
1 TTTT
89277960 TCAATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTCTTGTATTTTTAAATA
Found at i:89281387 original size:3 final size:3
Alignment explanation
Indices: 89281379--89281406 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
89281369 TTTTTCTTTC
89281379 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
89281407 AGCAGCCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:89282077 original size:17 final size:18
Alignment explanation
Indices: 89282057--89282091 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
89282047 ATTTTTTTTC
89282057 CTAAATTCTATTT-TTAT
1 CTAAATTCTATTTATTAT
*
89282074 CTAAATTTTATTTATTAT
1 CTAAATTCTATTTATTAT
89282092 TATTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (18 bp):
CTAAATTCTATTTATTAT
Found at i:89289484 original size:18 final size:19
Alignment explanation
Indices: 89289427--89289484 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
89289417 TTTTTTTTAA
*
89289427 AAAAAGTA-TAAAATTTATT
1 AAAAAGTATTAAAA-TTACT
*
89289446 AAAAA-T-TTAAAAAATACT
1 AAAAAGTATT-AAAATTACT
89289464 AAAAAGTATTAAAATTA-T
1 AAAAAGTATTAAAATTACT
89289482 AAA
1 AAA
89289485 TTAAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
18 14 0.44
19 16 0.50
20 2 0.06
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAAAGTATTAAAATTACT
Found at i:89289491 original size:6 final size:6
Alignment explanation
Indices: 89289471--89289506 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
89289461 ACTAAAAAGT
89289471 ATTAAA ATTATAA ATTAAA ATTAAA ATTAAA ATTAA
1 ATTAAA ATTA-AA ATTAAA ATTAAA ATTAAA ATTAA
89289507 TTAATTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTAAA
Found at i:89289898 original size:23 final size:23
Alignment explanation
Indices: 89289872--89289918 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
89289862 TTTTATCTCA
*
89289872 ATTTTTAATAAAATAAGTTTTAT
1 ATTTTTAATAAAATAAGTTCTAT
89289895 ATTTTTAATAAAATAAGTTCTAT
1 ATTTTTAATAAAATAAGTTCTAT
89289918 A
1 A
89289919 CTTAAAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (23 bp):
ATTTTTAATAAAATAAGTTCTAT
Found at i:89295036 original size:15 final size:15
Alignment explanation
Indices: 89295016--89295045 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89295006 CCCACATCAT
89295016 CACACACACTCCAAA
1 CACACACACTCCAAA
*
89295031 CACACAGACTCCAAA
1 CACACACACTCCAAA
89295046 ATCAAGTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.43, G:0.03, T:0.07
Consensus pattern (15 bp):
CACACACACTCCAAA
Found at i:89297154 original size:10 final size:10
Alignment explanation
Indices: 89297136--89297195 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
89297126 AAATATATAC
*
89297136 ATATTAAAAT
1 ATATAAAAAT
89297146 ATATAAAAAT
1 ATATAAAAAT
*
89297156 AGA-AATAAAT
1 ATATAA-AAAT
89297166 ATATAAAAAT
1 ATATAAAAAT
89297176 -TCATAAAAAT
1 AT-ATAAAAAT
*
89297186 GTATAGAAAA
1 ATATA-AAAA
89297196 AACATATAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
9 3 0.07
10 32 0.76
11 7 0.17
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:89297616 original size:29 final size:28
Alignment explanation
Indices: 89297537--89297610 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 28
89297527 GTCAAAAGTG
89297537 TTTTTTATATTTAAATATTTAATATTATAA
1 TTTTTTAT-TTTAAATA-TTAATATTATAA
89297567 TTTTTTAAGTTTTAAAT-TTAA-ATT-TAA
1 TTTTTT-A-TTTTAAATATTAATATTATAA
89297594 TCTTTTTATTTTAAATA
1 T-TTTTTATTTTAAATA
89297611 ACTTAATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
26 8 0.20
27 5 0.12
28 8 0.20
29 4 0.10
30 6 0.15
31 8 0.20
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTTTTATTTTAAATATTAATATTATAA
Found at i:89300001 original size:19 final size:19
Alignment explanation
Indices: 89299956--89300027 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
89299946 TTACAAAAAG
*
89299956 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATTATTTT
89299975 CAAAAATTCAAAATTATTTT
1 -AAAAATTCAAAATTATTTT
* *
89299995 TAAAATTTAAAA-TATTTAT
1 AAAAATTCAAAATTATTT-T
* *
89300014 GAAAATTCTAAATT
1 AAAAATTCAAAATT
89300028 TTATATATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.11
19 20 0.45
20 19 0.43
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (19 bp):
AAAAATTCAAAATTATTTT
Found at i:89300049 original size:25 final size:26
Alignment explanation
Indices: 89299997--89300050 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
89299987 ATTATTTTTA
* *
89299997 AAATTTAAAATATTTATGAAAATTCT
1 AAATTTAAAATATTTATAAAAAATCT
* *
89300023 AAATTTTATATATTTA-AAAAAATCT
1 AAATTTAAAATATTTATAAAAAATCT
89300048 AAA
1 AAA
89300051 AAAATTCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATTTAAAATATTTATAAAAAATCT
Found at i:89306015 original size:25 final size:28
Alignment explanation
Indices: 89305963--89306016 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
89305953 TTATCACTAT
* *
89305963 TATGTGTTGAATGATTGATTTTGCATAA
1 TATGTGTTGAATGATTGATTATGAATAA
89305991 TATG-GTTGAAT-A-TGATTATGAATAA
1 TATGTGTTGAATGATTGATTATGAATAA
89306016 T
1 T
89306017 GCATGACGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 1 0.04
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (28 bp):
TATGTGTTGAATGATTGATTATGAATAA
Found at i:89306166 original size:48 final size:48
Alignment explanation
Indices: 89306106--89306421 Score: 280
Period size: 48 Copynumber: 6.6 Consensus size: 48
89306096 TATGTGTGCT
* *
89306106 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * ** *** *
89306154 AGTGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * ** * *
89306202 AATGAAAGACCATGT-TGGGACATGGCATCGG-CATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAG-AGCC
* * * *
89306249 AGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * ** * * *
89306297 AGTGTAAGACCATGTCTAGGACATGGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAGAGCC
* * * * *
89306345 AGAGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
*
89306393 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
89306422 TGGCAATTTA
Statistics
Matches: 212, Mismatches: 49, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
46 1 0.00
47 38 0.18
48 170 0.80
49 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
Found at i:89306275 original size:143 final size:143
Alignment explanation
Indices: 89306093--89306421 Score: 405
Period size: 143 Copynumber: 2.3 Consensus size: 143
89306083 GACATTTGGG
* * * *
89306093 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAACCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTG
* * * * *
89306158 TAAGACCATGT-TTGGAACATGGCATCGGTAATGTTG-TGAGAGCCA-ATGAAAGACCATGT-TG
65 TAAGACCATGTCTAGG-ACATGGCATCAGCAATG-AGACGAGAGCCAGA-GAAAGACCATGTCTG
89306219 GGACATGGCATCGGCAT
127 GGACATGGCATCGGCAT
* * *
89306236 TGATATGTGCACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTG
* * *
89306301 TAAGACCATGTCTAGGACATGGCATCAGCATTGAGACGAGAGCTAGAGTAAGACCATGTCTGGGA
65 TAAGACCATGTCTAGGACATGGCATCAGCAATGAGACGAGAGCCAGAGAAAGACCATGTCTGGGA
*
89306366 CATGGCATCGGCCT
130 CATGGCATCGGCAT
** *
89306380 CAACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCAT
1 TGATATGTGA-CTAGTGTAAGACCATGTTTGGGACATGGCAT
89306422 TGGCAATTTA
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
142 1 0.01
143 101 0.63
144 58 0.36
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (143 bp):
TGATATGTGACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTGT
AAGACCATGTCTAGGACATGGCATCAGCAATGAGACGAGAGCCAGAGAAAGACCATGTCTGGGAC
ATGGCATCGGCAT
Found at i:89310635 original size:21 final size:20
Alignment explanation
Indices: 89310603--89310647 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
89310593 GATATGACTA
* * *
89310603 TGTGGCTATCCATACGCCTG
1 TGTGACTATCCACACGCATG
89310623 TGTGACTACTCCACACGCATG
1 TGTGACTA-TCCACACGCATG
89310644 TGTG
1 TGTG
89310648 CACAAACCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (20 bp):
TGTGACTATCCACACGCATG
Found at i:89314641 original size:29 final size:29
Alignment explanation
Indices: 89314602--89314680 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
89314592 CTTAATAATC
*
89314602 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
89314632 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
89314661 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
89314681 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:89315332 original size:2 final size:2
Alignment explanation
Indices: 89315320--89315349 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
89315310 TGATGGCCGA
*
89315320 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89315350 CAACTATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89322656 original size:29 final size:29
Alignment explanation
Indices: 89322622--89322693 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
89322612 ATCAACCACA
* *
89322622 CACACTTAGTGCCATGTACTTT-AAACTCG
1 CACACTTAGTGCCATGCA-TTTCAAACCCG
*
89322651 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCG
*
89322680 CATACTTAGTGCCA
1 CACACTTAGTGCCA
89322694 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCG
Found at i:89324760 original size:47 final size:46
Alignment explanation
Indices: 89324643--89324815 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
89324633 GGATGGTTGA
89324643 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
89324690 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
89324733 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
89324783 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
89324816 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:89324812 original size:93 final size:92
Alignment explanation
Indices: 89324643--89324812 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
89324633 GGATGGTTGA
* *
89324643 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
89324708 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
89324735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
89324800 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
89324813 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89332338 original size:92 final size:92
Alignment explanation
Indices: 89332181--89332349 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
89332171 GGATGGTTGA
***
89332181 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACACCCGAACTCGTTGAGTT
89332246 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
89332273 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCT-GTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACACCCGAACTCGTTGAGT
89332337 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
89332350 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 54 0.75
93 18 0.25
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACACCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89332353 original size:45 final size:46
Alignment explanation
Indices: 89332185--89332354 Score: 190
Period size: 45 Copynumber: 3.7 Consensus size: 46
89332175 GGTTGAGCAT
***
89332185 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
* * *
89332230 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-A--C
89332275 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
*
89332323 CCGAGCT-GTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89332355 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 54 0.51
46 6 0.06
47 28 0.27
48 3 0.03
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAC
Found at i:89339233 original size:29 final size:29
Alignment explanation
Indices: 89339201--89339335 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
89339191 ATACCCTCCG
** * *
89339201 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
89339230 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
89339259 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
89339288 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
89339317 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
89339336 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:89339268 original size:58 final size:58
Alignment explanation
Indices: 89339147--89339336 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
89339137 TACTCGATTT
* * * *** *
89339147 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
89339205 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
89339263 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
89339321 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
89339337 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:89342231 original size:40 final size:40
Alignment explanation
Indices: 89342175--89342342 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
89342165 CAATTGAATG
* *
89342175 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
89342216 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
89342255 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
89342295 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
89342335 ATATCCGG
1 ATATCCGG
89342343 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:89342308 original size:80 final size:79
Alignment explanation
Indices: 89342175--89342342 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
89342165 CAATTGAATG
* *
89342175 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
89342240 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
89342255 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
89342319 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
89342335 ATATCCGG
1 ATATCCGG
89342343 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:89345595 original size:40 final size:41
Alignment explanation
Indices: 89345533--89345754 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 41
89345523 AACCCAAGTA
* * * *
89345533 CCTTCGGGATTTAG-TCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
* * *
89345572 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
89345612 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
89345652 CCTTCGGGACTTAGCCCGGATATAATCAAC-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
*
89345692 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
*
89345732 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
89345755 CATTCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.09
40 146 0.88
41 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAATCAACTAGCACAAATG
Found at i:89348766 original size:35 final size:35
Alignment explanation
Indices: 89348689--89348758 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
89348679 GGTCTTGGGC
89348689 CCATTTACCATGGTGCCATAGCATCTTTCAACCAT
1 CCATTTACCATGGTGCCATAGCATCTTTCAACCAT
89348724 CCATTTACCATGGTGCCATAGCATCTTTCAACCAT
1 CCATTTACCATGGTGCCATAGCATCTTTCAACCAT
89348759 GGTTTTACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (35 bp):
CCATTTACCATGGTGCCATAGCATCTTTCAACCAT
Found at i:89348788 original size:45 final size:45
Alignment explanation
Indices: 89348727--89348894 Score: 167
Period size: 45 Copynumber: 3.7 Consensus size: 45
89348717 CAACCATCCA
* * * *
89348727 TTTACCATGGTGCCATAGCATCTTTCAACCATGGTTTTACTCATT
1 TTTATCATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATT
** *
89348772 TCTTAT-ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATT
1 T-TTATCATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATT
* * * *
89348817 TTTTTCATGGTGCCACAGCATCTTTCAACTATGGTCTTACACATT
1 TTTATCATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATT
** * * * *
89348862 TGAATCGTGATGTCATAGCGTCTTTCAGCTATG
1 TTTATCATGATGCCATAGCATCTTTCAACTATG
89348895 TTTTACTTGT
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 3 0.03
45 92 0.94
46 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.41
Consensus pattern (45 bp):
TTTATCATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATT
Found at i:89354428 original size:14 final size:14
Alignment explanation
Indices: 89354411--89354438 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
89354401 TCGTGTTTCC
89354411 AAAAACCATTTGTT
1 AAAAACCATTTGTT
89354425 AAAAACCATTTGTT
1 AAAAACCATTTGTT
89354439 TGTGTAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAACCATTTGTT
Found at i:89355328 original size:17 final size:17
Alignment explanation
Indices: 89355288--89355328 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
89355278 ATTGGCCTTG
* *
89355288 CCGTGTGGTCCACACGC
1 CCGTGTGCTCCACACAC
*
89355305 CCTTGTGCTCCACACAC
1 CCGTGTGCTCCACACAC
89355322 CCGTGTG
1 CCGTGTG
89355329 GACTATACGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.12, C:0.41, G:0.24, T:0.22
Consensus pattern (17 bp):
CCGTGTGCTCCACACAC
Found at i:89356004 original size:114 final size:114
Alignment explanation
Indices: 89355799--89356004 Score: 286
Period size: 114 Copynumber: 1.8 Consensus size: 114
89355789 AACACACTTG
* * * *
89355799 AAAACGATTCACAATTGCATAAAACTGAAAGAATACTTACGCACCACAGTCTGAGCAAGTATTAC
1 AAAACGATTCACAATTCCATAAAACTGAAAGAATACTTACCCACCACAGTCCGAGCAAGGATTAC
89355864 AAAACCCAAAACACAGTGATTGAACAATAGTGTGGCGATCATAAATAAA
66 AAAACCCAAAACACAGTGATTGAACAATAGTGTGGCGATCATAAATAAA
* * ** * * *
89355913 AAAATGATTCCCAATTCCATAAAACTTCAAGAATACTTACCCAGCATAGTCCGAGCAGGGATTAC
1 AAAACGATTCACAATTCCATAAAACTGAAAGAATACTTACCCACCACAGTCCGAGCAAGGATTAC
** *
89355978 GGAACCTAAAACACAGTGATTGAACAA
66 AAAACCCAAAACACAGTGATTGAACAA
89356005 CAGTATAGTG
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
114 78 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (114 bp):
AAAACGATTCACAATTCCATAAAACTGAAAGAATACTTACCCACCACAGTCCGAGCAAGGATTAC
AAAACCCAAAACACAGTGATTGAACAATAGTGTGGCGATCATAAATAAA
Found at i:89359472 original size:47 final size:47
Alignment explanation
Indices: 89359403--89359590 Score: 306
Period size: 47 Copynumber: 4.0 Consensus size: 47
89359393 TTGAATTTAG
* * **
89359403 AGCTTGCTAAA-TTGCTCTTAATATTTCCAAATAAGTTACTTAGTTA
1 AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
*
89359449 AGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTTA
1 AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
89359496 AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
1 AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
* *
89359543 AGCTTGTTAAATTTGCCCTTATTATTTCCGGATATGTTACTTAGTTA
1 AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
89359590 A
1 A
89359591 AGAAAATTTT
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 10 0.07
47 125 0.93
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (47 bp):
AGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTA
Found at i:89360472 original size:45 final size:45
Alignment explanation
Indices: 89360408--89360624 Score: 327
Period size: 45 Copynumber: 4.9 Consensus size: 45
89360398 CGCACAGTAT
*
89360408 TATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
89360453 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
89360498 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
89360543 TATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
*
89360588 TATT-GGG-CTTCGAGCCTAGCAGG-TGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGA
89360625 ATGAATTCAA
Statistics
Matches: 161, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
42 11 0.07
43 15 0.09
44 3 0.02
45 131 0.81
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:89361704 original size:19 final size:19
Alignment explanation
Indices: 89361668--89361704 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
89361658 TAACTAGGCT
* *
89361668 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
89361687 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
89361705 GAAAAATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:89361871 original size:3 final size:3
Alignment explanation
Indices: 89361856--89361915 Score: 50
Period size: 3 Copynumber: 18.7 Consensus size: 3
89361846 TATATAAATA
*
89361856 TAT TAT AAT TAT TAT TAT GGT-T TAT ATAT TAGT TAT TAAT TAT TAT
1 TAT TAT TAT TAT TAT TAT --TAT TAT -TAT TA-T TAT T-AT TAT TAT
*
89361902 TGT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
89361916 AATAAATTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
2 1 0.02
3 35 0.74
4 10 0.21
5 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:89362991 original size:15 final size:14
Alignment explanation
Indices: 89362973--89363022 Score: 73
Period size: 15 Copynumber: 3.4 Consensus size: 14
89362963 TTTATTGGAT
89362973 TTATATTGATTGAA
1 TTATATTGATTGAA
*
89362987 GTTATTTTGATTGAAA
1 -TTATATTGATTG-AA
89363003 TTATATTGATTGAA
1 TTATATTGATTGAA
89363017 TTATAT
1 TTATAT
89363023 AATATATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
14 8 0.25
15 22 0.69
16 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TTATATTGATTGAA
Found at i:89364524 original size:46 final size:46
Alignment explanation
Indices: 89364468--89364643 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
89364458 TGGTTGAGCA
*
89364468 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
89364514 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
89364559 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
89364607 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
89364644 GCGAGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 61 0.56
47 27 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:89364624 original size:93 final size:93
Alignment explanation
Indices: 89364465--89364635 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
89364455 GGATGGTTGA
* * *
89364465 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
89364530 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
89364558 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
89364623 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
89364636 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89366468 original size:19 final size:20
Alignment explanation
Indices: 89366444--89366485 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
89366434 ATGAAACAAG
89366444 AAATTGA-AT-TGAGAATTGA
1 AAATTGAGATATGAG-ATTGA
89366463 AAATTGAGATATGAGATTGA
1 AAATTGAGATATGAGATTGA
89366483 AAA
1 AAA
89366486 CCTGAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (20 bp):
AAATTGAGATATGAGATTGA
Found at i:89371381 original size:38 final size:38
Alignment explanation
Indices: 89371320--89371392 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
89371310 CTTGCTCGTA
* *
89371320 TGGCCCACAAGGCCTAGCCCAAAACCTACACGCCCGTG
1 TGGCACACAAGGCCTAGCCCAAAAACTACACGCCCGTG
* *
89371358 TGGCACACACGGCCTAGCCCAAAAATTACACGCCC
1 TGGCACACAAGGCCTAGCCCAAAAACTACACGCCC
89371393 AACTTGGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.29, C:0.41, G:0.19, T:0.11
Consensus pattern (38 bp):
TGGCACACAAGGCCTAGCCCAAAAACTACACGCCCGTG
Found at i:89374669 original size:34 final size:33
Alignment explanation
Indices: 89374620--89374747 Score: 166
Period size: 34 Copynumber: 3.8 Consensus size: 33
89374610 ATGTAATCTG
* * *
89374620 GGCCTAAGCACATTTCAGTCTCAGTAGCAGTTC
1 GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTC
89374653 GAGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTC
1 G-GCCTTAGCCCATTTCAGTTTCAGTAGCAGTTC
* *
89374687 GGGTCTTAGCCCATTTTAGTTTCAGTAGCAGTTC
1 -GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTC
* *
89374721 TGGTCTTAGCCCATTTCAGTTTTAGTA
1 -GGCCTTAGCCCATTTCAGTTTCAGTA
89374748 TCAGATATGC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
33 1 0.01
34 83 0.98
35 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (33 bp):
GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTC
Found at i:89378372 original size:17 final size:16
Alignment explanation
Indices: 89378352--89378392 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
89378342 AATTAAAATA
89378352 AAAATAAAAACAAAAGG
1 AAAATAAAAAC-AAAGG
* *
89378369 AAAAGAAAAACAAAGT
1 AAAATAAAAACAAAGG
89378385 AAAATAAA
1 AAAATAAA
89378393 TGGACTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.78, C:0.05, G:0.10, T:0.07
Consensus pattern (16 bp):
AAAATAAAAACAAAGG
Found at i:89386984 original size:37 final size:37
Alignment explanation
Indices: 89386929--89387008 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
89386919 AAAAGAAAGT
* *
89386929 AAAAGAAGGAAATAAAACAAAAGAATCGGGAATGATG
1 AAAATAAGGAAATAAAACAAAAGAATCGGGAATAATG
89386966 AAAATAAGGAAATAAAACAAAAGAATCGGGAATAATG
1 AAAATAAGGAAATAAAACAAAAGAATCGGGAATAATG
89387003 AAAATA
1 AAAATA
89387009 GCTAAAGTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.62, C:0.05, G:0.20, T:0.12
Consensus pattern (37 bp):
AAAATAAGGAAATAAAACAAAAGAATCGGGAATAATG
Found at i:89387075 original size:13 final size:13
Alignment explanation
Indices: 89387057--89387084 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
89387047 AGAAAAAAAT
89387057 GGTGGAATAGAGA
1 GGTGGAATAGAGA
89387070 GGTGGAATAGAGA
1 GGTGGAATAGAGA
89387083 GG
1 GG
89387085 AAGAGAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.50, T:0.14
Consensus pattern (13 bp):
GGTGGAATAGAGA
Found at i:89389948 original size:22 final size:22
Alignment explanation
Indices: 89389890--89390028 Score: 104
Period size: 22 Copynumber: 6.1 Consensus size: 22
89389880 CCTGAGCTGA
* **
89389890 TGAATAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAACGAGC
89389912 TGAA-ACGATAAGCTCTAACGAGC
1 TGAACA-G-TAAGCTCTAACGAGC
89389935 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTA-ACGAGC
89389957 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTA-ACGAGC
** * * *
89389979 TGAATTGGTAAACTCCAATGAGC
1 TGAA-CAGTAAGCTCTAACGAGC
* *
89390002 TAAAAACAGTAAGCTCTTACGAGC
1 T--GAACAGTAAGCTCTAACGAGC
89390026 TGA
1 TGA
89390029 TATATCGGTA
Statistics
Matches: 95, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
21 2 0.02
22 45 0.47
23 31 0.33
24 15 0.16
25 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAACGAGC
Found at i:89389957 original size:45 final size:44
Alignment explanation
Indices: 89389890--89389982 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 44
89389880 CCTGAGCTGA
* *
89389890 TGAATAGTAAGCTCTATTGAGCTGAA-ACGATAAGCTC-TAACGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAACA-G-TAAGCTCAT-ACGAGC
89389935 TGAACAGTAAGCTC-ATACGAGCTGAACAGTAAGCTCATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGCTGAACAGTAAGCTCATACGAGC
89389979 TGAA
1 TGAA
89389983 TTGGTAAACT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
44 19 0.44
45 23 0.53
46 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (44 bp):
TGAACAGTAAGCTCTATCGAGCTGAACAGTAAGCTCATACGAGC
Found at i:89392553 original size:65 final size:65
Alignment explanation
Indices: 89392449--89392579 Score: 208
Period size: 65 Copynumber: 2.0 Consensus size: 65
89392439 TGTTATTGAA
* **
89392449 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTATTGTGAGTTGTGATTAACAGG
1 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTACTGTGAACTGTGATTAACAGG
* * *
89392514 ATTGAGAAATTGATTTGTATTATTGTTTGAGCATTACTCACTTGCTGTGAACTGTGATTAACAGG
1 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTACTGTGAACTGTGATTAACAGG
89392579 A
1 A
89392580 ACTCTGTTAG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (65 bp):
ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTACTGTGAACTGTGATTAACAGG
Found at i:89397478 original size:25 final size:25
Alignment explanation
Indices: 89397444--89397494 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
89397434 TTCCTTATAA
**
89397444 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
89397469 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
89397494 A
1 A
89397495 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:89397493 original size:12 final size:12
Alignment explanation
Indices: 89397447--89397494 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
89397437 CTTATAAACT
89397447 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
89397459 TTCTATTAGGACT
1 TTAAATTAGGA-A
89397472 TTAAATTAGGAA
1 TTAAATTAGGAA
*
89397484 TTAGATTAGGA
1 TTAAATTAGGA
89397495 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:89402141 original size:25 final size:25
Alignment explanation
Indices: 89402107--89402157 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
89402097 TTCCTTATAA
**
89402107 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
89402132 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
89402157 A
1 A
89402158 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:89402156 original size:12 final size:12
Alignment explanation
Indices: 89402110--89402157 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
89402100 CTTATAAACT
89402110 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
89402122 TTCTATTAGGACT
1 TTAAATTAGGA-A
89402135 TTAAATTAGGAA
1 TTAAATTAGGAA
*
89402147 TTAGATTAGGA
1 TTAAATTAGGA
89402158 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:89410869 original size:131 final size:128
Alignment explanation
Indices: 89410635--89410898 Score: 501
Period size: 131 Copynumber: 2.0 Consensus size: 128
89410625 TTGGCCGACC
89410635 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
1 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
89410700 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTATTTAGTCTTTCAT
66 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGG--TA-TATTTAGTCTTTCAT
89410765 G
128 G
89410766 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
1 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
89410831 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
66 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
89410894 TCTTT
1 TCTTT
89410899 ATTGTCTCTA
Statistics
Matches: 133, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
128 21 0.16
129 2 0.02
131 110 0.83
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (128 bp):
TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
Found at i:89416500 original size:43 final size:42
Alignment explanation
Indices: 89416431--89416632 Score: 221
Period size: 43 Copynumber: 4.7 Consensus size: 42
89416421 TATGTGTTAT
*
89416431 CGTGTAAGACCACGTCTAGGACGTTGGCATCGACTTATAATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATAATTA
* * * *
89416474 CGTGTAAGACCACATCTGAGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTAT-AATTA
* *
89416518 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATT-TGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTATAATTA
* * *
89416560 CGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGAT-TATAATTA
*
89416603 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
89416633 TGTACGAGCT
Statistics
Matches: 136, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
41 3 0.02
42 31 0.23
43 65 0.48
44 36 0.26
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTATAATTA
Found at i:89421840 original size:40 final size:40
Alignment explanation
Indices: 89421678--89421879 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
89421668 CGAATGATGT
*
89421678 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
89421718 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
89421757 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
89421795 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
89421836 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
89421876 CCGG
1 CCGG
89421880 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:89421842 original size:78 final size:79
Alignment explanation
Indices: 89421677--89421828 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
89421667 TCGAATGATG
* * *
89421677 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
89421742 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
89421757 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
89421820 GTGCAAGTC
65 GTGCAAGTC
89421829 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:89429915 original size:40 final size:40
Alignment explanation
Indices: 89429753--89429954 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
89429743 CGAATGATGT
*
89429753 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
89429793 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
89429832 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
89429870 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
89429911 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
89429951 CCGG
1 CCGG
89429955 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:89429917 original size:78 final size:79
Alignment explanation
Indices: 89429752--89429903 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
89429742 TCGAATGATG
* * *
89429752 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
89429817 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
89429832 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
89429895 GTGCAAGTC
65 GTGCAAGTC
89429904 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:89434285 original size:13 final size:13
Alignment explanation
Indices: 89434267--89434291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89434257 GAATTAGTAT
89434267 GTGTGAAAATTTC
1 GTGTGAAAATTTC
89434280 GTGTGAAAATTT
1 GTGTGAAAATTT
89434292 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:89435457 original size:44 final size:43
Alignment explanation
Indices: 89435386--89435588 Score: 220
Period size: 44 Copynumber: 4.7 Consensus size: 43
89435376 TATGTGTTAT
* * *
89435386 CGTGTAAGACCACATCTAGGACA-TTGGCATCGACTTATAATTTA
1 CGTGTAAGACCACGTCTGGGA-AGTTGGCATCGA-TTATGATTTA
* * *
89435430 CGTGTAAGACCACGTGTGGGATGTTGGCATCGGCTTATGATTTA
1 CGTGTAAGACCACGTCTGGGAAGTTGGCATC-GATTATGATTTA
*
89435474 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATT-TGATTT-
1 CGTGTAAGACCACGTCTGGGAAGTTGGCATCG-ATTATGATTTA
*
89435516 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGA-AGTTGGCATCGAT-TATGATTTA
*
89435559 CATGTAAGACCACGTCTGGGAAGTTGGCAT
1 CGTGTAAGACCACGTCTGGGAAGTTGGCAT
89435589 TGTACGAGCT
Statistics
Matches: 138, Mismatches: 11, Indels: 21
0.81 0.06 0.12
Matches are distributed among these distances:
41 3 0.02
42 32 0.23
43 35 0.25
44 67 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGAAGTTGGCATCGATTATGATTTA
Found at i:89441051 original size:16 final size:16
Alignment explanation
Indices: 89441030--89441060 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89441020 ATTGGGTTGA
*
89441030 GAAAATTATTTAATTG
1 GAAAATTAATTAATTG
89441046 GAAAATTAATTAATT
1 GAAAATTAATTAATT
89441061 AAATTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
GAAAATTAATTAATTG
Found at i:89441085 original size:4 final size:5
Alignment explanation
Indices: 89441048--89441083 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
89441038 TTTAATTGGA
89441048 AAATT -AATT -AATT AAATT AAATT AAATT AAA-T AAAT
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AAAT
89441084 AATGTCTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.41
5 17 0.59
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:89443863 original size:46 final size:44
Alignment explanation
Indices: 89443729--89443856 Score: 118
Period size: 46 Copynumber: 2.8 Consensus size: 44
89443719 TATGAAATGC
* * * *
89443729 CAGTGTAAGACATGTCTAGGACATGCATCGGCATTGA-GACGA-GAGC
1 CAGTATAAGACATATCTAGGACATGCATCGGC--T-ACGA-GATGTGT
* *
89443775 CAGTGTAAGACATATCTGGGACATGCATCGGCTACGAGATGTGT
1 CAGTATAAGACATATCTAGGACATGCATCGGCTACGAGATGTGT
*
89443819 CAGTATAAGACCATTTCTAGGACATGACATCGGC-ACGA
1 CAGTATAAGA-CATATCTAGGACATG-CATCGGCTACGA
89443857 ATATGTGAGA
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.04
44 14 0.20
45 17 0.24
46 37 0.52
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (44 bp):
CAGTATAAGACATATCTAGGACATGCATCGGCTACGAGATGTGT
Found at i:89443892 original size:50 final size:49
Alignment explanation
Indices: 89443824--89443943 Score: 120
Period size: 49 Copynumber: 2.4 Consensus size: 49
89443814 TGTGTCAGTA
*
89443824 TAAGACCAT-TTCTAGGACATGACATCG-GCACGAATATGT-GAGAGCTAGTG
1 TAAGACCATGTT-TGGGACATGACATCGAGCACG-AT-T-TCGAGAGCTAGTG
* * * * * *
89443874 TAAGACCATGTTTGGGACATGGCGTCGATCTCGATTTCGATAGTTAGTG
1 TAAGACCATGTTTGGGACATGACATCGAGCACGATTTCGAGAGCTAGTG
89443923 TAAGACCATGTTTGGGACATG
1 TAAGACCATGTTTGGGACATG
89443944 GCATTGACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
48 1 0.02
49 31 0.52
50 23 0.38
51 5 0.08
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (49 bp):
TAAGACCATGTTTGGGACATGACATCGAGCACGATTTCGAGAGCTAGTG
Found at i:89456500 original size:21 final size:19
Alignment explanation
Indices: 89456465--89456504 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
89456455 AGTGGCCACC
89456465 CGTAAATTCTAGACTATTAT
1 CGTAAATTCTAGACT-TTAT
*
89456485 CGTAAATTTTTAGACTTTAT
1 CGTAAA-TTCTAGACTTTAT
89456505 TACTTATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (19 bp):
CGTAAATTCTAGACTTTAT
Found at i:89464366 original size:18 final size:17
Alignment explanation
Indices: 89464334--89464369 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
89464324 CAATTTGGGT
89464334 CGTGTAGGCCACACAGG
1 CGTGTAGGCCACACAGG
*
89464351 CGTGTGGGCACACACAGG
1 CGTGTAGGC-CACACAGG
89464369 C
1 C
89464370 AGGCCACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.22, C:0.31, G:0.36, T:0.11
Consensus pattern (17 bp):
CGTGTAGGCCACACAGG
Found at i:89465633 original size:16 final size:18
Alignment explanation
Indices: 89465607--89465639 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
89465597 TGTAATTGGG
89465607 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
89465624 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
89465640 TTTAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:89471670 original size:28 final size:27
Alignment explanation
Indices: 89471637--89471692 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
89471627 TTAGAATACT
*
89471637 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-CTAAAAATACCGAAATACCC
* *
89471665 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACCGAAATACCC
89471692 T
1 T
89471693 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACCC
Found at i:89471676 original size:27 final size:28
Alignment explanation
Indices: 89471646--89471745 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
89471636 TTTAGTTTAC
89471646 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
89471673 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * * *
89471700 TAAATTTACCAAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
89471727 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
89471746 CCGATTTACA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.12
27 51 0.85
28 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:89471771 original size:27 final size:27
Alignment explanation
Indices: 89471748--89472140 Score: 417
Period size: 27 Copynumber: 14.6 Consensus size: 27
89471738 AAGTACCCCC
*
89471748 GATTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
89471775 AATTTACATAATTACCATTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
89471802 AATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
89471829 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
89471856 AATTTACATAATTATCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89471883 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89471910 GACTTACAAAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89471937 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89471964 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
89471991 GACTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89472018 GATTTACTGAATTGCTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* **
89472045 GATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
89472072 GATTTATAGAATTGCTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
89472099 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
*
89472126 GATTTACAAAATTAC
1 GATTTACAGAATTAC
89472141 TAAAATACCC
Statistics
Matches: 316, Mismatches: 50, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 316 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:89471790 original size:81 final size:81
Alignment explanation
Indices: 89471705--89472015 Score: 243
Period size: 81 Copynumber: 3.8 Consensus size: 81
89471695 ATTTGTAAAT
* * *
89471705 TTACCAAAATACCTTCGACTTGTA-A-AATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
1 TTACCAAAATACC-CCGAATT-TACATAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
89471768 TACCCCTAATTTACATAA
64 TACCCCTAATTTACATAA
*** * * **** *
89471786 TTACCATTTTACCCCTAATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTA
1 TTACCAAAATACCCCGAATTTACATAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTTTA
89471851 CCCCTAATTTACATAA
66 CCCCTAATTTACATAA
* **** * **** * *
89471867 TTATCGTTTTACCCCTG-ATTTACATAATTATCGTTTTACCCTCGACTTACAAAATTACCGTTTT
1 TTACCAAAATACCCC-GAATTTACATAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTTT
89471931 ACCCCTAATTTACATAA
65 ACCCCTAATTTACATAA
**** * **** *
89471948 TTACCGTTTTACCCCTG-ATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTT
1 TTACCAAAATACCCC-GAATTTACATAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTTT
89472012 ACCC
65 ACCC
89472016 TCGATTTACT
Statistics
Matches: 208, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.01
80 5 0.02
81 201 0.97
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.38
Consensus pattern (81 bp):
TTACCAAAATACCCCGAATTTACATAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTTTA
CCCCTAATTTACATAA
Found at i:89472023 original size:81 final size:81
Alignment explanation
Indices: 89471741--89472139 Score: 527
Period size: 81 Copynumber: 4.9 Consensus size: 81
89471731 ATTACCAAAG
* * * *
89471741 TACCCCCGATTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCCCTAATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
89471806 TACATAATTATCGTTT
66 TACATAATTATCGTTT
*
89471822 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTATCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
89471887 TACATAATTATCGTTT
66 TACATAATTATCGTTT
*
89471903 TACCCTCGACTTACAAAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
89471968 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* * * *
89471984 TACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TGAATTGCTGTTTTACCCTTGA
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACAT-AATTACCGTTTTACCCCTGA
* * *
89472047 TTTATAGAATTA-CTATTT
64 TTTACATAATTATC-GTTT
* * * * * * * * *
89472065 TACCCTTGATTTATAGAATTGCTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCTCGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCT-GAT
*
89472129 TTACAAAATTA
65 TTACATAATTA
89472140 CTAAAATACC
Statistics
Matches: 286, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
80 9 0.03
81 274 0.96
82 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Done.