Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 31 of 444
Found at i:7674050 original size:12 final size:14
Alignment explanation
Indices: 7674022--7674053 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7674012 AATAAAAATG
7674022 TAAAAAAATATATA
1 TAAAAAAATATATA
7674036 TAAAAAAAT-TA-A
1 TAAAAAAATATATA
7674048 TAAAAA
1 TAAAAA
7674054 GTAAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 2 0.11
14 9 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAAAAAATATATA
Found at i:7674842 original size:2 final size:2
Alignment explanation
Indices: 7674835--7674869 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7674825 TGTTAAAAAG
7674835 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7674870 TAAACTACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7676658 original size:23 final size:23
Alignment explanation
Indices: 7676609--7676681 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 23
7676599 ATTTAATTGT
* * *
7676609 AATTTTTAATAATTTAATTCTAT
1 AATTTTTAAAAATTTAAATCTAA
7676632 AATTTTTAAAAAATTTAAATC-AA
1 AATTTTT-AAAAATTTAAATCTAA
** *
7676655 AA-TTTTATCATTTTAAAT-TAA
1 AATTTTTAAAAATTTAAATCTAA
7676676 AATTTT
1 AATTTT
7676682 ATCATTTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 13 0.32
22 7 0.17
23 10 0.24
24 11 0.27
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTTTTAAAAATTTAAATCTAA
Found at i:7676671 original size:21 final size:21
Alignment explanation
Indices: 7676645--7676689 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
7676635 TTTTAAAAAA
7676645 TTTAAATCAAAATTTTATCAT
1 TTTAAATCAAAATTTTATCAT
*
7676666 TTTAAATTAAAATTTTATCAT
1 TTTAAATCAAAATTTTATCAT
7676687 TTT
1 TTT
7676690 TAGAGGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAAATCAAAATTTTATCAT
Found at i:7677141 original size:132 final size:131
Alignment explanation
Indices: 7676984--7677369 Score: 400
Period size: 132 Copynumber: 2.9 Consensus size: 131
7676974 TCTTGTGCGG
* * * * *
7676984 CTCAAAAAAATATAAACAAATTTTTATAATAATATATATTTTACTTCTCATCGGAGTGTGCCTAA
1 CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA
* * * * * *
7677049 AAAGGATAGAATGTACTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGGAT
66 AAA-GTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGCAC
7677114 GA
130 GA
* * *
7677116 CTCAAAAAAATATTAGTAATTTTTTATAATAATATATATTTTACCTCTCATCGAAGTGTGACTGA
1 CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA
* * ** **
7677181 AAATGTTAAAATTTGCTCACTCATTTATCGGTGAA-GTATACATGGTATGACATTTATCCTTGCA
66 AAA-GTTAAAATATGCTCACTCATTTA-CCGACAAGGTATACATGACATGACATTTATCCTTGCA
7677245 CGA
129 CGA
* * * * * ** *
7677248 ATTAAAAACATATCAATAAATTTTTT-TAATAATAGATATTTTACCTCTCGGCGGAATGT-ATCT
1 CTCAAAAAAATATAAAT-AATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGA-CT
* * ** * *
7677311 GAAAAGTTATAATATGCTTACTCATTTATTGATAAGGTATACATGACATGGCATTTATC
64 GAAAAGTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATC
7677370 TCTGGGTTGT
Statistics
Matches: 210, Mismatches: 40, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
130 3 0.01
131 41 0.20
132 154 0.73
133 12 0.06
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (131 bp):
CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA
AAAGTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGCACG
A
Found at i:7677747 original size:26 final size:26
Alignment explanation
Indices: 7677710--7677767 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
7677700 TGATACAAAT
*
7677710 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGATAAATGTTCCA
* *
7677736 TGATAATGGGTTAGATAAATGTTTCA
1 TGATAATAGGTTAGATAAATGTTCCA
7677762 TGATAA
1 TGATAA
7677768 GAATTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGATAAATGTTCCA
Found at i:7679158 original size:19 final size:19
Alignment explanation
Indices: 7679096--7679163 Score: 109
Period size: 20 Copynumber: 3.5 Consensus size: 19
7679086 TTTGGGCTTA
*
7679096 ATGGGCCAAAGATCGAGTTC
1 ATGGGCCAAAGATCG-GGTC
7679116 ATGGGCCAAAGATCGGGTTC
1 ATGGGCCAAAGATCGGG-TC
7679136 ATGGGCCAAAGATCGGGTC
1 ATGGGCCAAAGATCGGGTC
7679155 ATGGGCCAA
1 ATGGGCCAA
7679164 CGGGCCCAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
19 12 0.26
20 34 0.74
ACGTcount: A:0.28, C:0.21, G:0.34, T:0.18
Consensus pattern (19 bp):
ATGGGCCAAAGATCGGGTC
Found at i:7679468 original size:27 final size:27
Alignment explanation
Indices: 7679427--7679548 Score: 163
Period size: 27 Copynumber: 4.5 Consensus size: 27
7679417 GAGGAAGCGT
* *
7679427 TCTGGTGGCTATGCCATAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
7679454 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
7679481 TTTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
7679508 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
*
7679536 TCTGGTGACTCTG
1 TCTGGTGGCTCTG
7679549 TCATATTATC
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 71 0.86
28 12 0.14
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:7679512 original size:54 final size:55
Alignment explanation
Indices: 7679427--7679566 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 55
7679417 GAGGAAGCGT
* * *
7679427 TCTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * * *
7679481 TTTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
7679536 TCTGGTGACTCTGTCATAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCATATATATCTGTTCTGG
7679567 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 58 0.78
55 16 0.22
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:7679556 original size:27 final size:28
Alignment explanation
Indices: 7679427--7679566 Score: 148
Period size: 27 Copynumber: 5.2 Consensus size: 28
7679417 GAGGAAGCGT
* * *
7679427 TCTGGTGGCTATGCCATAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
*
7679454 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
*
7679481 TTTGGTGGCTCTGCCAC-ATATATCTGT-
1 TCTGGTGGCTCTGCCACAAT-TATCTGTA
*
7679508 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* * *
7679536 TCTGGTGACTCTGTCA-TATTATCTGT-
1 TCTGGTGGCTCTGCCACAATTATCTGTA
7679562 TCTGG
1 TCTGG
7679567 CAGCCATGCT
Statistics
Matches: 101, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
26 6 0.06
27 79 0.78
28 16 0.16
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAATTATCTGTA
Found at i:7679652 original size:19 final size:22
Alignment explanation
Indices: 7679628--7679667 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
7679618 CTCCCCACAC
7679628 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
7679647 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
7679668 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:7682417 original size:32 final size:32
Alignment explanation
Indices: 7682376--7682472 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
7682366 AATGCTTATC
*
7682376 ATGCCCATCATCTATTAACTATTAAAATGTTA
1 ATGCCCATCATCTATTAACTATTAAAATGCTA
7682408 ATGCCCATCAT-TCATTAACTATTAAAATGCTA
1 ATGCCCATCATCT-ATTAACTATTAAAATGCTA
*
7682440 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCTATTAACTATTAAAATGCTA
7682472 A
1 A
7682473 AATGCATACA
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.02
32 60 0.98
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (32 bp):
ATGCCCATCATCTATTAACTATTAAAATGCTA
Found at i:7683367 original size:44 final size:44
Alignment explanation
Indices: 7683304--7683474 Score: 324
Period size: 44 Copynumber: 3.9 Consensus size: 44
7683294 AGTCCGATGA
7683304 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
7683348 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
*
7683392 ACTTGTAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
*
7683436 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAAGGAG
1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAG
7683475 GCCAAATCTG
Statistics
Matches: 124, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 124 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (44 bp):
ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG
Found at i:7683762 original size:76 final size:73
Alignment explanation
Indices: 7683646--7683877 Score: 261
Period size: 73 Copynumber: 3.1 Consensus size: 73
7683636 AAAAAAAAAG
* * *
7683646 AAATTGAAAATATCTCAG-TGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCTGTG-CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTT
7683710 TTTGAAACAT
64 TTTGAAACAT
* * * *
7683720 AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGC-TGTG-CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
*** *
7683785 TGAAAAACAA
64 TTTGAAACAT
* * * *
7683795 AAACTGAAAATACCTCAGCGTGTG-CTGAGGCTCAACTCATCTCTTGCAATATGAGCTGATTTTT
1 AAATTGAAAATACCTCAGC-TGTGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTT
7683859 TTGAAACAT
65 TTGAAACAT
*
7683868 AAATTAAAAA
1 AAATTGAAAA
7683878 ACACAAACTA
Statistics
Matches: 129, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
73 47 0.36
74 16 0.12
75 31 0.24
76 35 0.27
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCTGTGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
TGAAACAT
Found at i:7683938 original size:160 final size:160
Alignment explanation
Indices: 7683770--7684269 Score: 883
Period size: 160 Copynumber: 3.1 Consensus size: 160
7683760 ACCTCTAGCA
* * *
7683770 ATATGAGTCGATTTTTGAAAAACAAAAACTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAT
1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC
*
7683835 CTCTTGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
7683900 CGTGCCCTGAGGCTCAACTCATTTCTCGCT
131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT
*
7683930 ATATGAGTCGATTCTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC
1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC
7683995 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
*
7684060 CGTGCCTTGAGGCTCAACTCATTTCTCGCT
131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT
*
7684090 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC
* * *** *
7684155 CTCTCGTAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAAACACAAACTAAGCATACCTCAG
66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
7684220 CGTGCCCTGAGGCTCAACTCATTTCTCGCT
131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT
7684250 ATATGAGTCGATTTTTGAAA
1 ATATGAGTCGATTTTTGAAA
7684270 TAGAAATAAA
Statistics
Matches: 325, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 325 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (160 bp):
ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC
CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG
CGTGCCCTGAGGCTCAACTCATTTCTCGCT
Found at i:7683953 original size:87 final size:87
Alignment explanation
Indices: 7683787--7683964 Score: 216
Period size: 87 Copynumber: 2.0 Consensus size: 87
7683777 TCGATTTTTG
** *
7683787 AAAAACAAAAACTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCATCTCTTGCAATATGAGCT
1 AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGCT
* *** *
7683852 GATTTTTTTGAAACATAAATTA
66 GATTCTTGAAAAACAAAAATTA
* * * *
7683874 AAAAACACAAACT-AAGCATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAG-
1 AAAAACAAAAACTGAA-AATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGC
7683937 TCGATTCTTGAAAAACAAAAATTA
65 T-GATTCTTGAAAAACAAAAATTA
7683961 AAAA
1 AAAA
7683965 TACCTCAGCG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.04
87 74 0.96
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (87 bp):
AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGCT
GATTCTTGAAAAACAAAAATTA
Found at i:7684026 original size:73 final size:73
Alignment explanation
Indices: 7683891--7684197 Score: 256
Period size: 73 Copynumber: 4.0 Consensus size: 73
7683881 CAAACTAAGC
** *
7683891 ATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAGTCGATTCTTGAAAAACAAA
1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA
7683956 AATTAAAA
66 AATTAAAA
** * *** *
7683964 ATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAG-CTGATTTTTTTGAAACAT
1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC-GATTCTTGAAAAACAA
7684028 AAATTAAAAA
65 AAATT-AAAA
* * * * * * * * *
7684038 ACACAAACTAAGCATACCTCAGCGTGCCTTGAGGCTCAACTCATTTCTCGCTATATGAGTCGATT
1 ATAC---CTCAGCGTGCC-CTGAG-G-C-TCA-ACTC-AC-C---TCTCGCAATATGAGTCGATT
*
7684103 TTTGAAAAACAAAAATTAAAA
53 CTTGAAAAACAAAAATTAAAA
* * * *
7684124 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAAA
1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA
7684189 AATTAAAA
66 AATTAAAA
7684197 A
1 A
7684198 ACACAAACTA
Statistics
Matches: 181, Mismatches: 37, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
72 1 0.01
73 96 0.53
74 7 0.04
76 1 0.01
77 8 0.04
78 6 0.03
79 3 0.02
80 2 0.01
81 3 0.02
82 6 0.03
83 9 0.05
84 1 0.01
86 7 0.04
87 30 0.17
88 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (73 bp):
ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA
AATTAAAA
Found at i:7684038 original size:87 final size:87
Alignment explanation
Indices: 7683947--7684124 Score: 216
Period size: 87 Copynumber: 2.0 Consensus size: 87
7683937 TCGATTCTTG
* *
7683947 AAAAACAAAAATTAAAAATACCTCAGCGTGTGC-TGAGGCTCAACTCACCTCTCGCAATATGAG-
1 AAAAACAAAAACTAAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*** *
7684010 CTGATTTTTTTGAAACATAAATTA
65 C-GATTTTTGAAAAACAAAAATTA
* ** ** *
7684034 AAAAACACAAACTAAGCATACCTCAGCGTGCCTTGAGGCTCAACTCATTTCTCGCTATATGAGTC
1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTC
7684099 GATTTTTGAAAAACAAAAATTA
66 GATTTTTGAAAAACAAAAATTA
7684121 AAAA
1 AAAA
7684125 TACCTCAGCG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 1 0.01
87 75 0.97
88 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26
Consensus pattern (87 bp):
AAAAACAAAAACTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTGAAAAACAAAAATTA
Found at i:7684198 original size:87 final size:87
Alignment explanation
Indices: 7684107--7684269 Score: 238
Period size: 87 Copynumber: 1.9 Consensus size: 87
7684097 TCGATTTTTG
* *
7684107 AAAAACAAAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG-TAATATGAGT
1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCT-ATATGAGT
*
7684171 TGATTTTTGAAAAACAAAAATTA
65 CGATTTTTGAAAAACAAAAATTA
* ** **
7684194 AAAAACACAAACTAAGCATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAGTC
1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCTATATGAGTC
7684259 GATTTTTGAAA
66 GATTTTTGAAA
7684270 TAGAAATAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
87 66 0.99
88 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (87 bp):
AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCTATATGAGTC
GATTTTTGAAAAACAAAAATTA
Found at i:7685079 original size:43 final size:41
Alignment explanation
Indices: 7685030--7685145 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 41
7685020 CTTCATTAGA
* * * *
7685030 ACGCCCTTTCGGGTTTTTATCCTAT-TTTTTTGTGTTAATCAAG
1 ACGCCCTTTCGGGTTTTCA-CCT-TGATCTTT-TGCTAATCAAG
7685073 ACGCCCTTTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG
1 ACGCCC-TTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG
7685115 ACGCCCTTCTCGGGTTTTCACC-TGATCTTTT
1 ACGCCCTT-TCGGGTTTTCACCTTGATCTTTT
7685146 TTTCGAGTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
41 11 0.17
42 30 0.45
43 13 0.20
44 12 0.18
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44
Consensus pattern (41 bp):
ACGCCCTTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG
Found at i:7685122 original size:42 final size:41
Alignment explanation
Indices: 7685065--7685145 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 41
7685055 TTTTTTGTGT
*
7685065 TAATCAAGACGCCCTTTTCGGGTTTTCACCTTGATCTTTTGC
1 TAATCAAGACGCCCTTCTCGGGTTTTCACC-TGATCTTTTGC
7685107 TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTT
1 TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTT
7685146 TTTCGAGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 9 0.24
42 29 0.76
ACGTcount: A:0.17, C:0.27, G:0.16, T:0.40
Consensus pattern (41 bp):
TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTTGC
Found at i:7696314 original size:23 final size:25
Alignment explanation
Indices: 7696287--7696332 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
7696277 GAAAAATGTT
7696287 TACATAATA-ATAT-TAAATATAGG
1 TACATAATATATATATAAATATAGG
*
7696310 TACATAATATATATATATATATA
1 TACATAATATATATATAAATATA
7696333 TTCATAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 4 0.20
25 7 0.35
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (25 bp):
TACATAATATATATATAAATATAGG
Found at i:7696696 original size:24 final size:26
Alignment explanation
Indices: 7696659--7696710 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
7696649 TATATATTCG
* *
7696659 TAATATATACAAACGTATATATAATA
1 TAATATATACAAACATATACATAATA
*
7696685 TAATAT-TA-AAACATTTACATAATA
1 TAATATATACAAACATATACATAATA
7696709 TA
1 TA
7696711 TATCCACCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 15 0.65
25 2 0.09
26 6 0.26
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (26 bp):
TAATATATACAAACATATACATAATA
Found at i:7696842 original size:41 final size:40
Alignment explanation
Indices: 7696791--7696884 Score: 107
Period size: 42 Copynumber: 2.3 Consensus size: 40
7696781 GATTATGCAT
* *
7696791 TAGCGGCGTTTGCACAAAAATGCCGCTAAAAAACTGAGTAA
1 TAGCGGCGTTTGCAC-AAAACGCCGCTAAAAAACTGAGAAA
** * *
7696832 TAGCGGCGTTTTTGGTCCAAACGCCGCTAAAAAACTTAGAAA
1 TAGCGGCG--TTTGCACAAAACGCCGCTAAAAAACTGAGAAA
7696874 TAGCGGCGTTT
1 TAGCGGCGTTT
7696885 TTAGTCCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
40 3 0.07
41 8 0.18
42 29 0.64
43 5 0.11
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (40 bp):
TAGCGGCGTTTGCACAAAACGCCGCTAAAAAACTGAGAAA
Found at i:7696876 original size:42 final size:42
Alignment explanation
Indices: 7696812--7696926 Score: 171
Period size: 42 Copynumber: 2.8 Consensus size: 42
7696802 GCACAAAAAT
*
7696812 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTGGTCCAAAC
1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
* *
7696854 GCCGCTAAAAAACTTAGAAATAGCGGCGTTTTTAGTCCAAAC
1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
* *
7696896 CCCGCT--AAAACTGAGTAATAGCAGCGTTTTT
1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTT
7696927 TAAGAAAATG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 22 0.33
42 44 0.67
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (42 bp):
GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
Found at i:7697609 original size:21 final size:21
Alignment explanation
Indices: 7697575--7697614 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7697565 TTAAGTTTAT
* * *
7697575 GGTTTGGTATTTTAGATTTGG
1 GGTTTAGTAATTTAAATTTGG
7697596 GGTTTAGTAATTTAAATTT
1 GGTTTAGTAATTTAAATTT
7697615 TGTTGTTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (21 bp):
GGTTTAGTAATTTAAATTTGG
Found at i:7697703 original size:20 final size:18
Alignment explanation
Indices: 7697659--7697697 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7697649 GTCTTAGTAC
7697659 ATGTTTAGAGTATTATAT
1 ATGTTTAGAGTATTATAT
*
7697677 ATGTTTATAGTATTATAT
1 ATGTTTAGAGTATTATAT
7697695 ATG
1 ATG
7697698 GTTTTAGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (18 bp):
ATGTTTAGAGTATTATAT
Found at i:7697862 original size:36 final size:37
Alignment explanation
Indices: 7697773--7697862 Score: 94
Period size: 36 Copynumber: 2.4 Consensus size: 37
7697763 AGTAAAAATC
* *
7697773 TTGACGTTTATGGTTTACGAATTTAGGGTATATGGAAT
1 TTGA-GTTTATGGTTTACAAATTTAGGGTATAGGGAAT
* * * *
7697811 TAGGGTTTA-GAGTTTA-AAATTTAGGGTTTAGGGTAT
1 TTGAGTTTATG-GTTTACAAATTTAGGGTATAGGGAAT
7697847 TTGAGTTTATGGTTTA
1 TTGAGTTTATGGTTTA
7697863 GTTTATAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
36 29 0.69
37 11 0.26
38 2 0.05
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (37 bp):
TTGAGTTTATGGTTTACAAATTTAGGGTATAGGGAAT
Found at i:7700897 original size:64 final size:64
Alignment explanation
Indices: 7700829--7700962 Score: 209
Period size: 64 Copynumber: 2.1 Consensus size: 64
7700819 TAATATTTCT
* *
7700829 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGA-TATAATATGTCTCATCTAATATAA-A
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATT-ATTATAATATGTCCCATCTAATA-AACA
7700892 A
64 A
*
7700893 ATATTTCTATCACAATTTTTGATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA
7700957 ATATTT
1 ATATTT
7700963 AATAAAATAT
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
63 3 0.05
64 62 0.95
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACAATTTTTAATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA
Found at i:7701037 original size:24 final size:24
Alignment explanation
Indices: 7701010--7701080 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
7701000 ATTATTATTG
* *
7701010 AAATATTCTCTTCCATTTTATCAC
1 AAATATTATCTTCCGTTTTATCAC
* *
7701034 AAATATTATTTTCCGTTTTACCAC
1 AAATATTATCTTCCGTTTTATCAC
*
7701058 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCTTCCGTTTTATCA
7701081 TTTAAGTTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (24 bp):
AAATATTATCTTCCGTTTTATCAC
Found at i:7701545 original size:240 final size:241
Alignment explanation
Indices: 7701122--7701783 Score: 1236
Period size: 240 Copynumber: 2.7 Consensus size: 241
7701112 ATACCTTTTT
7701122 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
*
7701187 TACAACAATAGTTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
* *
7701252 CTGGAAACATGACGGGTTGCTTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
7701317 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAA
196 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
7701362 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
* *
7701427 TACAACAATAGCTGACCTTCTCTCTAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATTTAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
7701492 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
7701557 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
196 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
* *
7701603 AAGGTTCTATCGAGCTCATTTACTATTGAATATTCATTACCATGTAGCTTGCTTGTCCATTAAAA
1 AA-GTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAA
7701668 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
65 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
*
7701733 GTTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATC
130 GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATC
7701784 AAATTTCATA
Statistics
Matches: 410, Mismatches: 10, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
240 232 0.57
241 5 0.01
242 173 0.42
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (241 bp):
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
Found at i:7707816 original size:43 final size:43
Alignment explanation
Indices: 7707769--7707858 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
7707759 TCTGCCAAAA
* * *
7707769 TTAGCGGCGTTTGT-AGAAAAAGCGCCGCTATAAGCCTTGACTT
1 TTAGCGGCGTTTGTCACAAAAA-CGCCGCTAAAAGCCGTGACTT
* * *
7707812 TTAGCGGCGTTTTTCCCACAAACGCCGCTAAAAGCCGTGACTT
1 TTAGCGGCGTTTGTCACAAAAACGCCGCTAAAAGCCGTGACTT
7707855 TTAG
1 TTAG
7707859 TGGCATTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 36 0.90
44 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTGTCACAAAAACGCCGCTAAAAGCCGTGACTT
Found at i:7707878 original size:43 final size:43
Alignment explanation
Indices: 7707791--7707880 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
7707781 GTAGAAAAAG
* * * *
7707791 CGCCGCTATAAGCCTTGACTTTTAGCGGCGTTTTTCCCACAAA
1 CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA
* * *
7707834 CGCCGCTAAAAGCCGTGACTTTTAGTGGCATTTTTTCAATAAA
1 CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA
7707877 CGCC
1 CGCC
7707881 ACAAATTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (43 bp):
CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA
Found at i:7708285 original size:22 final size:22
Alignment explanation
Indices: 7708236--7708288 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
7708226 AGAAATGAGT
*
7708236 AAAAATAATATACATAATAATA
1 AAAAATATTATACATAATAATA
*
7708258 AGAAAATATTATA-ATAAATACTA
1 A-AAAATATTATACAT-AATAATA
7708281 AAAAATAT
1 AAAAATAT
7708289 CAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAAATATTATACATAATAATA
Found at i:7708763 original size:29 final size:30
Alignment explanation
Indices: 7708669--7708753 Score: 147
Period size: 30 Copynumber: 2.9 Consensus size: 30
7708659 TAAACCCCCC
*
7708669 AAAA-AAAAACCTAA-CAAAAAAAAAAGAA
1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA
7708697 AAAAGAAAAACCTAACCCAAAAAAAAAGAA
1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA
7708727 AAAAGAAAAACCTAACCCAAAAAAAAA
1 AAAAGAAAAACCTAACCCAAAAAAAAA
7708754 AACCAAGAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
28 4 0.07
29 10 0.19
30 40 0.74
ACGTcount: A:0.76, C:0.15, G:0.05, T:0.04
Consensus pattern (30 bp):
AAAAGAAAAACCTAACCCAAAAAAAAAGAA
Found at i:7709953 original size:18 final size:18
Alignment explanation
Indices: 7709930--7710006 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
7709920 TAAGCCCCCC
7709930 AAAAAAAAACCTAA-CCA
1 AAAAAAAAACCTAACCCA
*
7709947 AAAAAAAAA--GAA---A
1 AAAAAAAAACCTAACCCA
*
7709960 AAAGAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
7709978 AAAAAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
7709996 AAAAAAAAACC
1 AAAAAAAAACC
7710007 AAGAAACCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
13 9 0.18
15 4 0.08
17 9 0.18
18 29 0.57
ACGTcount: A:0.73, C:0.21, G:0.03, T:0.04
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCA
Found at i:7709970 original size:30 final size:30
Alignment explanation
Indices: 7709930--7709986 Score: 98
Period size: 31 Copynumber: 1.9 Consensus size: 30
7709920 TAAGCCCCCC
7709930 AAAAAAAAACCTAA-CCAAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCAAAAAAAAAAGAA
7709959 AAAAGAAAAACCTAACCCAAAAAAAAAA
1 AAAA-AAAAACCTAACCCAAAAAAAAAA
7709987 CCTAACCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 4 0.15
30 10 0.38
31 12 0.46
ACGTcount: A:0.77, C:0.16, G:0.04, T:0.04
Consensus pattern (30 bp):
AAAAAAAAACCTAACCCAAAAAAAAAAGAA
Found at i:7721241 original size:73 final size:71
Alignment explanation
Indices: 7721052--7721241 Score: 254
Period size: 72 Copynumber: 2.6 Consensus size: 71
7721042 AAGCCTTTTT
* * * *
7721052 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
1 ATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
*
7721117 ATTTTCA
65 AATTTCA
* **
7721124 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
1 ATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
7721189 AATTTCA
65 AATTTCA
* *
7721196 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
7721242 ACCTTTTAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.03
72 72 0.71
73 27 0.26
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTA
ATTTCA
Found at i:7721384 original size:72 final size:72
Alignment explanation
Indices: 7721259--7721692 Score: 532
Period size: 72 Copynumber: 6.0 Consensus size: 72
7721249 AATTTCTACT
** *
7721259 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCG
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
7721323 ATTTCTG
66 ATTTCTG
* * *
7721330 TTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACATGCTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
*
7721395 ATTTCTA
66 ATTTCTG
* **
7721402 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
7721467 ATTTCTG
66 ATTTCTG
** * *
7721474 TTTTCAAAATTCAACTCATATTGCGAGAAATGA-TTGAGCCTTGAGACACGTTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
7721538 ATTTCTG
66 ATTTCTG
* * ** * * *
7721545 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
7721609 TCAATTTCTG
63 TCAATTTCTG
* ** * * *
7721619 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTAT
1 T-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGCTGAGGTAA
7721684 TTTCAATTT
61 TTTCAATTT
7721693 TCGTTTTTCA
Statistics
Matches: 320, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
71 71 0.22
72 162 0.51
74 25 0.08
75 4 0.01
77 58 0.18
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:7721399 original size:199 final size:196
Alignment explanation
Indices: 7720883--7721659 Score: 763
Period size: 199 Copynumber: 3.9 Consensus size: 196
7720873 TCAAGGAAAC
* * *
7720883 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGT-TGTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT-TCTGTT
*
7720947 TTCAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGT-A-TT---TT
65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATT
* ** * *
7721006 T-AGTTTT--AAATTGACTCATATTGCGAGAAATGAGTT-AAGCCTTTTTATTT-TTGTTTTTCA
130 TCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAA-CCTTTTAATTTCTTCTTTTTCA
7721066 AAA
194 AAA
* ** * * * *
7721069 TCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGT-T
* * * *
7721134 TT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAAT
65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAAT
** * *
7721198 TTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
129 TTCTGTTT-TCAA-AATCAACTCATATTGCGAGAAATGAGTTGAACCTTTTAATTTCTTCTTTTT
7721263 CAAAA
192 CAAAA
** * *
7721268 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCGATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTT
* * * * *
7721333 TTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACATGCTGAGGTAATTTCAATT
66 TCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATT
*
7721398 TCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAAT
130 TCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAACCT---------TT----TAAT
7721463 TTCAATTTCTGTTTTCAAAA
181 TTC---TTCT-TTTTCAAAA
** *
7721483 TTCAACTCATATTGCGAGAAATGA-TTGAGCCTTGAGACACGTTGAGGTATTTTCAATTTCTGTT
1 -TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTT
* * * * *
7721547 TTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCA
65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG---ACACGCTGAGGTAATTTCA
**
7721612 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
127 ATTTCTGT-TTTC---AAAATCAACTCATATTGCGAGAAATGAGTTGA
7721660 GCCTCAGATC
Statistics
Matches: 489, Mismatches: 59, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
185 1 0.00
186 56 0.11
187 35 0.07
188 12 0.02
189 1 0.00
190 2 0.00
193 3 0.01
194 4 0.01
195 1 0.00
197 3 0.01
198 69 0.14
199 128 0.26
207 2 0.00
211 7 0.01
214 4 0.01
215 79 0.16
216 23 0.05
217 25 0.05
218 4 0.01
220 26 0.05
221 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (196 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTT
TCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTT
CTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTTTTAATTTCTTCTTTTTCAAA
A
Found at i:7721778 original size:93 final size:91
Alignment explanation
Indices: 7721606--7721785 Score: 252
Period size: 93 Copynumber: 2.0 Consensus size: 91
7721596 TGCTGAGGTA
*
7721606 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
7721671 CACGCCGAGGTATTTTCAATTTTCGT
66 CACGCCGAGCTATTTTCAATTTTCGT
* * ** *
7721697 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
** *
7721762 CACGTGCTGAGCTATTTTCAATTT
64 CACACGCCGAGCTATTTTCAATTT
7721786 CTGTCTTTCA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
91 18 0.23
93 59 0.77
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGCTATTTTCAATTTTCGT
Found at i:7721839 original size:170 final size:157
Alignment explanation
Indices: 7721260--7722304 Score: 723
Period size: 142 Copynumber: 6.9 Consensus size: 157
7721250 ATTTCTACTT
** ** * *
7721260 TTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACAC-GCTGAGGTAATTTCG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA
* * ** * * ** *
7721323 ATTTCTGT-TTT--TAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCA-A-GACATGCT
66 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC
* * *
7721383 GAGGTA------ATTTCAATTTCTA-T
131 GAGGTATTTTTTTTTTCAATTTATACC
* ** * * * *
7721403 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAG-ACACAT--TGAGGTAATTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCAC-TGCTGAGGTATTTT
* ** * * *
7721465 CAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGA-TTGAGCCT-TGA-GACACG
64 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACA
** * **
7721524 TTGAGGTA------TTTTCAATTTCT-GT
129 CCGAGGTATTTTTTTTTTCAATTTATACC
* *
7721546 TTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTTTC
*
7721611 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGC
65 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC
* *
7721676 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCC
130 CGAGGTA---T---TTTT--TTTTTCAATTTATACC
* * * *
7721712 TTTCAAAAAAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTAT
1 TTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTAT
*
7721777 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
61 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* **
7721842 ACACTGAGGTATTTTTTTTTTCAATTTATATT
126 ACACCGAGGTATTTTTTTTTTCAATTTATACC
** *
7721874 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC-GCTGAGGTAATTTCA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA
* * * ** * *
7721938 ATTTTTGT-TTTC--AAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTC-G-GGACACGCT
66 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC
* * *
7721998 GAGGTA------ATTTCAATCTGT---
131 GAGGTATTTTTTTTTTCAATTTATACC
* ** * * *
7722016 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC-GCTGAGGTAATTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACTGCTGAGGTATTTTC
* ** * ***
7722079 AATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACATGT
65 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC
* * * **
7722139 TGAAGTA------TTTTCAATTTCT-GT
130 CGAGGTATTTTTTTTTTCAATTTATACC
* * *
7722160 TTTCAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTT
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTT
*
7722225 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
63 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
* *
7722290 ACTGTGGTATTTTTT
128 ACCGAGGTATTTTTT
7722305 CAATTTATAT
Statistics
Matches: 755, Mismatches: 91, Indels: 96
0.80 0.10 0.10
Matches are distributed among these distances:
142 123 0.16
143 79 0.10
144 94 0.12
145 31 0.04
146 40 0.05
148 47 0.06
149 12 0.02
150 2 0.00
151 58 0.08
152 2 0.00
153 43 0.06
155 4 0.01
156 20 0.03
158 40 0.05
162 16 0.02
164 4 0.01
165 12 0.02
166 4 0.01
167 1 0.00
170 123 0.16
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (157 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC
GAGGTATTTTTTTTTTCAATTTATACC
Found at i:7721976 original size:72 final size:72
Alignment explanation
Indices: 7721720--7722277 Score: 598
Period size: 72 Copynumber: 7.5 Consensus size: 72
7721710 CCTTTCAAAA
* * * ** *
7721720 AAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAATT
7721785 TCTGTCTTTC
64 TCTGT-TTTC
* ** *
7721795 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA------T
* *
7721860 TTTCAATTTATATTTTTC
56 TTTCAATTTCT-GTTTTC
* *
7721878 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
7721943 TGTTTTC
66 TGTTTTC
* * *
7721950 AAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGACACGCTGAGGTAATTTCAA--TC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
7722013 TGTTTTC
66 TGTTTTC
* ** ** *
7722020 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
7722085 TGTTTTC
66 TGTTTTC
* ** ** * * *
7722092 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAAGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
7722157 TGTTTTC
66 TGTTTTC
* * * *
7722164 AAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAA
7722229 TTTCTGTCTTTC
62 TTTCTGT-TTTC
7722241 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
7722278 TTCAGATCAC
Statistics
Matches: 422, Mismatches: 43, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
70 62 0.15
72 141 0.33
73 10 0.02
74 33 0.08
76 25 0.06
77 80 0.19
78 1 0.00
79 16 0.04
80 1 0.00
81 37 0.09
83 15 0.04
84 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTTC
Found at i:7722307 original size:214 final size:207
Alignment explanation
Indices: 7721872--7722293 Score: 484
Period size: 214 Copynumber: 2.0 Consensus size: 207
7721862 TCAATTTATA
** ** *
7721872 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTTC
* * *
7721937 AATTTTTGTTTTCAAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGACACGCTGAGG
66 AATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGGCACACGCTGAGG
* * *
7722002 TAATTTCAATCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
131 TAATTTCAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC
7722067 TGAGGTAATTTCAATTTC
196 TGAGG----TT-AA-TTC
* * * *
7722085 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAAGTATTTT
1 T-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTT
* * *
7722150 CAATTTCTGTTTTCAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGC
65 CAATTTCTGTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGG--CACACGC
* ** *
7722215 TGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT
126 TGAGGTAATTTCAA--TCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
7722280 CAGATCACACACTG
186 CA-A-CACACACTG
7722294 TGGTATTTTT
Statistics
Matches: 175, Mismatches: 22, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
213 1 0.01
214 67 0.38
216 37 0.21
218 18 0.10
220 5 0.03
221 4 0.02
223 35 0.20
224 1 0.01
225 7 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (207 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTTC
AATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGGCACACGCTGAGG
TAATTTCAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC
TGAGGTTAATTC
Found at i:7723183 original size:28 final size:28
Alignment explanation
Indices: 7723144--7723198 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
7723134 TAAGCCCCCC
7723144 AAAAAAAAAACCTAA-CCAAAAAAAAAG
1 AAAAAAAAAACCTAACCCAAAAAAAAAG
7723171 AAAAAGAAAAACCTAACCCAAAAAAAAA
1 AAAAA-AAAAACCTAACCCAAAAAAAAA
7723199 AACCTAACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.19
28 10 0.38
29 11 0.42
ACGTcount: A:0.76, C:0.16, G:0.04, T:0.04
Consensus pattern (28 bp):
AAAAAAAAAACCTAACCCAAAAAAAAAG
Found at i:7723199 original size:19 final size:19
Alignment explanation
Indices: 7723171--7723221 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
7723161 AAAAAAAAAG
*
7723171 AAAAAGAAAAACCTAACCC
1 AAAAAAAAAAACCTAACCC
7723190 AAAAAAAAAAACCTAACCC
1 AAAAAAAAAAACCTAACCC
7723209 AAAAAAAAAAACC
1 AAAAAAAAAAACC
7723222 AAGAAACCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.71, C:0.24, G:0.02, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAAACCTAACCC
Found at i:7729052 original size:22 final size:20
Alignment explanation
Indices: 7729027--7729068 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7729017 ATTATTTTTC
7729027 TCATACAAAATGATTAAAAAAA
1 TCATA-AAAATGA-TAAAAAAA
*
7729049 TCATAAAAATTATAAAAAAA
1 TCATAAAAATGATAAAAAAA
7729069 GAAAATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (20 bp):
TCATAAAAATGATAAAAAAA
Found at i:7729926 original size:30 final size:29
Alignment explanation
Indices: 7729883--7729943 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
7729873 TTTTATGATT
*
7729883 TTTTTATAACTTTT-TGTAATTTTATATAAA
1 TTTTAATAACTTTTATG-AATTTTATA-AAA
* *
7729913 TTTTAATACCTTTTATGATTTTTATAAAA
1 TTTTAATAACTTTTATGAATTTTATAAAA
7729942 TT
1 TT
7729944 ATAAAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.19
30 20 0.74
31 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTAATAACTTTTATGAATTTTATAAAA
Found at i:7729955 original size:21 final size:23
Alignment explanation
Indices: 7729930--7729978 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
7729920 ACCTTTTATG
7729930 ATTTTTAT-AAAATTATAAA-AT
1 ATTTTTATAAAAATTATAAATAT
*
7729951 ATTTTTATAAAAATTTTAAATAT
1 ATTTTTATAAAAATTATAAATAT
7729974 ATTTT
1 ATTTT
7729979 ATTAATTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 8 0.32
22 10 0.40
23 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTTTTATAAAAATTATAAATAT
Found at i:7732635 original size:24 final size:24
Alignment explanation
Indices: 7732587--7732643 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
7732577 AATAAAAAAC
*
7732587 AATAGTAATAATACTAAGATCAGT
1 AATAGTAATAATACTAAGATAAGT
7732611 AATAGTAATAATTA-TAATGA-AAGT
1 AATAGTAATAA-TACTAA-GATAAGT
7732635 AA-AGTAATA
1 AATAGTAATA
7732644 CTAAATACGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 7 0.23
24 19 0.63
25 4 0.13
ACGTcount: A:0.54, C:0.04, G:0.12, T:0.30
Consensus pattern (24 bp):
AATAGTAATAATACTAAGATAAGT
Found at i:7732797 original size:24 final size:24
Alignment explanation
Indices: 7732770--7732835 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 24
7732760 ATAGTTAAAA
*
7732770 ATACTACTATATGAAT-ACATATAT
1 ATACTACTATAT-AATAAAATATAT
7732794 ATAC-A-TATATAATAAAATATAT
1 ATACTACTATATAATAAAATATAT
7732816 ATA-TACTA-ATAATAATAATA
1 ATACTACTATATAATAA-AATA
7732836 ATAATAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
21 3 0.08
22 23 0.62
23 7 0.19
24 4 0.11
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (24 bp):
ATACTACTATATAATAAAATATAT
Found at i:7732830 original size:3 final size:3
Alignment explanation
Indices: 7732802--7732880 Score: 106
Period size: 3 Copynumber: 26.0 Consensus size: 3
7732792 ATATACATAT
*
7732802 ATA ATA A-A ATA TATA TATA CTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
7732848 ATA ATA ATA ATA ATA ATA ATA AGA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7732881 TTGAAATCCA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
2 2 0.03
3 59 0.87
4 7 0.10
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7732942 original size:26 final size:28
Alignment explanation
Indices: 7732891--7732942 Score: 65
Period size: 26 Copynumber: 1.9 Consensus size: 28
7732881 TTGAAATCCA
*
7732891 AAAAGTAAATATAATATATAAAAATATT
1 AAAAGTAAATATAATATAGAAAAATATT
7732919 AAAA-TAAA-ATAAT-TAGAAACAATA
1 AAAAGTAAATATAATATAGAAA-AATA
7732943 CTATACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 5 0.23
26 9 0.41
27 4 0.18
28 4 0.18
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (28 bp):
AAAAGTAAATATAATATAGAAAAATATT
Found at i:7733035 original size:3 final size:3
Alignment explanation
Indices: 7733027--7733066 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
7733017 AAATAGGTAA
* * *
7733027 AAT AAT AAT AGT AAA AAT AAT AAT AAT AAA AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7733067 TGTGAAGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7733036 original size:15 final size:15
Alignment explanation
Indices: 7733025--7733066 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
7733015 AAAAATAGGT
7733025 AAAATAATAATAGTA
1 AAAATAATAATAGTA
*
7733040 AAAATAATAATAATA
1 AAAATAATAATAGTA
7733055 AAAATAATAATA
1 AAAATAATAATA
7733067 TGTGAAGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (15 bp):
AAAATAATAATAGTA
Found at i:7733054 original size:24 final size:24
Alignment explanation
Indices: 7733013--7733060 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7733003 TATAATAGGG
* *
7733013 GTAAAAATAGGTAAAATAATAATA
1 GTAAAAATAGATAAAATAAAAATA
7733037 GTAAAAATA-ATAATAATAAAAATA
1 GTAAAAATAGATAA-AATAAAAATA
7733061 ATAATATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (24 bp):
GTAAAAATAGATAAAATAAAAATA
Found at i:7733433 original size:31 final size:30
Alignment explanation
Indices: 7733370--7733433 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
7733360 TAAAAGTGAT
* **
7733370 AAAATAACAAATATTTAATTGAAGATATTA
1 AAAACAACAAATATTTAAAAGAAGATATTA
7733400 AAAACAACAAATATTTAGAAAGTAAG-TATTA
1 AAAACAACAAATATTTA-AAAG-AAGATATTA
7733431 AAA
1 AAA
7733434 TCCTTAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 16 0.55
31 10 0.34
32 3 0.10
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (30 bp):
AAAACAACAAATATTTAAAAGAAGATATTA
Found at i:7737068 original size:26 final size:26
Alignment explanation
Indices: 7736996--7737078 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
7736986 TGATACAAAT
* * *
7736996 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7737022 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7737048 TGATAATGGGTTAGGTAAATGTTT-A
1 TGATAATGGGTTAGGTAAATGTTTCA
7737073 TGATAA
1 TGATAA
7737079 GAATTTATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 7 0.13
26 47 0.87
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7741340 original size:24 final size:26
Alignment explanation
Indices: 7741304--7741352 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
7741294 TCAAACATGC
7741304 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
7741329 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
7741353 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:7742871 original size:26 final size:26
Alignment explanation
Indices: 7742835--7742944 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
7742825 ACATGAATTC
7742835 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7742861 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7742887 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
7742913 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7742939 TTATCA
1 TTATCA
7742945 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7744417 original size:13 final size:13
Alignment explanation
Indices: 7744399--7744425 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7744389 TAATATAAAT
7744399 AGACATATATCCA
1 AGACATATATCCA
7744412 AGACATATATCCA
1 AGACATATATCCA
7744425 A
1 A
7744426 TCCACCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (13 bp):
AGACATATATCCA
Found at i:7746259 original size:7 final size:7
Alignment explanation
Indices: 7746247--7746278 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
7746237 GCTTCCACGT
7746247 GAACTTG
1 GAACTTG
7746254 GAACTTG
1 GAACTTG
7746261 GAACTTG
1 GAACTTG
7746268 GAACTTG
1 GAACTTG
7746275 GAAC
1 GAAC
7746279 CAGCTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (7 bp):
GAACTTG
Found at i:7747691 original size:12 final size:12
Alignment explanation
Indices: 7747674--7747698 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7747664 AATGATGTAA
7747674 AATAAATAAATG
1 AATAAATAAATG
7747686 AATAAATAAATG
1 AATAAATAAATG
7747698 A
1 A
7747699 TATGCAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
AATAAATAAATG
Found at i:7747868 original size:18 final size:18
Alignment explanation
Indices: 7747839--7747881 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7747829 AATAATAGCA
* *
7747839 AATAAAAATAGTGCTAAT
1 AATAATAATAGTGATAAT
*
7747857 AGTAATAATAGTGATAAT
1 AATAATAATAGTGATAAT
7747875 AATAATA
1 AATAATA
7747882 GTATGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (18 bp):
AATAATAATAGTGATAAT
Found at i:7747934 original size:26 final size:25
Alignment explanation
Indices: 7747905--7747963 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
7747895 AACAATAGTA
7747905 AAATAAT-GATATTAATACCTAAATAT
1 AAATAATAGATA-TAATACCTAAA-AT
*
7747931 AAAT-ATAGATATAATATCTAAAAT
1 AAATAATAGATATAATACCTAAAAT
7747955 ATAATAATA
1 A-AATAATA
7747964 ATGAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (25 bp):
AAATAATAGATATAATACCTAAAAT
Found at i:7747993 original size:17 final size:18
Alignment explanation
Indices: 7747950--7747995 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
7747940 TATAATATCT
7747950 AAAATAT-AATAATAATG
1 AAAATATAAATAATAATG
7747967 AAAATATAAATACATAA-G
1 AAAATATAAATA-ATAATG
7747985 -AAATATAAATA
1 AAAATATAAATA
7747996 GATGAGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 18 0.67
18 5 0.19
19 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATATAAATAATAATG
Found at i:7748550 original size:3 final size:3
Alignment explanation
Indices: 7748544--7748605 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
7748534 TAAAAAGAAG
7748544 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7748592 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
7748606 GTGAGTAGAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7760640 original size:28 final size:27
Alignment explanation
Indices: 7760588--7760693 Score: 72
Period size: 28 Copynumber: 3.7 Consensus size: 27
7760578 CTATTCAGAA
* *
7760588 ATCAGTGTTAA-CTAGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
*
7760615 ATCAGTATTAATCTGGGCCATAGCCCCT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
**
7760643 -TACAGTAACAGAGTATACTGGGCCTAGCCCAT
1 AT-CAGT-A-TTA--AT-CTGGGCCTAGCCCAT
*
7760675 ATCAGTATCAATCTGGGCC
1 ATCAGTATTAATCTGGGCC
7760694 GTAACCCTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
27 18 0.29
28 19 0.31
29 1 0.02
30 2 0.03
31 1 0.02
32 13 0.21
33 8 0.13
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:7760725 original size:60 final size:59
Alignment explanation
Indices: 7760602--7760736 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
7760592 GTGTTAACTA
* * *
7760602 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAACCCATTACAGT-ACAGAGTATACTG
* *
7760663 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAACCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAACCC-ATTAC-AGTACAGAG-TATACTG
*
7760723 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
7760737 TAACATAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAACCCATTACAGTACAGAGTATACTG
Found at i:7762105 original size:17 final size:19
Alignment explanation
Indices: 7762083--7762121 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7762073 TGAGAGAAAG
*
7762083 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
7762100 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
7762119 ATA
1 ATA
7762122 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:7774150 original size:50 final size:50
Alignment explanation
Indices: 7774075--7774177 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
7774065 CTAAAACCAC
7774075 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA
1 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA
7774125 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA
1 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA
7774175 ATT
1 ATT
7774178 TAGAGCTAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (50 bp):
ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA
Found at i:7777886 original size:26 final size:26
Alignment explanation
Indices: 7777847--7777982 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
7777837 TGATACAAAT
* * *
7777847 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7777873 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
7777899 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7777925 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7777951 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7777977 TGATAA
1 TGATAA
7777983 GAATATCATG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7779648 original size:27 final size:27
Alignment explanation
Indices: 7779607--7779745 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
7779597 GAGGAAGCGT
*
7779607 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
7779634 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
7779661 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
7779688 TCTGGTGGCTCTG-CACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
7779715 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
7779741 TCTGG
1 TCTGG
7779746 CAGCTATGCT
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.14
27 84 0.83
28 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:7779692 original size:54 final size:54
Alignment explanation
Indices: 7779607--7779745 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
7779597 GAGGAAGCGT
* * *
7779607 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTG-CACAAATATCTGTA
* *
7779661 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACAAATATCTGTA
* *
7779715 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
7779746 CAGCTATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 22 0.29
54 55 0.71
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACAAATATCTGTA
Found at i:7780987 original size:10 final size:10
Alignment explanation
Indices: 7780960--7781007 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
7780950 TTAAATTCTA
*
7780960 AAAGATAAAT
1 AAAGATAATT
7780970 ACAA-ATAATT
1 A-AAGATAATT
7780980 AAAGATAATT
1 AAAGATAATT
*
7780990 AAAGATAATA
1 AAAGATAATT
7781000 AAAGATAA
1 AAAGATAA
7781008 ATGAAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAGATAATT
Found at i:7781017 original size:20 final size:19
Alignment explanation
Indices: 7780958--7781017 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
7780948 AATTAAATTC
7780958 TAAAAGATAAATACAAATAA
1 TAAAAGATAAATA-AAATAA
* *
7780978 TTAAAGATAATTAAAGATAA
1 TAAAAGATAAATAAA-ATAA
7780998 TAAAAGATAAATGAAAATAA
1 TAAAAGATAAAT-AAAATAA
7781018 ATCCTAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.85
21 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (19 bp):
TAAAAGATAAATAAAATAA
Found at i:7781619 original size:11 final size:11
Alignment explanation
Indices: 7781605--7781643 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7781595 TTTTCTTCTT
7781605 TTTTTAATTAA
1 TTTTTAATTAA
7781616 TTTTTAATTAA
1 TTTTTAATTAA
* *
7781627 TTAATTAATTTA
1 TT-TTTAATTAA
7781639 TTTTT
1 TTTTT
7781644 GCTTAGGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTAATTAA
Found at i:7782890 original size:5 final size:5
Alignment explanation
Indices: 7782880--7782947 Score: 70
Period size: 5 Copynumber: 13.4 Consensus size: 5
7782870 AGTAATAAAT
*
7782880 AATAA AATAA AATAA AAT-A AATAA TAA-AT AATAA AATAA AATAA AA-ATA
1 AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATA-A
7782929 AATAAA AATAAA AATAA AA
1 AAT-AA AAT-AA AATAA AA
7782948 ATTGGGTTGC
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
4 7 0.13
5 35 0.64
6 12 0.22
7 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:7782908 original size:29 final size:30
Alignment explanation
Indices: 7782863--7782947 Score: 133
Period size: 29 Copynumber: 2.9 Consensus size: 30
7782853 TCACCCAAAC
7782863 AAAATAAAGTAATAAATAATAAAATAAAAT-
1 AAAATAAA-TAATAAATAATAAAATAAAATA
7782893 AAAATAAATAATAAATAATAAAATAAAATA
1 AAAATAAATAATAAATAATAAAATAAAATA
7782923 AAAATAAATAA-AAAT-A-AAAATAAAA
1 AAAATAAATAATAAATAATAAAATAAAA
7782948 ATTGGGTTGC
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
27 9 0.17
28 1 0.02
29 25 0.46
30 19 0.35
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21
Consensus pattern (30 bp):
AAAATAAATAATAAATAATAAAATAAAATA
Found at i:7786971 original size:131 final size:130
Alignment explanation
Indices: 7786810--7787146 Score: 559
Period size: 131 Copynumber: 2.6 Consensus size: 130
7786800 TAATTATTCA
*
7786810 TTTAAAAATTCTTAAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGG-AATCGTGCCCTATC
* * * *
7786875 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATTGATTATTCCTTTGGGATTTCATTCATGT
65 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT
7786940 C
130 C
7786941 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCAGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATC
*
7787006 GTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT
65 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT
7787071 C
130 C
* *
7787072 TTTAAAAATTCTTTAAAATGAAGGAAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTA-C
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATC
7787136 TGTGCTGGGTT
65 -GTGCTGGGTT
7787147 TCAATTTTTT
Statistics
Matches: 195, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
130 2 0.01
131 190 0.97
132 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGTC
Found at i:7796900 original size:21 final size:21
Alignment explanation
Indices: 7796876--7796932 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
7796866 GACACATAAA
7796876 GTGCCTAAAACGAAACACGAG
1 GTGCCTAAAACGAAACACGAG
* * *
7796897 GTGCCTGATACGACACACGAG
1 GTGCCTAAAACGAAACACGAG
7796918 GTGCCTGAAATACGA
1 GTGCCT-AAA-ACGA
7796933 TACATAAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 24 0.83
22 1 0.03
23 4 0.14
ACGTcount: A:0.35, C:0.25, G:0.26, T:0.14
Consensus pattern (21 bp):
GTGCCTAAAACGAAACACGAG
Found at i:7797344 original size:15 final size:15
Alignment explanation
Indices: 7797319--7797376 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
7797309 TCATATATAT
7797319 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
7797335 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
7797350 AATAATTTCAATCAA
1 TATAAATTCAATCAA
7797365 TATAAATTCAAT
1 TATAAATTCAAT
7797377 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:7798659 original size:5 final size:5
Alignment explanation
Indices: 7798646--7798718 Score: 128
Period size: 5 Copynumber: 14.2 Consensus size: 5
7798636 TTCTTTAGTT
7798646 TATATA TATAA TATAA TATATA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATAA
7798698 TATAA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TATAA T
7798719 TAAAACATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
5 57 0.86
6 9 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:7798754 original size:8 final size:8
Alignment explanation
Indices: 7798741--7798769 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7798731 TATCTTTATT
7798741 ATATAATA
1 ATATAATA
7798749 ATATAATA
1 ATATAATA
7798757 ATATAATA
1 ATATAATA
7798765 ATATA
1 ATATA
7798770 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:7802669 original size:5 final size:5
Alignment explanation
Indices: 7802659--7802690 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7802649 TTACTGTGAA
7802659 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7802691 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7802684 original size:9 final size:9
Alignment explanation
Indices: 7802660--7802690 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7802650 TACTGTGAAA
7802660 AAATAAAAT
1 AAATAAAAT
7802669 AAAATAAAAT
1 -AAATAAAAT
7802679 AAATAAAAT
1 AAATAAAAT
7802688 AAA
1 AAA
7802691 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7807227 original size:19 final size:19
Alignment explanation
Indices: 7807182--7807227 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
7807172 AATAAATAAA
*
7807182 AAATTTATATTATTTAATT
1 AAATTTATATTATTAAATT
7807201 ATAA-TTATATT-TTAAAATT
1 A-AATTTATATTATT-AAATT
7807220 AAATTTAT
1 AAATTTAT
7807228 GCCCTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 4 0.17
19 17 0.74
20 2 0.09
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AAATTTATATTATTAAATT
Found at i:7807464 original size:62 final size:62
Alignment explanation
Indices: 7807366--7807488 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 62
7807356 AGATGTTGGG
* * *
7807366 CACGAGTTTTAAAGTTGCTTCATGCACAAAGTGAGGATCAAACACTCGGTGAGGATCAAACC
1 CACGAGTTTTAAAGTTGCTTCATGCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAACC
* *
7807428 CACGAGTTTTAAAGTTGCTTCATATC-CAAGGCGAGGATCAAACACTCGGCGAAGATCAAAC
1 CACGAGTTTTAAAGTTGCTTCAT-GCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAAC
7807489 TCTCAACCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
62 54 0.98
63 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (62 bp):
CACGAGTTTTAAAGTTGCTTCATGCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAACC
Found at i:7811560 original size:13 final size:15
Alignment explanation
Indices: 7811525--7811564 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
7811515 AAACCCATCT
7811525 ATAACCC-AACCTCA
1 ATAACCCAAACCTCA
7811539 ATAACCCAAACC-CA
1 ATAACCCAAACCTCA
7811553 AT-ACCCAAACCT
1 ATAACCCAAACCT
7811565 ACCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.38
14 11 0.46
15 4 0.17
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12
Consensus pattern (15 bp):
ATAACCCAAACCTCA
Found at i:7812167 original size:11 final size:11
Alignment explanation
Indices: 7812151--7812195 Score: 90
Period size: 11 Copynumber: 4.1 Consensus size: 11
7812141 TCCCTTCCCC
7812151 CCTTCTCTCTT
1 CCTTCTCTCTT
7812162 CCTTCTCTCTT
1 CCTTCTCTCTT
7812173 CCTTCTCTCTT
1 CCTTCTCTCTT
7812184 CCTTCTCTCTT
1 CCTTCTCTCTT
7812195 C
1 C
7812196 TTTTTTTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:7812615 original size:20 final size:17
Alignment explanation
Indices: 7812590--7812642 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 17
7812580 TTCTTTATTA
7812590 AATATTGTTATTATTATTC
1 AATATT-TTATTATTA-TC
*
7812609 TAATATTATTAATATTATC
1 -AATATT-TTATTATTATC
7812628 AATATATTTATTATT
1 AATAT-TTTATTATT
7812643 TTTAGTGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 12 0.41
19 3 0.10
20 14 0.48
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (17 bp):
AATATTTTATTATTATC
Found at i:7812803 original size:22 final size:22
Alignment explanation
Indices: 7812761--7812842 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 22
7812751 AATACTAGTG
*
7812761 TATATTTTATTATGTATGTATA
1 TATATTTTATTATATATGTATA
*
7812783 TATATTCTTTTTATATA-GTAT-
1 TATATT-TTATTATATATGTATA
* *
7812804 TATCGTTTCTATTATTATATCTATA
1 TAT-ATTT-TATTA-TATATGTATA
*
7812829 TTTATGTTTATTAT
1 TATAT-TTTATTAT
7812843 TTTCACTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
21 4 0.09
22 16 0.35
23 13 0.28
24 9 0.20
25 4 0.09
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61
Consensus pattern (22 bp):
TATATTTTATTATATATGTATA
Found at i:7813051 original size:21 final size:21
Alignment explanation
Indices: 7813020--7813074 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
7813010 TAAATATTAT
*
7813020 ATTTTCTATATATTATGTATAC
1 ATTTT-TATATATTACGTATAC
*
7813042 ATTTTTATATATTACGTATAT
1 ATTTTTATATATTACGTATAC
*
7813063 ATCTTTA-ATATT
1 ATTTTTATATATT
7813075 GCACTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 5 0.17
21 20 0.67
22 5 0.17
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (21 bp):
ATTTTTATATATTACGTATAC
Found at i:7816651 original size:26 final size:24
Alignment explanation
Indices: 7816620--7816715 Score: 79
Period size: 24 Copynumber: 3.9 Consensus size: 24
7816610 GTTAAAAATG
7816620 AATTGACTTCGGCACTATGTGTGCAA
1 AATTGA-TT-GGCACTATGTGTGCAA
* * * *
7816646 ATTTGAATGGCACTGTGTGTACAA
1 AATTGATTGGCACTATGTGTGCAA
*
7816670 AATTG-TATGGCACTATGTGTGCAG
1 AATTGAT-TGGCACTATGTGTGCAA
* *
7816694 ACTTG-TATAGCACTATGTGTGC
1 AATTGAT-TGGCACTATGTGTGC
7816716 GGATTTAAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
24 52 0.90
25 1 0.02
26 5 0.09
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (24 bp):
AATTGATTGGCACTATGTGTGCAA
Found at i:7816657 original size:24 final size:24
Alignment explanation
Indices: 7816630--7816715 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
7816620 AATTGACTTC
* *
7816630 GGCACTATGTGTGCAAATTTGAAT
1 GGCACTATGTGTGCAAAATTGTAT
* *
7816654 GGCACTGTGTGTACAAAATTGTAT
1 GGCACTATGTGTGCAAAATTGTAT
* *
7816678 GGCACTATGTGTGCAGACTTGTAT
1 GGCACTATGTGTGCAAAATTGTAT
*
7816702 AGCACTATGTGTGC
1 GGCACTATGTGTGC
7816716 GGATTTAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCAAAATTGTAT
Found at i:7826208 original size:40 final size:39
Alignment explanation
Indices: 7826159--7826236 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
7826149 ATGCTTGAAG
* *
7826159 AAAAGAAAATCAAGATGAAAACCTGAAAAAGGGCATCTTA
1 AAAAAAAAATCAAGATGAAAACCCG-AAAAGGGCATCTTA
* *
7826199 AAAAAAAAATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAAAAATCAAGATGAAAACCCGAAAAGGGCATCTT
7826237 GATTAACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 12 0.35
40 22 0.65
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (39 bp):
AAAAAAAAATCAAGATGAAAACCCGAAAAGGGCATCTTA
Found at i:7827283 original size:88 final size:87
Alignment explanation
Indices: 7827118--7827359 Score: 205
Period size: 84 Copynumber: 2.8 Consensus size: 87
7827108 TTACTGTTTG
* * * * * *
7827118 TCAAAAAAAATTCAAATCATATTGCGAGAAGTAAGTTAAGCCTCGGGACACGCTGAGGTATTCTC
1 TCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGCTATTCTC
7827183 AATTTCTGC-TTTTAAT-TCATGTCT
65 AATTTC-GCTTTTTAATGTC-TGT-T
* * *
7827207 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCGCGTGCTGAGCTACTTC
1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACAC--GCTGAGCTA-TTC
*
7827272 -CAATTTC-CTTTTTGATGTCTGTT
63 TCAATTTCGCTTTTTAATGTCTGTT
** * * * *
7827295 T----TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTC
1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGCTATTCTC
7827355 AATTT
65 AATTT
7827360 ATATTTTTCA
Statistics
Matches: 127, Mismatches: 19, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
81 2 0.02
82 13 0.10
84 37 0.29
85 1 0.01
88 35 0.28
89 19 0.15
90 17 0.13
91 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (87 bp):
TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGCTATTCTCA
ATTTCGCTTTTTAATGTCTGTT
Found at i:7827647 original size:15 final size:15
Alignment explanation
Indices: 7827627--7827656 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7827617 ATATTTTCAG
*
7827627 TTTCTGTTTTTCAAA
1 TTTCTGTTTGTCAAA
7827642 TTTCTGTTTGTCAAA
1 TTTCTGTTTGTCAAA
7827657 AGTCAACTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.13, G:0.10, T:0.57
Consensus pattern (15 bp):
TTTCTGTTTGTCAAA
Found at i:7827663 original size:90 final size:85
Alignment explanation
Indices: 7827444--7827728 Score: 252
Period size: 90 Copynumber: 3.2 Consensus size: 85
7827434 ATTCTGTTGC
* * *
7827444 TCAAATTCTGTTTTT-AATTTCTATTTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTTAG
1 TCAATTTCTGTTTTTCAATTTC--TGTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
7827508 CCTCAGGACACGCTGAGGTAATT
63 CCTCAGGACACGCTGAGATAATT
* *
7827531 TCAATTTCTGTTTCTCAATTTTTGCTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TCAATTTCTGTTTTTCAATTTCTG-TTTTC----AAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * *
7827596 GGCCT-TGGCTCATATGCTGAGATATTT
61 AGCCTCAGG---ACACGCTGAGATAATT
* *
7827623 TCAGTTTCTGTTTTTCAAATTTCTGTTTGTCAAAAGTCAACTCATATTACGAGAGGTGAGTTGAG
1 TCAATTTCTGTTTTTC-AATTTCTGTTT-TCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
7827688 CCTCAGAACACGCTAAGGT-ATT
63 CCTCAGGACACGCTGAGATAATT
* *
7827710 TTAAGTTTCTGTTTGTCAA
1 TCAA-TTTCTGTTTTTCAA
7827729 GAATCAACTC
Statistics
Matches: 158, Mismatches: 26, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
86 2 0.01
87 23 0.15
88 24 0.15
89 6 0.04
90 64 0.41
91 1 0.01
92 29 0.18
93 9 0.06
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (85 bp):
TCAATTTCTGTTTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAGGACACGCTGAGATAATT
Found at i:7828469 original size:13 final size:15
Alignment explanation
Indices: 7828434--7828473 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
7828424 AAACCCATCT
7828434 ATAACCC-AACCTCA
1 ATAACCCAAACCTCA
7828448 ATAACCCAAACC-CA
1 ATAACCCAAACCTCA
7828462 AT-ACCCAAACCT
1 ATAACCCAAACCT
7828474 ACCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.38
14 11 0.46
15 4 0.17
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12
Consensus pattern (15 bp):
ATAACCCAAACCTCA
Found at i:7829081 original size:11 final size:11
Alignment explanation
Indices: 7829049--7829082 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
7829039 TCCCTTCCCC
*
7829049 CCTTCTCTCTC
1 CCTTCTCTCTT
7829060 CCTTCTCTCTT
1 CCTTCTCTCTT
7829071 CCTTCTCTCTT
1 CCTTCTCTCTT
7829082 C
1 C
7829083 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:7829503 original size:20 final size:17
Alignment explanation
Indices: 7829478--7829530 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 17
7829468 TTCTTTATTA
7829478 AATATTGTTATTATTATTC
1 AATATT-TTATTATTA-TC
*
7829497 TAATATTATTAATATTATC
1 -AATATT-TTATTATTATC
7829516 AATATATTTATTATT
1 AATAT-TTTATTATT
7829531 TTTAGTGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 12 0.41
19 3 0.10
20 14 0.48
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (17 bp):
AATATTTTATTATTATC
Found at i:7829695 original size:22 final size:22
Alignment explanation
Indices: 7829653--7829734 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 22
7829643 AATATTAGTG
*
7829653 TATATTTTATTATGTATGTATA
1 TATATTTTATTATATATGTATA
*
7829675 TATATTCTTTTTATATA-GTAT-
1 TATATT-TTATTATATATGTATA
* *
7829696 TATCGTTTCTATTATTATATCTATA
1 TAT-ATTT-TATTA-TATATGTATA
*
7829721 TTTATGTTTATTAT
1 TATAT-TTTATTAT
7829735 TTTCACTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
21 4 0.09
22 16 0.35
23 13 0.28
24 9 0.20
25 4 0.09
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61
Consensus pattern (22 bp):
TATATTTTATTATATATGTATA
Found at i:7829945 original size:22 final size:22
Alignment explanation
Indices: 7829919--7829961 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7829909 TAAATATTAT
* *
7829919 ATTTTCTGTATATTATGTATAC
1 ATTTTCTATATATTACGTATAC
*
7829941 ATTTTTTATATATTACGTATA
1 ATTTTCTATATATTACGTATA
7829962 TATCTTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTTTCTATATATTACGTATAC
Found at i:7829973 original size:22 final size:22
Alignment explanation
Indices: 7829927--7829973 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7829917 ATATTTTCTG
* * *
7829927 TATATTATGTATACATTTTTTA
1 TATATTACGTATACATCTTTAA
*
7829949 TATATTACGTATATATCTTTAA
1 TATATTACGTATACATCTTTAA
7829971 TAT
1 TAT
7829974 TGCACTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (22 bp):
TATATTACGTATACATCTTTAA
Found at i:7835866 original size:19 final size:19
Alignment explanation
Indices: 7835844--7835932 Score: 56
Period size: 19 Copynumber: 4.3 Consensus size: 19
7835834 TAATAATAAT
7835844 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
7835863 ATAAAATACATATATATATATATGC
1 ATAAAAT--A-ATA-ATATGTA--C
*
7835888 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
7835906 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
7835926 AATAAAA
1 -ATAAAA
7835933 GAAAATATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 21
0.68 0.06 0.26
Matches are distributed among these distances:
18 3 0.06
19 17 0.31
20 5 0.09
21 11 0.20
22 4 0.07
23 7 0.13
25 7 0.13
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:7836220 original size:39 final size:37
Alignment explanation
Indices: 7836123--7836220 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
7836113 TATGGTATTT
* * * *
7836123 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
7836159 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
7836198 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
7836221 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:7836716 original size:27 final size:30
Alignment explanation
Indices: 7836685--7836748 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
7836675 TGGTTAGGTG
7836685 GTTAGGGTTTTT-TTTTTT-TT-TTTTTTT
1 GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT
7836712 GTTA-GGTTTTTCTTTTTTCTTCTTTTTTT
1 GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT
*
7836741 -TTTGGGTT
1 GTTAGGGTT
7836749 AGGTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.22
27 10 0.31
28 4 0.12
29 11 0.34
ACGTcount: A:0.03, C:0.05, G:0.16, T:0.77
Consensus pattern (30 bp):
GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT
Found at i:7836743 original size:34 final size:32
Alignment explanation
Indices: 7836692--7836756 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
7836682 GTGGTTAGGG
**
7836692 TTTTTTTTTTTTTTTTTTTTGTTAGGTTTTTC
1 TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTC
7836724 TTTTTTCTTCTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTT-TT-TTTTTTTTTTGGGTTAGGTTTTT
7836757 TTTGGGGGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 6 0.21
33 2 0.07
34 21 0.72
ACGTcount: A:0.03, C:0.05, G:0.12, T:0.80
Consensus pattern (32 bp):
TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTC
Found at i:7837806 original size:74 final size:74
Alignment explanation
Indices: 7837627--7837838 Score: 286
Period size: 77 Copynumber: 2.9 Consensus size: 74
7837617 GTGATCTGAA
7837627 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--
*
7837692 ATGTGAACCGAG
63 ACGTGAACCGAG
* *
7837704 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACCGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
* *
7837769 TG-TCTTGAG
66 TGAAC-CGAG
** * *
7837778 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAA
7837839 GAGTTGAATT
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
72 28 0.23
73 1 0.01
74 34 0.28
76 20 0.16
77 40 0.33
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
TGAACCGAG
Found at i:7837852 original size:38 final size:38
Alignment explanation
Indices: 7837801--7837875 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
7837791 CTCGCAATAT
7837801 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
7837876 GCGTGTCTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (38 bp):
GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
Found at i:7837930 original size:110 final size:108
Alignment explanation
Indices: 7837737--7837945 Score: 364
Period size: 110 Copynumber: 1.9 Consensus size: 108
7837727 AAGTTGATTT
*
7837737 TTTTGAAAACCGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
7837802 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA
66 AGTTGAATTTTAAAAACAG--ATTGAAATTACCTCAAGAGTTGAA
* *
7837847 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
7837912 AGTTGAATTTTAAAAACAGATTGAAATTACCTCA
66 AGTTGAATTTTAAAAACAGATTGAAATTACCTCA
7837946 GCGTGTCCCG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 15 0.16
110 80 0.84
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (108 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGAATTTTAAAAACAGATTGAAATTACCTCAAGAGTTGAA
Found at i:7837977 original size:180 final size:185
Alignment explanation
Indices: 7837660--7838017 Score: 503
Period size: 180 Copynumber: 2.0 Consensus size: 185
7837650 GAGTTGATTT
7837660 TTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAAT
1 TTTTGAAAGACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAAT
* * ** **
7837725 ATAAGTTGATTTTTTTGAAAACCGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
65 ATAAGTTGA-TATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACC
7837790 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA
129 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA
* * * **
7837847 TTTTGAAA-ACAGAAATTGAAATTACCTCAGC-GTG-TCTTGAGGCTCAACTCATTTCTCGCAAT
1 TTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAAC-CGAGGCTCAACTCACCTCTCGCAAT
* * * *
7837909 ATGAGTTGA-ATTTT-AAAAAC-AGATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCT
65 ATAAGTTGATATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCT
*
7837971 CTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
130 CTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
7838018 GCGTGTCCCA
Statistics
Matches: 154, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
180 81 0.53
181 5 0.03
182 4 0.03
183 1 0.01
184 33 0.21
186 22 0.14
187 8 0.05
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (185 bp):
TTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATA
TAAGTTGATATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTC
TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA
Found at i:7838037 original size:72 final size:72
Alignment explanation
Indices: 7837839--7838616 Score: 559
Period size: 72 Copynumber: 10.2 Consensus size: 72
7837829 ATTACCTCAA
* ** **
7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
7837904 GCAATAT
66 GCAATAT
* *
7837911 GAGTTGAATTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
7837974 GCAATAT
66 GCAATAT
*
7837981 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTC
1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
7838046 GCAATAT
66 GCAATAT
* * * * * *
7838053 GAGTTGA-TTTTGAAAA-ATATAATTGAAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAA
1 GAGTTGATTTTTGAAAACAGA-AATTG-------AAATTACCTCAGCGTGT--CCCGAGGCTCAA
7838116 CTCACCTCTCGCAATAT
56 CTCACCTCTCGCAATAT
* * ** * *
7838133 GAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTA
1 GAGTTGA---TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCA
7838198 CCTCTCGCAATAT
60 CCTCTCGCAATAT
* * * * * **
7838211 AAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTC
1 -GAGTT-G-----ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
**
7838276 ATTTCTCGCAATAT
59 ACCTCTCGCAATAT
7838290 GAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCAT-
1 GAGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACC-TC
7838354 TCGCAATAT
64 TCGCAATAT
* ** ** *
7838363 GAGCTGATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGC--GTCTTGAGGT
1 GAGTTGA--TTTTTGAAA-ACAGAAATT---G--------AAATTACCTCAGCGTGTCCCGAGGC
*
7838426 TCAACTCATCTCTCGCAATA-
52 TCAACTCACCTCTCGCAATAT
* * * * * **
7838446 GAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCAACATGTCTTTGAGGCTCAACTCACC
1 GAGTTGA--TTTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTC-CCGAGGCTCAACTCACC
* * *
7838511 GCTTGCAATAC
62 TCTCGCAATAT
* * *
7838522 GA-TTGATTTTTTTTTTTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCAAC
1 GAGTTGA--------TTTTTGAAAACAGAAATTGAAATT-ACCTCAGCGTGTCCCGAGGCTCAAC
*
7838586 TCACCTCTC-AAATAT
57 TCACCTCTCGCAATAT
*
7838601 GAGTTGAATTTTGAAA
1 GAGTTGATTTTTGAAA
7838617 TAAAACATCA
Statistics
Matches: 580, Mismatches: 70, Indels: 112
0.76 0.09 0.15
Matches are distributed among these distances:
70 66 0.11
71 14 0.02
72 93 0.16
73 61 0.11
74 13 0.02
75 35 0.06
76 2 0.00
77 1 0.00
78 58 0.10
79 37 0.06
80 74 0.13
81 38 0.07
82 9 0.02
83 25 0.04
84 35 0.06
85 6 0.01
86 13 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
GCAATAT
Found at i:7838134 original size:152 final size:148
Alignment explanation
Indices: 7837839--7838374 Score: 502
Period size: 142 Copynumber: 3.6 Consensus size: 148
7837829 ATTACCTCAA
* ** **
7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
* * * * * *** *
7837904 GCAATATGAGTTGA-ATTT-T-A---AAAACAG-ATTGAAATTACCTCAGCGTGTCCCGAGGCTC
66 GCAATATGAGTTGATTTTTATAATTGAAAACAGAAAT-AAAATACATCAACGTGTATTGAAGCTC
7837962 AACTCACCTCTCGCAATAT
130 AACTCACCTCTCGCAATAT
*
7837981 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTC
1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
* **
7838046 GCAATATGAGTTGATTTTGAAAAATATAATTG-AAA-A-AAA-AAAATACCTCAGTGTGTGATCT
66 GCAATATGAGTTGATTTT------TATAATTGAAAACAGAAATAAAATACATCAACGTGT-AT-T
7838107 GAAGCTCAACTCACCTCTCGCAATAT
123 GAAGCTCAACTCACCTCTCGCAATAT
* * ** * *
7838133 GAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTA
1 GAGTTGA---TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCA
* * * ** *
7838198 CCTCTCGCAATATAAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCT
60 CCTCTCGCAATAT-GAGTTGATTTTTATAATTGAAAACAGAAA-T-AAAATACATCAACGTGTAT
* **
7838263 TGAGGCTCAACTCATTTCTCGCAATAT
122 TGAAGCTCAACTCACCTCTCGCAATAT
7838290 GAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCAT-
1 GAGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACC-TC
*
7838354 TCGCAATATGAGCTGATTTTT
64 TCGCAATATGAGTTGATTTTT
7838375 TTGAAACACA
Statistics
Matches: 322, Mismatches: 42, Indels: 51
0.78 0.10 0.12
Matches are distributed among these distances:
142 73 0.23
143 2 0.01
149 1 0.00
150 16 0.05
151 10 0.03
152 61 0.19
153 9 0.03
154 24 0.07
155 19 0.06
156 24 0.07
157 30 0.09
158 30 0.09
159 23 0.07
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (148 bp):
GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTATAATTGAAAACAGAAATAAAATACATCAACGTGTATTGAAGCTCA
ACTCACCTCTCGCAATAT
Found at i:7838296 original size:157 final size:154
Alignment explanation
Indices: 7837847--7838612 Score: 491
Period size: 157 Copynumber: 5.0 Consensus size: 154
7837837 AAGAGTTGAA
* * **
7837847 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTG-TCTTGAGGCTCAACTCATTTCTCGCAAT
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAAC-TGAGGCTCAACTCACCTCTCGCAAT
** * * * * **
7837909 ATGAGTT-G-----AATTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
65 ATGAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACT
7837966 CACCTCTCGCAATATGAGTTGA--T
130 CACCTCTCGCAATATGAGTTGATTT
* ** **
7837989 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCCAAGGCTCAACTCACCTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATA
* * ** * ** * *
7838052 TGAGTTGATTTTGAAAAATATAATTG-AAA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAG
66 TGAGTTGGTTTT------TTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGT-CT-TGAGG
7838111 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
123 CTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* *
7838144 TTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTACCTCTCGCAAT
1 TTTTGAAA-ACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAAT
*
7838209 ATAAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAAC
65 AT-GAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAAC
** *
7838274 TCATTTCTCGCAATATGAGTTGA-AT
129 TCACCTCTCGCAATATGAGTTGATTT
* ** *
7838299 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCAT-TCGCAAT
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACC-TCTCGCAAT
* * * * * * *
7838361 ATGAGCT-G---ATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGCGTCTTG
65 ATGAGTTGGTTTTTTTTTTTGAAA-ACAGAAATT---G---AAAATACATCA--AC-GTGTCTTG
* * *
7838422 AGGTTCAACTCATCTCTCGCAATA-GAGCTGATTT
120 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *** * *
7838456 TTTTGAAAAACAGAAATTGAAAATAACTCAACATGT-CTTTGAGGCTCAACTCACCGCTTGCAAT
1 TTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAAT
* * * * * * * *
7838520 ACGA-TTGATTTTTTTTTTTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCA
65 ATGAGTTG--GTTTTTTTTTTTGAAAACAGAAATTGAAAAT-ACATCAACGTGTCTTGAGGCTCA
* *
7838584 ACTCACCTCTC-AAATATGAGTTGAATT
127 ACTCACCTCTCGCAATATGAGTTGATTT
7838611 TT
1 TT
7838613 GAAATAAAAC
Statistics
Matches: 490, Mismatches: 80, Indels: 95
0.74 0.12 0.14
Matches are distributed among these distances:
142 62 0.13
143 1 0.00
147 11 0.02
148 9 0.02
150 16 0.03
151 4 0.01
152 60 0.12
153 10 0.02
154 39 0.08
155 52 0.11
156 32 0.07
157 69 0.14
158 56 0.11
159 47 0.10
160 3 0.01
163 9 0.02
164 10 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (154 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTT
Found at i:7838327 original size:310 final size:306
Alignment explanation
Indices: 7837919--7838616 Score: 853
Period size: 310 Copynumber: 2.3 Consensus size: 306
7837909 ATGAGTTGAA
* *
7837919 TTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7837982 AGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACC-TCT
66 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCAT-T
* * * *
7838045 CGCAATATGAGTTGA-TTTTGAAA-A-ATATAATT-GAA-AAAAAAAAATACCTCAGTGTGTGAT
130 CGCAATATGAGCTGATTTTTGAAACACAGA-AATTAGAACAAAAAAAAACACCTCA--GCGT-AT
* * * *
7838105 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATAC
191 -TGAAGCTCAACTCACCTCTCGCAATA-GAGCTGA-TTTTTTTGAAAAACAGAAATTGAAAATAA
* * *
7838170 CTCAGCATGTGAACTGAGGCTCAACTTACCTCTCGCAATATAAAGTTG-GTTTTTTT
253 CTCAACATGT-AACTGAGGCTCAACTCACCGCTCGCAATA-AAA-TTGAGTTTTTTT
* * * * **
7838226 TTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
7838291 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCATTC
66 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCATTC
*
7838356 GCAATATGAGCTGATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGCGTCTT
131 GCAATATGAGCTGA--TTTTTGAAACACAGAAATT--AGAACAAAAAAAAACACCTCAGCGTATT
* * *
7838421 GAGGTTCAACTCATCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCA
192 GAAGCTCAACTCACCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCA
*** * ** *
7838486 ACATGTCTTTGAGGCTCAACTCACCGCTTGCAATACGATTGATTTTTTTTT
257 ACATGTAACTGAGGCTCAACTCACCGCTCGCAATAAAATTGA-GTTTTTTT
* * *
7838537 TTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTC-AAATAT
1 TTTTGAAAACAGAAATTGAAATT-ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
7838601 GAGTTGAA-TTTTGAAA
65 GAGTTGAATTTTTGAAA
7838617 TAAAACATCA
Statistics
Matches: 335, Mismatches: 40, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
307 11 0.03
309 52 0.16
310 78 0.23
311 65 0.19
312 63 0.19
313 14 0.04
314 28 0.08
315 3 0.01
316 3 0.01
317 3 0.01
318 15 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (306 bp):
TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCATTC
GCAATATGAGCTGATTTTTGAAACACAGAAATTAGAACAAAAAAAAACACCTCAGCGTATTGAAG
CTCAACTCACCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCAACAT
GTAACTGAGGCTCAACTCACCGCTCGCAATAAAATTGAGTTTTTTT
Found at i:7850133 original size:13 final size:14
Alignment explanation
Indices: 7850115--7850145 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7850105 ATGTACGAAT
7850115 ATATACATATA-TA
1 ATATACATATATTA
7850128 ATATACATATATTA
1 ATATACATATATTA
7850142 ATAT
1 ATAT
7850146 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:7852310 original size:67 final size:68
Alignment explanation
Indices: 7851990--7852298 Score: 530
Period size: 68 Copynumber: 4.5 Consensus size: 68
7851980 TTAAAAACAG
7851990 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA
*
7852055 ATGA
65 ACGA
*
7852059 AAGTTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
7852124 CGA
66 CGA
7852127 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
7852192 CGA
66 CGA
* * * *
7852195 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAAGTAGATTTTGAAAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
7852259 CGA
66 CGA
* *
7852262 AAATTAAAGGCTCAACTCAACTCTCGCAATATGAGTT
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTT
7852299 GATCTTTGAA
Statistics
Matches: 232, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
67 61 0.26
68 167 0.72
69 4 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (68 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
CGA
Found at i:7852499 original size:74 final size:71
Alignment explanation
Indices: 7852348--7852597 Score: 270
Period size: 71 Copynumber: 3.5 Consensus size: 71
7852338 ATTAAAAAGA
* * * * *
7852348 CTCAACTCACCTT-TCGCAATATGAATTAACTTTT-GAAAATATAATTTGAAAATACCTTAGCGT
1 CTCAACTCA-CTTCTCGCAATATGAGTTGA-TTTTAGAAAA-ATAAATTGAAATTACCTCAGCGT
* *
7852411 GCCGCAAGG
63 GCCCCGAGG
**
7852420 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGA-AAAATA--AATTGAAATTACCTCAGCGT
7852485 GCCCCGAGG
63 GCCCCGAGG
* * * * *
7852494 TTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTGCC
**
7852559 TTGAGG
66 CCGAGG
* *
7852565 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTT
7852598 CTTGAAAACA
Statistics
Matches: 151, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
71 61 0.40
72 28 0.19
73 5 0.03
74 57 0.38
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (71 bp):
CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTGCC
CCGAGG
Done.