Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr10 129486693 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 129486693 ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32 Warning! 305 characters in sequence are not A, C, G, or T File 31 of 444 Found at i:7674050 original size:12 final size:14 Alignment explanation
Indices: 7674022--7674053 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 7674012 AATAAAAATG 7674022 TAAAAAAATATATA 1 TAAAAAAATATATA 7674036 TAAAAAAAT-TA-A 1 TAAAAAAATATATA 7674048 TAAAAA 1 TAAAAA 7674054 GTAAGTAAAA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 12 7 0.39 13 2 0.11 14 9 0.50 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (14 bp): TAAAAAAATATATA Found at i:7674842 original size:2 final size:2 Alignment explanation
Indices: 7674835--7674869 Score: 70 Period size: 2 Copynumber: 17.5 Consensus size: 2 7674825 TGTTAAAAAG 7674835 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 7674870 TAAACTACAA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:7676658 original size:23 final size:23 Alignment explanation
Indices: 7676609--7676681 Score: 62 Period size: 21 Copynumber: 3.3 Consensus size: 23 7676599 ATTTAATTGT * * * 7676609 AATTTTTAATAATTTAATTCTAT 1 AATTTTTAAAAATTTAAATCTAA 7676632 AATTTTTAAAAAATTTAAATC-AA 1 AATTTTT-AAAAATTTAAATCTAA ** * 7676655 AA-TTTTATCATTTTAAAT-TAA 1 AATTTTTAAAAATTTAAATCTAA 7676676 AATTTT 1 AATTTT 7676682 ATCATTTTTA Statistics Matches: 41, Mismatches: 6, Indels: 7 0.76 0.11 0.13 Matches are distributed among these distances: 21 13 0.32 22 7 0.17 23 10 0.24 24 11 0.27 ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51 Consensus pattern (23 bp): AATTTTTAAAAATTTAAATCTAA Found at i:7676671 original size:21 final size:21 Alignment explanation
Indices: 7676645--7676689 Score: 81 Period size: 21 Copynumber: 2.1 Consensus size: 21 7676635 TTTTAAAAAA 7676645 TTTAAATCAAAATTTTATCAT 1 TTTAAATCAAAATTTTATCAT * 7676666 TTTAAATTAAAATTTTATCAT 1 TTTAAATCAAAATTTTATCAT 7676687 TTT 1 TTT 7676690 TAGAGGAATA Statistics Matches: 23, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 21 23 1.00 ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53 Consensus pattern (21 bp): TTTAAATCAAAATTTTATCAT Found at i:7677141 original size:132 final size:131 Alignment explanation
Indices: 7676984--7677369 Score: 400 Period size: 132 Copynumber: 2.9 Consensus size: 131 7676974 TCTTGTGCGG * * * * * 7676984 CTCAAAAAAATATAAACAAATTTTTATAATAATATATATTTTACTTCTCATCGGAGTGTGCCTAA 1 CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA * * * * * * 7677049 AAAGGATAGAATGTACTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGGAT 66 AAA-GTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGCAC 7677114 GA 130 GA * * * 7677116 CTCAAAAAAATATTAGTAATTTTTTATAATAATATATATTTTACCTCTCATCGAAGTGTGACTGA 1 CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA * * ** ** 7677181 AAATGTTAAAATTTGCTCACTCATTTATCGGTGAA-GTATACATGGTATGACATTTATCCTTGCA 66 AAA-GTTAAAATATGCTCACTCATTTA-CCGACAAGGTATACATGACATGACATTTATCCTTGCA 7677245 CGA 129 CGA * * * * * ** * 7677248 ATTAAAAACATATCAATAAATTTTTT-TAATAATAGATATTTTACCTCTCGGCGGAATGT-ATCT 1 CTCAAAAAAATATAAAT-AATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGA-CT * * ** * * 7677311 GAAAAGTTATAATATGCTTACTCATTTATTGATAAGGTATACATGACATGGCATTTATC 64 GAAAAGTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATC 7677370 TCTGGGTTGT Statistics Matches: 210, Mismatches: 40, Indels: 9 0.81 0.15 0.03 Matches are distributed among these distances: 130 3 0.01 131 41 0.20 132 154 0.73 133 12 0.06 ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36 Consensus pattern (131 bp): CTCAAAAAAATATAAATAATTTTTTATAATAATATATATTTTACCTCTCATCGGAGTGTGACTGA AAAGTTAAAATATGCTCACTCATTTACCGACAAGGTATACATGACATGACATTTATCCTTGCACG A Found at i:7677747 original size:26 final size:26 Alignment explanation
Indices: 7677710--7677767 Score: 89 Period size: 26 Copynumber: 2.2 Consensus size: 26 7677700 TGATACAAAT * 7677710 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATAGGTTAGATAAATGTTCCA * * 7677736 TGATAATGGGTTAGATAAATGTTTCA 1 TGATAATAGGTTAGATAAATGTTCCA 7677762 TGATAA 1 TGATAA 7677768 GAATTTCATG Statistics Matches: 29, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 26 29 1.00 ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36 Consensus pattern (26 bp): TGATAATAGGTTAGATAAATGTTCCA Found at i:7679158 original size:19 final size:19 Alignment explanation
Indices: 7679096--7679163 Score: 109 Period size: 20 Copynumber: 3.5 Consensus size: 19 7679086 TTTGGGCTTA * 7679096 ATGGGCCAAAGATCGAGTTC 1 ATGGGCCAAAGATCG-GGTC 7679116 ATGGGCCAAAGATCGGGTTC 1 ATGGGCCAAAGATCGGG-TC 7679136 ATGGGCCAAAGATCGGGTC 1 ATGGGCCAAAGATCGGGTC 7679155 ATGGGCCAA 1 ATGGGCCAA 7679164 CGGGCCCAAT Statistics Matches: 46, Mismatches: 1, Indels: 3 0.92 0.02 0.06 Matches are distributed among these distances: 19 12 0.26 20 34 0.74 ACGTcount: A:0.28, C:0.21, G:0.34, T:0.18 Consensus pattern (19 bp): ATGGGCCAAAGATCGGGTC Found at i:7679468 original size:27 final size:27 Alignment explanation
Indices: 7679427--7679548 Score: 163 Period size: 27 Copynumber: 4.5 Consensus size: 27 7679417 GAGGAAGCGT * * 7679427 TCTGGTGGCTATGCCATAAATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA 7679454 TCTGGTGGCTCTGCCACAAATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA * * * 7679481 TTTGGTGGCTCTGCCACATATATCTGT 1 TCTGGTGGCTCTGCCACAAATATCTGA * * 7679508 TCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACAAATATCTG-A * 7679536 TCTGGTGACTCTG 1 TCTGGTGGCTCTG 7679549 TCATATTATC Statistics Matches: 83, Mismatches: 11, Indels: 1 0.87 0.12 0.01 Matches are distributed among these distances: 27 71 0.86 28 12 0.14 ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35 Consensus pattern (27 bp): TCTGGTGGCTCTGCCACAAATATCTGA Found at i:7679512 original size:54 final size:55 Alignment explanation
Indices: 7679427--7679566 Score: 185 Period size: 54 Copynumber: 2.6 Consensus size: 55 7679417 GAGGAAGCGT * * * 7679427 TCTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * * * * 7679481 TTTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA * * 7679536 TCTGGTGACTCTGTCATAT-TATCTGTTCTGG 1 TCTGGTGGCTCTGCCATATATATCTGTTCTGG 7679567 CAGCCATGCT Statistics Matches: 74, Mismatches: 11, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 54 58 0.78 55 16 0.22 ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37 Consensus pattern (55 bp): TCTGGTGGCTCTGCCATATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA Found at i:7679556 original size:27 final size:28 Alignment explanation
Indices: 7679427--7679566 Score: 148 Period size: 27 Copynumber: 5.2 Consensus size: 28 7679417 GAGGAAGCGT * * * 7679427 TCTGGTGGCTATGCCATAAATATCTG-A 1 TCTGGTGGCTCTGCCACAATTATCTGTA * 7679454 TCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCACAATTATCTGTA * 7679481 TTTGGTGGCTCTGCCAC-ATATATCTGT- 1 TCTGGTGGCTCTGCCACAAT-TATCTGTA * 7679508 TCTGGTGGCTCTGCCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACAATTATCTGTA * * * 7679536 TCTGGTGACTCTGTCA-TATTATCTGT- 1 TCTGGTGGCTCTGCCACAATTATCTGTA 7679562 TCTGG 1 TCTGG 7679567 CAGCCATGCT Statistics Matches: 101, Mismatches: 8, Indels: 9 0.86 0.07 0.08 Matches are distributed among these distances: 26 6 0.06 27 79 0.78 28 16 0.16 ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37 Consensus pattern (28 bp): TCTGGTGGCTCTGCCACAATTATCTGTA Found at i:7679652 original size:19 final size:22 Alignment explanation
Indices: 7679628--7679667 Score: 59 Period size: 19 Copynumber: 2.0 Consensus size: 22 7679618 CTCCCCACAC 7679628 GGTGTA-A-GGTTGG-TATGGG 1 GGTGTATACGGTTGGATATGGG 7679647 GGTGTATACGGTTGGATATGG 1 GGTGTATACGGTTGGATATGG 7679668 TTGGGTTTCT Statistics Matches: 18, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 19 6 0.33 20 1 0.06 21 6 0.33 22 5 0.28 ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33 Consensus pattern (22 bp): GGTGTATACGGTTGGATATGGG Found at i:7682417 original size:32 final size:32 Alignment explanation
Indices: 7682376--7682472 Score: 160 Period size: 32 Copynumber: 3.0 Consensus size: 32 7682366 AATGCTTATC * 7682376 ATGCCCATCATCTATTAACTATTAAAATGTTA 1 ATGCCCATCATCTATTAACTATTAAAATGCTA 7682408 ATGCCCATCAT-TCATTAACTATTAAAATGCTA 1 ATGCCCATCATCT-ATTAACTATTAAAATGCTA * 7682440 ATGCCCATCATCCATTAACTATTAAAATGCTA 1 ATGCCCATCATCTATTAACTATTAAAATGCTA 7682472 A 1 A 7682473 AATGCATACA Statistics Matches: 61, Mismatches: 2, Indels: 4 0.91 0.03 0.06 Matches are distributed among these distances: 31 1 0.02 32 60 0.98 ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34 Consensus pattern (32 bp): ATGCCCATCATCTATTAACTATTAAAATGCTA Found at i:7683367 original size:44 final size:44 Alignment explanation
Indices: 7683304--7683474 Score: 324 Period size: 44 Copynumber: 3.9 Consensus size: 44 7683294 AGTCCGATGA 7683304 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG 1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG 7683348 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG 1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG * 7683392 ACTTGTAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG 1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG * 7683436 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAAGGAG 1 ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAG 7683475 GCCAAATCTG Statistics Matches: 124, Mismatches: 3, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 44 124 1.00 ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24 Consensus pattern (44 bp): ACTTGCAACTTTGACCTACTCCACTGCAACTTCAGGGAGACAAG Found at i:7683762 original size:76 final size:73 Alignment explanation
Indices: 7683646--7683877 Score: 261 Period size: 73 Copynumber: 3.1 Consensus size: 73 7683636 AAAAAAAAAG * * * 7683646 AAATTGAAAATATCTCAG-TGTGTCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTT 1 AAATTGAAAATACCTCAGCTGTG-CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTT 7683710 TTTGAAACAT 64 TTTGAAACAT * * * * 7683720 AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAGTCGATTTT 1 AAATTGAAAATACCTCAGC-TGTG-CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT *** * 7683785 TGAAAAACAA 64 TTTGAAACAT * * * * 7683795 AAACTGAAAATACCTCAGCGTGTG-CTGAGGCTCAACTCATCTCTTGCAATATGAGCTGATTTTT 1 AAATTGAAAATACCTCAGC-TGTGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTT 7683859 TTGAAACAT 65 TTGAAACAT * 7683868 AAATTAAAAA 1 AAATTGAAAA 7683878 ACACAAACTA Statistics Matches: 129, Mismatches: 27, Indels: 5 0.80 0.17 0.03 Matches are distributed among these distances: 73 47 0.36 74 16 0.12 75 31 0.24 76 35 0.27 ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30 Consensus pattern (73 bp): AAATTGAAAATACCTCAGCTGTGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT TGAAACAT Found at i:7683938 original size:160 final size:160 Alignment explanation
Indices: 7683770--7684269 Score: 883 Period size: 160 Copynumber: 3.1 Consensus size: 160 7683760 ACCTCTAGCA * * * 7683770 ATATGAGTCGATTTTTGAAAAACAAAAACTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAT 1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC * 7683835 CTCTTGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG 66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG 7683900 CGTGCCCTGAGGCTCAACTCATTTCTCGCT 131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT * 7683930 ATATGAGTCGATTCTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC 1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC 7683995 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG 66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG * 7684060 CGTGCCTTGAGGCTCAACTCATTTCTCGCT 131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT * 7684090 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC 1 ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC * * *** * 7684155 CTCTCGTAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAAACACAAACTAAGCATACCTCAG 66 CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG 7684220 CGTGCCCTGAGGCTCAACTCATTTCTCGCT 131 CGTGCCCTGAGGCTCAACTCATTTCTCGCT 7684250 ATATGAGTCGATTTTTGAAA 1 ATATGAGTCGATTTTTGAAA 7684270 TAGAAATAAA Statistics Matches: 325, Mismatches: 15, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 160 325 1.00 ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28 Consensus pattern (160 bp): ATATGAGTCGATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTGCTGAGGCTCAACTCAC CTCTCGCAATATGAGCTGATTTTTTTGAAACATAAATTAAAAAACACAAACTAAGCATACCTCAG CGTGCCCTGAGGCTCAACTCATTTCTCGCT Found at i:7683953 original size:87 final size:87 Alignment explanation
Indices: 7683787--7683964 Score: 216 Period size: 87 Copynumber: 2.0 Consensus size: 87 7683777 TCGATTTTTG ** * 7683787 AAAAACAAAAACTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCATCTCTTGCAATATGAGCT 1 AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGCT * *** * 7683852 GATTTTTTTGAAACATAAATTA 66 GATTCTTGAAAAACAAAAATTA * * * * 7683874 AAAAACACAAACT-AAGCATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAG- 1 AAAAACAAAAACTGAA-AATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGC 7683937 TCGATTCTTGAAAAACAAAAATTA 65 T-GATTCTTGAAAAACAAAAATTA 7683961 AAAA 1 AAAA 7683965 TACCTCAGCG Statistics Matches: 77, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 86 3 0.04 87 74 0.96 ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26 Consensus pattern (87 bp): AAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGCT GATTCTTGAAAAACAAAAATTA Found at i:7684026 original size:73 final size:73 Alignment explanation
Indices: 7683891--7684197 Score: 256 Period size: 73 Copynumber: 4.0 Consensus size: 73 7683881 CAAACTAAGC ** * 7683891 ATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAGTCGATTCTTGAAAAACAAA 1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA 7683956 AATTAAAA 66 AATTAAAA ** * *** * 7683964 ATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAG-CTGATTTTTTTGAAACAT 1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC-GATTCTTGAAAAACAA 7684028 AAATTAAAAA 65 AAATT-AAAA * * * * * * * * * 7684038 ACACAAACTAAGCATACCTCAGCGTGCCTTGAGGCTCAACTCATTTCTCGCTATATGAGTCGATT 1 ATAC---CTCAGCGTGCC-CTGAG-G-C-TCA-ACTC-AC-C---TCTCGCAATATGAGTCGATT * 7684103 TTTGAAAAACAAAAATTAAAA 53 CTTGAAAAACAAAAATTAAAA * * * * 7684124 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAAA 1 ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA 7684189 AATTAAAA 66 AATTAAAA 7684197 A 1 A 7684198 ACACAAACTA Statistics Matches: 181, Mismatches: 37, Indels: 32 0.72 0.15 0.13 Matches are distributed among these distances: 72 1 0.01 73 96 0.53 74 7 0.04 76 1 0.01 77 8 0.04 78 6 0.03 79 3 0.02 80 2 0.01 81 3 0.02 82 6 0.03 83 9 0.05 84 1 0.01 86 7 0.04 87 30 0.17 88 1 0.01 ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28 Consensus pattern (73 bp): ATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTCTTGAAAAACAAA AATTAAAA Found at i:7684038 original size:87 final size:87 Alignment explanation
Indices: 7683947--7684124 Score: 216 Period size: 87 Copynumber: 2.0 Consensus size: 87 7683937 TCGATTCTTG * * 7683947 AAAAACAAAAATTAAAAATACCTCAGCGTGTGC-TGAGGCTCAACTCACCTCTCGCAATATGAG- 1 AAAAACAAAAACTAAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT *** * 7684010 CTGATTTTTTTGAAACATAAATTA 65 C-GATTTTTGAAAAACAAAAATTA * ** ** * 7684034 AAAAACACAAACTAAGCATACCTCAGCGTGCCTTGAGGCTCAACTCATTTCTCGCTATATGAGTC 1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTC 7684099 GATTTTTGAAAAACAAAAATTA 66 GATTTTTGAAAAACAAAAATTA 7684121 AAAA 1 AAAA 7684125 TACCTCAGCG Statistics Matches: 77, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 86 1 0.01 87 75 0.97 88 1 0.01 ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26 Consensus pattern (87 bp): AAAAACAAAAACTAAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTC GATTTTTGAAAAACAAAAATTA Found at i:7684198 original size:87 final size:87 Alignment explanation
Indices: 7684107--7684269 Score: 238 Period size: 87 Copynumber: 1.9 Consensus size: 87 7684097 TCGATTTTTG * * 7684107 AAAAACAAAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG-TAATATGAGT 1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCT-ATATGAGT * 7684171 TGATTTTTGAAAAACAAAAATTA 65 CGATTTTTGAAAAACAAAAATTA * ** ** 7684194 AAAAACACAAACTAAGCATACCTCAGCGTGCCCTGAGGCTCAACTCATTTCTCGCTATATGAGTC 1 AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCTATATGAGTC 7684259 GATTTTTGAAA 66 GATTTTTGAAA 7684270 TAGAAATAAA Statistics Matches: 67, Mismatches: 8, Indels: 2 0.87 0.10 0.03 Matches are distributed among these distances: 87 66 0.99 88 1 0.01 ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26 Consensus pattern (87 bp): AAAAACAAAAACTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCTATATGAGTC GATTTTTGAAAAACAAAAATTA Found at i:7685079 original size:43 final size:41 Alignment explanation
Indices: 7685030--7685145 Score: 137 Period size: 42 Copynumber: 2.8 Consensus size: 41 7685020 CTTCATTAGA * * * * 7685030 ACGCCCTTTCGGGTTTTTATCCTAT-TTTTTTGTGTTAATCAAG 1 ACGCCCTTTCGGGTTTTCA-CCT-TGATCTTT-TGCTAATCAAG 7685073 ACGCCCTTTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG 1 ACGCCC-TTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG 7685115 ACGCCCTTCTCGGGTTTTCACC-TGATCTTTT 1 ACGCCCTT-TCGGGTTTTCACCTTGATCTTTT 7685146 TTTCGAGTTT Statistics Matches: 66, Mismatches: 4, Indels: 8 0.85 0.05 0.10 Matches are distributed among these distances: 41 11 0.17 42 30 0.45 43 13 0.20 44 12 0.18 ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44 Consensus pattern (41 bp): ACGCCCTTTCGGGTTTTCACCTTGATCTTTTGCTAATCAAG Found at i:7685122 original size:42 final size:41 Alignment explanation
Indices: 7685065--7685145 Score: 144 Period size: 42 Copynumber: 2.0 Consensus size: 41 7685055 TTTTTTGTGT * 7685065 TAATCAAGACGCCCTTTTCGGGTTTTCACCTTGATCTTTTGC 1 TAATCAAGACGCCCTTCTCGGGTTTTCACC-TGATCTTTTGC 7685107 TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTT 1 TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTT 7685146 TTTCGAGTTT Statistics Matches: 38, Mismatches: 1, Indels: 1 0.95 0.03 0.03 Matches are distributed among these distances: 41 9 0.24 42 29 0.76 ACGTcount: A:0.17, C:0.27, G:0.16, T:0.40 Consensus pattern (41 bp): TAATCAAGACGCCCTTCTCGGGTTTTCACCTGATCTTTTGC Found at i:7696314 original size:23 final size:25 Alignment explanation
Indices: 7696287--7696332 Score: 69 Period size: 23 Copynumber: 1.9 Consensus size: 25 7696277 GAAAAATGTT 7696287 TACATAATA-ATAT-TAAATATAGG 1 TACATAATATATATATAAATATAGG * 7696310 TACATAATATATATATATATATA 1 TACATAATATATATATAAATATA 7696333 TTCATAACAT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 23 9 0.45 24 4 0.20 25 7 0.35 ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39 Consensus pattern (25 bp): TACATAATATATATATAAATATAGG Found at i:7696696 original size:24 final size:26 Alignment explanation
Indices: 7696659--7696710 Score: 63 Period size: 24 Copynumber: 2.1 Consensus size: 26 7696649 TATATATTCG * * 7696659 TAATATATACAAACGTATATATAATA 1 TAATATATACAAACATATACATAATA * 7696685 TAATAT-TA-AAACATTTACATAATA 1 TAATATATACAAACATATACATAATA 7696709 TA 1 TA 7696711 TATCCACCAC Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 24 15 0.65 25 2 0.09 26 6 0.26 ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37 Consensus pattern (26 bp): TAATATATACAAACATATACATAATA Found at i:7696842 original size:41 final size:40 Alignment explanation
Indices: 7696791--7696884 Score: 107 Period size: 42 Copynumber: 2.3 Consensus size: 40 7696781 GATTATGCAT * * 7696791 TAGCGGCGTTTGCACAAAAATGCCGCTAAAAAACTGAGTAA 1 TAGCGGCGTTTGCAC-AAAACGCCGCTAAAAAACTGAGAAA ** * * 7696832 TAGCGGCGTTTTTGGTCCAAACGCCGCTAAAAAACTTAGAAA 1 TAGCGGCG--TTTGCACAAAACGCCGCTAAAAAACTGAGAAA 7696874 TAGCGGCGTTT 1 TAGCGGCGTTT 7696885 TTAGTCCAAA Statistics Matches: 45, Mismatches: 6, Indels: 5 0.80 0.11 0.09 Matches are distributed among these distances: 40 3 0.07 41 8 0.18 42 29 0.64 43 5 0.11 ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23 Consensus pattern (40 bp): TAGCGGCGTTTGCACAAAACGCCGCTAAAAAACTGAGAAA Found at i:7696876 original size:42 final size:42 Alignment explanation
Indices: 7696812--7696926 Score: 171 Period size: 42 Copynumber: 2.8 Consensus size: 42 7696802 GCACAAAAAT * 7696812 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTGGTCCAAAC 1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC * * 7696854 GCCGCTAAAAAACTTAGAAATAGCGGCGTTTTTAGTCCAAAC 1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC * * 7696896 CCCGCT--AAAACTGAGTAATAGCAGCGTTTTT 1 GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTT 7696927 TAAGAAAATG Statistics Matches: 66, Mismatches: 7, Indels: 2 0.88 0.09 0.03 Matches are distributed among these distances: 40 22 0.33 42 44 0.67 ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25 Consensus pattern (42 bp): GCCGCTAAAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC Found at i:7697609 original size:21 final size:21 Alignment explanation
Indices: 7697575--7697614 Score: 53 Period size: 21 Copynumber: 1.9 Consensus size: 21 7697565 TTAAGTTTAT * * * 7697575 GGTTTGGTATTTTAGATTTGG 1 GGTTTAGTAATTTAAATTTGG 7697596 GGTTTAGTAATTTAAATTT 1 GGTTTAGTAATTTAAATTT 7697615 TGTTGTTTGT Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 21 16 1.00 ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53 Consensus pattern (21 bp): GGTTTAGTAATTTAAATTTGG Found at i:7697703 original size:20 final size:18 Alignment explanation
Indices: 7697659--7697697 Score: 69 Period size: 18 Copynumber: 2.2 Consensus size: 18 7697649 GTCTTAGTAC 7697659 ATGTTTAGAGTATTATAT 1 ATGTTTAGAGTATTATAT * 7697677 ATGTTTATAGTATTATAT 1 ATGTTTAGAGTATTATAT 7697695 ATG 1 ATG 7697698 GTTTTAGGGT Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 18 20 1.00 ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51 Consensus pattern (18 bp): ATGTTTAGAGTATTATAT Found at i:7697862 original size:36 final size:37 Alignment explanation
Indices: 7697773--7697862 Score: 94 Period size: 36 Copynumber: 2.4 Consensus size: 37 7697763 AGTAAAAATC * * 7697773 TTGACGTTTATGGTTTACGAATTTAGGGTATATGGAAT 1 TTGA-GTTTATGGTTTACAAATTTAGGGTATAGGGAAT * * * * 7697811 TAGGGTTTA-GAGTTTA-AAATTTAGGGTTTAGGGTAT 1 TTGAGTTTATG-GTTTACAAATTTAGGGTATAGGGAAT 7697847 TTGAGTTTATGGTTTA 1 TTGAGTTTATGGTTTA 7697863 GTTTATAAGG Statistics Matches: 42, Mismatches: 8, Indels: 6 0.75 0.14 0.11 Matches are distributed among these distances: 36 29 0.69 37 11 0.26 38 2 0.05 ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44 Consensus pattern (37 bp): TTGAGTTTATGGTTTACAAATTTAGGGTATAGGGAAT Found at i:7700897 original size:64 final size:64 Alignment explanation
Indices: 7700829--7700962 Score: 209 Period size: 64 Copynumber: 2.1 Consensus size: 64 7700819 TAATATTTCT * * 7700829 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGA-TATAATATGTCTCATCTAATATAA-A 1 ATATTTCTATCACAATTTTTAATAAATTTATTTATT-ATTATAATATGTCCCATCTAATA-AACA 7700892 A 64 A * 7700893 ATATTTCTATCACAATTTTTGATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA 1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA 7700957 ATATTT 1 ATATTT 7700963 AATAAAATAT Statistics Matches: 65, Mismatches: 3, Indels: 4 0.90 0.04 0.06 Matches are distributed among these distances: 63 3 0.05 64 62 0.95 ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47 Consensus pattern (64 bp): ATATTTCTATCACAATTTTTAATAAATTTATTTATTATTATAATATGTCCCATCTAATAAACAA Found at i:7701037 original size:24 final size:24 Alignment explanation
Indices: 7701010--7701080 Score: 97 Period size: 24 Copynumber: 3.0 Consensus size: 24 7701000 ATTATTATTG * * 7701010 AAATATTCTCTTCCATTTTATCAC 1 AAATATTATCTTCCGTTTTATCAC * * 7701034 AAATATTATTTTCCGTTTTACCAC 1 AAATATTATCTTCCGTTTTATCAC * 7701058 AAATATTATCGTCCGTTTTATCA 1 AAATATTATCTTCCGTTTTATCA 7701081 TTTAAGTTAA Statistics Matches: 40, Mismatches: 7, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 40 1.00 ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45 Consensus pattern (24 bp): AAATATTATCTTCCGTTTTATCAC Found at i:7701545 original size:240 final size:241 Alignment explanation
Indices: 7701122--7701783 Score: 1236 Period size: 240 Copynumber: 2.7 Consensus size: 241 7701112 ATACCTTTTT 7701122 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT 1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT * 7701187 TACAACAATAGTTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG 66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG * * 7701252 CTGGAAACATGACGGGTTGCTTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC 131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC 7701317 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAA 196 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA 7701362 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT 1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT * * 7701427 TACAACAATAGCTGACCTTCTCTCTAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATTTAGG 66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG 7701492 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC 131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC 7701557 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA 196 AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA * * 7701603 AAGGTTCTATCGAGCTCATTTACTATTGAATATTCATTACCATGTAGCTTGCTTGTCCATTAAAA 1 AA-GTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAA 7701668 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG 65 TTACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG * 7701733 GTTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATC 130 GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATC 7701784 AAATTTCATA Statistics Matches: 410, Mismatches: 10, Indels: 2 0.97 0.02 0.00 Matches are distributed among these distances: 240 232 0.57 241 5 0.01 242 173 0.42 ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34 Consensus pattern (241 bp): AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC AACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA Found at i:7707816 original size:43 final size:43 Alignment explanation
Indices: 7707769--7707858 Score: 110 Period size: 43 Copynumber: 2.1 Consensus size: 43 7707759 TCTGCCAAAA * * * 7707769 TTAGCGGCGTTTGT-AGAAAAAGCGCCGCTATAAGCCTTGACTT 1 TTAGCGGCGTTTGTCACAAAAA-CGCCGCTAAAAGCCGTGACTT * * * 7707812 TTAGCGGCGTTTTTCCCACAAACGCCGCTAAAAGCCGTGACTT 1 TTAGCGGCGTTTGTCACAAAAACGCCGCTAAAAGCCGTGACTT 7707855 TTAG 1 TTAG 7707859 TGGCATTTTT Statistics Matches: 40, Mismatches: 6, Indels: 2 0.83 0.12 0.04 Matches are distributed among these distances: 43 36 0.90 44 4 0.10 ACGTcount: A:0.24, C:0.24, G:0.23, T:0.28 Consensus pattern (43 bp): TTAGCGGCGTTTGTCACAAAAACGCCGCTAAAAGCCGTGACTT Found at i:7707878 original size:43 final size:43 Alignment explanation
Indices: 7707791--7707880 Score: 117 Period size: 43 Copynumber: 2.1 Consensus size: 43 7707781 GTAGAAAAAG * * * * 7707791 CGCCGCTATAAGCCTTGACTTTTAGCGGCGTTTTTCCCACAAA 1 CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA * * * 7707834 CGCCGCTAAAAGCCGTGACTTTTAGTGGCATTTTTTCAATAAA 1 CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA 7707877 CGCC 1 CGCC 7707881 ACAAATTTTT Statistics Matches: 40, Mismatches: 7, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 43 40 1.00 ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30 Consensus pattern (43 bp): CGCCGCTAAAAGCCGTGACTTTTAGCGGCATTTTTCCAACAAA Found at i:7708285 original size:22 final size:22 Alignment explanation
Indices: 7708236--7708288 Score: 63 Period size: 23 Copynumber: 2.4 Consensus size: 22 7708226 AGAAATGAGT * 7708236 AAAAATAATATACATAATAATA 1 AAAAATATTATACATAATAATA * 7708258 AGAAAATATTATA-ATAAATACTA 1 A-AAAATATTATACAT-AATAATA 7708281 AAAAATAT 1 AAAAATAT 7708289 CAATATATAT Statistics Matches: 27, Mismatches: 2, Indels: 4 0.82 0.06 0.12 Matches are distributed among these distances: 22 10 0.37 23 17 0.63 ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28 Consensus pattern (22 bp): AAAAATATTATACATAATAATA Found at i:7708763 original size:29 final size:30 Alignment explanation
Indices: 7708669--7708753 Score: 147 Period size: 30 Copynumber: 2.9 Consensus size: 30 7708659 TAAACCCCCC * 7708669 AAAA-AAAAACCTAA-CAAAAAAAAAAGAA 1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA 7708697 AAAAGAAAAACCTAACCCAAAAAAAAAGAA 1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA 7708727 AAAAGAAAAACCTAACCCAAAAAAAAA 1 AAAAGAAAAACCTAACCCAAAAAAAAA 7708754 AACCAAGAAA Statistics Matches: 54, Mismatches: 1, Indels: 2 0.95 0.02 0.04 Matches are distributed among these distances: 28 4 0.07 29 10 0.19 30 40 0.74 ACGTcount: A:0.76, C:0.15, G:0.05, T:0.04 Consensus pattern (30 bp): AAAAGAAAAACCTAACCCAAAAAAAAAGAA Found at i:7709953 original size:18 final size:18 Alignment explanation
Indices: 7709930--7710006 Score: 94 Period size: 18 Copynumber: 4.6 Consensus size: 18 7709920 TAAGCCCCCC 7709930 AAAAAAAAACCTAA-CCA 1 AAAAAAAAACCTAACCCA * 7709947 AAAAAAAAA--GAA---A 1 AAAAAAAAACCTAACCCA * 7709960 AAAGAAAAACCTAACCCA 1 AAAAAAAAACCTAACCCA 7709978 AAAAAAAAACCTAACCCA 1 AAAAAAAAACCTAACCCA 7709996 AAAAAAAAACC 1 AAAAAAAAACC 7710007 AAGAAACCCT Statistics Matches: 51, Mismatches: 4, Indels: 9 0.80 0.06 0.14 Matches are distributed among these distances: 13 9 0.18 15 4 0.08 17 9 0.18 18 29 0.57 ACGTcount: A:0.73, C:0.21, G:0.03, T:0.04 Consensus pattern (18 bp): AAAAAAAAACCTAACCCA Found at i:7709970 original size:30 final size:30 Alignment explanation
Indices: 7709930--7709986 Score: 98 Period size: 31 Copynumber: 1.9 Consensus size: 30 7709920 TAAGCCCCCC 7709930 AAAAAAAAACCTAA-CCAAAAAAAAAAGAA 1 AAAAAAAAACCTAACCCAAAAAAAAAAGAA 7709959 AAAAGAAAAACCTAACCCAAAAAAAAAA 1 AAAA-AAAAACCTAACCCAAAAAAAAAA 7709987 CCTAACCCAA Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 29 4 0.15 30 10 0.38 31 12 0.46 ACGTcount: A:0.77, C:0.16, G:0.04, T:0.04 Consensus pattern (30 bp): AAAAAAAAACCTAACCCAAAAAAAAAAGAA Found at i:7721241 original size:73 final size:71 Alignment explanation
Indices: 7721052--7721241 Score: 254 Period size: 72 Copynumber: 2.6 Consensus size: 71 7721042 AAGCCTTTTT * * * * 7721052 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT 1 ATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT * 7721117 ATTTTCA 65 AATTTCA * ** 7721124 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT 1 ATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT 7721189 AATTTCA 65 AATTTCA * * 7721196 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA 1 ATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA 7721242 ACCTTTTAAT Statistics Matches: 102, Mismatches: 13, Indels: 5 0.85 0.11 0.04 Matches are distributed among these distances: 71 3 0.03 72 72 0.71 73 27 0.26 ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36 Consensus pattern (71 bp): ATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTA ATTTCA Found at i:7721384 original size:72 final size:72 Alignment explanation
Indices: 7721259--7721692 Score: 532 Period size: 72 Copynumber: 6.0 Consensus size: 72 7721249 AATTTCTACT ** * 7721259 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCG 1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA 7721323 ATTTCTG 66 ATTTCTG * * * 7721330 TTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACATGCTGAGGTAATTTCA 1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA * 7721395 ATTTCTA 66 ATTTCTG * ** 7721402 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAATTTCA 1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA 7721467 ATTTCTG 66 ATTTCTG ** * * 7721474 TTTTCAAAATTCAACTCATATTGCGAGAAATGA-TTGAGCCTTGAGACACGTTGAGGTATTTTCA 1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA 7721538 ATTTCTG 66 ATTTCTG * * ** * * * 7721545 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT 1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT 7721609 TCAATTTCTG 63 TCAATTTCTG * ** * * * 7721619 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTAT 1 T-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGCTGAGGTAA 7721684 TTTCAATTT 61 TTTCAATTT 7721693 TCGTTTTTCA Statistics Matches: 320, Mismatches: 32, Indels: 16 0.87 0.09 0.04 Matches are distributed among these distances: 71 71 0.22 72 162 0.51 74 25 0.08 75 4 0.01 77 58 0.18 ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34 Consensus pattern (72 bp): TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA ATTTCTG Found at i:7721399 original size:199 final size:196 Alignment explanation
Indices: 7720883--7721659 Score: 763 Period size: 199 Copynumber: 3.9 Consensus size: 196 7720873 TCAAGGAAAC * * * 7720883 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGT-TGTT 1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT-TCTGTT * 7720947 TTCAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGT-A-TT---TT 65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATT * ** * * 7721006 T-AGTTTT--AAATTGACTCATATTGCGAGAAATGAGTT-AAGCCTTTTTATTT-TTGTTTTTCA 130 TCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAA-CCTTTTAATTTCTTCTTTTTCA 7721066 AAA 194 AAA * ** * * * * 7721069 TCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGT 1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGT-T * * * * 7721134 TT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAAT 65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAAT ** * * 7721198 TTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT 129 TTCTGTTT-TCAA-AATCAACTCATATTGCGAGAAATGAGTTGAACCTTTTAATTTCTTCTTTTT 7721263 CAAAA 192 CAAAA ** * * 7721268 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCGATTTCTGTTT 1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTT * * * * * 7721333 TTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACATGCTGAGGTAATTTCAATT 66 TCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATT * 7721398 TCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACATTGAGGTAAT 130 TCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAACCT---------TT----TAAT 7721463 TTCAATTTCTGTTTTCAAAA 181 TTC---TTCT-TTTTCAAAA ** * 7721483 TTCAACTCATATTGCGAGAAATGA-TTGAGCCTTGAGACACGTTGAGGTATTTTCAATTTCTGTT 1 -TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTT * * * * * 7721547 TTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCA 65 TTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG---ACACGCTGAGGTAATTTCA ** 7721612 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA 127 ATTTCTGT-TTTC---AAAATCAACTCATATTGCGAGAAATGAGTTGA 7721660 GCCTCAGATC Statistics Matches: 489, Mismatches: 59, Indels: 52 0.81 0.10 0.09 Matches are distributed among these distances: 185 1 0.00 186 56 0.11 187 35 0.07 188 12 0.02 189 1 0.00 190 2 0.00 193 3 0.01 194 4 0.01 195 1 0.00 197 3 0.01 198 69 0.14 199 128 0.26 207 2 0.00 211 7 0.01 214 4 0.01 215 79 0.16 216 23 0.05 217 25 0.05 218 4 0.01 220 26 0.05 221 4 0.01 ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35 Consensus pattern (196 bp): TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTT TCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTT CTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTTTTAATTTCTTCTTTTTCAAA A Found at i:7721778 original size:93 final size:91 Alignment explanation
Indices: 7721606--7721785 Score: 252 Period size: 93 Copynumber: 2.0 Consensus size: 91 7721596 TGCTGAGGTA * 7721606 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA 1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA * 7721671 CACGCCGAGGTATTTTCAATTTTCGT 66 CACGCCGAGCTATTTTCAATTTTCGT * * ** * 7721697 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCT 1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT ** * 7721762 CACGTGCTGAGCTATTTTCAATTT 64 CACACGCCGAGCTATTTTCAATTT 7721786 CTGTCTTTCA Statistics Matches: 77, Mismatches: 10, Indels: 2 0.87 0.11 0.02 Matches are distributed among these distances: 91 18 0.23 93 59 0.77 ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36 Consensus pattern (91 bp): TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA CACGCCGAGCTATTTTCAATTTTCGT Found at i:7721839 original size:170 final size:157 Alignment explanation
Indices: 7721260--7722304 Score: 723 Period size: 142 Copynumber: 6.9 Consensus size: 157 7721250 ATTTCTACTT ** ** * * 7721260 TTTC-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACAC-GCTGAGGTAATTTCG 1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA * * ** * * ** * 7721323 ATTTCTGT-TTT--TAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCA-A-GACATGCT 66 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC * * * 7721383 GAGGTA------ATTTCAATTTCTA-T 131 GAGGTATTTTTTTTTTCAATTTATACC * ** * * * * 7721403 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAG-ACACAT--TGAGGTAATTT 1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCAC-TGCTGAGGTATTTT * ** * * * 7721465 CAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGA-TTGAGCCT-TGA-GACACG 64 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACA ** * ** 7721524 TTGAGGTA------TTTTCAATTTCT-GT 129 CCGAGGTATTTTTTTTTTCAATTTATACC * * 7721546 TTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTC 1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTTTC * 7721611 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGC 65 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC * * 7721676 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCC 130 CGAGGTA---T---TTTT--TTTTTCAATTTATACC * * * * 7721712 TTTCAAAAAAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTAT 1 TTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTAT * 7721777 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC 61 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC * ** 7721842 ACACTGAGGTATTTTTTTTTTCAATTTATATT 126 ACACCGAGGTATTTTTTTTTTCAATTTATACC ** * 7721874 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC-GCTGAGGTAATTTCA 1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA * * * ** * * 7721938 ATTTTTGT-TTTC--AAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTC-G-GGACACGCT 66 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC * * * 7721998 GAGGTA------ATTTCAATCTGT--- 131 GAGGTATTTTTTTTTTCAATTTATACC * ** * * * 7722016 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC-GCTGAGGTAATTTC 1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACTGCTGAGGTATTTTC * ** * *** 7722079 AATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACATGT 65 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACAC * * * ** 7722139 TGAAGTA------TTTTCAATTTCT-GT 130 CGAGGTATTTTTTTTTTCAATTTATACC * * * 7722160 TTTCAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTT 1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTT * 7722225 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC 63 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC * * 7722290 ACTGTGGTATTTTTT 128 ACCGAGGTATTTTTT 7722305 CAATTTATAT Statistics Matches: 755, Mismatches: 91, Indels: 96 0.80 0.10 0.10 Matches are distributed among these distances: 142 123 0.16 143 79 0.10 144 94 0.12 145 31 0.04 146 40 0.05 148 47 0.06 149 12 0.02 150 2 0.00 151 58 0.08 152 2 0.00 153 43 0.06 155 4 0.01 156 20 0.03 158 40 0.05 162 16 0.02 164 4 0.01 165 12 0.02 166 4 0.01 167 1 0.00 170 123 0.16 ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34 Consensus pattern (157 bp): TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTTTCA ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC GAGGTATTTTTTTTTTCAATTTATACC Found at i:7721976 original size:72 final size:72 Alignment explanation
Indices: 7721720--7722277 Score: 598 Period size: 72 Copynumber: 7.5 Consensus size: 72 7721710 CCTTTCAAAA * * * ** * 7721720 AAAAATCGACTCGTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAATT 7721785 TCTGTCTTTC 64 TCTGT-TTTC * ** * 7721795 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTT 1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA------T * * 7721860 TTTCAATTTATATTTTTC 56 TTTCAATTTCT-GTTTTC * * 7721878 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTT 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC 7721943 TGTTTTC 66 TGTTTTC * * * 7721950 AAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGACACGCTGAGGTAATTTCAA--TC 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC 7722013 TGTTTTC 66 TGTTTTC * ** ** * 7722020 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC 7722085 TGTTTTC 66 TGTTTTC * ** ** * * * 7722092 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAAGTATTTTCAATTTC 1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC 7722157 TGTTTTC 66 TGTTTTC * * * * 7722164 AAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAA 1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAA 7722229 TTTCTGTCTTTC 62 TTTCTGT-TTTC 7722241 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC 1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC 7722278 TTCAGATCAC Statistics Matches: 422, Mismatches: 43, Indels: 32 0.85 0.09 0.06 Matches are distributed among these distances: 70 62 0.15 72 141 0.33 73 10 0.02 74 33 0.08 76 25 0.06 77 80 0.19 78 1 0.00 79 16 0.04 80 1 0.00 81 37 0.09 83 15 0.04 84 1 0.00 ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33 Consensus pattern (72 bp): AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC TGTTTTC Found at i:7722307 original size:214 final size:207 Alignment explanation
Indices: 7721872--7722293 Score: 484 Period size: 214 Copynumber: 2.0 Consensus size: 207 7721862 TCAATTTATA ** ** * 7721872 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC 1 TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTTC * * * 7721937 AATTTTTGTTTTCAAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTCGGGACACGCTGAGG 66 AATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGGCACACGCTGAGG * * * 7722002 TAATTTCAATCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC 131 TAATTTCAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC 7722067 TGAGGTAATTTCAATTTC 196 TGAGG----TT-AA-TTC * * * * 7722085 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAAGTATTTT 1 T-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTT * * * 7722150 CAATTTCTGTTTTCAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCACATGC 65 CAATTTCTGTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGG--CACACGC * ** * 7722215 TGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT 126 TGAGGTAATTTCAA--TCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT 7722280 CAGATCACACACTG 186 CA-A-CACACACTG 7722294 TGGTATTTTT Statistics Matches: 175, Mismatches: 22, Indels: 12 0.84 0.11 0.06 Matches are distributed among these distances: 213 1 0.01 214 67 0.38 216 37 0.21 218 18 0.10 220 5 0.03 221 4 0.02 223 35 0.20 224 1 0.01 225 7 0.04 ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32 Consensus pattern (207 bp): TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAAGTAATTTC AATTTCTGTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGGCACACGCTGAGG TAATTTCAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC TGAGGTTAATTC Found at i:7723183 original size:28 final size:28 Alignment explanation
Indices: 7723144--7723198 Score: 94 Period size: 29 Copynumber: 2.0 Consensus size: 28 7723134 TAAGCCCCCC 7723144 AAAAAAAAAACCTAA-CCAAAAAAAAAG 1 AAAAAAAAAACCTAACCCAAAAAAAAAG 7723171 AAAAAGAAAAACCTAACCCAAAAAAAAA 1 AAAAA-AAAAACCTAACCCAAAAAAAAA 7723199 AACCTAACCC Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 27 5 0.19 28 10 0.38 29 11 0.42 ACGTcount: A:0.76, C:0.16, G:0.04, T:0.04 Consensus pattern (28 bp): AAAAAAAAAACCTAACCCAAAAAAAAAG Found at i:7723199 original size:19 final size:19 Alignment explanation
Indices: 7723171--7723221 Score: 93 Period size: 19 Copynumber: 2.7 Consensus size: 19 7723161 AAAAAAAAAG * 7723171 AAAAAGAAAAACCTAACCC 1 AAAAAAAAAAACCTAACCC 7723190 AAAAAAAAAAACCTAACCC 1 AAAAAAAAAAACCTAACCC 7723209 AAAAAAAAAAACC 1 AAAAAAAAAAACC 7723222 AAGAAACCCT Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 19 31 1.00 ACGTcount: A:0.71, C:0.24, G:0.02, T:0.04 Consensus pattern (19 bp): AAAAAAAAAAACCTAACCC Found at i:7729052 original size:22 final size:20 Alignment explanation
Indices: 7729027--7729068 Score: 57 Period size: 20 Copynumber: 2.0 Consensus size: 20 7729017 ATTATTTTTC 7729027 TCATACAAAATGATTAAAAAAA 1 TCATA-AAAATGA-TAAAAAAA * 7729049 TCATAAAAATTATAAAAAAA 1 TCATAAAAATGATAAAAAAA 7729069 GAAAATATTA Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 20 8 0.42 21 6 0.32 22 5 0.26 ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24 Consensus pattern (20 bp): TCATAAAAATGATAAAAAAA Found at i:7729926 original size:30 final size:29 Alignment explanation
Indices: 7729883--7729943 Score: 70 Period size: 30 Copynumber: 2.1 Consensus size: 29 7729873 TTTTATGATT * 7729883 TTTTTATAACTTTT-TGTAATTTTATATAAA 1 TTTTAATAACTTTTATG-AATTTTATA-AAA * * 7729913 TTTTAATACCTTTTATGATTTTTATAAAA 1 TTTTAATAACTTTTATGAATTTTATAAAA 7729942 TT 1 TT 7729944 ATAAAATATT Statistics Matches: 27, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 29 5 0.19 30 20 0.74 31 2 0.07 ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59 Consensus pattern (29 bp): TTTTAATAACTTTTATGAATTTTATAAAA Found at i:7729955 original size:21 final size:23 Alignment explanation
Indices: 7729930--7729978 Score: 75 Period size: 22 Copynumber: 2.2 Consensus size: 23 7729920 ACCTTTTATG 7729930 ATTTTTAT-AAAATTATAAA-AT 1 ATTTTTATAAAAATTATAAATAT * 7729951 ATTTTTATAAAAATTTTAAATAT 1 ATTTTTATAAAAATTATAAATAT 7729974 ATTTT 1 ATTTT 7729979 ATTAATTTCA Statistics Matches: 25, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 21 8 0.32 22 10 0.40 23 7 0.28 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (23 bp): ATTTTTATAAAAATTATAAATAT Found at i:7732635 original size:24 final size:24 Alignment explanation
Indices: 7732587--7732643 Score: 66 Period size: 24 Copynumber: 2.4 Consensus size: 24 7732577 AATAAAAAAC * 7732587 AATAGTAATAATACTAAGATCAGT 1 AATAGTAATAATACTAAGATAAGT 7732611 AATAGTAATAATTA-TAATGA-AAGT 1 AATAGTAATAA-TACTAA-GATAAGT 7732635 AA-AGTAATA 1 AATAGTAATA 7732644 CTAAATACGA Statistics Matches: 30, Mismatches: 1, Indels: 5 0.83 0.03 0.14 Matches are distributed among these distances: 23 7 0.23 24 19 0.63 25 4 0.13 ACGTcount: A:0.54, C:0.04, G:0.12, T:0.30 Consensus pattern (24 bp): AATAGTAATAATACTAAGATAAGT Found at i:7732797 original size:24 final size:24 Alignment explanation
Indices: 7732770--7732835 Score: 70 Period size: 22 Copynumber: 2.9 Consensus size: 24 7732760 ATAGTTAAAA * 7732770 ATACTACTATATGAAT-ACATATAT 1 ATACTACTATAT-AATAAAATATAT 7732794 ATAC-A-TATATAATAAAATATAT 1 ATACTACTATATAATAAAATATAT 7732816 ATA-TACTA-ATAATAATAATA 1 ATACTACTATATAATAA-AATA 7732836 ATAATAATAA Statistics Matches: 37, Mismatches: 1, Indels: 9 0.79 0.02 0.19 Matches are distributed among these distances: 21 3 0.08 22 23 0.62 23 7 0.19 24 4 0.11 ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36 Consensus pattern (24 bp): ATACTACTATATAATAAAATATAT Found at i:7732830 original size:3 final size:3 Alignment explanation
Indices: 7732802--7732880 Score: 106 Period size: 3 Copynumber: 26.0 Consensus size: 3 7732792 ATATACATAT * 7732802 ATA ATA A-A ATA TATA TATA CTA ATA ATA ATA ATA ATA ATA ATA ATA 1 ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA * * 7732848 ATA ATA ATA ATA ATA ATA ATA AGA GTA ATA ATA 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 7732881 TTGAAATCCA Statistics Matches: 68, Mismatches: 6, Indels: 4 0.87 0.08 0.05 Matches are distributed among these distances: 2 2 0.03 3 59 0.87 4 7 0.10 ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33 Consensus pattern (3 bp): ATA Found at i:7732942 original size:26 final size:28 Alignment explanation
Indices: 7732891--7732942 Score: 65 Period size: 26 Copynumber: 1.9 Consensus size: 28 7732881 TTGAAATCCA * 7732891 AAAAGTAAATATAATATATAAAAATATT 1 AAAAGTAAATATAATATAGAAAAATATT 7732919 AAAA-TAAA-ATAAT-TAGAAACAATA 1 AAAAGTAAATATAATATAGAAA-AATA 7732943 CTATACATAA Statistics Matches: 22, Mismatches: 1, Indels: 4 0.81 0.04 0.15 Matches are distributed among these distances: 25 5 0.23 26 9 0.41 27 4 0.18 28 4 0.18 ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27 Consensus pattern (28 bp): AAAAGTAAATATAATATAGAAAAATATT Found at i:7733035 original size:3 final size:3 Alignment explanation
Indices: 7733027--7733066 Score: 53 Period size: 3 Copynumber: 13.3 Consensus size: 3 7733017 AAATAGGTAA * * * 7733027 AAT AAT AAT AGT AAA AAT AAT AAT AAT AAA AAT AAT AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A 7733067 TGTGAAGGTT Statistics Matches: 31, Mismatches: 6, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 3 31 1.00 ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28 Consensus pattern (3 bp): AAT Found at i:7733036 original size:15 final size:15 Alignment explanation
Indices: 7733025--7733066 Score: 75 Period size: 15 Copynumber: 2.8 Consensus size: 15 7733015 AAAAATAGGT 7733025 AAAATAATAATAGTA 1 AAAATAATAATAGTA * 7733040 AAAATAATAATAATA 1 AAAATAATAATAGTA 7733055 AAAATAATAATA 1 AAAATAATAATA 7733067 TGTGAAGGTT Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 15 26 1.00 ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26 Consensus pattern (15 bp): AAAATAATAATAGTA Found at i:7733054 original size:24 final size:24 Alignment explanation
Indices: 7733013--7733060 Score: 62 Period size: 24 Copynumber: 2.0 Consensus size: 24 7733003 TATAATAGGG * * 7733013 GTAAAAATAGGTAAAATAATAATA 1 GTAAAAATAGATAAAATAAAAATA 7733037 GTAAAAATA-ATAATAATAAAAATA 1 GTAAAAATAGATAA-AATAAAAATA 7733061 ATAATATGTG Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 23 3 0.14 24 18 0.86 ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25 Consensus pattern (24 bp): GTAAAAATAGATAAAATAAAAATA Found at i:7733433 original size:31 final size:30 Alignment explanation
Indices: 7733370--7733433 Score: 76 Period size: 30 Copynumber: 2.1 Consensus size: 30 7733360 TAAAAGTGAT * ** 7733370 AAAATAACAAATATTTAATTGAAGATATTA 1 AAAACAACAAATATTTAAAAGAAGATATTA 7733400 AAAACAACAAATATTTAGAAAGTAAG-TATTA 1 AAAACAACAAATATTTA-AAAG-AAGATATTA 7733431 AAA 1 AAA 7733434 TCCTTAATAT Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 30 16 0.55 31 10 0.34 32 3 0.10 ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28 Consensus pattern (30 bp): AAAACAACAAATATTTAAAAGAAGATATTA Found at i:7737068 original size:26 final size:26 Alignment explanation
Indices: 7736996--7737078 Score: 132 Period size: 26 Copynumber: 3.2 Consensus size: 26 7736986 TGATACAAAT * * * 7736996 TGATAATAGGTTAGGTAAATATTCCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7737022 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7737048 TGATAATGGGTTAGGTAAATGTTT-A 1 TGATAATGGGTTAGGTAAATGTTTCA 7737073 TGATAA 1 TGATAA 7737079 GAATTTATGT Statistics Matches: 54, Mismatches: 3, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 25 7 0.13 26 47 0.87 ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37 Consensus pattern (26 bp): TGATAATGGGTTAGGTAAATGTTTCA Found at i:7741340 original size:24 final size:26 Alignment explanation
Indices: 7741304--7741352 Score: 66 Period size: 25 Copynumber: 2.0 Consensus size: 26 7741294 TCAAACATGC 7741304 ATTTAGGTCAATTTAAC-CCTAGGGT 1 ATTTAGGTCAATTTAACTCCTAGGGT * * 7741329 ATTTCGGT-AATTTATCTCCTAGGG 1 ATTTAGGTCAATTTAACTCCTAGGG 7741353 GTAAAACTGT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 24 7 0.33 25 14 0.67 ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39 Consensus pattern (26 bp): ATTTAGGTCAATTTAACTCCTAGGGT Found at i:7742871 original size:26 final size:26 Alignment explanation
Indices: 7742835--7742944 Score: 184 Period size: 26 Copynumber: 4.2 Consensus size: 26 7742825 ACATGAATTC 7742835 TTATCATGAAACATTTACCTAACCCA 1 TTATCATGAAACATTTACCTAACCCA 7742861 TTATCATGAAACATTTACCTAACCCA 1 TTATCATGAAACATTTACCTAACCCA * * 7742887 TTATCATGGAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACCCA * * 7742913 TTATCATGGAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACCCA 7742939 TTATCA 1 TTATCA 7742945 ATTTGTATCA Statistics Matches: 82, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 26 82 1.00 ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34 Consensus pattern (26 bp): TTATCATGAAACATTTACCTAACCCA Found at i:7744417 original size:13 final size:13 Alignment explanation
Indices: 7744399--7744425 Score: 54 Period size: 13 Copynumber: 2.1 Consensus size: 13 7744389 TAATATAAAT 7744399 AGACATATATCCA 1 AGACATATATCCA 7744412 AGACATATATCCA 1 AGACATATATCCA 7744425 A 1 A 7744426 TCCACCAAGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22 Consensus pattern (13 bp): AGACATATATCCA Found at i:7746259 original size:7 final size:7 Alignment explanation
Indices: 7746247--7746278 Score: 64 Period size: 7 Copynumber: 4.6 Consensus size: 7 7746237 GCTTCCACGT 7746247 GAACTTG 1 GAACTTG 7746254 GAACTTG 1 GAACTTG 7746261 GAACTTG 1 GAACTTG 7746268 GAACTTG 1 GAACTTG 7746275 GAAC 1 GAAC 7746279 CAGCTTTCCA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 25 1.00 ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25 Consensus pattern (7 bp): GAACTTG Found at i:7747691 original size:12 final size:12 Alignment explanation
Indices: 7747674--7747698 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 7747664 AATGATGTAA 7747674 AATAAATAAATG 1 AATAAATAAATG 7747686 AATAAATAAATG 1 AATAAATAAATG 7747698 A 1 A 7747699 TATGCAATGA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24 Consensus pattern (12 bp): AATAAATAAATG Found at i:7747868 original size:18 final size:18 Alignment explanation
Indices: 7747839--7747881 Score: 59 Period size: 18 Copynumber: 2.4 Consensus size: 18 7747829 AATAATAGCA * * 7747839 AATAAAAATAGTGCTAAT 1 AATAATAATAGTGATAAT * 7747857 AGTAATAATAGTGATAAT 1 AATAATAATAGTGATAAT 7747875 AATAATA 1 AATAATA 7747882 GTATGAAAAA Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 18 21 1.00 ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30 Consensus pattern (18 bp): AATAATAATAGTGATAAT Found at i:7747934 original size:26 final size:25 Alignment explanation
Indices: 7747905--7747963 Score: 68 Period size: 25 Copynumber: 2.3 Consensus size: 25 7747895 AACAATAGTA 7747905 AAATAAT-GATATTAATACCTAAATAT 1 AAATAATAGATA-TAATACCTAAA-AT * 7747931 AAAT-ATAGATATAATATCTAAAAT 1 AAATAATAGATATAATACCTAAAAT 7747955 ATAATAATA 1 A-AATAATA 7747964 ATGAAAATAT Statistics Matches: 29, Mismatches: 1, Indels: 6 0.81 0.03 0.17 Matches are distributed among these distances: 24 3 0.10 25 15 0.52 26 11 0.38 ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34 Consensus pattern (25 bp): AAATAATAGATATAATACCTAAAAT Found at i:7747993 original size:17 final size:18 Alignment explanation
Indices: 7747950--7747995 Score: 62 Period size: 17 Copynumber: 2.7 Consensus size: 18 7747940 TATAATATCT 7747950 AAAATAT-AATAATAATG 1 AAAATATAAATAATAATG 7747967 AAAATATAAATACATAA-G 1 AAAATATAAATA-ATAATG 7747985 -AAATATAAATA 1 AAAATATAAATA 7747996 GATGAGTAAT Statistics Matches: 27, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 17 18 0.67 18 5 0.19 19 4 0.15 ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26 Consensus pattern (18 bp): AAAATATAAATAATAATG Found at i:7748550 original size:3 final size:3 Alignment explanation
Indices: 7748544--7748605 Score: 124 Period size: 3 Copynumber: 20.7 Consensus size: 3 7748534 TAAAAAGAAG 7748544 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 7748592 ATA ATA ATA ATA AT 1 ATA ATA ATA ATA AT 7748606 GTGAGTAGAT Statistics Matches: 59, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 59 1.00 ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34 Consensus pattern (3 bp): ATA Found at i:7760640 original size:28 final size:27 Alignment explanation
Indices: 7760588--7760693 Score: 72 Period size: 28 Copynumber: 3.7 Consensus size: 27 7760578 CTATTCAGAA * * 7760588 ATCAGTGTTAA-CTAGGCCTTAGCCCAT 1 ATCAGTATTAATCTGGGCC-TAGCCCAT * 7760615 ATCAGTATTAATCTGGGCCATAGCCCCT 1 ATCAGTATTAATCTGGGCC-TAGCCCAT ** 7760643 -TACAGTAACAGAGTATACTGGGCCTAGCCCAT 1 AT-CAGT-A-TTA--AT-CTGGGCCTAGCCCAT * 7760675 ATCAGTATCAATCTGGGCC 1 ATCAGTATTAATCTGGGCC 7760694 GTAACCCTAT Statistics Matches: 62, Mismatches: 9, Indels: 16 0.71 0.10 0.18 Matches are distributed among these distances: 27 18 0.29 28 19 0.31 29 1 0.02 30 2 0.03 31 1 0.02 32 13 0.21 33 8 0.13 ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26 Consensus pattern (27 bp): ATCAGTATTAATCTGGGCCTAGCCCAT Found at i:7760725 original size:60 final size:59 Alignment explanation
Indices: 7760602--7760736 Score: 157 Period size: 60 Copynumber: 2.2 Consensus size: 59 7760592 GTGTTAACTA * * * 7760602 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG 1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAACCCATTACAGT-ACAGAGTATACTG * * 7760663 GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAACCCTATTACAAGT-C-GAGATATATTG 1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAACCC-ATTAC-AGTACAGAG-TATACTG * 7760723 GGCCTTGCCCATAT 1 GGCCTAGCCCATAT 7760737 TAACATAGTT Statistics Matches: 65, Mismatches: 6, Indels: 7 0.83 0.08 0.09 Matches are distributed among these distances: 59 3 0.05 60 51 0.78 61 8 0.12 62 3 0.05 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27 Consensus pattern (59 bp): GGCCTAGCCCATATCAGTATCAATCTGGGCCATAACCCATTACAGTACAGAGTATACTG Found at i:7762105 original size:17 final size:19 Alignment explanation
Indices: 7762083--7762121 Score: 55 Period size: 19 Copynumber: 2.2 Consensus size: 19 7762073 TGAGAGAAAG * 7762083 ATAGAA-AA-GAATAAAAA 1 ATAGAAGAAGGAAAAAAAA 7762100 ATAGAAGAAGGAAAAAAAA 1 ATAGAAGAAGGAAAAAAAA 7762119 ATA 1 ATA 7762122 AATCCTAAAG Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 17 6 0.32 18 2 0.11 19 11 0.58 ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10 Consensus pattern (19 bp): ATAGAAGAAGGAAAAAAAA Found at i:7774150 original size:50 final size:50 Alignment explanation
Indices: 7774075--7774177 Score: 206 Period size: 50 Copynumber: 2.1 Consensus size: 50 7774065 CTAAAACCAC 7774075 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA 1 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA 7774125 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA 1 ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA 7774175 ATT 1 ATT 7774178 TAGAGCTAAG Statistics Matches: 53, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 50 53 1.00 ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31 Consensus pattern (50 bp): ATTGCCAATTAGATAACTGAGGATGTTACAACATTGATGCTTAATCAACA Found at i:7777886 original size:26 final size:26 Alignment explanation
Indices: 7777847--7777982 Score: 227 Period size: 26 Copynumber: 5.2 Consensus size: 26 7777837 TGATACAAAT * * * 7777847 TGATAATAGATTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7777873 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTTCA * * 7777899 TGATAATAGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7777925 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7777951 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTTCA 7777977 TGATAA 1 TGATAA 7777983 GAATATCATG Statistics Matches: 103, Mismatches: 7, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 26 103 1.00 ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37 Consensus pattern (26 bp): TGATAATGGGTTAGGTAAATGTTTCA Found at i:7779648 original size:27 final size:27 Alignment explanation
Indices: 7779607--7779745 Score: 174 Period size: 27 Copynumber: 5.2 Consensus size: 27 7779597 GAGGAAGCGT * 7779607 TCTGGTGGCTATGCCACAAATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA 7779634 TCTGGTGGCTCTGCCACAAATATCTGA 1 TCTGGTGGCTCTGCCACAAATATCTGA * * 7779661 TCTGGTGGCTCTGCCACATATATCTGT 1 TCTGGTGGCTCTGCCACAAATATCTGA * * 7779688 TCTGGTGGCTCTG-CACGATTATCTGTA 1 TCTGGTGGCTCTGCCACAAATATCTG-A * * * * 7779715 TCTGGTGACTCTGTCAC-ATTATCTGT 1 TCTGGTGGCTCTGCCACAAATATCTGA 7779741 TCTGG 1 TCTGG 7779746 CAGCTATGCT Statistics Matches: 101, Mismatches: 9, Indels: 5 0.88 0.08 0.04 Matches are distributed among these distances: 26 14 0.14 27 84 0.83 28 3 0.03 ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35 Consensus pattern (27 bp): TCTGGTGGCTCTGCCACAAATATCTGA Found at i:7779692 original size:54 final size:54 Alignment explanation
Indices: 7779607--7779745 Score: 192 Period size: 54 Copynumber: 2.6 Consensus size: 54 7779597 GAGGAAGCGT * * * 7779607 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTG-CACAAATATCTGTA * * 7779661 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACGATTATCTGTA 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACAAATATCTGTA * * 7779715 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG 1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG 7779746 CAGCTATGCT Statistics Matches: 77, Mismatches: 7, Indels: 3 0.89 0.08 0.03 Matches are distributed among these distances: 53 22 0.29 54 55 0.71 ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35 Consensus pattern (54 bp): TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCACAAATATCTGTA Found at i:7780987 original size:10 final size:10 Alignment explanation
Indices: 7780960--7781007 Score: 62 Period size: 10 Copynumber: 4.8 Consensus size: 10 7780950 TTAAATTCTA * 7780960 AAAGATAAAT 1 AAAGATAATT 7780970 ACAA-ATAATT 1 A-AAGATAATT 7780980 AAAGATAATT 1 AAAGATAATT * 7780990 AAAGATAATA 1 AAAGATAATT 7781000 AAAGATAA 1 AAAGATAA 7781008 ATGAAAATAA Statistics Matches: 34, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 9 2 0.06 10 30 0.88 11 2 0.06 ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23 Consensus pattern (10 bp): AAAGATAATT Found at i:7781017 original size:20 final size:19 Alignment explanation
Indices: 7780958--7781017 Score: 75 Period size: 20 Copynumber: 3.0 Consensus size: 19 7780948 AATTAAATTC 7780958 TAAAAGATAAATACAAATAA 1 TAAAAGATAAATA-AAATAA * * 7780978 TTAAAGATAATTAAAGATAA 1 TAAAAGATAAATAAA-ATAA 7780998 TAAAAGATAAATGAAAATAA 1 TAAAAGATAAAT-AAAATAA 7781018 ATCCTAAAAT Statistics Matches: 34, Mismatches: 4, Indels: 4 0.81 0.10 0.10 Matches are distributed among these distances: 19 2 0.06 20 29 0.85 21 3 0.09 ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23 Consensus pattern (19 bp): TAAAAGATAAATAAAATAA Found at i:7781619 original size:11 final size:11 Alignment explanation
Indices: 7781605--7781643 Score: 51 Period size: 11 Copynumber: 3.5 Consensus size: 11 7781595 TTTTCTTCTT 7781605 TTTTTAATTAA 1 TTTTTAATTAA 7781616 TTTTTAATTAA 1 TTTTTAATTAA * * 7781627 TTAATTAATTTA 1 TT-TTTAATTAA 7781639 TTTTT 1 TTTTT 7781644 GCTTAGGAAT Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 11 15 0.62 12 9 0.38 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (11 bp): TTTTTAATTAA Found at i:7782890 original size:5 final size:5 Alignment explanation
Indices: 7782880--7782947 Score: 70 Period size: 5 Copynumber: 13.4 Consensus size: 5 7782870 AGTAATAAAT * 7782880 AATAA AATAA AATAA AAT-A AATAA TAA-AT AATAA AATAA AATAA AA-ATA 1 AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATA-A 7782929 AATAAA AATAAA AATAA AA 1 AAT-AA AAT-AA AATAA AA 7782948 ATTGGGTTGC Statistics Matches: 55, Mismatches: 2, Indels: 12 0.80 0.03 0.17 Matches are distributed among these distances: 4 7 0.13 5 35 0.64 6 12 0.22 7 1 0.02 ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21 Consensus pattern (5 bp): AATAA Found at i:7782908 original size:29 final size:30 Alignment explanation
Indices: 7782863--7782947 Score: 133 Period size: 29 Copynumber: 2.9 Consensus size: 30 7782853 TCACCCAAAC 7782863 AAAATAAAGTAATAAATAATAAAATAAAAT- 1 AAAATAAA-TAATAAATAATAAAATAAAATA 7782893 AAAATAAATAATAAATAATAAAATAAAATA 1 AAAATAAATAATAAATAATAAAATAAAATA 7782923 AAAATAAATAA-AAAT-A-AAAATAAAA 1 AAAATAAATAATAAATAATAAAATAAAA 7782948 ATTGGGTTGC Statistics Matches: 54, Mismatches: 0, Indels: 5 0.92 0.00 0.08 Matches are distributed among these distances: 27 9 0.17 28 1 0.02 29 25 0.46 30 19 0.35 ACGTcount: A:0.78, C:0.00, G:0.01, T:0.21 Consensus pattern (30 bp): AAAATAAATAATAAATAATAAAATAAAATA Found at i:7786971 original size:131 final size:130 Alignment explanation
Indices: 7786810--7787146 Score: 559 Period size: 131 Copynumber: 2.6 Consensus size: 130 7786800 TAATTATTCA * 7786810 TTTAAAAATTCTTAAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC 1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGG-AATCGTGCCCTATC * * * * 7786875 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATTGATTATTCCTTTGGGATTTCATTCATGT 65 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT 7786940 C 130 C 7786941 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCAGGGAATCGTGCCCTATC 1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATC * 7787006 GTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT 65 GTGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGT 7787071 C 130 C * * 7787072 TTTAAAAATTCTTTAAAATGAAGGAAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTA-C 1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATC 7787136 TGTGCTGGGTT 65 -GTGCTGGGTT 7787147 TCAATTTTTT Statistics Matches: 195, Mismatches: 8, Indels: 6 0.93 0.04 0.03 Matches are distributed among these distances: 130 2 0.01 131 190 0.97 132 3 0.02 ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36 Consensus pattern (130 bp): TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG TGCTGGGTTGCGATTTCTCGTTCATTCAAAACAATCGAATATTCCTTTGGAATTTCAGTCATGTC Found at i:7796900 original size:21 final size:21 Alignment explanation
Indices: 7796876--7796932 Score: 69 Period size: 21 Copynumber: 2.6 Consensus size: 21 7796866 GACACATAAA 7796876 GTGCCTAAAACGAAACACGAG 1 GTGCCTAAAACGAAACACGAG * * * 7796897 GTGCCTGATACGACACACGAG 1 GTGCCTAAAACGAAACACGAG 7796918 GTGCCTGAAATACGA 1 GTGCCT-AAA-ACGA 7796933 TACATAAAGT Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 21 24 0.83 22 1 0.03 23 4 0.14 ACGTcount: A:0.35, C:0.25, G:0.26, T:0.14 Consensus pattern (21 bp): GTGCCTAAAACGAAACACGAG Found at i:7797344 original size:15 final size:15 Alignment explanation
Indices: 7797319--7797376 Score: 89 Period size: 15 Copynumber: 3.8 Consensus size: 15 7797309 TCATATATAT 7797319 TATATAATTCAATCAA 1 TATA-AATTCAATCAA 7797335 TATAAATTCAATCAA 1 TATAAATTCAATCAA * * 7797350 AATAATTTCAATCAA 1 TATAAATTCAATCAA 7797365 TATAAATTCAAT 1 TATAAATTCAAT 7797377 AAATTCATCG Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 15 34 0.89 16 4 0.11 ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36 Consensus pattern (15 bp): TATAAATTCAATCAA Found at i:7798659 original size:5 final size:5 Alignment explanation
Indices: 7798646--7798718 Score: 128 Period size: 5 Copynumber: 14.2 Consensus size: 5 7798636 TTCTTTAGTT 7798646 TATATA TATAA TATAA TATATA TATAA TATAA TATAA TATAA TATAA TATAA 1 TATA-A TATAA TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATAA 7798698 TATAA TATAA TATAA TATAA T 1 TATAA TATAA TATAA TATAA T 7798719 TAAAACATAA Statistics Matches: 66, Mismatches: 0, Indels: 3 0.96 0.00 0.04 Matches are distributed among these distances: 5 57 0.86 6 9 0.14 ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42 Consensus pattern (5 bp): TATAA Found at i:7798754 original size:8 final size:8 Alignment explanation
Indices: 7798741--7798769 Score: 58 Period size: 8 Copynumber: 3.6 Consensus size: 8 7798731 TATCTTTATT 7798741 ATATAATA 1 ATATAATA 7798749 ATATAATA 1 ATATAATA 7798757 ATATAATA 1 ATATAATA 7798765 ATATA 1 ATATA 7798770 CTAAACATAA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 21 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): ATATAATA Found at i:7802669 original size:5 final size:5 Alignment explanation
Indices: 7802659--7802690 Score: 57 Period size: 5 Copynumber: 6.6 Consensus size: 5 7802649 TTACTGTGAA 7802659 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA 1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA 7802691 GAACACACAA Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 4 4 0.15 5 22 0.85 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (5 bp): AAAAT Found at i:7802684 original size:9 final size:9 Alignment explanation
Indices: 7802660--7802690 Score: 53 Period size: 9 Copynumber: 3.3 Consensus size: 9 7802650 TACTGTGAAA 7802660 AAATAAAAT 1 AAATAAAAT 7802669 AAAATAAAAT 1 -AAATAAAAT 7802679 AAATAAAAT 1 AAATAAAAT 7802688 AAA 1 AAA 7802691 GAACACACAA Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 9 12 0.57 10 9 0.43 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (9 bp): AAATAAAAT Found at i:7807227 original size:19 final size:19 Alignment explanation
Indices: 7807182--7807227 Score: 51 Period size: 19 Copynumber: 2.4 Consensus size: 19 7807172 AATAAATAAA * 7807182 AAATTTATATTATTTAATT 1 AAATTTATATTATTAAATT 7807201 ATAA-TTATATT-TTAAAATT 1 A-AATTTATATTATT-AAATT 7807220 AAATTTAT 1 AAATTTAT 7807228 GCCCTAAAAT Statistics Matches: 23, Mismatches: 1, Indels: 6 0.77 0.03 0.20 Matches are distributed among these distances: 18 4 0.17 19 17 0.74 20 2 0.09 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (19 bp): AAATTTATATTATTAAATT Found at i:7807464 original size:62 final size:62 Alignment explanation
Indices: 7807366--7807488 Score: 185 Period size: 62 Copynumber: 2.0 Consensus size: 62 7807356 AGATGTTGGG * * * 7807366 CACGAGTTTTAAAGTTGCTTCATGCACAAAGTGAGGATCAAACACTCGGTGAGGATCAAACC 1 CACGAGTTTTAAAGTTGCTTCATGCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAACC * * 7807428 CACGAGTTTTAAAGTTGCTTCATATC-CAAGGCGAGGATCAAACACTCGGCGAAGATCAAAC 1 CACGAGTTTTAAAGTTGCTTCAT-GCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAAC 7807489 TCTCAACCAC Statistics Matches: 55, Mismatches: 5, Indels: 2 0.89 0.08 0.03 Matches are distributed among these distances: 62 54 0.98 63 1 0.02 ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22 Consensus pattern (62 bp): CACGAGTTTTAAAGTTGCTTCATGCACAAAGCGAGGATCAAACACTCGGCGAAGATCAAACC Found at i:7811560 original size:13 final size:15 Alignment explanation
Indices: 7811525--7811564 Score: 59 Period size: 14 Copynumber: 2.9 Consensus size: 15 7811515 AAACCCATCT 7811525 ATAACCC-AACCTCA 1 ATAACCCAAACCTCA 7811539 ATAACCCAAACC-CA 1 ATAACCCAAACCTCA 7811553 AT-ACCCAAACCT 1 ATAACCCAAACCT 7811565 ACCCTAAGCC Statistics Matches: 24, Mismatches: 0, Indels: 4 0.86 0.00 0.14 Matches are distributed among these distances: 13 9 0.38 14 11 0.46 15 4 0.17 ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12 Consensus pattern (15 bp): ATAACCCAAACCTCA Found at i:7812167 original size:11 final size:11 Alignment explanation
Indices: 7812151--7812195 Score: 90 Period size: 11 Copynumber: 4.1 Consensus size: 11 7812141 TCCCTTCCCC 7812151 CCTTCTCTCTT 1 CCTTCTCTCTT 7812162 CCTTCTCTCTT 1 CCTTCTCTCTT 7812173 CCTTCTCTCTT 1 CCTTCTCTCTT 7812184 CCTTCTCTCTT 1 CCTTCTCTCTT 7812195 C 1 C 7812196 TTTTTTTTTC Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 34 1.00 ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53 Consensus pattern (11 bp): CCTTCTCTCTT Found at i:7812615 original size:20 final size:17 Alignment explanation
Indices: 7812590--7812642 Score: 52 Period size: 20 Copynumber: 2.8 Consensus size: 17 7812580 TTCTTTATTA 7812590 AATATTGTTATTATTATTC 1 AATATT-TTATTATTA-TC * 7812609 TAATATTATTAATATTATC 1 -AATATT-TTATTATTATC 7812628 AATATATTTATTATT 1 AATAT-TTTATTATT 7812643 TTTAGTGTAT Statistics Matches: 29, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 18 12 0.41 19 3 0.10 20 14 0.48 ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57 Consensus pattern (17 bp): AATATTTTATTATTATC Found at i:7812803 original size:22 final size:22 Alignment explanation
Indices: 7812761--7812842 Score: 60 Period size: 22 Copynumber: 3.6 Consensus size: 22 7812751 AATACTAGTG * 7812761 TATATTTTATTATGTATGTATA 1 TATATTTTATTATATATGTATA * 7812783 TATATTCTTTTTATATA-GTAT- 1 TATATT-TTATTATATATGTATA * * 7812804 TATCGTTTCTATTATTATATCTATA 1 TAT-ATTT-TATTA-TATATGTATA * 7812829 TTTATGTTTATTAT 1 TATAT-TTTATTAT 7812843 TTTCACTATT Statistics Matches: 46, Mismatches: 7, Indels: 13 0.70 0.11 0.20 Matches are distributed among these distances: 21 4 0.09 22 16 0.35 23 13 0.28 24 9 0.20 25 4 0.09 ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61 Consensus pattern (22 bp): TATATTTTATTATATATGTATA Found at i:7813051 original size:21 final size:21 Alignment explanation
Indices: 7813020--7813074 Score: 67 Period size: 21 Copynumber: 2.6 Consensus size: 21 7813010 TAAATATTAT * 7813020 ATTTTCTATATATTATGTATAC 1 ATTTT-TATATATTACGTATAC * 7813042 ATTTTTATATATTACGTATAT 1 ATTTTTATATATTACGTATAC * 7813063 ATCTTTA-ATATT 1 ATTTTTATATATT 7813075 GCACTTTTAT Statistics Matches: 30, Mismatches: 3, Indels: 2 0.86 0.09 0.06 Matches are distributed among these distances: 20 5 0.17 21 20 0.67 22 5 0.17 ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56 Consensus pattern (21 bp): ATTTTTATATATTACGTATAC Found at i:7816651 original size:26 final size:24 Alignment explanation
Indices: 7816620--7816715 Score: 79 Period size: 24 Copynumber: 3.9 Consensus size: 24 7816610 GTTAAAAATG 7816620 AATTGACTTCGGCACTATGTGTGCAA 1 AATTGA-TT-GGCACTATGTGTGCAA * * * * 7816646 ATTTGAATGGCACTGTGTGTACAA 1 AATTGATTGGCACTATGTGTGCAA * 7816670 AATTG-TATGGCACTATGTGTGCAG 1 AATTGAT-TGGCACTATGTGTGCAA * * 7816694 ACTTG-TATAGCACTATGTGTGC 1 AATTGAT-TGGCACTATGTGTGC 7816716 GGATTTAAAT Statistics Matches: 58, Mismatches: 11, Indels: 4 0.79 0.15 0.05 Matches are distributed among these distances: 24 52 0.90 25 1 0.02 26 5 0.09 ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33 Consensus pattern (24 bp): AATTGATTGGCACTATGTGTGCAA Found at i:7816657 original size:24 final size:24 Alignment explanation
Indices: 7816630--7816715 Score: 109 Period size: 24 Copynumber: 3.6 Consensus size: 24 7816620 AATTGACTTC * * 7816630 GGCACTATGTGTGCAAATTTGAAT 1 GGCACTATGTGTGCAAAATTGTAT * * 7816654 GGCACTGTGTGTACAAAATTGTAT 1 GGCACTATGTGTGCAAAATTGTAT * * 7816678 GGCACTATGTGTGCAGACTTGTAT 1 GGCACTATGTGTGCAAAATTGTAT * 7816702 AGCACTATGTGTGC 1 GGCACTATGTGTGC 7816716 GGATTTAAAT Statistics Matches: 53, Mismatches: 9, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 53 1.00 ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33 Consensus pattern (24 bp): GGCACTATGTGTGCAAAATTGTAT Found at i:7826208 original size:40 final size:39 Alignment explanation
Indices: 7826159--7826236 Score: 111 Period size: 40 Copynumber: 2.0 Consensus size: 39 7826149 ATGCTTGAAG * * 7826159 AAAAGAAAATCAAGATGAAAACCTGAAAAAGGGCATCTTA 1 AAAAAAAAATCAAGATGAAAACCCG-AAAAGGGCATCTTA * * 7826199 AAAAAAAAATCAAGGTGAAAACCCGAAAAGGGCGTCTT 1 AAAAAAAAATCAAGATGAAAACCCGAAAAGGGCATCTT 7826237 GATTAACACA Statistics Matches: 34, Mismatches: 4, Indels: 1 0.87 0.10 0.03 Matches are distributed among these distances: 39 12 0.35 40 22 0.65 ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14 Consensus pattern (39 bp): AAAAAAAAATCAAGATGAAAACCCGAAAAGGGCATCTTA Found at i:7827283 original size:88 final size:87 Alignment explanation
Indices: 7827118--7827359 Score: 205 Period size: 84 Copynumber: 2.8 Consensus size: 87 7827108 TTACTGTTTG * * * * * * 7827118 TCAAAAAAAATTCAAATCATATTGCGAGAAGTAAGTTAAGCCTCGGGACACGCTGAGGTATTCTC 1 TCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGCTATTCTC 7827183 AATTTCTGC-TTTTAAT-TCATGTCT 65 AATTTC-GCTTTTTAATGTC-TGT-T * * * 7827207 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCGCGTGCTGAGCTACTTC 1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACAC--GCTGAGCTA-TTC * 7827272 -CAATTTC-CTTTTTGATGTCTGTT 63 TCAATTTCGCTTTTTAATGTCTGTT ** * * * * 7827295 T----TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTC 1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGCTATTCTC 7827355 AATTT 65 AATTT 7827360 ATATTTTTCA Statistics Matches: 127, Mismatches: 19, Indels: 21 0.76 0.11 0.13 Matches are distributed among these distances: 81 2 0.02 82 13 0.10 84 37 0.29 85 1 0.01 88 35 0.28 89 19 0.15 90 17 0.13 91 3 0.02 ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33 Consensus pattern (87 bp): TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGCTATTCTCA ATTTCGCTTTTTAATGTCTGTT Found at i:7827647 original size:15 final size:15 Alignment explanation
Indices: 7827627--7827656 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 7827617 ATATTTTCAG * 7827627 TTTCTGTTTTTCAAA 1 TTTCTGTTTGTCAAA 7827642 TTTCTGTTTGTCAAA 1 TTTCTGTTTGTCAAA 7827657 AGTCAACTCA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.20, C:0.13, G:0.10, T:0.57 Consensus pattern (15 bp): TTTCTGTTTGTCAAA Found at i:7827663 original size:90 final size:85 Alignment explanation
Indices: 7827444--7827728 Score: 252 Period size: 90 Copynumber: 3.2 Consensus size: 85 7827434 ATTCTGTTGC * * * 7827444 TCAAATTCTGTTTTT-AATTTCTATTTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTTAG 1 TCAATTTCTGTTTTTCAATTTC--TGTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAG * 7827508 CCTCAGGACACGCTGAGGTAATT 63 CCTCAGGACACGCTGAGATAATT * * 7827531 TCAATTTCTGTTTCTCAATTTTTGCTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG 1 TCAATTTCTGTTTTTCAATTTCTG-TTTTC----AAAATCAACTCATATTGCGAGAGGTGAGTTG * * * * * 7827596 GGCCT-TGGCTCATATGCTGAGATATTT 61 AGCCTCAGG---ACACGCTGAGATAATT * * 7827623 TCAGTTTCTGTTTTTCAAATTTCTGTTTGTCAAAAGTCAACTCATATTACGAGAGGTGAGTTGAG 1 TCAATTTCTGTTTTTC-AATTTCTGTTT-TCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG * * * 7827688 CCTCAGAACACGCTAAGGT-ATT 63 CCTCAGGACACGCTGAGATAATT * * 7827710 TTAAGTTTCTGTTTGTCAA 1 TCAA-TTTCTGTTTTTCAA 7827729 GAATCAACTC Statistics Matches: 158, Mismatches: 26, Indels: 28 0.75 0.12 0.13 Matches are distributed among these distances: 86 2 0.01 87 23 0.15 88 24 0.15 89 6 0.04 90 64 0.41 91 1 0.01 92 29 0.18 93 9 0.06 ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39 Consensus pattern (85 bp): TCAATTTCTGTTTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT CAGGACACGCTGAGATAATT Found at i:7828469 original size:13 final size:15 Alignment explanation
Indices: 7828434--7828473 Score: 59 Period size: 14 Copynumber: 2.9 Consensus size: 15 7828424 AAACCCATCT 7828434 ATAACCC-AACCTCA 1 ATAACCCAAACCTCA 7828448 ATAACCCAAACC-CA 1 ATAACCCAAACCTCA 7828462 AT-ACCCAAACCT 1 ATAACCCAAACCT 7828474 ACCCTAAGCC Statistics Matches: 24, Mismatches: 0, Indels: 4 0.86 0.00 0.14 Matches are distributed among these distances: 13 9 0.38 14 11 0.46 15 4 0.17 ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12 Consensus pattern (15 bp): ATAACCCAAACCTCA Found at i:7829081 original size:11 final size:11 Alignment explanation
Indices: 7829049--7829082 Score: 59 Period size: 11 Copynumber: 3.1 Consensus size: 11 7829039 TCCCTTCCCC * 7829049 CCTTCTCTCTC 1 CCTTCTCTCTT 7829060 CCTTCTCTCTT 1 CCTTCTCTCTT 7829071 CCTTCTCTCTT 1 CCTTCTCTCTT 7829082 C 1 C 7829083 TTTTTTTTTT Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 11 22 1.00 ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50 Consensus pattern (11 bp): CCTTCTCTCTT Found at i:7829503 original size:20 final size:17 Alignment explanation
Indices: 7829478--7829530 Score: 52 Period size: 20 Copynumber: 2.8 Consensus size: 17 7829468 TTCTTTATTA 7829478 AATATTGTTATTATTATTC 1 AATATT-TTATTATTA-TC * 7829497 TAATATTATTAATATTATC 1 -AATATT-TTATTATTATC 7829516 AATATATTTATTATT 1 AATAT-TTTATTATT 7829531 TTTAGTGTAT Statistics Matches: 29, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 18 12 0.41 19 3 0.10 20 14 0.48 ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57 Consensus pattern (17 bp): AATATTTTATTATTATC Found at i:7829695 original size:22 final size:22 Alignment explanation
Indices: 7829653--7829734 Score: 60 Period size: 22 Copynumber: 3.6 Consensus size: 22 7829643 AATATTAGTG * 7829653 TATATTTTATTATGTATGTATA 1 TATATTTTATTATATATGTATA * 7829675 TATATTCTTTTTATATA-GTAT- 1 TATATT-TTATTATATATGTATA * * 7829696 TATCGTTTCTATTATTATATCTATA 1 TAT-ATTT-TATTA-TATATGTATA * 7829721 TTTATGTTTATTAT 1 TATAT-TTTATTAT 7829735 TTTCACTATT Statistics Matches: 46, Mismatches: 7, Indels: 13 0.70 0.11 0.20 Matches are distributed among these distances: 21 4 0.09 22 16 0.35 23 13 0.28 24 9 0.20 25 4 0.09 ACGTcount: A:0.28, C:0.05, G:0.06, T:0.61 Consensus pattern (22 bp): TATATTTTATTATATATGTATA Found at i:7829945 original size:22 final size:22 Alignment explanation
Indices: 7829919--7829961 Score: 59 Period size: 22 Copynumber: 2.0 Consensus size: 22 7829909 TAAATATTAT * * 7829919 ATTTTCTGTATATTATGTATAC 1 ATTTTCTATATATTACGTATAC * 7829941 ATTTTTTATATATTACGTATA 1 ATTTTCTATATATTACGTATA 7829962 TATCTTTAAT Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 22 18 1.00 ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56 Consensus pattern (22 bp): ATTTTCTATATATTACGTATAC Found at i:7829973 original size:22 final size:22 Alignment explanation
Indices: 7829927--7829973 Score: 58 Period size: 22 Copynumber: 2.1 Consensus size: 22 7829917 ATATTTTCTG * * * 7829927 TATATTATGTATACATTTTTTA 1 TATATTACGTATACATCTTTAA * 7829949 TATATTACGTATATATCTTTAA 1 TATATTACGTATACATCTTTAA 7829971 TAT 1 TAT 7829974 TGCACTTTTA Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55 Consensus pattern (22 bp): TATATTACGTATACATCTTTAA Found at i:7835866 original size:19 final size:19 Alignment explanation
Indices: 7835844--7835932 Score: 56 Period size: 19 Copynumber: 4.3 Consensus size: 19 7835834 TAATAATAAT 7835844 ATAAAATAATAATATGTAC 1 ATAAAATAATAATATGTAC * 7835863 ATAAAATACATATATATATATATGC 1 ATAAAAT--A-ATA-ATATGTA--C * 7835888 ATATAATAA-AAGTATGTA- 1 ATAAAATAATAA-TATGTAC * 7835906 ATAATAATAATAATATCTAC 1 ATAA-AATAATAATATGTAC 7835926 AATAAAA 1 -ATAAAA 7835933 GAAAATATTA Statistics Matches: 54, Mismatches: 5, Indels: 21 0.68 0.06 0.26 Matches are distributed among these distances: 18 3 0.06 19 17 0.31 20 5 0.09 21 11 0.20 22 4 0.07 23 7 0.13 25 7 0.13 ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33 Consensus pattern (19 bp): ATAAAATAATAATATGTAC Found at i:7836220 original size:39 final size:37 Alignment explanation
Indices: 7836123--7836220 Score: 99 Period size: 39 Copynumber: 2.6 Consensus size: 37 7836113 TATGGTATTT * * * * 7836123 AAAATATATATAT-ATATATGTATATAATAGTATTTA 1 AAAATATATACATAATATATATATATAATAGCATTAA * * * * 7836159 AGAATATATACATAAGAAATATATAACTAATGGCATTAA 1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA 7836198 AAAATATATACATAATATATATA 1 AAAATATATACATAATATATATA 7836221 AAATACCTAA Statistics Matches: 48, Mismatches: 11, Indels: 3 0.77 0.18 0.05 Matches are distributed among these distances: 36 11 0.23 37 7 0.15 38 1 0.02 39 29 0.60 ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36 Consensus pattern (37 bp): AAAATATATACATAATATATATATATAATAGCATTAA Found at i:7836716 original size:27 final size:30 Alignment explanation
Indices: 7836685--7836748 Score: 84 Period size: 29 Copynumber: 2.3 Consensus size: 30 7836675 TGGTTAGGTG 7836685 GTTAGGGTTTTT-TTTTTT-TT-TTTTTTT 1 GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT 7836712 GTTA-GGTTTTTCTTTTTTCTTCTTTTTTT 1 GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT * 7836741 -TTTGGGTT 1 GTTAGGGTT 7836749 AGGTTTTTTT Statistics Matches: 32, Mismatches: 1, Indels: 6 0.82 0.03 0.15 Matches are distributed among these distances: 26 7 0.22 27 10 0.31 28 4 0.12 29 11 0.34 ACGTcount: A:0.03, C:0.05, G:0.16, T:0.77 Consensus pattern (30 bp): GTTAGGGTTTTTCTTTTTTCTTCTTTTTTT Found at i:7836743 original size:34 final size:32 Alignment explanation
Indices: 7836692--7836756 Score: 94 Period size: 34 Copynumber: 2.0 Consensus size: 32 7836682 GTGGTTAGGG ** 7836692 TTTTTTTTTTTTTTTTTTTTGTTAGGTTTTTC 1 TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTC 7836724 TTTTTTCTTCTTTTTTTTTTGGGTTAGGTTTTT 1 TTTTTT-TT-TTTTTTTTTTGGGTTAGGTTTTT 7836757 TTTGGGGGGC Statistics Matches: 29, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 32 6 0.21 33 2 0.07 34 21 0.72 ACGTcount: A:0.03, C:0.05, G:0.12, T:0.80 Consensus pattern (32 bp): TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTC Found at i:7837806 original size:74 final size:74 Alignment explanation
Indices: 7837627--7837838 Score: 286 Period size: 77 Copynumber: 2.9 Consensus size: 74 7837617 GTGATCTGAA 7837627 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA-- * 7837692 ATGTGAACCGAG 63 ACGTGAACCGAG * * 7837704 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACCGAAATTGAAAATACCTCAACG 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG * * 7837769 TG-TCTTGAG 66 TGAAC-CGAG ** * * 7837778 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAA 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAA 7837839 GAGTTGAATT Statistics Matches: 123, Mismatches: 11, Indels: 7 0.87 0.08 0.05 Matches are distributed among these distances: 72 28 0.23 73 1 0.01 74 34 0.28 76 20 0.16 77 40 0.33 ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30 Consensus pattern (74 bp): GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG TGAACCGAG Found at i:7837852 original size:38 final size:38 Alignment explanation
Indices: 7837801--7837875 Score: 150 Period size: 38 Copynumber: 2.0 Consensus size: 38 7837791 CTCGCAATAT 7837801 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA 1 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA 7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA 1 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA 7837876 GCGTGTCTTG Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 38 37 1.00 ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29 Consensus pattern (38 bp): GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA Found at i:7837930 original size:110 final size:108 Alignment explanation
Indices: 7837737--7837945 Score: 364 Period size: 110 Copynumber: 1.9 Consensus size: 108 7837727 AAGTTGATTT * 7837737 TTTTGAAAACCGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG * 7837802 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA 66 AGTTGAATTTTAAAAACAG--ATTGAAATTACCTCAAGAGTTGAA * * 7837847 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 1 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 7837912 AGTTGAATTTTAAAAACAGATTGAAATTACCTCA 66 AGTTGAATTTTAAAAACAGATTGAAATTACCTCA 7837946 GCGTGTCCCG Statistics Matches: 95, Mismatches: 4, Indels: 2 0.94 0.04 0.02 Matches are distributed among these distances: 108 15 0.16 110 80 0.84 ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31 Consensus pattern (108 bp): TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG AGTTGAATTTTAAAAACAGATTGAAATTACCTCAAGAGTTGAA Found at i:7837977 original size:180 final size:185 Alignment explanation
Indices: 7837660--7838017 Score: 503 Period size: 180 Copynumber: 2.0 Consensus size: 185 7837650 GAGTTGATTT 7837660 TTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAAT 1 TTTTGAAAGACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAAT * * ** ** 7837725 ATAAGTTGATTTTTTTGAAAACCGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT 65 ATAAGTTGA-TATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACC 7837790 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA 129 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA * * * ** 7837847 TTTTGAAA-ACAGAAATTGAAATTACCTCAGC-GTG-TCTTGAGGCTCAACTCATTTCTCGCAAT 1 TTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAAC-CGAGGCTCAACTCACCTCTCGCAAT * * * * 7837909 ATGAGTTGA-ATTTT-AAAAAC-AGATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCT 65 ATAAGTTGATATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCT * 7837971 CTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA 130 CTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA 7838018 GCGTGTCCCA Statistics Matches: 154, Mismatches: 16, Indels: 9 0.86 0.09 0.05 Matches are distributed among these distances: 180 81 0.53 181 5 0.03 182 4 0.03 183 1 0.01 184 33 0.21 186 22 0.14 187 8 0.05 ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30 Consensus pattern (185 bp): TTTTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATA TAAGTTGATATTTTGAAAAACGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTC TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAGAGTTGAA Found at i:7838037 original size:72 final size:72 Alignment explanation
Indices: 7837839--7838616 Score: 559 Period size: 72 Copynumber: 10.2 Consensus size: 72 7837829 ATTACCTCAA * ** ** 7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC 1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC 7837904 GCAATAT 66 GCAATAT * * 7837911 GAGTTGAATTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC 1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC 7837974 GCAATAT 66 GCAATAT * 7837981 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTC 1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC 7838046 GCAATAT 66 GCAATAT * * * * * * 7838053 GAGTTGA-TTTTGAAAA-ATATAATTGAAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAA 1 GAGTTGATTTTTGAAAACAGA-AATTG-------AAATTACCTCAGCGTGT--CCCGAGGCTCAA 7838116 CTCACCTCTCGCAATAT 56 CTCACCTCTCGCAATAT * * ** * * 7838133 GAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTA 1 GAGTTGA---TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCA 7838198 CCTCTCGCAATAT 60 CCTCTCGCAATAT * * * * * ** 7838211 AAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTC 1 -GAGTT-G-----ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC ** 7838276 ATTTCTCGCAATAT 59 ACCTCTCGCAATAT 7838290 GAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCAT- 1 GAGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACC-TC 7838354 TCGCAATAT 64 TCGCAATAT * ** ** * 7838363 GAGCTGATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGC--GTCTTGAGGT 1 GAGTTGA--TTTTTGAAA-ACAGAAATT---G--------AAATTACCTCAGCGTGTCCCGAGGC * 7838426 TCAACTCATCTCTCGCAATA- 52 TCAACTCACCTCTCGCAATAT * * * * * ** 7838446 GAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCAACATGTCTTTGAGGCTCAACTCACC 1 GAGTTGA--TTTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTC-CCGAGGCTCAACTCACC * * * 7838511 GCTTGCAATAC 62 TCTCGCAATAT * * * 7838522 GA-TTGATTTTTTTTTTTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCAAC 1 GAGTTGA--------TTTTTGAAAACAGAAATTGAAATT-ACCTCAGCGTGTCCCGAGGCTCAAC * 7838586 TCACCTCTC-AAATAT 57 TCACCTCTCGCAATAT * 7838601 GAGTTGAATTTTGAAA 1 GAGTTGATTTTTGAAA 7838617 TAAAACATCA Statistics Matches: 580, Mismatches: 70, Indels: 112 0.76 0.09 0.15 Matches are distributed among these distances: 70 66 0.11 71 14 0.02 72 93 0.16 73 61 0.11 74 13 0.02 75 35 0.06 76 2 0.00 77 1 0.00 78 58 0.10 79 37 0.06 80 74 0.13 81 38 0.07 82 9 0.02 83 25 0.04 84 35 0.06 85 6 0.01 86 13 0.02 ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31 Consensus pattern (72 bp): GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC GCAATAT Found at i:7838134 original size:152 final size:148 Alignment explanation
Indices: 7837839--7838374 Score: 502 Period size: 142 Copynumber: 3.6 Consensus size: 148 7837829 ATTACCTCAA * ** ** 7837839 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC 1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC * * * * * *** * 7837904 GCAATATGAGTTGA-ATTT-T-A---AAAACAG-ATTGAAATTACCTCAGCGTGTCCCGAGGCTC 66 GCAATATGAGTTGATTTTTATAATTGAAAACAGAAAT-AAAATACATCAACGTGTATTGAAGCTC 7837962 AACTCACCTCTCGCAATAT 130 AACTCACCTCTCGCAATAT * 7837981 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTC 1 GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC * ** 7838046 GCAATATGAGTTGATTTTGAAAAATATAATTG-AAA-A-AAA-AAAATACCTCAGTGTGTGATCT 66 GCAATATGAGTTGATTTT------TATAATTGAAAACAGAAATAAAATACATCAACGTGT-AT-T 7838107 GAAGCTCAACTCACCTCTCGCAATAT 123 GAAGCTCAACTCACCTCTCGCAATAT * * ** * * 7838133 GAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTA 1 GAGTTGA---TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCA * * * ** * 7838198 CCTCTCGCAATATAAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCT 60 CCTCTCGCAATAT-GAGTTGATTTTTATAATTGAAAACAGAAA-T-AAAATACATCAACGTGTAT * ** 7838263 TGAGGCTCAACTCATTTCTCGCAATAT 122 TGAAGCTCAACTCACCTCTCGCAATAT 7838290 GAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCAT- 1 GAGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACC-TC * 7838354 TCGCAATATGAGCTGATTTTT 64 TCGCAATATGAGTTGATTTTT 7838375 TTGAAACACA Statistics Matches: 322, Mismatches: 42, Indels: 51 0.78 0.10 0.12 Matches are distributed among these distances: 142 73 0.23 143 2 0.01 149 1 0.00 150 16 0.05 151 10 0.03 152 61 0.19 153 9 0.03 154 24 0.07 155 19 0.06 156 24 0.07 157 30 0.09 158 30 0.09 159 23 0.07 ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31 Consensus pattern (148 bp): GAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC GCAATATGAGTTGATTTTTATAATTGAAAACAGAAATAAAATACATCAACGTGTATTGAAGCTCA ACTCACCTCTCGCAATAT Found at i:7838296 original size:157 final size:154 Alignment explanation
Indices: 7837847--7838612 Score: 491 Period size: 157 Copynumber: 5.0 Consensus size: 154 7837837 AAGAGTTGAA * * ** 7837847 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTG-TCTTGAGGCTCAACTCATTTCTCGCAAT 1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAAC-TGAGGCTCAACTCACCTCTCGCAAT ** * * * * ** 7837909 ATGAGTT-G-----AATTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT 65 ATGAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACT 7837966 CACCTCTCGCAATATGAGTTGA--T 130 CACCTCTCGCAATATGAGTTGATTT * ** ** 7837989 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCCAAGGCTCAACTCACCTCTCGCAATA 1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATA * * ** * ** * * 7838052 TGAGTTGATTTTGAAAAATATAATTG-AAA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAG 66 TGAGTTGGTTTT------TTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGT-CT-TGAGG 7838111 CTCAACTCACCTCTCGCAATATGAGTTGATTTT 123 CTCAACTCACCTCTCGCAATATGAGTTGA-TTT * * 7838144 TTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTTACCTCTCGCAAT 1 TTTTGAAA-ACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAAT * 7838209 ATAAAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAAC 65 AT-GAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAAC ** * 7838274 TCATTTCTCGCAATATGAGTTGA-AT 129 TCACCTCTCGCAATATGAGTTGATTT * ** * 7838299 TTTTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCAT-TCGCAAT 1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACC-TCTCGCAAT * * * * * * * 7838361 ATGAGCT-G---ATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGCGTCTTG 65 ATGAGTTGGTTTTTTTTTTTGAAA-ACAGAAATT---G---AAAATACATCA--AC-GTGTCTTG * * * 7838422 AGGTTCAACTCATCTCTCGCAATA-GAGCTGATTT 120 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT * * *** * * 7838456 TTTTGAAAAACAGAAATTGAAAATAACTCAACATGT-CTTTGAGGCTCAACTCACCGCTTGCAAT 1 TTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAAT * * * * * * * * 7838520 ACGA-TTGATTTTTTTTTTTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCA 65 ATGAGTTG--GTTTTTTTTTTTGAAAACAGAAATTGAAAAT-ACATCAACGTGTCTTGAGGCTCA * * 7838584 ACTCACCTCTC-AAATATGAGTTGAATT 127 ACTCACCTCTCGCAATATGAGTTGATTT 7838611 TT 1 TT 7838613 GAAATAAAAC Statistics Matches: 490, Mismatches: 80, Indels: 95 0.74 0.12 0.14 Matches are distributed among these distances: 142 62 0.13 143 1 0.00 147 11 0.02 148 9 0.02 150 16 0.03 151 4 0.01 152 60 0.12 153 10 0.02 154 39 0.08 155 52 0.11 156 32 0.07 157 69 0.14 158 56 0.11 159 47 0.10 160 3 0.01 163 9 0.02 164 10 0.02 ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31 Consensus pattern (154 bp): TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATA TGAGTTGGTTTTTTTTTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTC ACCTCTCGCAATATGAGTTGATTT Found at i:7838327 original size:310 final size:306 Alignment explanation
Indices: 7837919--7838616 Score: 853 Period size: 310 Copynumber: 2.3 Consensus size: 306 7837909 ATGAGTTGAA * * 7837919 TTTTAAAAACAG--ATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG 1 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG 7837982 AGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACC-TCT 66 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCAT-T * * * * 7838045 CGCAATATGAGTTGA-TTTTGAAA-A-ATATAATT-GAA-AAAAAAAAATACCTCAGTGTGTGAT 130 CGCAATATGAGCTGATTTTTGAAACACAGA-AATTAGAACAAAAAAAAACACCTCA--GCGT-AT * * * * 7838105 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATAC 191 -TGAAGCTCAACTCACCTCTCGCAATA-GAGCTGA-TTTTTTTGAAAAACAGAAATTGAAAATAA * * * 7838170 CTCAGCATGTGAACTGAGGCTCAACTTACCTCTCGCAATATAAAGTTG-GTTTTTTT 253 CTCAACATGT-AACTGAGGCTCAACTCACCGCTCGCAATA-AAA-TTGAGTTTTTTT * * * * ** 7838226 TTTTGAAAACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG 1 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG * 7838291 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCATTC 66 AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCATTC * 7838356 GCAATATGAGCTGATTTTTTTGAAACACAGAAATTAAAGAACAAAAAAAAACACCTCAGCGTCTT 131 GCAATATGAGCTGA--TTTTTGAAACACAGAAATT--AGAACAAAAAAAAACACCTCAGCGTATT * * * 7838421 GAGGTTCAACTCATCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCA 192 GAAGCTCAACTCACCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCA *** * ** * 7838486 ACATGTCTTTGAGGCTCAACTCACCGCTTGCAATACGATTGATTTTTTTTT 257 ACATGTAACTGAGGCTCAACTCACCGCTCGCAATAAAATTGA-GTTTTTTT * * * 7838537 TTTTGACAACAGAAATTGAAATTAACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTC-AAATAT 1 TTTTGAAAACAGAAATTGAAATT-ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT 7838601 GAGTTGAA-TTTTGAAA 65 GAGTTGAATTTTTGAAA 7838617 TAAAACATCA Statistics Matches: 335, Mismatches: 40, Indels: 29 0.83 0.10 0.07 Matches are distributed among these distances: 307 11 0.03 309 52 0.16 310 78 0.23 311 65 0.19 312 63 0.19 313 14 0.04 314 28 0.08 315 3 0.01 316 3 0.01 317 3 0.01 318 15 0.04 ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31 Consensus pattern (306 bp): TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG AGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCATTC GCAATATGAGCTGATTTTTGAAACACAGAAATTAGAACAAAAAAAAACACCTCAGCGTATTGAAG CTCAACTCACCTCTCGCAATAGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATAACTCAACAT GTAACTGAGGCTCAACTCACCGCTCGCAATAAAATTGAGTTTTTTT Found at i:7850133 original size:13 final size:14 Alignment explanation
Indices: 7850115--7850145 Score: 55 Period size: 13 Copynumber: 2.3 Consensus size: 14 7850105 ATGTACGAAT 7850115 ATATACATATA-TA 1 ATATACATATATTA 7850128 ATATACATATATTA 1 ATATACATATATTA 7850142 ATAT 1 ATAT 7850146 TAATAATGAT Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 13 11 0.65 14 6 0.35 ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42 Consensus pattern (14 bp): ATATACATATATTA Found at i:7852310 original size:67 final size:68 Alignment explanation
Indices: 7851990--7852298 Score: 530 Period size: 68 Copynumber: 4.5 Consensus size: 68 7851980 TTAAAAACAG 7851990 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA 1 AAATT-AAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA * 7852055 ATGA 65 ACGA * 7852059 AAGTTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA 1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA 7852124 CGA 66 CGA 7852127 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA 1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA 7852192 CGA 66 CGA * * * * 7852195 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAAGTAGATTTTGAAAAA 1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA 7852259 CGA 66 CGA * * 7852262 AAATTAAAGGCTCAACTCAACTCTCGCAATATGAGTT 1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTT 7852299 GATCTTTGAA Statistics Matches: 232, Mismatches: 8, Indels: 2 0.96 0.03 0.01 Matches are distributed among these distances: 67 61 0.26 68 167 0.72 69 4 0.02 ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27 Consensus pattern (68 bp): AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA CGA Found at i:7852499 original size:74 final size:71 Alignment explanation
Indices: 7852348--7852597 Score: 270 Period size: 71 Copynumber: 3.5 Consensus size: 71 7852338 ATTAAAAAGA * * * * * 7852348 CTCAACTCACCTT-TCGCAATATGAATTAACTTTT-GAAAATATAATTTGAAAATACCTTAGCGT 1 CTCAACTCA-CTTCTCGCAATATGAGTTGA-TTTTAGAAAA-ATAAATTGAAATTACCTCAGCGT * * 7852411 GCCGCAAGG 63 GCCCCGAGG ** 7852420 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT 1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGA-AAAATA--AATTGAAATTACCTCAGCGT 7852485 GCCCCGAGG 63 GCCCCGAGG * * * * * 7852494 TTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAACGTGTC 1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTGCC ** 7852559 TTGAGG 66 CCGAGG * * 7852565 CTCAACTCACCTCTCGCAATATGAGCTGATTTT 1 CTCAACTCACTTCTCGCAATATGAGTTGATTTT 7852598 CTTGAAAACA Statistics Matches: 151, Mismatches: 22, Indels: 11 0.82 0.12 0.06 Matches are distributed among these distances: 71 61 0.40 72 28 0.19 73 5 0.03 74 57 0.38 ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32 Consensus pattern (71 bp): CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTGCC CCGAGG Done.