Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 316 of 444
Found at i:91239762 original size:37 final size:37
Alignment explanation
Indices: 91239712--91239868 Score: 287
Period size: 37 Copynumber: 4.2 Consensus size: 37
91239702 TTATTACGAA
*
91239712 GTCTTACCTGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
91239749 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
91239786 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
91239823 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
91239860 GTCTCACCC
1 GTCTTACCC
91239869 AGAATATATT
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 116 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:91239987 original size:48 final size:48
Alignment explanation
Indices: 91239916--91240530 Score: 951
Period size: 48 Copynumber: 12.8 Consensus size: 48
91239906 TGTTACAACA
* * * * *
91239916 TTCACATTAGCCATTTGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
91239964 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
91240012 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
91240060 TTCACATTAGCCATTCGGCATTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
91240108 TCCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
91240156 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
91240204 CTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91240252 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
91240300 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
91240348 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
91240396 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATA--TCACACATATAT
*
91240446 TTCACATTAGCCATTCGGCTTTACCATATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
91240494 TTCACATTAGCCATTCAGCTTTACCACATATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
91240531 TTATCTTGTA
Statistics
Matches: 518, Mismatches: 47, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
48 474 0.92
50 44 0.08
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:91254388 original size:16 final size:17
Alignment explanation
Indices: 91254360--91254403 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
91254350 AAAATATTTT
91254360 TAAAATGAAAATAATTCA
1 TAAAAT-AAAATAATTCA
*
91254378 T-AAATAAAATAATTTA
1 TAAAATAAAATAATTCA
91254394 TAAAATAAAA
1 TAAAATAAAA
91254404 CACAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 11 0.46
17 12 0.50
18 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
TAAAATAAAATAATTCA
Found at i:91257106 original size:40 final size:42
Alignment explanation
Indices: 91257040--91257136 Score: 130
Period size: 40 Copynumber: 2.4 Consensus size: 42
91257030 CGACTAAGTT
**
91257040 TGGCACTAAGTGTGC-AGTTCAAAATAGCTTCGGTTACA-AA
1 TGGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACATAA
* *
91257080 TGGCACTAAGTGTGCGAGTT-AGAATAGCTTCGACTATATAA
1 TGGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACATAA
91257121 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
91257137 TACCGAGATA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 45 0.88
41 6 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (42 bp):
TGGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACATAA
Found at i:91258252 original size:25 final size:27
Alignment explanation
Indices: 91258215--91258267 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
91258205 TCAAACATGC
91258215 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
91258241 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
91258267 A
1 A
91258268 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:91259783 original size:31 final size:32
Alignment explanation
Indices: 91259747--91259810 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
91259737 AATGCTTACC
91259747 ATGCCCATCAT-CATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91259778 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
91259810 A
1 A
91259811 AATGCATACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 11 0.34
32 21 0.66
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:91266239 original size:25 final size:27
Alignment explanation
Indices: 91266202--91266254 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
91266192 TCAAACATGC
91266202 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
91266228 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
91266254 A
1 A
91266255 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:91267771 original size:32 final size:32
Alignment explanation
Indices: 91267734--91267794 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
91267724 AATGCTTACC
* *
91267734 ATGCCCATCATTCATGAACTATTTAAATGCTA
1 ATGCCCATCATCCATGAACTATTAAAATGCTA
* *
91267766 ATGCCCATTATCCATTAACTATTAAAATG
1 ATGCCCATCATCCATGAACTATTAAAATG
91267795 GTAAAATGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (32 bp):
ATGCCCATCATCCATGAACTATTAAAATGCTA
Found at i:91269532 original size:2 final size:2
Alignment explanation
Indices: 91269525--91269563 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
91269515 AATCCCTATC
91269525 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
91269564 TTTACAAGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91269806 original size:19 final size:17
Alignment explanation
Indices: 91269782--91269820 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
91269772 TACTATGCAC
91269782 AAATTTTATAAAATTGAAA
1 AAATTTTA-AAAATT-AAA
*
91269801 AAATTTTAACAATTAAA
1 AAATTTTAAAAATTAAA
91269818 AAA
1 AAA
91269821 ACAACATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
AAATTTTAAAAATTAAA
Found at i:91269819 original size:18 final size:19
Alignment explanation
Indices: 91269782--91269821 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
91269772 TACTATGCAC
*
91269782 AAATTTTATAAAATTGAAA
1 AAATTTTATAAAATTAAAA
*
91269801 AAATTTTA-ACAATTAAAA
1 AAATTTTATAAAATTAAAA
91269819 AAA
1 AAA
91269822 CAACATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATTTTATAAAATTAAAA
Found at i:91277095 original size:41 final size:41
Alignment explanation
Indices: 91277050--91277167 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91277040 TGAAAGATAA
91277050 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91277091 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91277121 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91277162 ATGTAG
1 ATGTAG
91277168 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91277106 original size:71 final size:71
Alignment explanation
Indices: 91277018--91277181 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91277008 GAGATGTATC
91277018 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91277083 AGGACA
66 AGGACA
91277089 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91277154 AGGACA
66 AGGACA
91277160 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91277182 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91284670 original size:70 final size:71
Alignment explanation
Indices: 91284572--91284734 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
91284562 GAGATGTATC
91284572 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91284637 AGGACA
66 AGGACA
91284643 CCATGTAGACAAGA-AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91284707 AGGACA
66 AGGACA
91284713 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91284735 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91287954 original size:41 final size:40
Alignment explanation
Indices: 91287855--91288022 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
91287845 AAATTGAATG
* * * **
91287855 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
91287894 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT-GATT
* * *
91287935 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGATT
* *
91287975 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
91288015 ATATCCGG
1 ATATCCGG
91288023 TTATATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 14 0.13
40 60 0.56
41 33 0.31
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:91290298 original size:56 final size:53
Alignment explanation
Indices: 91290205--91290313 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
91290195 GAAAAAAAAA
91290205 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
91290258 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
91290314 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:91291573 original size:40 final size:40
Alignment explanation
Indices: 91291507--91291673 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
91291497 AAATTGAATG
* * *
91291507 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
91291546 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
91291586 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * * ** *
91291626 CTATCCGGGCTAAGACCCGAAGGCATTTGTACACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
91291666 ATATCCGG
1 ATATCCGG
91291674 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:91304163 original size:5 final size:5
Alignment explanation
Indices: 91304153--91304183 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
91304143 ATACAATCCC
91304153 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
91304184 TTCAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:91305793 original size:14 final size:15
Alignment explanation
Indices: 91305764--91305813 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
91305754 AAAAATAGAC
*
91305764 ATTTTCATTAAATTA
1 ATTTTAATTAAATTA
91305779 ATTTTAATT-AATTA
1 ATTTTAATTAAATTA
91305793 ATTTTCTAATTAAATT-
1 A-TTT-TAATTAAATTA
91305809 ATTTT
1 ATTTT
91305814 TTCAACCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 6 0.19
17 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTAATTAAATTA
Found at i:91307895 original size:27 final size:26
Alignment explanation
Indices: 91307832--91307971 Score: 133
Period size: 27 Copynumber: 5.2 Consensus size: 26
91307822 AGCATGGCTG
* * *
91307832 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAATAGATAATGTGGCAGAGCCA
*
91307858 -CAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ATAGATAAT-GTGGCAGAGCCA
91307885 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAATAGATA-ATGTGGCAGAGCCA
*
91307912 CCAG-ATCAGATATTTGTGGCAGAGCCA
1 CCAGAAT-AGATA-ATGTGGCAGAGCCA
* *
91307939 CCAG-ATCAGATATTTGTGGCATAGCCA
1 CCAGAAT-AGATA-ATGTGGCAGAGCCA
91307966 CCAGAA
1 CCAGAA
91307972 CGCTTCCTCC
Statistics
Matches: 103, Mismatches: 5, Indels: 10
0.87 0.04 0.08
Matches are distributed among these distances:
25 4 0.04
26 11 0.11
27 81 0.79
28 7 0.07
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAATAGATAATGTGGCAGAGCCA
Found at i:91307922 original size:54 final size:55
Alignment explanation
Indices: 91307832--91307970 Score: 178
Period size: 54 Copynumber: 2.6 Consensus size: 55
91307822 AGCATGGCTG
* * *
91307832 CCAGAACAGATA-ATGTGACAGAGTCA-CAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAATAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
91307885 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAATAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
91307939 CCAG-ATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAAT-AGATATATGTGGCAGAGCCACCAGA
91307971 ACGCTTCCTC
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
53 13 0.17
54 58 0.76
55 5 0.07
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (55 bp):
CCAGAATAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:91309619 original size:26 final size:26
Alignment explanation
Indices: 91309583--91309717 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
91309573 CATGAAATTC
91309583 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91309609 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91309635 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91309661 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91309686 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91309712 TTATCA
1 TTATCA
91309718 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91309694 original size:51 final size:52
Alignment explanation
Indices: 91309583--91309717 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
91309573 CATGAAATTC
* *
91309583 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
91309635 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
91309686 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
91309718 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 49 0.60
52 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:91311900 original size:22 final size:22
Alignment explanation
Indices: 91311872--91311915 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
91311862 TTATCCAAAG
91311872 GACTTAGTACAGATACCCCACT
1 GACTTAGTACAGATACCCCACT
91311894 GACTTAGTACAGATACCCCACT
1 GACTTAGTACAGATACCCCACT
91311916 CACAATCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.23
Consensus pattern (22 bp):
GACTTAGTACAGATACCCCACT
Found at i:91313532 original size:19 final size:22
Alignment explanation
Indices: 91313493--91313532 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
91313483 AGAAACCCAA
91313493 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
91313515 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
91313533 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:91313631 original size:27 final size:28
Alignment explanation
Indices: 91313594--91313733 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
91313584 AGCATGGCTG
* *
91313594 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
91313620 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
91313648 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
91313675 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
91313702 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
91313729 CCAGA
1 CCAGA
91313734 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:91315372 original size:26 final size:26
Alignment explanation
Indices: 91315336--91315471 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
91315326 ACATGAATTC
91315336 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91315362 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91315388 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91315414 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91315440 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91315466 TTATCA
1 TTATCA
91315472 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91327687 original size:26 final size:26
Alignment explanation
Indices: 91327658--91327742 Score: 161
Period size: 26 Copynumber: 3.3 Consensus size: 26
91327648 TTGATACAAA
91327658 ATGATAATGGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
*
91327684 ATGATAATAGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
91327710 ATGATAATGGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
91327736 ATGATAA
1 ATGATAA
91327743 GAATATCATG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
ATGATAATGGGTTAGGTAAATGTTTC
Found at i:91329770 original size:136 final size:136
Alignment explanation
Indices: 91329526--91329810 Score: 534
Period size: 136 Copynumber: 2.1 Consensus size: 136
91329516 GAGTAGTCTC
**
91329526 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTCCAAATGGGCCTATGGGCCATACT
91329591 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
91329656 CTGTTA
131 CTGTTA
91329662 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTCCAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTCCAAATGGGCCTATGGGCCATACT
91329727 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
91329792 CTGTTA
131 CTGTTA
**
91329798 CCTGAATGGGCTT
1 CCCAAATGGGCTT
91329811 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 145 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTCCAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:91331642 original size:21 final size:20
Alignment explanation
Indices: 91331616--91331655 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91331606 ACTTGTTTAA
91331616 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
91331637 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
91331656 CCCATACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:91336411 original size:23 final size:25
Alignment explanation
Indices: 91336361--91336408 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
91336351 TTATGTGAAA
*
91336361 TGATATATGGATGTGTAATGATTAT
1 TGATATATGGATGTGTAATGAGTAT
91336386 TGATATAT-G-TGTGT-ATGAGTAT
1 TGATATATGGATGTGTAATGAGTAT
91336408 T
1 T
91336409 TGAATGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 1 0.05
25 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (25 bp):
TGATATATGGATGTGTAATGAGTAT
Found at i:91336596 original size:40 final size:40
Alignment explanation
Indices: 91336541--91336744 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
91336531 TGAATGATAC
* * * *
91336541 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
91336581 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* **
91336621 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * **
91336661 CTGGGCTAAGACCCGAAGACATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
91336701 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
91336741 CCGG
1 CCGG
91336745 TTGTATTCCG
Statistics
Matches: 137, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:91344621 original size:23 final size:25
Alignment explanation
Indices: 91344571--91344618 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
91344561 TTATGTGAAA
*
91344571 TGATATATGGATGTGTAATGATTAT
1 TGATATATGGATGTGTAATGAGTAT
91344596 TGATATAT-G-TGTGT-ATGAGTAT
1 TGATATATGGATGTGTAATGAGTAT
91344618 T
1 T
91344619 TGAATGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 1 0.05
25 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (25 bp):
TGATATATGGATGTGTAATGAGTAT
Found at i:91344805 original size:40 final size:40
Alignment explanation
Indices: 91344750--91344953 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 40
91344740 TGAATGATAC
* * * *
91344750 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
91344790 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* **
91344830 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* **
91344870 CCGGGCTAAGACCCGAAGACATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
91344910 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
91344950 CCGG
1 CCGG
91344954 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:91352822 original size:23 final size:25
Alignment explanation
Indices: 91352772--91352819 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
91352762 TTATGTGAAA
*
91352772 TGATATATGGATGTGTAATGATTAT
1 TGATATATGGATGTGTAATGAGTAT
91352797 TGATATAT-G-TGTGT-ATGAGTAT
1 TGATATATGGATGTGTAATGAGTAT
91352819 T
1 T
91352820 TGAATGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 1 0.05
25 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (25 bp):
TGATATATGGATGTGTAATGAGTAT
Found at i:91353009 original size:40 final size:40
Alignment explanation
Indices: 91352952--91353155 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
91352942 TGAATGATAC
* * * * *
91352952 CCGGGCTAAGTCTCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
91352992 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* **
91353032 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* **
91353072 CCGGGCTAAGACCCGAAGACATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
91353112 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
91353152 CCGG
1 CCGG
91353156 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:91362663 original size:93 final size:93
Alignment explanation
Indices: 91362551--91362722 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91362541 CGCCCATAAG
* *
91362551 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91362616 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91362644 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91362709 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91362723 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91362719 original size:46 final size:46
Alignment explanation
Indices: 91362544--91362719 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91362534 TGTAACCCGC
* * *
91362544 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91362590 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91362640 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91362683 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91362720 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91370377 original size:38 final size:38
Alignment explanation
Indices: 91370320--91370427 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
91370310 TCAATCATGC
*
91370320 ACTGGGCCGTAGCCCTTTTCATATTTCATATTCCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTCCATAAT
* * *
91370359 ATTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTCCATAAT
91370397 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
91370428 ACTGGGCCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 53 0.84
39 10 0.16
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTCCATAAT
Found at i:91370416 original size:31 final size:31
Alignment explanation
Indices: 91370381--91370444 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
91370371 CCTTTTCATG
91370381 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
91370412 TTTCATATTTCATATTACTGGGCCGCAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
91370443 TT
1 TT
91370445 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:91370714 original size:23 final size:23
Alignment explanation
Indices: 91370634--91370753 Score: 138
Period size: 24 Copynumber: 5.0 Consensus size: 23
91370624 TGCTTTATCA
*
91370634 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
91370658 TAATAACTGGGGCCA-AAG-CCTTT
1 T-ATAACTGGGG-CATAAGCCCTTT
91370681 TCAATAACTGGGGCATAAGCCCTTT
1 T--ATAACTGGGGCATAAGCCCTTT
91370706 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
91370729 CGATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
91370753 T
1 T
91370754 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 3, Indels: 15
0.83 0.03 0.14
Matches are distributed among these distances:
23 29 0.34
24 40 0.47
25 17 0.20
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:91370714 original size:47 final size:48
Alignment explanation
Indices: 91370626--91370753 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 48
91370616 AGCATAGCTG
*
91370626 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGC
1 CTTT-TCA-ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGC
91370677 CTTTTCAATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGC
1 CTTTTCAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
* *
91370724 CCTTTCGATAACTGGGGCATAAGCCCTTTT
1 CTTTTCAATAACTGGGGCATAAGCCCTTTT
91370754 TCACTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
46 2 0.03
47 42 0.58
48 9 0.12
49 12 0.17
50 3 0.04
51 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
CTTTTCAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
Found at i:91370828 original size:20 final size:20
Alignment explanation
Indices: 91370803--91370862 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
91370793 TATGATTACC
91370803 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
91370823 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
91370843 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
91370863 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:91370833 original size:11 final size:11
Alignment explanation
Indices: 91370803--91370857 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
91370793 TATGATTACC
91370803 TCATGTGCATA
1 TCATGTGCATA
*
91370814 TCA--TACATA
1 TCATGTGCATA
91370823 TCATGTGCATA
1 TCATGTGCATA
* *
91370834 TCA--TACATT
1 TCATGTGCATA
91370843 TCATGTGCATA
1 TCATGTGCATA
91370854 TCAT
1 TCAT
91370858 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:91378445 original size:37 final size:37
Alignment explanation
Indices: 91378387--91378493 Score: 178
Period size: 38 Copynumber: 2.8 Consensus size: 37
91378377 TCAATCATGC
*
91378387 ACTGGGCCGTAGCCCTTTTCATATTTCATATTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTCATAAT
*
91378425 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATA-TTCATAAT
91378463 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
91378494 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
37 18 0.28
38 47 0.72
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (37 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTCATAAT
Found at i:91378453 original size:31 final size:32
Alignment explanation
Indices: 91378410--91378510 Score: 118
Period size: 38 Copynumber: 3.1 Consensus size: 32
91378400 CCTTTTCATA
91378410 TTTCATA--TTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTTCATAATACTGGGCCGAAGCCT
91378440 TTTCATGTTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCA----T-AT-TTTCATAATACTGGGCCGAAGCCT
*
91378478 TTTCATA-TTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTTCATAATACTGGGCCGAAGCCT
91378509 TT
1 TT
91378511 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 15
0.79 0.01 0.19
Matches are distributed among these distances:
30 5 0.08
31 25 0.40
33 1 0.02
34 2 0.03
35 1 0.02
38 28 0.45
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (32 bp):
TTTCATATTTTCATAATACTGGGCCGAAGCCT
Found at i:91378748 original size:24 final size:24
Alignment explanation
Indices: 91378702--91378820 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
91378692 GCTTTATCAT
*
91378702 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
91378727 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
91378751 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
91378774 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
91378798 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91378821 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:91378781 original size:47 final size:48
Alignment explanation
Indices: 91378702--91378820 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
91378692 GCTTTATCAT
*
91378702 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
91378751 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
91378798 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91378821 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:91378896 original size:20 final size:20
Alignment explanation
Indices: 91378871--91378950 Score: 142
Period size: 20 Copynumber: 4.0 Consensus size: 20
91378861 TATGATTACC
91378871 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
91378891 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
*
91378911 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
91378931 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
91378951 CCATATTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:91378901 original size:11 final size:11
Alignment explanation
Indices: 91378871--91378945 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
91378861 TATGATTACC
91378871 TCATGTGCATA
1 TCATGTGCATA
*
91378882 TCA--TACATA
1 TCATGTGCATA
91378891 TCATGTGCATA
1 TCATGTGCATA
* *
91378902 TCA--TACATT
1 TCATGTGCATA
91378911 TCATGTGCATA
1 TCATGTGCATA
* *
91378922 TCA--TACATT
1 TCATGTGCATA
91378931 TCATGTGCATA
1 TCATGTGCATA
91378942 TCAT
1 TCAT
91378946 ACATACCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:91379025 original size:25 final size:25
Alignment explanation
Indices: 91378993--91379040 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91378983 ATACATAAAC
* * *
91378993 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91379018 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91379041 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91387775 original size:15 final size:17
Alignment explanation
Indices: 91387755--91387786 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
91387745 TTAACATATT
91387755 TACCAAA-TCA-ATTCA
1 TACCAAACTCATATTCA
91387770 TACCAAACTCATATTCA
1 TACCAAACTCATATTCA
91387787 CAAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (17 bp):
TACCAAACTCATATTCA
Found at i:91389149 original size:22 final size:23
Alignment explanation
Indices: 91389124--91389166 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
91389114 ATGCCATATC
*
91389124 ATAAACA-ACCAAATTCATGCTT
1 ATAAACATACCAAAATCATGCTT
*
91389146 ATAACCATACCAAAATCATGC
1 ATAAACATACCAAAATCATGC
91389167 CAAATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAACATACCAAAATCATGCTT
Found at i:91389993 original size:43 final size:43
Alignment explanation
Indices: 91389946--91390083 Score: 142
Period size: 43 Copynumber: 3.2 Consensus size: 43
91389936 TCCCAGGCGT
91389946 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
* * * *
91389989 GGTCTTACACGAAATCAAATAT-GATGTCGA-TGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATG-CCACTGTCCCAGACAG
* *
91390031 GGTCTTACATGTAAATCATAA-GTCAATGCCAAC-GTCCCAGAC-G
1 GGTCTTACATGT-AATCA-AATATCGATGCC-ACTGTCCCAGACAG
91390074 TGGTCTTACA
1 -GGTCTTACA
91390084 CGAAAACACA
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
42 25 0.32
43 29 0.37
44 24 0.31
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
Found at i:91412596 original size:41 final size:41
Alignment explanation
Indices: 91412535--91412636 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 41
91412525 GGTTAACTCT
* * * *
91412535 GGGCACGTATGAGGAGTTCAGGGGTATCGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
* *
91412576 GGGCACGTATGTGCAATTCAGGGGTACCGAATTACAAACAT
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
*
91412617 GGGCACGTATGTGTAATTCA
1 GGGCACGTATGTGCAATTCA
91412637 AGGTATAATT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (41 bp):
GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
Found at i:91415216 original size:54 final size:53
Alignment explanation
Indices: 91415151--91415267 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 53
91415141 TAGTTTACTA
* * *
91415151 AAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTAT
1 AAATTACCGAAATA-CCTTAGACTTGTAAAAATAC-CAAAGTACCCCCGATTTAT
* *
91415204 AAATTTACCGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTTAT
1 AAA-TTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCCCGATTTAT
91415258 AGAATTACCG
1 A-AATTACCG
91415268 TTTTACCCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
53 11 0.20
54 42 0.76
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCCCGATTTAT
Found at i:91415263 original size:27 final size:26
Alignment explanation
Indices: 91415151--91415573 Score: 108
Period size: 27 Copynumber: 15.7 Consensus size: 26
91415141 TAGTTTACTA
* *
91415151 AAATTACCGAAATACCCT-TAGTTTGT
1 AAATTACCGAAATACCCTCGA-TTTAT
* *
91415177 AAAAATACTGAAATACCCTCGATTTAT
1 -AAATTACCGAAATACCCTCGATTTAT
*
91415204 AAATTTACCGAAATACCTTCGACTTGTA-
1 AAA-TTACCGAAATACCCTCGA-TT-TAT
*
91415232 AAATTACC-AAAGTACCCCCGATTTAT
1 AAATTACCGAAA-TACCCTCGATTTAT
*** * *
91415258 AGAATTACCGTTTTACCC-CAAATTTAC
1 A-AATTACCGAAATACCCTC-GATTTAT
** *
91415285 ATAATTACC-ATTTTACCC-CTGATTTAC
1 A-AATTACCGA-AATACCCTC-GATTTAT
* *** * *
91415312 ATAATTATCGTTTTACCCTCGACTTAC
1 A-AATTACCGAAATACCCTCGATTTAT
*** *
91415339 AGAATTACCGTTTTACCCTTGATTTAT
1 A-AATTACCGAAATACCCTCGATTTAT
* *** *
91415366 AGAATTACTGTTTTACCCTTGATTTAT
1 A-AATTACCGAAATACCCTCGATTTAT
* *** *
91415393 AGAATTACTGTTTTACCCTCGATTTACA
1 A-AATTACCGAAATACCCTCGATTTA-T
** * * *
91415421 AAATTACTAAAATACCCTTGGTTTGT
1 AAATTACCGAAATACCCTCGATTTAT
* * *
91415447 AAAATTACCAAAATACCC-CTAGTTTGT
1 -AAATTACCGAAATACCCTCGA-TTTAT
* * *
91415474 AAAATTACCAAAATACCCT-TAGTTTGT
1 -AAATTACCGAAATACCCTCGA-TTTAT
** *
91415501 GAAATTACCGAAATACCCTTAATTTGT
1 -AAATTACCGAAATACCCTCGATTTAT
* *
91415528 AAAATTACCAAAATACCC-CTGATTTAC
1 -AAATTACCGAAATACCCTC-GATTTAT
*
91415555 AAAGTTACAGAAATACCCT
1 AAA-TTACCGAAATACCCT
91415574 TGACTTTCTA
Statistics
Matches: 324, Mismatches: 52, Indels: 39
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 13 0.04
27 298 0.92
28 9 0.03
29 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (26 bp):
AAATTACCGAAATACCCTCGATTTAT
Found at i:91415364 original size:81 final size:81
Alignment explanation
Indices: 91415244--91415427 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
91415234 ATTACCAAAG
* * *
91415244 TACCCCCGATTTATAGAATTACCGTTTTACCCCAAATTTACATAATTACCATTTTACCCCTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCAAATTTACAGAATTACCATTTTACCCCTGATT
*
91415309 TACATAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* *** * ** *
91415325 TACCCTCGACTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCAAATTTACAGAATTACCATTTTACCCCTGATT
*
91415390 TATAGAATTACTGTTT
66 TACAGAATTACTGTTT
*
91415406 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
91415428 TAAAATACCC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 86 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCAAATTTACAGAATTACCATTTTACCCCTGATT
TACAGAATTACTGTTT
Found at i:91415397 original size:54 final size:54
Alignment explanation
Indices: 91415251--91415428 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
91415241 AAGTACCCCC
* * * * * * *
91415251 GATTTATAGAATTACCGTTTTACCCCAAATTTACATAATTACCATTTTACCCCT
1 GATTTACAGAATTACTGTTTTACCCTAGATTTACAGAATTACCGTTTTACCCTT
* * *
91415305 GATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACT-GTTTTACCCTAGATTTACAGAATTACCGTTTTACCCTT
* * * * *
91415359 GATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTAGATTTACAGAATTACCGTTTTACCCTT
*
91415413 GATTTACAAAATTACT
1 GATTTACAGAATTACT
91415429 AAAATACCCT
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 102 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
GATTTACAGAATTACTGTTTTACCCTAGATTTACAGAATTACCGTTTTACCCTT
Found at i:91415437 original size:54 final size:54
Alignment explanation
Indices: 91415325--91415455 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
91415315 ATTATCGTTT
* * * * * * ****
91415325 TACCCTCGACTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
*
91415379 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
91415433 TACCCTTGGTTTGTAAAATTACC
1 TACCCTTGATTTATAGAATTACC
91415456 AAAATACCCC
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (54 bp):
TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:91415437 original size:81 final size:81
Alignment explanation
Indices: 91415295--91415454 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 81
91415285 ATAATTACCA
* * ****
91415295 TTTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTTG
1 TTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAATACCCTTG
*
91415360 ATTTATAGAATTACTG
66 ATTTATAAAATTACTG
* * * *
91415376 TTTTACCCTTGATTTATAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 TTTTACCCCTGATTTACAGAATTATC-GTTTTACCCTCGACTTACAAAATTACCAAAATACCCTT
* *
91415440 GGTTTGTAAAATTAC
65 GATTTATAAAATTAC
91415455 CAAAATACCC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (81 bp):
TTTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAAAATTACCAAAATACCCTTG
ATTTATAAAATTACTG
Found at i:91415464 original size:54 final size:54
Alignment explanation
Indices: 91415406--91415545 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
91415396 ATTACTGTTT
* ** * *
91415406 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * *
91415460 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
91415514 TACCCTTAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
91415546 CTGATTTACA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.99
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:91415568 original size:54 final size:53
Alignment explanation
Indices: 91415420--91415574 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 53
91415410 CTCGATTTAC
* * * * *
91415420 AAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GATT-TACAAATTA-CAGAAATACCCTTAATTTGT
* ** *
91415474 AAAATTACCAAAATA-CCCTTAGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCCTGA-TTT-ACAAATTACAGAAATACCCTTAATTTGT
91415528 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTT
1 AAAATTACCAAAATACCCCTGATTTACAAA-TTACAGAAATACCCTT
91415575 GACTTTCTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
52 1 0.01
53 9 0.11
54 68 0.82
55 5 0.06
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTACAAATTACAGAAATACCCTTAATTTGT
Found at i:91415569 original size:81 final size:81
Alignment explanation
Indices: 91415421--91415574 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
91415411 TCGATTTACA
* ** *
91415421 AAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
91415486 ATACCCTTAGTTTGTG
66 ATACCCTTAGTTTGTG
*
91415502 AAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
91415564 GAAATACCCTT
64 -AAATACCCTT
91415575 GACTTTCTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 55 0.85
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTAGTTTGTG
Found at i:91415599 original size:56 final size:55
Alignment explanation
Indices: 91415420--91415632 Score: 141
Period size: 54 Copynumber: 3.9 Consensus size: 55
91415410 CTCGATTTAC
* * ** * * *
91415420 AAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCA-AAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCAC-TGATTTACAAAATTA-CAGAAATACCCTTGAATTTCT
* *** * *
91415474 AAAATTACCAAAATACC-CTTAGTTTGTGAAATTACCGAAATACCCTT-AATTTGT
1 AAAATTACCAAAATACCACTGA-TTTACAAAATTACAGAAATACCCTTGAATTTCT
* * *
91415528 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTTGAATTTCT
* * * * * *
91415583 AAAAATTA-TAGAAATACCATTGGTTTACAAAATGACTGAAATACCTTTGA
1 -AAAATTACCA-AAATACCACTGATTTACAAAATTACAGAAATACCCTTGA
91415633 TTTGTTGATT
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 2 0.02
54 80 0.62
55 9 0.07
56 39 0.30
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (55 bp):
AAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTTGAATTTCT
Found at i:91415727 original size:27 final size:27
Alignment explanation
Indices: 91415666--91415753 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
91415656 TTGTAGGATG
* * * *
91415666 AAATGACTAAAATACCCCTAAAAGGTA
1 AAATGACCATAATACCCCTATAGGGTA
* *
91415693 AAAAGACCGTAA-AGCCCCTATAGGGTA
1 AAATGACCATAATA-CCCCTATAGGGTA
* * *
91415720 AAGTGACCATAATACCCCTGTATGGTA
1 AAATGACCATAATACCCCTATAGGGTA
91415747 AAATGAC
1 AAATGAC
91415754 GAATATGCCC
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.02
27 45 0.96
28 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCATAATACCCCTATAGGGTA
Found at i:91416939 original size:25 final size:25
Alignment explanation
Indices: 91416910--91416957 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
91416900 TTATAATATG
* *
91416910 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
91416935 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
91416958 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:91417008 original size:9 final size:9
Alignment explanation
Indices: 91416996--91417052 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
91416986 TTTGATAAAC
91416996 ATGATATGT
1 ATGATATGT
*
91417005 ATGATATGCAC
1 ATGATATG--T
*
91417016 ATGACATGT
1 ATGATATGT
*
91417025 ATGATATGCAC
1 ATGATATG--T
91417036 ATGATATGT
1 ATGATATGT
91417045 ATGATATG
1 ATGATATG
91417053 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:91417019 original size:20 final size:20
Alignment explanation
Indices: 91416994--91417064 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
91416984 ATTTTGATAA
91416994 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
91417014 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
91417034 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
91417054 ACATGAGATGT
1 ACATGATATGT
91417065 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91417041 original size:11 final size:11
Alignment explanation
Indices: 91417005--91417059 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
91416995 CATGATATGT
91417005 ATGATATGCAC
1 ATGATATGCAC
* *
91417016 ATGACATG--T
1 ATGATATGCAC
91417025 ATGATATGCAC
1 ATGATATGCAC
*
91417036 ATGATATG--T
1 ATGATATGCAC
91417045 ATGATATGCAC
1 ATGATATGCAC
91417056 ATGA
1 ATGA
91417060 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:91417143 original size:23 final size:23
Alignment explanation
Indices: 91417110--91417278 Score: 239
Period size: 23 Copynumber: 7.2 Consensus size: 23
91417100 GAGGAAGTGC
91417110 AAAAGGGCTTATGCCCCAGTTATT
1 AAAA-GGCTTATGCCCCAGTTATT
*
91417134 AAAAGGCTTATGCCCTAGTTATT
1 AAAAGGCTTATGCCCCAGTTATT
* *
91417157 AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGCTTATGCCCCAGTTATT
91417180 AAAAGGGCTTATGCCCCAGTTATT
1 AAAA-GGCTTATGCCCCAGTTATT
* * *
91417204 AAAGGGCTTATGCCCCAGTGATC
1 AAAAGGCTTATGCCCCAGTTATT
91417227 AAAAGGGCTTATGCCCCAGTTATT
1 AAAA-GGCTTATGCCCCAGTTATT
* *
91417251 AAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGCTTATGCCCCAGTTATT
91417274 AAAAG
1 AAAAG
91417279 AGGCAAGGCC
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
23 83 0.65
24 45 0.35
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGCTTATGCCCCAGTTATT
Found at i:91417207 original size:47 final size:47
Alignment explanation
Indices: 91417111--91417278 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
91417101 AGGAAGTGCA
* *
91417111 AAAGGGCTTATGCCCCAGTTATTAAAA-GGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
91417157 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
91417204 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
91417251 AAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAG
91417279 AGGCAAGGCC
Statistics
Matches: 115, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 26 0.23
47 89 0.77
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:91417255 original size:70 final size:70
Alignment explanation
Indices: 91417109--91417278 Score: 270
Period size: 70 Copynumber: 2.4 Consensus size: 70
91417099 GGAGGAAGTG
* * *
91417109 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTGATAAAAGGGCTTATGCCCCA
91417174 GTTAT
66 GTTAT
*
91417179 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTGAT-AAAAGGGCTTATGCCCC
91417244 AGTTAT
65 AGTTAT
* *
91417250 -TAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAG
91417279 AGGCAAGGCC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
70 70 0.76
71 22 0.24
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTGATAAAAGGGCTTATGCCCCA
GTTAT
Found at i:91417481 original size:42 final size:42
Alignment explanation
Indices: 91417426--91417505 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
91417416 CCAAATGGGT
**
91417426 TTGCATACATTCATTGGTATT-TCATGTGATATTGAAATGAGC
1 TTGCATACATTCATTGACATTAT-ATGTGATATTGAAATGAGC
* *
91417468 TTGCATTCTTTCATTGACATTATATGTGATATTGAAAT
1 TTGCATACATTCATTGACATTATATGTGATATTGAAAT
91417506 AGGCCTATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (42 bp):
TTGCATACATTCATTGACATTATATGTGATATTGAAATGAGC
Found at i:91423975 original size:13 final size:13
Alignment explanation
Indices: 91423951--91423975 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91423941 GGTCACACAA
91423951 TCGTGTCACACGG
1 TCGTGTCACACGG
91423964 TCGTGTCACACG
1 TCGTGTCACACG
91423976 TTGTGTCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (13 bp):
TCGTGTCACACGG
Found at i:91425732 original size:68 final size:70
Alignment explanation
Indices: 91425660--91425857 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
91425650 ACACCCTGTA
* * * *
91425660 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
91425722 ATAAAT
65 ATAAAT
*
91425728 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
91425793 ATAAAT
65 ATAAAT
*
91425799 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
91425858 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:91425771 original size:41 final size:41
Alignment explanation
Indices: 91425726--91425843 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91425716 TGAAAGATAA
91425726 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91425767 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91425797 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91425838 ATGTAG
1 ATGTAG
91425844 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91425783 original size:71 final size:71
Alignment explanation
Indices: 91425694--91425857 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91425684 GAGATGTATC
91425694 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91425759 AGGACA
66 AGGACA
91425765 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91425830 AGGACA
66 AGGACA
91425836 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91425858 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91428807 original size:28 final size:28
Alignment explanation
Indices: 91428775--91428830 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
91428765 TATGTTTTAA
*
91428775 CACTTTTAAATTTTTAATTAACAAAAAT
1 CACTTTTAAATTTTTAACTAACAAAAAT
91428803 CACTTTTAAATTTTTAACTAACAAAAAT
1 CACTTTTAAATTTTTAACTAACAAAAAT
91428831 AACACATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (28 bp):
CACTTTTAAATTTTTAACTAACAAAAAT
Found at i:91429866 original size:58 final size:58
Alignment explanation
Indices: 91429803--91429917 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
91429793 TTCAATCCCC
*
91429803 TTAGTCGAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
1 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
91429861 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
1 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
91429918 GTCTTGGGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (58 bp):
TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
Found at i:91433425 original size:79 final size:79
Alignment explanation
Indices: 91433325--91433478 Score: 290
Period size: 79 Copynumber: 1.9 Consensus size: 79
91433315 ACCGACTGAT
*
91433325 GTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGTTGGTTCTCCCCGAAATGCGTTGA
1 GTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGA
91433390 GGCGCAGCAGATGA
66 GGCGCAGCAGATGA
*
91433404 GTTGTGGTTAGGGGTGAAATGCCACTCGAACCTAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGA
1 GTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGA
91433469 GGCGCAGCAG
66 GGCGCAGCAG
91433479 TTGACTGGAC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (79 bp):
GTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGA
GGCGCAGCAGATGA
Found at i:91438903 original size:26 final size:26
Alignment explanation
Indices: 91438874--91438929 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
91438864 TGATACAAAT
91438874 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
*
91438900 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGATAAATGTTCCA
91438926 TGAT
1 TGAT
91438930 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGATAAATGTTCCA
Found at i:91447022 original size:25 final size:26
Alignment explanation
Indices: 91446981--91447083 Score: 183
Period size: 25 Copynumber: 4.0 Consensus size: 26
91446971 TGGTACAAAT
91446981 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91447007 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91447032 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91447058 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91447083 T
1 T
91447084 AATGGGAATT
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
25 43 0.58
26 31 0.42
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91447036 original size:51 final size:51
Alignment explanation
Indices: 91446981--91447079 Score: 198
Period size: 51 Copynumber: 1.9 Consensus size: 51
91446971 TGGTACAAAT
91446981 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
91447032 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTT
91447080 CCATAATGGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
Found at i:91457147 original size:43 final size:43
Alignment explanation
Indices: 91457086--91457168 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
91457076 TGAGAGTATT
91457086 AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAATATG
1 AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAATATG
91457129 AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAAT
1 AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAAT
91457169 TGTGAAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.45
Consensus pattern (43 bp):
AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAATATG
Found at i:91458367 original size:46 final size:46
Alignment explanation
Indices: 91458220--91458431 Score: 218
Period size: 46 Copynumber: 4.6 Consensus size: 46
91458210 TTATTTGTGT
* * * *
91458220 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCAC-ATTATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * *
91458266 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
*
91458314 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* * * *
91458360 GCCAGTGTAAAACATGTCTAGGACATGCATCGG-CTATGAGA-G-GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
*
91458404 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
91458432 GCATTGACAC
Statistics
Matches: 140, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 61 0.44
47 28 0.20
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:91458457 original size:140 final size:142
Alignment explanation
Indices: 91458220--91458494 Score: 326
Period size: 140 Copynumber: 2.0 Consensus size: 142
91458210 TTATTTGTGT
* * *
91458220 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAAACATGCCTAGGACATGCATCGGCCACATGATGAGTGCCAGTGTAAGACCATGTC
* ** * * *
91458285 TGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
66 TGGGACATGGCATCGACACAGAGACGAAAGCTAGGGTAAGACCAAGTCTGGGACATAGCATCGGC
91458348 CTCGAGATGTAA
131 CTCGAGATGTAA
* * *
91458360 GCCAGTGTAAAACATGTCTAGGACATGCATCGG-C-TATGA-GAGGTGTCAGTGTAAGACCATGT
1 GCCAGTGTAAAACATGCCTAGGACATGCATCGGCCACATGATGA-GTGCCAGTGTAAGACCATGT
* * * * **
91458422 CTGGGACATGGCATTGACACAGATATGTGAAAGCTAGGGTAAGACCAAGTTTGGGACATAGTGTC
65 CTGGGACATGGCATCGACACAGAGA--CGAAAGCTAGGGTAAGACCAAGTCTGGGACATAGCATC
91458487 GGCCTCGA
128 GGCCTCGA
91458495 TTTCGATAGT
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
137 2 0.02
138 42 0.38
139 1 0.01
140 44 0.39
141 12 0.11
142 11 0.10
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (142 bp):
GCCAGTGTAAAACATGCCTAGGACATGCATCGGCCACATGATGAGTGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACACAGAGACGAAAGCTAGGGTAAGACCAAGTCTGGGACATAGCATCGGC
CTCGAGATGTAA
Found at i:91468877 original size:46 final size:46
Alignment explanation
Indices: 91468730--91468903 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
91468720 TTATTTGTGT
* * *
91468730 GCCAGTGTAAGACATGCTTGGGACATGCATCTGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGA-TATGAGA
* ** ** * * *
91468776 GCCAGTGTAAGACCATGTCTAAGACATGGCATCGGTATTGAGACGAGA
1 GCCAGTGTAAGA-CATGCCTGGGACAT-GCATCGGCCTCGATATGAGA
*
91468824 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGATATGTA-A
1 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGATATG-AGA
* * *
91468870 GCCAGTGTAAGACATGTCTCGGACAAGCATCGGC
1 GCCAGTGTAAGACATGCCTGGGACATGCATCGGC
91468904 TGCGAGAGGT
Statistics
Matches: 100, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
46 55 0.55
47 22 0.22
48 22 0.22
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGATATGAGA
Found at i:91469038 original size:49 final size:50
Alignment explanation
Indices: 91468921--91469046 Score: 128
Period size: 49 Copynumber: 2.5 Consensus size: 50
91468911 GGTGTCAATG
* * *
91468921 TAAGACCATGTTTGGGACATGGCATCATCATGGATATGTGAGAGCTAGTG
1 TAAGACCATGTTTGAGACATGGCATCAGCATGGATATGTGAGAGCTAGTC
* * * * * * * *
91468971 TAAGACTATGTCTGAGACATGGCATCGGCCTTGAT-TTTGATAGTTAGTC
1 TAAGACCATGTTTGAGACATGGCATCAGCATGGATATGTGAGAGCTAGTC
* *
91469020 TAAGACCATGTTTAAGACACGGCATCA
1 TAAGACCATGTTTGAGACATGGCATCA
91469047 ACTTGATGGA
Statistics
Matches: 60, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
49 32 0.53
50 28 0.47
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (50 bp):
TAAGACCATGTTTGAGACATGGCATCAGCATGGATATGTGAGAGCTAGTC
Found at i:91470189 original size:51 final size:50
Alignment explanation
Indices: 91470113--91470215 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 50
91470103 TTTAATTCAT
91470113 ACAGGCATGGGACACAGGCATGTCCCTAGATGCTTAGGCCGTATGTGTCAC
1 ACAGGCATGGGACACAGGCATGTCCCT-GATGCTTAGGCCGTATGTGTCAC
* * * * *
91470164 ACAGGTATGGGACACGGGCGTGTCCCTGATGCTTAGGTCGTGTGTGTCAC
1 ACAGGCATGGGACACAGGCATGTCCCTGATGCTTAGGCCGTATGTGTCAC
91470214 AC
1 AC
91470216 GGGCCATCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 23 0.49
51 24 0.51
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.23
Consensus pattern (50 bp):
ACAGGCATGGGACACAGGCATGTCCCTGATGCTTAGGCCGTATGTGTCAC
Found at i:91470236 original size:50 final size:51
Alignment explanation
Indices: 91470133--91470236 Score: 113
Period size: 50 Copynumber: 2.1 Consensus size: 51
91470123 GACACAGGCA
* ** *
91470133 TGTCCCTAGATGCTTAGGCCGTATGTGTCACACAGGTATGGGACACGGGCG
1 TGTCCCTAGATGCTTAGGCCGTATGTGTCACACAGGCATCAGACACGGCCG
* * * *
91470184 TGTCCCT-GATGCTTAGGTCGTGTGTGTCACACGGGCCATCAG-CATGGCCG
1 TGTCCCTAGATGCTTAGGCCGTATGTGTCACACAGG-CATCAGACACGGCCG
91470234 TGT
1 TGT
91470237 TATAATGACC
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
50 34 0.77
51 10 0.23
ACGTcount: A:0.16, C:0.25, G:0.33, T:0.26
Consensus pattern (51 bp):
TGTCCCTAGATGCTTAGGCCGTATGTGTCACACAGGCATCAGACACGGCCG
Found at i:91470279 original size:21 final size:20
Alignment explanation
Indices: 91470246--91470284 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91470236 TTATAATGAC
*
91470246 CACACGAGCGTGTTGCCCTTT
1 CACACGAGAGTG-TGCCCTTT
*
91470267 CACACGGGAGTGTGCCCT
1 CACACGAGAGTGTGCCCT
91470285 GTTTCAAGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGAGAGTGTGCCCTTT
Found at i:91472002 original size:46 final size:46
Alignment explanation
Indices: 91471949--91472113 Score: 133
Period size: 46 Copynumber: 3.5 Consensus size: 46
91471939 TGTGTGAGCT
91471949 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTACGAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTACGAGAACC
* ** *
91471995 AGTGTAAGACCATGTCTGGGACATGGCA-T--CAACATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCACATT---ACGAGAACC
* * *** *
91472043 AGTGTAAGACATGTCTGGGATATGCATCGG-CATCGGGAC-ATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCA-CATTACGAGAA-CC
*
91472089 AGTGTAAGACATGTCTAGGACATGC
1 AGTGTAAGACATGTCTGGGACATGC
91472114 GTCGGCTACG
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
45 7 0.08
46 38 0.41
47 28 0.30
48 19 0.20
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCACATTACGAGAACC
Found at i:91472138 original size:46 final size:46
Alignment explanation
Indices: 91471949--91472214 Score: 141
Period size: 47 Copynumber: 5.7 Consensus size: 46
91471939 TGTGTGAGCT
* * * *
91471949 AGTGTAAGACATGTCTGGGACATGCATTGGCCA-C-ATTACGAGAA-CC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CATCGA-GAC-ATAAGCC
* ** * *
91471995 AGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGACGAGT--GCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGAC-A-TAAGCC
* * *
91472043 AGTGTAAGACATGTCTGGGATATGCATCGGCATCGGGACATAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACATAAGCC
* ** * *
91472089 AGTGTAAGACATGTCTAGGACATGCGTCGGC-TACGAGATGTTAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCAT-CGAGACATAAGCC
* * * ** * * *
91472135 AGTGTAAGACCATGTCTGGGATATGGCTTCAAC-TTGAGATATGAGCC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGACATAAGCC
*
91472182 AGTGTAAGACCGTGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
91472215 GCCTTAACCA
Statistics
Matches: 173, Mismatches: 36, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 68 0.39
47 77 0.45
48 24 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACATAAGCC
Found at i:91472174 original size:47 final size:47
Alignment explanation
Indices: 91471993--91472211 Score: 164
Period size: 46 Copynumber: 4.7 Consensus size: 47
91471983 ATTACGAGAA
*
91471993 CCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGACGAGT-G
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGAC-A-TAG
* * ** *
91472041 CTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGCATCGGGACATAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGACAT-AG
* * ** **
91472087 CCAGTGTAAGA-CATGTCTAGGACAT-GCGTCGGC-TACGAGATGTTAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAACAT-CGAGA-CATAG
* * * * *
91472133 TCAGTGTAAGACCATGTCTGGGATATGGCTTCAAC-TTGAGATATGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGACAT-AG
* *
91472180 CCAGTGTAAGACCGTGTCTAGGACATGGCATC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC
91472212 GGCGCCTTAA
Statistics
Matches: 137, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 59 0.43
47 59 0.43
48 16 0.12
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGACATAG
Found at i:91479951 original size:47 final size:46
Alignment explanation
Indices: 91479788--91479951 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 46
91479778 TGTGTGAGCT
* * *
91479788 AGTGTAAGACATGTCTGGGACATACATCGGCCACAT-TACG-AGAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-TGGACGTA-AGCC
*
91479834 AGTGTAAGAACATGTCTGGGACATGCATTGGCCACTGGACGTAAGCC
1 AGTGTAAG-ACATGTCTGGGACATGCATCGGCCACTGGACGTAAGCC
* * * * *
91479881 AGTGTAAGACATGTCTGAGACATGCGTCGGCTAC-GAGATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACTG-GACGTA-AGCC
91479927 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
91479952 GCTTCGACTT
Statistics
Matches: 101, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
45 2 0.02
46 46 0.46
47 52 0.51
48 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACTGGACGTAAGCC
Found at i:91479966 original size:47 final size:46
Alignment explanation
Indices: 91479880--91479979 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 46
91479870 GGACGTAAGC
*
91479880 CAGTGTAAGACATGTCTGAGACATGCGTCGGCTACGAGATGAT-AGT
1 CAGTGTAAGACATGTCTGAGACATGCGTCGACTACGAGAT-ATGAGT
* * *
91479926 CAGTGTAAGACCATGTCTGGGACATGGCTTCGACT-TGAGATATGAGT
1 CAGTGTAAGA-CATGTCTGAGACAT-GCGTCGACTACGAGATATGAGT
*
91479973 TAGTGTA
1 CAGTGTA
91479980 CCATGTCTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
46 12 0.26
47 27 0.59
48 7 0.15
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGAGACATGCGTCGACTACGAGATATGAGT
Found at i:91481158 original size:21 final size:21
Alignment explanation
Indices: 91481118--91481156 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
91481108 GTCGAAATGG
91481118 TCACACGGGCGTGTTGCCCTT
1 TCACACGGGCGTGTTGCCCTT
91481139 TCACACGGGCGTG-TGCCC
1 TCACACGGGCGTGTTGCCC
91481157 CTATGTCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
TCACACGGGCGTGTTGCCCTT
Found at i:91485636 original size:5 final size:5
Alignment explanation
Indices: 91485626--91485650 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
91485616 AGGTGATCAT
91485626 GGGCC GGGCC GGGCC GGGCC GGGCC
1 GGGCC GGGCC GGGCC GGGCC GGGCC
91485651 CAAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.60, T:0.00
Consensus pattern (5 bp):
GGGCC
Found at i:91485825 original size:25 final size:26
Alignment explanation
Indices: 91485797--91485854 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
91485787 CTTATTTCAT
*
91485797 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
91485822 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
91485848 -AAATAAA
1 TAAATAAA
91485855 TATTAAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:91485839 original size:26 final size:24
Alignment explanation
Indices: 91485809--91485857 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
91485799 AATAAAAAAT
*
91485809 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAAT-AAATATA
91485835 TTTAAAAACATAAAAATAAATAT
1 TTTAAAAACATAAAAATAAATAT
91485858 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
TTTAAAAACATAAAAATAAATATA
Found at i:91485869 original size:22 final size:20
Alignment explanation
Indices: 91485828--91485875 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
91485818 ATAATAAATC
* *
91485828 AAATATATTTAAAAACATAA
1 AAATAAATTTAAAAAAATAA
91485848 AAATAAATATTAAAACAAATAA
1 AAATAAAT-TTAAAA-AAATAA
91485870 AAATAA
1 AAATAA
91485876 TACCAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 11 0.46
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (20 bp):
AAATAAATTTAAAAAAATAA
Found at i:91485877 original size:21 final size:21
Alignment explanation
Indices: 91485828--91485886 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
91485818 ATAATAAATC
*
91485828 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
91485848 AAATAAATATTAAAACAAATAA
1 AAAT-AATATTAAAACAAATAA
**
91485870 AAATAATACCAAAACAA
1 AAATAATATTAAAACAA
91485887 TTCTTAAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 4 0.12
21 17 0.52
22 12 0.36
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:91485962 original size:15 final size:16
Alignment explanation
Indices: 91485932--91485964 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
91485922 AAATAGTTAT
91485932 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
91485949 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
91485964 A
1 A
91485965 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:91491939 original size:2 final size:2
Alignment explanation
Indices: 91491932--91491963 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
91491922 ATTGTTGCTT
91491932 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91491964 AAAGCAAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91493033 original size:29 final size:29
Alignment explanation
Indices: 91492996--91493084 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 29
91492986 CTCTCTCTAT
91492996 ATAAATATTCTACATACATTCTATATATG
1 ATAAATATTCTACATACATTCTATATATG
*
91493025 ATAATTATTCT--AT--ATTCTA-A-AT-
1 ATAAATATTCTACATACATTCTATATATG
*
91493047 ATAAATATTCTACACACATTCTATATATG
1 ATAAATATTCTACATACATTCTATATATG
*
91493076 ATAATTATT
1 ATAAATATT
91493085 TTTTTATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
22 10 0.20
23 2 0.04
24 2 0.04
25 6 0.12
26 6 0.12
27 3 0.06
28 2 0.04
29 18 0.37
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (29 bp):
ATAAATATTCTACATACATTCTATATATG
Found at i:91496209 original size:25 final size:24
Alignment explanation
Indices: 91496160--91496212 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
91496150 GTCATTAGGG
* *
91496160 TTACCGATTTCAGCTCTTATAAGC
1 TTACCGATCTCAGCTCGTATAAGC
*
91496184 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGAT-CTCAGCTCGTATAAGC
91496209 TTAC
1 TTAC
91496213 TATTATTCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (24 bp):
TTACCGATCTCAGCTCGTATAAGC
Found at i:91496222 original size:25 final size:25
Alignment explanation
Indices: 91496168--91496282 Score: 74
Period size: 25 Copynumber: 4.6 Consensus size: 25
91496158 GGTTACCGAT
* * *
91496168 TTCAGCTCTTATAAGCTTACCGA-TA
1 TTCAGCTCGTATGAGCTTA-CTATTA
*
91496193 CTCAGCTCGTATGAGCTTACTATTA
1 TTCAGCTCGTATGAGCTTACTATTA
* * * * *
91496218 TTCAGCTTGGAGGAACTTACTGTTA
1 TTCAGCTCGTATGAGCTTACTATTA
* **
91496243 TTCAGCTCAG-AGGAGCTTACCGTT-
1 TTCAGCTC-GTATGAGCTTACTATTA
*
91496267 TACAGCTCGTATGAGC
1 TTCAGCTCGTATGAGC
91496283 ATAATTGTAC
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
23 1 0.01
24 14 0.19
25 56 0.78
26 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACTATTA
Found at i:91499054 original size:24 final size:24
Alignment explanation
Indices: 91499022--91499071 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
91499012 ACTCATTATA
91499022 GATAATGCATTGATATATATTGAT
1 GATAATGCATTGATATATATTGAT
*
91499046 GATAATGCATTGATGTATATTGAT
1 GATAATGCATTGATATATATTGAT
91499070 GA
1 GA
91499072 CATCCTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (24 bp):
GATAATGCATTGATATATATTGAT
Found at i:91499059 original size:14 final size:14
Alignment explanation
Indices: 91499022--91499060 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
91499012 ACTCATTATA
91499022 GATAATGCATTGAT
1 GATAATGCATTGAT
91499036 -AT-AT--ATTGAT
1 GATAATGCATTGAT
91499046 GATAATGCATTGAT
1 GATAATGCATTGAT
91499060 G
1 G
91499061 TATATTGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 6 0.29
11 2 0.10
12 4 0.19
13 2 0.10
14 7 0.33
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (14 bp):
GATAATGCATTGAT
Found at i:91500887 original size:14 final size:14
Alignment explanation
Indices: 91500870--91500906 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
91500860 AAAAAAAAAG
*
91500870 AGCAAAAAAATTCC
1 AGCAAAAAAAATCC
91500884 AGCAAAAAAAATCC
1 AGCAAAAAAAATCC
91500898 A--AAAAAAAA
1 AGCAAAAAAAA
91500907 CATTAGCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 8 0.36
14 14 0.64
ACGTcount: A:0.70, C:0.16, G:0.05, T:0.08
Consensus pattern (14 bp):
AGCAAAAAAAATCC
Found at i:91501151 original size:19 final size:19
Alignment explanation
Indices: 91501114--91501154 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
91501104 TGTTTTCATA
* *
91501114 TTTTCTTTCCTTGGTTTTT
1 TTTTCTTTCCTTAGATTTT
*
91501133 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
91501152 TTT
1 TTT
91501155 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:91514182 original size:75 final size:74
Alignment explanation
Indices: 91514036--91514814 Score: 936
Period size: 75 Copynumber: 10.1 Consensus size: 74
91514026 TTTATTTATG
* * * *
91514036 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
91514101 AATTTCTGTT
65 AATTTCTGTT
** ** *
91514111 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGATATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGTTGAGGTATTTT
*
91514175 CAATTTCTATT
64 CAATTTCTGTT
91514186 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
91514251 ATTTCTGTTCAATTTATGT
66 ATTTCTG---------T-T
**
91514270 CTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 -TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
91514335 CAATTTCT-TCC
64 CAATTTCTGT-T
**
91514346 TTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
91514411 TCAATTTCTGTCT
63 TCAATTTCTGT-T
*
91514424 TTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
*
91514489 ATTTCTGTC
66 ATTTCTGTT
*
91514498 TTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
* *
91514563 ATTTTTGTC
66 ATTTCTGTT
**
91514572 TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
91514637 AATTTCTGTC
65 AATTTCTGTT
* * *
91514647 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
* **
91514711 TTTAATTTCTACT
62 TTCAATTTCTGTT
* * * *
91514724 TTTCAAAAAAATCAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAA-ATCACGCCCTAAGG
1 TTTC---AAAA--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CACG--TTGAGG
91514788 TATTTTCAATTTCTGTT
58 TATTTTCAATTTCTGTT
91514805 TTTCAAAAAA
1 TTTCAAAAAA
91514815 AAAATAAAAA
Statistics
Matches: 631, Mismatches: 43, Indels: 59
0.86 0.06 0.08
Matches are distributed among these distances:
73 39 0.06
74 99 0.16
75 212 0.34
76 42 0.07
77 94 0.15
78 10 0.02
79 8 0.01
81 56 0.09
83 1 0.00
84 1 0.00
85 4 0.01
86 65 0.10
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTCTGTT
Found at i:91514580 original size:149 final size:150
Alignment explanation
Indices: 91514036--91514815 Score: 991
Period size: 149 Copynumber: 5.1 Consensus size: 150
91514026 TTTATTTATG
* * * *
91514036 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** *
91514101 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGC
66 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGT
* * * *
91514164 CGAGATATTTTCAATTTCTATT
129 TGAGGTATTTTCAATTTCTGTC
91514186 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
**
91514250 AATTTCTGTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 AA----T-TTC------TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
91514315 AAGACACGTTGAGGTATTTTCAATTTCT-TCC
120 AAGACACGTTGAGGTATTTTCAATTTCTGT-C
**
91514346 TTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
*
91514411 TCAATTTCTGTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
64 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
91514476 TGAGGTATTTTCAATTTCTGTC
129 TGAGGTATTTTCAATTTCTGTC
91514498 TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* **
91514562 AATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
66 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
91514627 AGGTATTTTCAATTTCTGTC
131 AGGTATTTTCAATTTCTGTC
* * *
91514647 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
* * * *
91514711 TTTAATTTCT-ACTTTTCAAAAAAATCAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAA-
63 TTCAATTTCTGTC-TTTC--AAAAA--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
* * *
91514774 ATCACGCCCTAAGGTATTTTCAATTTCTGTT
123 A-CACG--TTGAGGTATTTTCAATTTCTGTC
91514805 TTTCAAAAAAA
1 TTTCAAAAAAA
91514816 AAATAAAAAA
Statistics
Matches: 563, Mismatches: 37, Indels: 52
0.86 0.06 0.08
Matches are distributed among these distances:
149 202 0.36
150 44 0.08
151 1 0.00
152 102 0.18
153 2 0.00
154 8 0.01
155 1 0.00
156 37 0.07
158 34 0.06
159 2 0.00
160 33 0.06
162 37 0.07
163 60 0.11
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (150 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
AGGTATTTTCAATTTCTGTC
Found at i:91515356 original size:14 final size:14
Alignment explanation
Indices: 91515339--91515375 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
91515329 TGAAAAAAAG
*
91515339 AGCAAAAAAATTCC
1 AGCAAAAAAAATCC
91515353 AGCAAAAAAAATCC
1 AGCAAAAAAAATCC
91515367 A--AAAAAAAA
1 AGCAAAAAAAA
91515376 AACATTAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 8 0.36
14 14 0.64
ACGTcount: A:0.70, C:0.16, G:0.05, T:0.08
Consensus pattern (14 bp):
AGCAAAAAAAATCC
Found at i:91515608 original size:19 final size:20
Alignment explanation
Indices: 91515584--91515625 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
91515574 TGTTTTCATA
*
91515584 TTTTCTTTCCTT-GGTTTTT
1 TTTTCTTTCCTTAGATTTTT
*
91515603 TTTTCTTTCTTTAGATTTTT
1 TTTTCTTTCCTTAGATTTTT
91515623 TTT
1 TTT
91515626 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTTCTTTCCTTAGATTTTT
Found at i:91517535 original size:30 final size:30
Alignment explanation
Indices: 91517499--91517597 Score: 155
Period size: 30 Copynumber: 3.3 Consensus size: 30
91517489 CTAGCCTTTG
91517499 CCACCACCAACTCCTCTAGCCACACTTGCT
1 CCACCACCAACTCCTCTAGCCACACTTGCT
* *
91517529 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCTCTAGCCACACTTGCT
*
91517559 CCACCACCTACTCCAT-TAGCCACACTTGCT
1 CCACCACCAACTCC-TCTAGCCACACTTGCT
91517589 CCACCACCA
1 CCACCACCA
91517598 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.24, C:0.51, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCTCTAGCCACACTTGCT
Found at i:91518172 original size:23 final size:23
Alignment explanation
Indices: 91518124--91518213 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
91518114 ATTCTTTTAA
* * *
91518124 TATATTAGGTATAT-TCTAAATTC
1 TATATTATGTATATATAT-AATAC
*
91518147 TATATTACGTATATATATAATAC
1 TATATTATGTATATATATAATAC
* *
91518170 TATTTTATGTATATATCTTTAATAC
1 TATATTATGTATATA--TATAATAC
*
91518195 TATATTATTTATATATATA
1 TATATTATGTATATATATA
91518214 TTTTTTCTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
23 33 0.60
24 2 0.04
25 20 0.36
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (23 bp):
TATATTATGTATATATATAATAC
Found at i:91518184 original size:25 final size:25
Alignment explanation
Indices: 91518124--91518214 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 25
91518114 ATTCTTTTAA
* * *
91518124 TATATTAGGTATAT-TCTA-AATTC
1 TATATTATGTATATATATATAATAC
*
91518147 TATATTACG--TATATATATAATAC
1 TATATTATGTATATATATATAATAC
* * *
91518170 TATTTTATGTATATATCTTTAATAC
1 TATATTATGTATATATATATAATAC
*
91518195 TATATTATTTATATATATAT
1 TATATTATGTATATATATAT
91518215 TTTTTCTACA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
21 3 0.06
22 3 0.06
23 19 0.36
25 28 0.53
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (25 bp):
TATATTATGTATATATATATAATAC
Found at i:91518206 original size:29 final size:28
Alignment explanation
Indices: 91518173--91518282 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
91518163 ATAATACTAT
91518173 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
91518202 TTTATATATATATTTTTTCTAC-ATGTTA
1 TTTATGTATATA-TTTTAATACTATATTA
91518230 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
91518257 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
91518282 T
1 T
91518283 GTACATATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 7 0.11
27 6 0.09
28 11 0.17
29 27 0.41
30 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Done.