Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 318 of 444
Found at i:91782383 original size:15 final size:16
Alignment explanation
Indices: 91782350--91782383 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
91782340 TTATGTTTTC
91782350 AAATGAAATAATGTAA
1 AAATGAAATAATGTAA
*
91782366 AAATTAAATAAT-TAA
1 AAATGAAATAATGTAA
91782381 AAA
1 AAA
91782384 GAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
AAATGAAATAATGTAA
Found at i:91783221 original size:24 final size:24
Alignment explanation
Indices: 91783194--91783272 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
91783184 AGCAAAAACC
91783194 ATAATTGAAAGATGTCATGACATT
1 ATAATTGAAAGATGTCATGACATT
* * ** * *
91783218 ATAATCGAAA-AGGAAAAGAC--C
1 ATAATTGAAAGATGTCATGACATT
* *
91783239 ATGATTGAAAGATATCATGACATT
1 ATAATTGAAAGATGTCATGACATT
91783263 ATAATTGAAA
1 ATAATTGAAA
91783273 AGGAAAAGAC
Statistics
Matches: 37, Mismatches: 15, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
21 8 0.22
22 5 0.14
23 6 0.16
24 18 0.49
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (24 bp):
ATAATTGAAAGATGTCATGACATT
Found at i:91783348 original size:45 final size:45
Alignment explanation
Indices: 91783180--91783342 Score: 215
Period size: 45 Copynumber: 3.6 Consensus size: 45
91783170 CATTTTTTGA
* * * *
91783180 GAAAAGCAAAA-ACCATAATTGAAAGATGTCATGACATTATAATC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
91783224 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
* * *
91783269 GAAAAGGAAAAGACCATGATTAAAAGATATTATGGA-ATTGTAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCAT-GACATTATAATT
*
91783314 GAAAAGGAAAATACCAT-AGTTGAAAGATA
1 GAAAAGGAAAAGACCATGA-TTGAAAGATA
91783343 CTATGGTATT
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
44 11 0.10
45 94 0.88
46 2 0.02
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (45 bp):
GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
Found at i:91785734 original size:47 final size:47
Alignment explanation
Indices: 91785669--91785781 Score: 172
Period size: 47 Copynumber: 2.4 Consensus size: 47
91785659 TTGTTACTAT
* * *
91785669 TACCGTTACTGTTACTGTTTCGGATTTGTTTCGATGAGGTACTCCGTG
1 TACCG-TACTGTTACTGTTCCGAATTTGTTCCGATGAGGTACTCCGTG
*
91785717 TACCGTACTGTTACTGTTCCGAATTTGTTCCGATGAGGTACTCTGTG
1 TACCGTACTGTTACTGTTCCGAATTTGTTCCGATGAGGTACTCCGTG
*
91785764 TACCGTACTGCTACTGTT
1 TACCGTACTGTTACTGTT
91785782 ACTATTACTG
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
47 55 0.92
48 5 0.08
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (47 bp):
TACCGTACTGTTACTGTTCCGAATTTGTTCCGATGAGGTACTCCGTG
Found at i:91785977 original size:18 final size:19
Alignment explanation
Indices: 91785913--91785982 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 19
91785903 AGAAAGATCG
91785913 ACTGTTACTGAATAATTTA
1 ACTGTTACTGAATAATTTA
* * * * *
91785932 ATTATTATTGTAT-ATTTG
1 ACTGTTACTGAATAATTTA
* *
91785950 ATTTTTACTGAATAATTT-
1 ACTGTTACTGAATAATTTA
*
91785968 ACTGTTACTGGATAA
1 ACTGTTACTGAATAA
91785983 CCGATCAATT
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (19 bp):
ACTGTTACTGAATAATTTA
Found at i:91786023 original size:18 final size:18
Alignment explanation
Indices: 91785999--91786062 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
91785989 AATTGATTGA
91785999 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
91786017 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
* * *
91786035 TACCGAATAACTAACTAT
1 TACTGAATAACTGATTAT
*
91786053 TACTAAATAA
1 TACTGAATAA
91786063 ATAATTGTTC
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:91786062 original size:36 final size:36
Alignment explanation
Indices: 91785989--91786071 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
91785979 ATAACCGATC
* * * * * *
91785989 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGTTACCGAATAACTAACTATTACTAAAT
91786025 AATTGATTGTTACCGAATAACTAACTATTACTAAAT
1 AATTGATTGTTACCGAATAACTAACTATTACTAAAT
* *
91786061 AAATAATTGTT
1 AATTGATTGTT
91786072 CTGATTGACT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (36 bp):
AATTGATTGTTACCGAATAACTAACTATTACTAAAT
Found at i:91792240 original size:17 final size:17
Alignment explanation
Indices: 91792218--91792260 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
91792208 AAAGTGTCTC
*
91792218 CTTTAGGTTTATTTGCA
1 CTTTAGGTCTATTTGCA
91792235 CTTTAGGTCTATTTGCA
1 CTTTAGGTCTATTTGCA
91792252 CTTTAGGTC
1 CTTTAGGTC
91792261 CTTCCTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.49
Consensus pattern (17 bp):
CTTTAGGTCTATTTGCA
Found at i:91793186 original size:22 final size:22
Alignment explanation
Indices: 91793158--91793202 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
91793148 AGCTTACAAA
91793158 AAGGACCAAGCCTGATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
*
91793180 AAGGACCAAGCCTTATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
91793202 A
1 A
91793203 GGTGTGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (22 bp):
AAGGACCAAGCCTGATAAAAAG
Found at i:91796057 original size:3 final size:3
Alignment explanation
Indices: 91796036--91796096 Score: 97
Period size: 3 Copynumber: 20.0 Consensus size: 3
91796026 GGTACGATTT
91796036 ATA ATA A-A ATA CATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91796082 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
91796097 GTAGTAGTAG
Statistics
Matches: 55, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.04
3 48 0.87
4 4 0.07
5 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:91798938 original size:9 final size:9
Alignment explanation
Indices: 91798900--91798961 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
91798890 ATCTAAGATT
91798900 TTATT-TAA
1 TTATTATAA
91798908 GTTATATATAA
1 -TTAT-TATAA
*
91798919 ATATATATAA
1 TTAT-TATAA
91798929 TTATTATAA
1 TTATTATAA
*
91798938 TTATTATTA
1 TTATTATAA
*
91798947 TTATTATTA
1 TTATTATAA
91798956 TTATTA
1 TTATTA
91798962 AATAAAGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
9 32 0.67
10 13 0.27
11 3 0.06
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
TTATTATAA
Found at i:91798943 original size:3 final size:3
Alignment explanation
Indices: 91798928--91798961 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
91798918 AATATATATA
*
91798928 ATT ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
91798962 AATAAAGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:91799807 original size:23 final size:21
Alignment explanation
Indices: 91799765--91799808 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
91799755 TAGGAATTAG
91799765 GGTGTGTCGTTTTCTCCTTTT
1 GGTGTGTCGTTTTCTCCTTTT
*
91799786 GGTGTAGTCTTTTCTCTCCTTTT
1 GGTGT-GTCGTTT-TCTCCTTTT
91799809 TCTTTTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 6 0.30
23 9 0.45
ACGTcount: A:0.02, C:0.20, G:0.20, T:0.57
Consensus pattern (21 bp):
GGTGTGTCGTTTTCTCCTTTT
Found at i:91801036 original size:20 final size:20
Alignment explanation
Indices: 91801003--91801077 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
91800993 ATGTGTGGGA
91801003 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
91801020 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
91801041 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
91801061 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
91801078 GTAATCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:91801038 original size:11 final size:11
Alignment explanation
Indices: 91801022--91801077 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
91801012 CATGATTGAT
91801022 ATGATATGCAC
1 ATGATATGCAC
*
91801033 ATGATATG--T
1 ATGATATGCAC
91801042 ATGATATGCAC
1 ATGATATGCAC
*
91801053 ATGATATG--T
1 ATGATATGCAC
*
91801062 ATGAAATGCAC
1 ATGATATGCAC
91801073 ATGAT
1 ATGAT
91801078 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:91801224 original size:25 final size:26
Alignment explanation
Indices: 91801127--91801224 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
91801117 GAGGAAGTGC
91801127 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
91801153 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
91801179 AAAATGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
91801205 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
91801225 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 10 0.14
26 59 0.86
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:91803412 original size:16 final size:16
Alignment explanation
Indices: 91803391--91803423 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
91803381 CTAGTCGAAA
*
91803391 ATAGTTGGCATGCCAT
1 ATAGTTAGCATGCCAT
91803407 ATAGTTAGCATGCCAT
1 ATAGTTAGCATGCCAT
91803423 A
1 A
91803424 GGATATGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (16 bp):
ATAGTTAGCATGCCAT
Found at i:91803543 original size:6 final size:6
Alignment explanation
Indices: 91803532--91803575 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
91803522 GTGTGTCGAA
* * *
91803532 TACTGT TACTGT TACGGT TACTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
91803576 TAGGTATTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:91804767 original size:42 final size:42
Alignment explanation
Indices: 91804714--91804810 Score: 187
Period size: 42 Copynumber: 2.3 Consensus size: 42
91804704 CGTGTCGCAT
91804714 GGCCGTGTGTGACACACGGTTGTGACACACACCTGTGTCTTA
1 GGCCGTGTGTGACACACGGTTGTGACACACACCTGTGTCTTA
91804756 GGCCGTGTGTGACACACGGTTGTGACACACACCTGTGTCTTA
1 GGCCGTGTGTGACACACGGTTGTGACACACACCTGTGTCTTA
91804798 GGCCGTGTG-GACA
1 GGCCGTGTGTGACA
91804811 AGAAATAGGC
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.07
42 51 0.93
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (42 bp):
GGCCGTGTGTGACACACGGTTGTGACACACACCTGTGTCTTA
Found at i:91809384 original size:14 final size:14
Alignment explanation
Indices: 91809365--91809393 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91809355 GAAGCATAAA
91809365 TGTACAAAATATTC
1 TGTACAAAATATTC
91809379 TGTACAAAATATTC
1 TGTACAAAATATTC
91809393 T
1 T
91809394 AACATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (14 bp):
TGTACAAAATATTC
Found at i:91810141 original size:19 final size:19
Alignment explanation
Indices: 91810106--91810184 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
91810096 AAATTACAAG
91810106 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
91810127 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91810146 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
91810163 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91810182 ATC
1 ATC
91810185 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.54
20 1 0.02
21 7 0.13
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:91810174 original size:36 final size:39
Alignment explanation
Indices: 91810106--91810184 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 39
91810096 AAATTACAAG
*
91810106 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
91810146 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
91810182 ATC
1 ATC
91810185 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:91810184 original size:14 final size:15
Alignment explanation
Indices: 91810147--91810184 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
91810137 AGATTGCATA
91810147 TCATATCTAAGATTG
1 TCATATCTAAGATTG
91810162 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
91810179 -CATATC
1 TCATATC
91810185 CTTAAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:91810693 original size:47 final size:47
Alignment explanation
Indices: 91810572--91810742 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 47
91810562 GTAAGCCGCC
91810572 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCACATT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATT
* *
91810618 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-T
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C--GTTCACATT
* * * *
91810667 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCACATC
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATT
* *
91810711 CA-AAGTGAACTCAGACTCAACTCAACGAGCTC
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTC
91810743 AGATGCCCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 24 0.23
46 33 0.32
47 27 0.26
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (47 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATT
Found at i:91810748 original size:92 final size:93
Alignment explanation
Indices: 91810578--91810749 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
91810568 CGCCCATAAG
* * *
91810578 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATTCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
91810643 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
91810671 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA-AAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
91810735 ACGAGCTCAGATGCC
66 ACGAGCTCAGATGCC
91810750 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 36 0.49
93 38 0.51
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:91812737 original size:33 final size:33
Alignment explanation
Indices: 91812695--91812761 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
91812685 AGGATTTAGG
91812695 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
91812728 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
91812761 T
1 T
91812762 CCATAAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
TATGTCACACTATGAACGTTACAAGTGAATAAA
Found at i:91819371 original size:1 final size:1
Alignment explanation
Indices: 91819365--91819398 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
91819355 TTCGTTGTTC
* *
91819365 TTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
91819399 CCATTGTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:91819381 original size:14 final size:13
Alignment explanation
Indices: 91819362--91819398 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
91819352 TGGTTCGTTG
91819362 TTCTTTTTTTTTCT
1 TTCTTTTTTTTT-T
91819376 TTCTTTTTTTTTT
1 TTCTTTTTTTTTT
91819389 TT-TTTTTTTT
1 TTCTTTTTTTT
91819399 CCATTGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 8 0.35
13 3 0.13
14 12 0.52
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTCTTTTTTTTTT
Found at i:91821592 original size:2 final size:2
Alignment explanation
Indices: 91821585--91821616 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
91821575 ATTTATGTTT
91821585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91821617 ATGTGAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91826082 original size:11 final size:11
Alignment explanation
Indices: 91826066--91826090 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91826056 AATTTGCGAA
91826066 AAAAATAAAAT
1 AAAAATAAAAT
91826077 AAAAATAAAAT
1 AAAAATAAAAT
91826088 AAA
1 AAA
91826091 GAAAACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:91827764 original size:21 final size:20
Alignment explanation
Indices: 91827738--91827786 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
91827728 TATTCACTAA
*
91827738 TTAATTTTCATAATGGATGTT
1 TTAATTTTCATAAT-AATGTT
*
91827759 TTAATTCTTGATAATAATGTT
1 TTAATT-TTCATAATAATGTT
91827780 TT-ATTTT
1 TTAATTTT
91827787 AATGATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 13 0.52
22 7 0.28
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.57
Consensus pattern (20 bp):
TTAATTTTCATAATAATGTT
Found at i:91829153 original size:3 final size:3
Alignment explanation
Indices: 91829145--91829175 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
91829135 TGTGTGATGA
91829145 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
91829176 AAATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:91836068 original size:10 final size:10
Alignment explanation
Indices: 91836053--91836078 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
91836043 ATCGTACAAC
91836053 AACTAAGCAG
1 AACTAAGCAG
91836063 AACTAAGCAG
1 AACTAAGCAG
91836073 AACTAA
1 AACTAA
91836079 CTCGCTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.19, G:0.15, T:0.12
Consensus pattern (10 bp):
AACTAAGCAG
Found at i:91837892 original size:47 final size:47
Alignment explanation
Indices: 91837730--91837893 Score: 160
Period size: 47 Copynumber: 3.5 Consensus size: 47
91837720 TTTGTTCGCT
91837730 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCCACATT-ATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCAG--AC-TTGATGATGAGCC
* * * * * * *
91837776 AGTGTAAGACCATGTCTGGGATATTACGTCGGCCTCGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGACATCAGACTTGA--T-GATGAGCC
91837825 AGTGTAAGACCATGTCTGGGACATGACATC-GACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCAGACTTGAT-GATGAGCC
91837872 AGTGTAAGACCATGTCTGGGAC
1 AGTGTAAGACCATGTCTGGGAC
91837894 GTGGCATCGG
Statistics
Matches: 96, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 15 0.16
47 38 0.40
48 10 0.10
49 32 0.33
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGACATCAGACTTGATGATGAGCC
Found at i:91837904 original size:96 final size:94
Alignment explanation
Indices: 91837730--91837904 Score: 230
Period size: 96 Copynumber: 1.8 Consensus size: 94
91837720 TTTGTTCGCT
91837730 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACATTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
91837795 GATATTACGTCGGCCTCGATTTCGATAGTC
65 GACATGACATCGGCCTCGATTTCGATAGTC
91837825 AGTGTAAGACCATGTCTGGGACATGACATC-G-AC-TTGATGGATGAGCCAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCACATT-AT-GA-GAGCCAGTGTAAGACCATGT
* *
91837887 CTGGGACGTGGCATCGGC
61 CTGGGACATGACATCGGC
91837905 ATTACACTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
93 2 0.03
94 4 0.06
95 11 0.16
96 49 0.70
97 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACATTATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGACATCGGCCTCGATTTCGATAGTC
Found at i:91843824 original size:21 final size:22
Alignment explanation
Indices: 91843786--91843830 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
91843776 AAAAAAATCG
*
91843786 AACCATAATAATTCACT-AGAA
1 AACCATAATAATTAACTAAGAA
91843807 AACCATAA-AATTAAACTAAGAA
1 AACCATAATAATT-AACTAAGAA
91843829 AA
1 AA
91843831 AAAAATCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 11 0.52
22 6 0.29
ACGTcount: A:0.60, C:0.16, G:0.04, T:0.20
Consensus pattern (22 bp):
AACCATAATAATTAACTAAGAA
Found at i:91847235 original size:16 final size:17
Alignment explanation
Indices: 91847214--91847251 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
91847204 CACCTCAACA
*
91847214 AAAAAT-TTAAAATTAT
1 AAAAATATTAAAATAAT
*
91847230 AAAAATATTCAAATAAT
1 AAAAATATTAAAATAAT
91847247 AAAAA
1 AAAAA
91847252 AAAATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTAAAATAAT
Found at i:91847432 original size:16 final size:18
Alignment explanation
Indices: 91847397--91847434 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
91847387 ATCCTTATTT
*
91847397 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
91847415 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
91847431 AAAT
1 AAAT
91847435 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:91851922 original size:16 final size:18
Alignment explanation
Indices: 91851887--91851924 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
91851877 ATCCTTATTT
*
91851887 AAATAAAATATAGTAGTA
1 AAATAAAATATAGAAGTA
91851905 AAATAAAATA-A-AAGTA
1 AAATAAAATATAGAAGTA
91851921 AAAT
1 AAAT
91851925 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAGAAGTA
Found at i:91852052 original size:50 final size:50
Alignment explanation
Indices: 91851956--91852052 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 50
91851946 TTATTTTATT
* * * *
91851956 TTAGAATAAGGTTTTTTAAATCTTATTAAATTCCATCTATTTAATATCGA
1 TTAGAATAAGATGTTTTAAATCTTATTAAACTCCATCTATTGAATATCGA
*
91852006 TTAGAATAAGATGTTTT-AATCTTATTACACT-CATTCTATTAGAATAT
1 TTAGAATAAGATGTTTTAAATCTTATTAAACTCCA-TCTATT-GAATAT
91852053 GGTTTTACAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.05
49 18 0.45
50 20 0.50
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.45
Consensus pattern (50 bp):
TTAGAATAAGATGTTTTAAATCTTATTAAACTCCATCTATTGAATATCGA
Found at i:91856840 original size:16 final size:16
Alignment explanation
Indices: 91856787--91856840 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
91856777 TTTGCCCGTG
*
91856787 TTTTTAGGGTTAGGGT
1 TTTTTAGGGTTAGTGT
*
91856803 TTTTTAGGGTTTAAT-T
1 TTTTTAGGG-TTAGTGT
**
91856819 GATTTAGGGTTAGTGT
1 TTTTTAGGGTTAGTGT
91856835 TTTTTA
1 TTTTTA
91856841 AGATTTAGGG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 4 0.14
16 22 0.76
17 3 0.10
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.56
Consensus pattern (16 bp):
TTTTTAGGGTTAGTGT
Found at i:91856849 original size:23 final size:23
Alignment explanation
Indices: 91856819--91856871 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
91856809 GGGTTTAATT
* *
91856819 GATTTAGGGTTAGTGTTTTTTAA
1 GATTTAGGGTTAGGGGTTTTTAA
91856842 GATTTAGGGTTAGGGGTTTTTAA
1 GATTTAGGGTTAGGGGTTTTTAA
*
91856865 GGTTTAG
1 GATTTAG
91856872 AATTTAAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (23 bp):
GATTTAGGGTTAGGGGTTTTTAA
Found at i:91857007 original size:20 final size:20
Alignment explanation
Indices: 91856967--91857035 Score: 106
Period size: 19 Copynumber: 3.5 Consensus size: 20
91856957 AGGGTATTAA
91856967 GGTTAATTGATTAAA-TTAG
1 GGTTAATTGATTAAATTTAG
91856986 GGTTAATTGATTAAATTTAG
1 GGTTAATTGATTAAATTTAG
* *
91857006 GGTTAGTTGATT-AATTTGG
1 GGTTAATTGATTAAATTTAG
91857025 GGTTAATTGAT
1 GGTTAATTGAT
91857036 ACATAATCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 31 0.67
20 15 0.33
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (20 bp):
GGTTAATTGATTAAATTTAG
Found at i:91857783 original size:126 final size:126
Alignment explanation
Indices: 91857567--91857934 Score: 574
Period size: 126 Copynumber: 2.9 Consensus size: 126
91857557 AATTTTGAGT
* * *
91857567 AGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTA
1 AGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTAAGCAAAATTTCTG
* *
91857632 AAAAAAGCTCCCACGTTGACACTCTTTTGCTACAGTAGTTCGTAGAAAAATAATTCTGAAC
66 AAAAAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTTCATAGAAAAATAATTCTGAAC
* * *
91857693 AGACGTTTCTGGACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTTAGCAAAATTTTTG
1 AGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTAAGCAAAATTTCTG
* * **
91857758 AAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCATAGAAAAATAATTCTGAGT
66 AAAAAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTTCATAGAAAAATAATTCTGAAC
* * * *
91857819 AGATGTTTCTGAATAAATAGTGTCGAAAACGCTTCAAGTAGAATGCACTGTAAGCAAAATTTCTG
1 AGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTAAGCAAAATTTCTG
* *
91857884 AAAAAAGCTCCCACGTGGGCACTCTTTTGTTACAGTAGTTCATAGAAAAAT
66 AAAAAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTTCATAGAAAAAT
91857935 GAGGCTATAA
Statistics
Matches: 220, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 220 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (126 bp):
AGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTAAGCAAAATTTCTG
AAAAAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTTCATAGAAAAATAATTCTGAAC
Found at i:91863154 original size:48 final size:45
Alignment explanation
Indices: 91863069--91863205 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 45
91863059 ATGCAAACAT
91863069 CATAAATGAAAAAAATCAATCAGTATTGAAATATTAATTATAA-TTG
1 CATAAATGAAAAAAATCAAT-AGTATTGAAAT-TTAATTATAATTTG
91863115 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTA-AATTTG
1 CATAAATGAA-AAAA-ATC-AATAGTATTG-AAATTTAATTATAATTTG
*
91863163 CATAAATTTAAAAAAATCGAATAGTATTGAAAATTTAAATTAT
1 CATAAA-TGAAAAAAATC-AATAGTATTG-AAATTT-AATTAT
91863206 CACTTACCAT
Statistics
Matches: 80, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
46 10 0.12
47 25 0.31
48 35 0.44
49 10 0.12
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (45 bp):
CATAAATGAAAAAAATCAATAGTATTGAAATTTAATTATAATTTG
Found at i:91871538 original size:3 final size:3
Alignment explanation
Indices: 91871530--91871579 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
91871520 ACATATGGAG
* * *
91871530 TAA TAA TAA TAA TAA TAA CAA TAA TAA TGA TAA TAA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
91871578 TA
1 TA
91871580 GTCATCGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:91874473 original size:36 final size:36
Alignment explanation
Indices: 91874421--91874492 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
91874411 TATGATTGTA
91874421 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
* * * *
91874457 GATGTTCAAATTCAAACTGCGGATTTATTGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
91874493 ATAATAGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (36 bp):
GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
Found at i:91875181 original size:79 final size:79
Alignment explanation
Indices: 91875010--91875167 Score: 246
Period size: 78 Copynumber: 2.0 Consensus size: 79
91875000 TAGATTCTAG
* * * * *
91875010 AGTTAAAATTGATATTGTATTTATATCATATCTCTATATCATAATCAAGTTTAATATAAAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
91875075 TTCATGTTTTTATT
66 TTCATGTTTTTATT
* *
91875089 AGTTAAAATTGATATCGTATTTAAATTACATATC-ATATCATAATCAAGTTTAACATATAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
91875153 TTCATGTTTTTATT
66 TTCATGTTTTTATT
91875167 A
1 A
91875168 TATAAATTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 43 0.60
79 29 0.40
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (79 bp):
AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
TTCATGTTTTTATT
Found at i:91886779 original size:93 final size:93
Alignment explanation
Indices: 91886667--91886838 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91886657 GCCCATAAGT
* *
91886667 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91886732 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
91886760 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91886825 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
91886839 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91886834 original size:46 final size:46
Alignment explanation
Indices: 91886659--91886834 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
91886649 TGTAACCCGC
* * *
91886659 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
91886705 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
91886755 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
91886798 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91886835 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:91899501 original size:29 final size:28
Alignment explanation
Indices: 91899459--91899540 Score: 89
Period size: 29 Copynumber: 2.9 Consensus size: 28
91899449 ACGCTCCATC
91899459 ATATA-TATA-TATTATATTATTTTAAT
1 ATATATTATATTATTATATTATTTTAAT
* * *
91899485 ATATATTTTATTCATTATATCATTTTCATT
1 ATATATTATATT-ATTATATTATTTT-AAT
91899515 ATATATTATATTA-TATTATTATTTTA
1 ATATATTATATTATTA-TATTATTTTA
91899541 TTTATTACTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
26 5 0.11
27 3 0.07
28 4 0.09
29 21 0.46
30 13 0.28
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (28 bp):
ATATATTATATTATTATATTATTTTAAT
Found at i:91899512 original size:14 final size:13
Alignment explanation
Indices: 91899469--91899530 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
91899459 ATATATATAT
*
91899469 ATTATATTATTTTA
1 ATTATA-TATTTTC
*
91899483 ATATATATTTTATTC
1 AT-TATATATT-TTC
91899498 ATTATATCATTTTC
1 ATTATAT-ATTTTC
*
91899512 ATTATATATTAT-
1 ATTATATATTTTC
91899524 ATTATAT
1 ATTATAT
91899531 TATTATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 7 0.17
13 4 0.10
14 20 0.49
15 10 0.24
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTATATATTTTC
Found at i:91899520 original size:30 final size:29
Alignment explanation
Indices: 91899469--91899526 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
91899459 ATATATATAT
* *
91899469 ATTATATTATTTTAATATATATTTTATTC
1 ATTATATCATTTTAATATATATTATATTC
*
91899498 ATTATATCATTTTCATTATATATTATATT
1 ATTATATCATTTT-AATATATATTATATT
91899527 ATATTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTATATCATTTTAATATATATTATATTC
Found at i:91901656 original size:96 final size:96
Alignment explanation
Indices: 91901528--91901717 Score: 362
Period size: 96 Copynumber: 2.0 Consensus size: 96
91901518 TCAAGATGGC
* *
91901528 TAAGTATCTGTTTTGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAG
1 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAA
91901593 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
66 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
91901624 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAA
1 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAA
91901689 AGGTAGACTTAGTACCTACTTTGGAGGAG
66 AGGTAGACTTAGTACCTACTTTGGAGGAG
91901718 TATACGACCT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.38
Consensus pattern (96 bp):
TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAA
AGGTAGACTTAGTACCTACTTTGGAGGAGGA
Found at i:91911740 original size:44 final size:44
Alignment explanation
Indices: 91911687--91912036 Score: 524
Period size: 44 Copynumber: 8.0 Consensus size: 44
91911677 TCACCGATAG
* *
91911687 CAGATTTGGCATCTCTGAATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
91911731 CAAATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
91911775 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
91911819 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * * *
91911863 CAAATTTGGCATATCTGTACTGACAGAGAGCAGATCAAAGAT-A
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* *
91911906 GCAGATTTGGCGTCTCTGTATTGACAGTGAGCAGATCAAAGATGA
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * ** *
91911951 TAGATTTGGCGTTTCTGTATTGTTAGAGAGAAGATCGAAGAT-A
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
91911994 GCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT
91912037 AGCAGATCTG
Statistics
Matches: 276, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
43 2 0.01
44 273 0.99
45 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
Found at i:91913741 original size:5 final size:5
Alignment explanation
Indices: 91913725--91913820 Score: 60
Period size: 5 Copynumber: 19.4 Consensus size: 5
91913715 CGCTTTATCA
* * * *
91913725 TATAT ATATAT TATAT TATTT TA-AT ATATAT TTTAT T-CAT TATAT TATTT
1 TATAT -TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT
*
91913775 TCAT-T ATATAT TATA- T-TAT TATAT TATAT TATTAT TTTAT T-TAT
1 T-ATAT -TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT TATAT
91913819 TA
1 TA
91913821 CTATGTACAA
Statistics
Matches: 73, Mismatches: 7, Indels: 21
0.72 0.07 0.21
Matches are distributed among these distances:
3 2 0.03
4 10 0.14
5 46 0.63
6 15 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:91913769 original size:34 final size:33
Alignment explanation
Indices: 91913731--91913807 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 33
91913721 ATCATATATA
*
91913731 TATATTATATTATTTTAATATATA-T-T-TTAT
1 TATATTATATTATTTCAATATATATTATATTAT
* *
91913761 T-CATTATATTATTTTCATTATATATTATATTAT
1 TATATTATATTA-TTTCAATATATATTATATTAT
91913794 TATATTATATTATT
1 TATATTATATTATT
91913808 ATTTTATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
29 9 0.24
30 11 0.29
31 1 0.03
32 1 0.03
33 7 0.18
34 9 0.24
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (33 bp):
TATATTATATTATTTCAATATATATTATATTAT
Found at i:91913815 original size:29 final size:28
Alignment explanation
Indices: 91913718--91913820 Score: 117
Period size: 29 Copynumber: 3.8 Consensus size: 28
91913708 ATTTATACGC
*
91913718 TTTATCATATA-TATA-TATTATATTAT
1 TTTATTATATATTATATTATTATATTAT
* *
91913744 TTTAATATATATTTTATTCATTATATTAT
1 TTTATTATATATTATATT-ATTATATTAT
91913773 TTTCATTATATATTATATTATTATATTAT
1 TTT-ATTATATATTATATTATTATATTAT
*
91913802 ATTATTAT-T-TTAT-TTATTA
1 TTTATTATATATTATATTATTA
91913821 CTATGTACAA
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
25 6 0.09
26 13 0.19
27 4 0.06
28 6 0.09
29 25 0.37
30 13 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTATTATATATTATATTATTATATTAT
Found at i:91916409 original size:22 final size:21
Alignment explanation
Indices: 91916379--91916425 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
91916369 TACAAATTAA
91916379 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
91916401 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
91916422 ATCT
1 ATCT
91916426 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:91916431 original size:19 final size:19
Alignment explanation
Indices: 91916396--91916474 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
91916386 AGATTACAAG
91916396 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
91916417 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
91916434 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91916453 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91916472 ATC
1 ATC
91916475 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:91916449 original size:36 final size:38
Alignment explanation
Indices: 91916396--91916468 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
91916386 AGATTACAAG
91916396 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
91916434 ATCATAT-TT-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
91916469 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 2 0.06
38 7 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:91916483 original size:36 final size:35
Alignment explanation
Indices: 91916398--91916484 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 35
91916388 ATTACAAGAT
*
91916398 CATATCTTCAAGATTGCATATCATATCTAAGATTG
1 CATATCTTAAAGATTGCATATCATATCTAAGATTG
* * *
91916433 TATCATATTTAAGATTGCATATCATATCTAAGATTG
1 CAT-ATCTTAAAGATTGCATATCATATCTAAGATTG
91916469 CATATCCTTAAAGATT
1 CATAT-CTTAAAGATT
91916485 ATATTTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
35 4 0.09
36 40 0.91
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (35 bp):
CATATCTTAAAGATTGCATATCATATCTAAGATTG
Found at i:91917362 original size:84 final size:84
Alignment explanation
Indices: 91917216--91917743 Score: 777
Period size: 84 Copynumber: 6.3 Consensus size: 84
91917206 ATCATCTTGG
* * *
91917216 ACCCTACTGCTTA-GGGAGTTAAGGTGCATCGTCTTCAATCTGCT-CACTACTGCTTA-AG-GAT
1 ACCCTACTGCTTAGGGGA-TTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
*
91917277 AAGATCTGTAAATTTAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
* *
91917300 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
91917365 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
91917384 ACCCTACTGCTTATGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
91917449 ATATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
91917466 ACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
91917531 TATGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
91917550 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
91917615 TATACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
91917634 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
91917699 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
91917718 ACCCTACTGCTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
91917744 CTGAATGTTG
Statistics
Matches: 404, Mismatches: 28, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
79 36 0.09
81 14 0.03
82 47 0.12
83 1 0.00
84 266 0.66
85 5 0.01
87 35 0.09
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:91918713 original size:13 final size:12
Alignment explanation
Indices: 91918691--91918736 Score: 56
Period size: 13 Copynumber: 3.6 Consensus size: 12
91918681 GGCCTCTCCA
91918691 TTTTTCTTTTTTC
1 TTTTT-TTTTTTC
91918704 TTTTTATTTTTTC
1 TTTTT-TTTTTTC
*
91918717 TCTTTTTCTTTTC
1 T-TTTTTTTTTTC
91918730 TTTTTTT
1 TTTTTTT
91918737 CCTTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 5 0.17
13 20 0.69
14 4 0.14
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:91918716 original size:20 final size:20
Alignment explanation
Indices: 91918691--91918744 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
91918681 GGCCTCTCCA
91918691 TTTTTCTTTTTTCTTTT-TAT
1 TTTTTCTTTTTTCTTTTCT-T
91918711 TTTTTCTCTTTTTCTTTTCTT
1 TTTTTCT-TTTTTCTTTTCTT
91918732 TTTTTCCTTTTTT
1 TTTTT-CTTTTTT
91918745 TTGAAATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.23
21 21 0.68
22 3 0.10
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTCTTTTTTCTTTTCTT
Found at i:91918737 original size:13 final size:13
Alignment explanation
Indices: 91918699--91918746 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
91918689 CATTTTTCTT
91918699 TTTTCTTTTTATT-
1 TTTTCTTTTT-TTC
*
91918712 TTTTCTCTTTTTC
1 TTTTCTTTTTTTC
91918725 TTTTCTTTTTTTCC
1 TTTTCTTTTTTT-C
91918739 TTTT-TTTT
1 TTTTCTTTT
91918747 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 2 0.06
13 24 0.77
14 5 0.16
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:91920530 original size:12 final size:12
Alignment explanation
Indices: 91920513--91920539 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
91920503 TTGTTTTGTC
91920513 TCCTCAGCTAAT
1 TCCTCAGCTAAT
91920525 TCCTCAGCTAAT
1 TCCTCAGCTAAT
91920537 TCC
1 TCC
91920540 AATTTCGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.07, T:0.33
Consensus pattern (12 bp):
TCCTCAGCTAAT
Found at i:91924364 original size:22 final size:21
Alignment explanation
Indices: 91924334--91924399 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
91924324 TACAAATTAA
91924334 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
91924356 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
91924377 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
91924396 ATCT
1 ATCT
91924400 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:91924386 original size:19 final size:19
Alignment explanation
Indices: 91924351--91924448 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
91924341 AGATTACAAG
91924351 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
91924372 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91924391 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
91924408 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91924427 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
91924446 ATC
1 ATC
91924449 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:91924415 original size:36 final size:37
Alignment explanation
Indices: 91924351--91924448 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
91924341 AGATTACAAG
91924351 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
91924391 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
91924427 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
91924449 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:91930039 original size:43 final size:43
Alignment explanation
Indices: 91929935--91930100 Score: 133
Period size: 43 Copynumber: 3.9 Consensus size: 43
91929925 CAAAATTTCG
* *
91929935 CAAACTCCACTATAGAACATGACCTTTAGCGG--CGTTT-CTCA
1 CAAACACCACTATAGAACATGACCTTTAGCGGCACTTTTAC-CA
* * *
91929976 CAAAAATGCCACTATGGAACATGACCTTTAGTGGCACTTTTACCA
1 CAAACA--CCACTATAGAACATGACCTTTAGCGGCACTTTTACCA
* * * **
91930021 CAAACACCGCTATAGAACATGAACTTTAGCGGCGC-TTTAAGA
1 CAAACACCACTATAGAACATGACCTTTAGCGGCACTTTTACCA
* * * * * *
91930063 AAAACGCCGCTAAAGAACAAGACTTTTAGCGGCACTTT
1 CAAACACCACTATAGAACATGACCTTTAGCGGCACTTT
91930101 AAGAAAAACG
Statistics
Matches: 99, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
41 4 0.04
42 33 0.33
43 50 0.51
45 11 0.11
46 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
CAAACACCACTATAGAACATGACCTTTAGCGGCACTTTTACCA
Found at i:91930091 original size:42 final size:42
Alignment explanation
Indices: 91930022--91930162 Score: 194
Period size: 42 Copynumber: 3.3 Consensus size: 42
91930012 CTTTTACCAC
* * *
91930022 AAACACCGCTATAGAACATGAAC-TTTAGCGGCGCTTTAAGAA
1 AAACGCCGCTAAAGAACAAG-ACTTTTAGCGGCGCTTTAAGAA
*
91930064 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCACTTTAAGAA
1 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCGCTTTAAGAA
* * *
91930106 AAACGCTGCTAAAGAATAAGACTTTTAGCGGCGCTTTAGTGAA
1 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCGCTTTA-AGAA
91930149 AAACGCCGCTAAAG
1 AAACGCCGCTAAAG
91930163 GTTACGTTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
41 2 0.02
42 70 0.80
43 16 0.18
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACAAGACTTTTAGCGGCGCTTTAAGAA
Found at i:91930331 original size:19 final size:18
Alignment explanation
Indices: 91930309--91930355 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
91930299 CAAAAACAGT
* *
91930309 AAATACAAAGTCATCCAG
1 AAATACAAAGCCAACCAG
91930327 CAAATACAAAGCCAACCAG
1 -AAATACAAAGCCAACCAG
91930346 AAATAGCAAA
1 AAATA-CAAA
91930356 TATAAATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.55, C:0.23, G:0.11, T:0.11
Consensus pattern (18 bp):
AAATACAAAGCCAACCAG
Found at i:91938910 original size:9 final size:9
Alignment explanation
Indices: 91938898--91939071 Score: 169
Period size: 9 Copynumber: 19.6 Consensus size: 9
91938888 TGATATATAT
91938898 TTATGTAAG
1 TTATGTAAG
*
91938907 TTATGTAAA
1 TTATGTAAG
*
91938916 TTACGTAAG
1 TTATGTAAG
91938925 TTATGTAAG
1 TTATGTAAG
91938934 TTATG-ATA-
1 TTATGTA-AG
* * *
91938942 TGATGTTTAT
1 TTATG-TAAG
91938952 TTATGTAAG
1 TTATGTAAG
*
91938961 TTATGTAAA
1 TTATGTAAG
*
91938970 TTATGCAAG
1 TTATGTAAG
91938979 TTATGTAAG
1 TTATGTAAG
*
91938988 TTATGTAAA
1 TTATGTAAG
*
91938997 TTATGTGAG
1 TTATGTAAG
91939006 TTATGTAAG
1 TTATGTAAG
91939015 TTATGTAAG
1 TTATGTAAG
*
91939024 TTATGATATG
1 TTATG-TAAG
* * *
91939034 GTAT-TTAT
1 TTATGTAAG
91939042 TTATGT-A-
1 TTATGTAAG
91939049 TTATGTAAG
1 TTATGTAAG
91939058 TTATGTAAG
1 TTATGTAAG
91939067 TTATG
1 TTATG
91939072 ATTAGCATCT
Statistics
Matches: 134, Mismatches: 23, Indels: 16
0.77 0.13 0.09
Matches are distributed among these distances:
7 6 0.04
8 11 0.08
9 107 0.80
10 10 0.07
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:91938925 original size:18 final size:18
Alignment explanation
Indices: 91938871--91939071 Score: 171
Period size: 18 Copynumber: 11.3 Consensus size: 18
91938861 TGGCAATAAA
*
91938871 TTATGTAAGTTATGATATG
1 TTATGTAAGTTATG-TAAG
* * *
91938890 ATATAT-ATTTATGTAAG
1 TTATGTAAGTTATGTAAG
* *
91938907 TTATGTAAATTACGTAAG
1 TTATGTAAGTTATGTAAG
91938925 TTATGTAAGTTATG-ATA-
1 TTATGTAAGTTATGTA-AG
* * *
91938942 TGATGTTTATTTATGTAAG
1 TTATG-TAAGTTATGTAAG
* *
91938961 TTATGTAAATTATGCAAG
1 TTATGTAAGTTATGTAAG
*
91938979 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGTAAG
*
91938997 TTATGTGAGTTATGTAAG
1 TTATGTAAGTTATGTAAG
*
91939015 TTATGTAAGTTATGATATG
1 TTATGTAAGTTATG-TAAG
* * *
91939034 GTAT-TTATTTATGT-A-
1 TTATGTAAGTTATGTAAG
91939049 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAG
91939067 TTATG
1 TTATG
91939072 ATTAGCATCT
Statistics
Matches: 142, Mismatches: 31, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
15 3 0.02
16 8 0.06
17 14 0.10
18 102 0.72
19 15 0.11
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATGTAAG
Found at i:91939020 original size:27 final size:27
Alignment explanation
Indices: 91938871--91939071 Score: 196
Period size: 27 Copynumber: 7.5 Consensus size: 27
91938861 TGGCAATAAA
* * * *
91938871 TTATGTAAGTTATG-ATATGATATATAT
1 TTATGTAAGTTATGTAAATTATGTA-AG
*
91938898 TTATGTAAGTTATGTAAATTACGTAAG
1 TTATGTAAGTTATGTAAATTATGTAAG
* * * *
91938925 TTATGTAAGTTATG-ATATGATGTTTAT
1 TTATGTAAGTTATGTAAATTATG-TAAG
*
91938952 TTATGTAAGTTATGTAAATTATGCAAG
1 TTATGTAAGTTATGTAAATTATGTAAG
*
91938979 TTATGTAAGTTATGTAAATTATGTGAG
1 TTATGTAAGTTATGTAAATTATGTAAG
* *
91939006 TTATGTAAGTTATGTAAGTTATGATATG
1 TTATGTAAGTTATGTAAATTATG-TAAG
* * *
91939034 GTAT-TTATTTATGT--ATTATGTAAG
1 TTATGTAAGTTATGTAAATTATGTAAG
91939058 TTATGTAAGTTATG
1 TTATGTAAGTTATG
91939072 ATTAGCATCT
Statistics
Matches: 141, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
24 6 0.04
25 12 0.09
26 5 0.04
27 101 0.72
28 17 0.12
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATGTAAATTATGTAAG
Found at i:91939575 original size:26 final size:26
Alignment explanation
Indices: 91939540--91939591 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
91939530 ATTATAGAGA
*
91939540 AAAAAAATTGCAGATAGCTTTAGTAC
1 AAAAAAATTGCAAATAGCTTTAGTAC
91939566 AAAAAAATTGCAAATAGCTTTAGTAC
1 AAAAAAATTGCAAATAGCTTTAGTAC
91939592 CTTTAATATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (26 bp):
AAAAAAATTGCAAATAGCTTTAGTAC
Found at i:91941887 original size:21 final size:23
Alignment explanation
Indices: 91941852--91941898 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
91941842 TTTTAGGAAC
91941852 ACCATAAAACCCTAAACCATA-A
1 ACCATAAAACCCTAAACCATATA
*
91941874 ACCAT-AACCCCTAAACCATATA
1 ACCATAAAACCCTAAACCATATA
91941896 ACC
1 ACC
91941899 CTAGCCCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (23 bp):
ACCATAAAACCCTAAACCATATA
Found at i:91941912 original size:50 final size:49
Alignment explanation
Indices: 91941856--91941950 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 49
91941846 AGGAACACCA
* * *
91941856 TAAAACCCTAAACCATAAACCATAACCCCTAAACCATATAACCCTAGCCC
1 TAAAACCCTAAACCATAAACCACAAACCCTAAACCA-AAAACCCTAGCCC
* *
91941906 TAAAACCCTAAATCATAAACCACAAATCCTAAACCAAAAACCCTA
1 TAAAACCCTAAACCATAAACCACAAACCCTAAACCAAAAACCCTA
91941951 AATTATATAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 8 0.20
50 32 0.80
ACGTcount: A:0.48, C:0.35, G:0.01, T:0.16
Consensus pattern (49 bp):
TAAAACCCTAAACCATAAACCACAAACCCTAAACCAAAAACCCTAGCCC
Found at i:91941953 original size:21 final size:21
Alignment explanation
Indices: 91941852--91941952 Score: 64
Period size: 21 Copynumber: 4.7 Consensus size: 21
91941842 TTTTAGGAAC
91941852 ACCATAAAACCCTAAACCATAA
1 ACCA-AAAACCCTAAACCATAA
* *
91941874 ACCATAACCCCTAAACCATATA
1 ACCAAAAACCCTAAACCATA-A
** * *
91941896 ACC-CTAGCCCTAAAACCCTAA
1 ACCAAAAACCCT-AAACCATAA
* *
91941917 ATCATAAACCAC-AAATCC-TAA
1 ACCAAAAACC-CTAAA-CCATAA
91941938 ACCAAAAACCCTAAA
1 ACCAAAAACCCTAAA
91941953 TTATATAGCC
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
20 1 0.02
21 39 0.64
22 20 0.33
23 1 0.02
ACGTcount: A:0.50, C:0.35, G:0.01, T:0.15
Consensus pattern (21 bp):
ACCAAAAACCCTAAACCATAA
Found at i:91942038 original size:21 final size:20
Alignment explanation
Indices: 91942014--91942060 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
91942004 AACACGAAAT
*
91942014 CTTAAACCCTAAACCATAACC
1 CTTAAACCATAAACCATAA-C
* *
91942035 CTTAAACCATATACCCTAAC
1 CTTAAACCATAAACCATAAC
91942055 CTTAAA
1 CTTAAA
91942061 ACCACAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (20 bp):
CTTAAACCATAAACCATAAC
Found at i:91942142 original size:23 final size:21
Alignment explanation
Indices: 91942116--91942164 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 21
91942106 CATGAAACCA
91942116 TAAATCAC-AAACCTTATAATCAC
1 TAAA-CACGAAACCTTA-AA-CAC
91942139 TAAACACGAAACCTTAAACAC
1 TAAACACGAAACCTTAAACAC
91942160 TAAAC
1 TAAAC
91942165 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.32
22 5 0.20
23 12 0.48
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAACACGAAACCTTAAACAC
Found at i:91942177 original size:137 final size:137
Alignment explanation
Indices: 91941922--91942182 Score: 396
Period size: 137 Copynumber: 1.9 Consensus size: 137
91941912 CCTAAATCAT
* **
91941922 AAACCACAAATCCTAAACCAAAAACCCTAAATTATATAGCCACTAAACATGAAACCATAAATCTT
1 AAACCACAAATCCTAAACCAAAAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCAC
* * * **
91941987 AAATCTTATAATCACTAAACACGAAATCTTAAACCCTAAACCATAACCCTTAAACCATATACCCT
66 AAACCTTATAATCACTAAACACGAAACCTTAAACACTAAACCATAAAACTTAAACCATATACCCT
91942052 AACCTTA
131 AACCTTA
* * *
91942059 AAACCACAAATCTTAAACCACAAACCCTAAACTATATAGCTACTAAACATGAAACCATAAATCAC
1 AAACCACAAATCCTAAACCAAAAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCAC
** *
91942124 AAACCTTATAATCACTAAACACGAAACCTTAAACACTAAACTTTAAAATTTAAACCATA
66 AAACCTTATAATCACTAAACACGAAACCTTAAACACTAAACCATAAAACTTAAACCATA
91942183 AATACTAAAC
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
137 110 1.00
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.22
Consensus pattern (137 bp):
AAACCACAAATCCTAAACCAAAAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCAC
AAACCTTATAATCACTAAACACGAAACCTTAAACACTAAACCATAAAACTTAAACCATATACCCT
AACCTTA
Found at i:91942487 original size:84 final size:84
Alignment explanation
Indices: 91942380--91942822 Score: 392
Period size: 83 Copynumber: 5.3 Consensus size: 84
91942370 TAGTCTTTTA
* ** *
91942380 AGGCAAA-TGGTATTGCAACTTTGCGGCATTTTTTAAAAACACCACTAAAATTTTAATGCTTTGT
1 AGGCAAATTGGTATTGCAAATTTGCGGCATTTTTTAAAAATGCCACTAAAAATTTAATGCTTTGT
* *
91942444 AATGAAACAACACCGTTGG
66 AATGAAACGACACCGTTTG
* * * * * * **
91942463 AGACAAATTAGTATTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAAAATTTAATTCCCTGT
1 AGGCAAATTGGTATTGCAAATTTGCGGCATTTTTTAAAAATGCCACTAAAAATTTAATGCTTTGT
** *** *
91942528 TGTGAAACGATGGCGTTTA
66 AATGAAACGACACCGTTTG
* * *
91942547 AGGCAAA-TGGTATTGCAACTTTGCGGCATTTCTTAAAAATGCCACTAAAATTTTAATGCTTTGT
1 AGGCAAATTGGTATTGCAAATTTGCGGCATTTTTTAAAAATGCCACTAAAAATTTAATGCTTTGT
* * *
91942611 AATGAAACGACGCCATTGG
66 AATGAAACGACACCGTTTG
* * * * * * * * * **
91942630 AGTCGAATTGGTATGGCAAATTTGCAGC-TTTTGTGAAAAACGCAACTAAAAATTTAGTTCCCTG
1 AGGCAAATTGGTATTGCAAATTTGCGGCATTTT-TTAAAAATGCCACTAAAAATTTAATGCTTTG
** * *
91942694 TTGTGAAACGAC-TCGTTTA
65 TAATGAAACGACACCGTTTG
* * * *
91942713 AGGCAAA-TGGTTATTGCAATTTTGCGGCGTTTTTTAAAAATGTCACTAAAAGTTTAATGCTTTG
1 AGGCAAATTGG-TATTGCAAATTTGCGGCATTTTTTAAAAATGCCACTAAAAATTTAATGCTTTG
91942777 TAATGAAACGACACCGTTTG
65 TAATGAAACGACACCGTTTG
* **
91942797 AGTCAAATTTATTATTGCAAATTTGC
1 AGGCAAA-TTGGTATTGCAAATTTGC
91942823 AGTTGTGTGG
Statistics
Matches: 273, Mismatches: 79, Indels: 14
0.75 0.22 0.04
Matches are distributed among these distances:
82 3 0.01
83 128 0.47
84 128 0.47
85 13 0.05
86 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (84 bp):
AGGCAAATTGGTATTGCAAATTTGCGGCATTTTTTAAAAATGCCACTAAAAATTTAATGCTTTGT
AATGAAACGACACCGTTTG
Found at i:91942589 original size:83 final size:83
Alignment explanation
Indices: 91942376--91942822 Score: 365
Period size: 84 Copynumber: 5.3 Consensus size: 83
91942366 AACGTAGTCT
* * ** * **
91942376 TTTAAGGCAAATGGTATTGCAACTTTGCGGCATTTTTTAAAAACACCACTAAAATTTTAATGCTT
1 TTTAAGGCAAATGGTATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCCC
* *
91942441 TGTAATGAAACAACACCG
66 TGTAATGAAACGACGCCG
** * * * * *
91942459 TTGGAGACAAATTAGTATTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAAAATTTAATTCC
1 TTTAAGGCAAA-TGGTATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCC
** * *
91942524 CTGTTGTGAAACGATGGCG
65 CTGTAATGAAACGACGCCG
* * * **
91942543 TTTAAGGCAAATGGTATTGCAACTTTGCGGCATTTCTTAAAAATGCCACTAAAATTTTAATGCTT
1 TTTAAGGCAAATGGTATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCCC
*
91942608 TGTAATGAAACGACGCCA
66 TGTAATGAAACGACGCCG
** * * * * * * * * * *
91942626 TTGGAGTCGAATTGGTATGGCAAATTTGCAGCTTTTGTGAAAAACGCAACTAAAAATTTAGTTCC
1 TTTAAGGC-AAATGGTATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCC
** *
91942691 CTGTTGTGAAACGAC-TCG
65 CTGTAATGAAACGACGCCG
* * * * * *
91942709 TTTAAGGCAAATGGTTATTGCAATTTTGCGGCGTTTTTTAAAAATGTCACTAAAAGTTTAATGCT
1 TTTAAGGCAAATGG-TATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCC
* *
91942774 TTGTAATGAAACGACACCG
65 CTGTAATGAAACGACGCCG
* * **
91942793 TTTGAGTCAAATTTATTATTGCAAATTTGC
1 TTTAAGGCAAA--TGGTATTGCAAATTTGC
91942823 AGTTGTGTGG
Statistics
Matches: 274, Mismatches: 84, Indels: 10
0.74 0.23 0.03
Matches are distributed among these distances:
82 5 0.02
83 126 0.46
84 129 0.47
85 13 0.05
86 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (83 bp):
TTTAAGGCAAATGGTATTGCAAATTTGCGGCATTTGTTAAAAATGCCACTAAAAATTTAATGCCC
TGTAATGAAACGACGCCG
Found at i:91942651 original size:167 final size:166
Alignment explanation
Indices: 91942346--91942824 Score: 645
Period size: 167 Copynumber: 2.9 Consensus size: 166
91942336 TTTAGGGAAG
* * * * *
91942346 AATTTTATTCCTTGTTCTGAAACGTAGTCTTTTAAGGCAAATGGTATTGCAACTTTGCGGCATTT
1 AATTTAATTCCCTGTTGTGAAACG-ACTCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCATTT
** * *
91942411 TTTAAAAACACCACTAAAATTTTAATGCTTTGTAATGAAACAACACCGTTGGAGACAAATTAGTA
65 TTTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACACCATTGGAGACAAATTAGTA
* * * *
91942476 TTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAA
130 TGGCAAATTTGCAGCGTTTGTGAAAAACGCAACTAAA
91942513 AATTTAATTCCCTGTTGTGAAACGA-TGGCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCATT
1 AATTTAATTCCCTGTTGTGAAACGACT--CGTTTAAGGCAAATGGTATTGCAACTTTGCGGCATT
* * * * *
91942577 TCTTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCATTGGAGTCGAATTGGT
64 TTTTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACACCATTGGAGACAAATTAGT
*
91942642 ATGGCAAATTTGCAGCTTTTGTGAAAAACGCAACTAAA
129 ATGGCAAATTTGCAGCGTTTGTGAAAAACGCAACTAAA
* * *
91942680 AATTTAGTTCCCTGTTGTGAAACGACTCGTTTAAGGCAAATGGTTATTGCAATTTTGCGGCGTTT
1 AATTTAATTCCCTGTTGTGAAACGACTCGTTTAAGGCAAATGG-TATTGCAACTTTGCGGCATTT
* * * * * *
91942745 TTTAAAAATGTCACTAAAAGTTTAATGCTTTGTAATGAAACGACACCGTTTGAGTCAAATTTATT
65 TTTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACACCATTGGAGACAAA-TTAGT
*
91942810 ATTGCAAATTTGCAG
129 ATGGCAAATTTGCAG
91942825 TTGTGTGGGA
Statistics
Matches: 276, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
165 1 0.00
166 17 0.06
167 240 0.87
168 18 0.07
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (166 bp):
AATTTAATTCCCTGTTGTGAAACGACTCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCATTTT
TTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACACCATTGGAGACAAATTAGTAT
GGCAAATTTGCAGCGTTTGTGAAAAACGCAACTAAA
Found at i:91945866 original size:20 final size:18
Alignment explanation
Indices: 91945827--91945871 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
91945817 AACAAGGCAA
91945827 TAACT-ATAGAAGATAAC
1 TAACTAATAGAAGATAAC
91945844 TAACTAATAGAAGAATGAAC
1 TAACTAATAGAAG-AT-AAC
*
91945864 TAATTAAT
1 TAACTAAT
91945872 TGGAAGTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 7 0.29
19 2 0.08
20 10 0.42
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (18 bp):
TAACTAATAGAAGATAAC
Found at i:91952499 original size:20 final size:20
Alignment explanation
Indices: 91952474--91952523 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
91952464 AAAGATATAA
91952474 ATTTTGGAATTTTT-ATAAA-T
1 ATTTT-GAATTTTTGA-AAATT
91952494 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
91952514 ATTTTGAATT
1 ATTTTGAATT
91952524 GTTTTGTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:91952504 original size:19 final size:19
Alignment explanation
Indices: 91952469--91952523 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
91952459 TTTCTAAAGA
*
91952469 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
91952487 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
91952506 TGA-AAATTATTTTGAATT
1 T-ATAAA-TATTTTGAATT
91952524 GTTTTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 7 0.21
19 14 0.42
20 12 0.36
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:91954718 original size:23 final size:22
Alignment explanation
Indices: 91954679--91954724 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
91954669 GCTTATATCC
*
91954679 AAACCAAAACATACCAAATCAT
1 AAACCAAAACATACCAAAACAT
*
91954701 AAACCAAAGTCATACCAAAACAT
1 AAACCAAA-ACATACCAAAACAT
91954724 A
1 A
91954725 TGATTCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.59, C:0.26, G:0.02, T:0.13
Consensus pattern (22 bp):
AAACCAAAACATACCAAAACAT
Found at i:91958916 original size:18 final size:18
Alignment explanation
Indices: 91958895--91958953 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
91958885 TAACATTCAA
*
91958895 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* *
91958913 TTATTCAGTAACAATCAT
1 TTATTCAGTAGCAATCAG
**
91958931 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
91958949 TTATT
1 TTATT
91958954 AAAAACGATC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:91959992 original size:18 final size:17
Alignment explanation
Indices: 91959945--91959992 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
91959935 TTCTTTCCTT
* *
91959945 CTTTTCTTTTCTGTTTT
1 CTTTTCATTTCTGTTTC
*
91959962 CGTTTCATATTCTGTTTC
1 CTTTTCAT-TTCTGTTTC
91959980 CTTTTTCATTTCT
1 C-TTTTCATTTCT
91959993 TTTATTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 6 0.24
18 13 0.52
19 6 0.24
ACGTcount: A:0.06, C:0.21, G:0.06, T:0.67
Consensus pattern (17 bp):
CTTTTCATTTCTGTTTC
Found at i:91960162 original size:24 final size:21
Alignment explanation
Indices: 91960135--91960207 Score: 58
Period size: 27 Copynumber: 3.2 Consensus size: 21
91960125 AGATTTATTC
91960135 ATTATATAAATATCTTGTAATATA
1 ATTATATAAATATCTT-T--TATA
91960159 ATTAATTAATAAATATCTTTTATA
1 ATT-A-T-ATAAATATCTTTTATA
* *
91960183 AATA-ATAAATATCTATTAATA
1 ATTATATAAATATCT-TTTATA
91960204 ATTA
1 ATTA
91960208 AATACATGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
20 10 0.24
21 8 0.19
23 1 0.02
24 9 0.21
25 1 0.02
26 2 0.05
27 11 0.26
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (21 bp):
ATTATATAAATATCTTTTATA
Found at i:91960447 original size:16 final size:17
Alignment explanation
Indices: 91960426--91960469 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
91960416 ATTTATTTCA
*
91960426 TAATAAAATATCAA-TT
1 TAATAAAATATCAACAT
91960442 TAATAAAA-AT-AACAT
1 TAATAAAATATCAACAT
91960457 TAAT-AAATATCAA
1 TAATAAAATATCAA
91960470 ATATAAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (17 bp):
TAATAAAATATCAACAT
Found at i:91960488 original size:3 final size:3
Alignment explanation
Indices: 91960480--91960526 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
91960470 ATATAAAACC
91960480 ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91960527 TACATATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:91960495 original size:20 final size:20
Alignment explanation
Indices: 91960472--91960526 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
91960462 AATATCAAAT
*
91960472 ATAAAACCATAATAATAATA
1 ATAAAACAATAATAATAATA
*
91960492 ATAAAATAATAATAATAATA
1 ATAAAACAATAATAATAATA
*
91960512 ATAATAATAATAATA
1 ATAA-AACAATAATA
91960527 TACATATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 22 0.69
21 10 0.31
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAACAATAATAATAATA
Found at i:91960694 original size:19 final size:21
Alignment explanation
Indices: 91960671--91960718 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
91960661 GTTTTTTTTT
*
91960671 TCTAATTACTCTTAATT-AAG
1 TCTAATTACACTTAATTAAAG
91960691 -CTAAATT-CACTTAATTAAAG
1 TCT-AATTACACTTAATTAAAG
91960711 TCTAATTA
1 TCTAATTA
91960719 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (21 bp):
TCTAATTACACTTAATTAAAG
Found at i:91965569 original size:23 final size:22
Alignment explanation
Indices: 91965529--91965574 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
91965519 GCTTATATCC
*
91965529 AAACCAAAACATACCAAATCAT
1 AAACCAAAACATACCAAAACAT
* *
91965551 AAACCAAAGTCATATCAAAACAT
1 AAACCAAA-ACATACCAAAACAT
91965574 A
1 A
91965575 TGATACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.59, C:0.24, G:0.02, T:0.15
Consensus pattern (22 bp):
AAACCAAAACATACCAAAACAT
Found at i:91971915 original size:35 final size:35
Alignment explanation
Indices: 91971869--91971938 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
91971859 ATGACATAAA
*
91971869 AGAAAATCAACGATTTTTGAAAATCGATTCACCAC
1 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
91971904 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
1 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
91971939 CACCACGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.24
Consensus pattern (35 bp):
AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
Found at i:91979464 original size:18 final size:18
Alignment explanation
Indices: 91979441--91979475 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
91979431 CCTTTAAATC
91979441 CAGGATTAGATTCTTTTG
1 CAGGATTAGATTCTTTTG
91979459 CAGGATTAGATTCTTTT
1 CAGGATTAGATTCTTTT
91979476 ATTAGCTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (18 bp):
CAGGATTAGATTCTTTTG
Found at i:91987357 original size:94 final size:92
Alignment explanation
Indices: 91987236--91987404 Score: 230
Period size: 94 Copynumber: 1.8 Consensus size: 92
91987226 AATTGTGTAC
**
91987236 TAGTGCAAGACATGTATGGGACATGCATCGGCCACATTACGGGAACCAGTGTAAGACCATGTCTG
1 TAGTGCAAGACATGTATGGGACATGCATCGGCCACAAAACGGG--CCAGTGTAAGACCATGTCTG
*
91987301 GGACATGGCATCGGCATTGAGACAAGAGT
64 GGACAGGGCATCGGCATTGAGACAAGAGT
* * * * * * *
91987330 TAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAAATGTGTCAGTGTAAGACCATGTTTGGG
1 TAGTGCAAGACATGTATGGGACATGCATCGGCCACAAAACGGGCCAGTGTAAGACCATGTCTGGG
91987395 ACAGGGCATC
66 ACAGGGCATC
91987405 AGCACAGATA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
92 29 0.45
94 36 0.55
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (92 bp):
TAGTGCAAGACATGTATGGGACATGCATCGGCCACAAAACGGGCCAGTGTAAGACCATGTCTGGG
ACAGGGCATCGGCATTGAGACAAGAGT
Found at i:91987429 original size:94 final size:93
Alignment explanation
Indices: 91987237--91987455 Score: 215
Period size: 94 Copynumber: 2.3 Consensus size: 93
91987227 ATTGTGTACT
* **
91987237 AGTGCAAGACATGTATGGGACATGCATCGGCCACATTACGGGAACCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGCATCGGCCACAAAACGGG-ACCAGTGTAAGACCATGTCTGG
* * ** *
91987302 GACATGGCATCGGCATTGAGACAAGAGTT
65 GACAGGGCATCAGCACAGAGACAAGAGTC
* * * * * *
91987331 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAAATGTG-TCAGTGTAAGACCATGTTTGGG
1 AGTGTAAGACATGTATGGGACATGCATCGGCCACAAAACGGGACCAGTGTAAGACCATGTCTGGG
* **
91987395 ACAGGGCATCAGCACAGATATGTGAGAGTC
66 ACAGGGCATCAGCACAGAGA--CAAGAGTC
* *
91987425 AGTGTAAGACCATGTTTGAGACATGACATCG
1 AGTGTAAGA-CATGTATGGGACATG-CATCG
91987456 ACATTATACC
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
92 35 0.34
94 49 0.48
95 13 0.13
96 5 0.05
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTATGGGACATGCATCGGCCACAAAACGGGACCAGTGTAAGACCATGTCTGGG
ACAGGGCATCAGCACAGAGACAAGAGTC
Found at i:91988959 original size:3 final size:3
Alignment explanation
Indices: 91988951--91988979 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
91988941 TCGTGTAATT
91988951 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
91988980 TTTGTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:91990659 original size:82 final size:82
Alignment explanation
Indices: 91990494--91990714 Score: 252
Period size: 83 Copynumber: 2.7 Consensus size: 82
91990484 GTTTATTATG
* * * * * **
91990494 TATTAATTTATAATTTTACCTTT-TTT-GAA-TGGACTAAATAGAAATTTTTTATTTTAGGGGGG
1 TATTAATTTATAATTTT--CTTTATTTACAAGAGGACTAAATTGAAAATTTTCATTTT-GAAGGG
* *
91990556 CTAAAGTGTAATTTTATTATA
63 -TAAAGTGTAATTTCACTATA
* *
91990577 TATTAATTTATAA-TTTCTTTATTTACAAGAGGATTGAATTGAAAACTTTTCATTTTGAAGGGTA
1 TATTAATTTATAATTTTCTTTATTTACAAGAGGACTAAATTGAAAA-TTTTCATTTTGAAGGGTA
91990641 AAGTGTAATTTCACTATA
65 AAGTGTAATTTCACTATA
* *
91990659 TATTAATTTATAATTTTTTTTATTTATAAGAGGACTAAATTGAAAATTTTCATTTT
1 TATTAATTTATAATTTTCTTTATTTACAAGAGGACTAAATTGAAAATTTTCATTTT
91990715 TTGGGAGGGC
Statistics
Matches: 118, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.03
81 3 0.03
82 46 0.39
83 56 0.47
84 9 0.08
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.48
Consensus pattern (82 bp):
TATTAATTTATAATTTTCTTTATTTACAAGAGGACTAAATTGAAAATTTTCATTTTGAAGGGTAA
AGTGTAATTTCACTATA
Found at i:91990926 original size:21 final size:21
Alignment explanation
Indices: 91990885--91990927 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
91990875 CGAACTTTTC
*
91990885 ATATTATTATATTATTAAAAT
1 ATATTATTATATTAATAAAAT
*
91990906 ATATTATTA-ATTTAATGAAAT
1 ATATTATTATA-TTAATAAAAT
91990927 A
1 A
91990928 GTATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATATTATTATATTAATAAAAT
Found at i:91992073 original size:28 final size:28
Alignment explanation
Indices: 91992033--91992090 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
91992023 GGAGTAATGA
91992033 TGAAGATTTGCAACACAAATTTGGTTGT
1 TGAAGATTTGCAACACAAATTTGGTTGT
91992061 TGAAGATTTGCAACACAAATTTGGTTGT
1 TGAAGATTTGCAACACAAATTTGGTTGT
91992089 TG
1 TG
91992091 TAATATAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (28 bp):
TGAAGATTTGCAACACAAATTTGGTTGT
Found at i:92001161 original size:21 final size:19
Alignment explanation
Indices: 92001116--92001157 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
92001106 TTCAATTCAA
*
92001116 TCTCAACTCTCTCTCATAT
1 TCTCAACTCTCTCTCAAAT
* *
92001135 TATCAATTCTCTCTCAAAT
1 TCTCAACTCTCTCTCAAAT
92001154 TCTC
1 TCTC
92001158 TCAAAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (19 bp):
TCTCAACTCTCTCTCAAAT
Found at i:92011976 original size:120 final size:120
Alignment explanation
Indices: 92011763--92012002 Score: 453
Period size: 120 Copynumber: 2.0 Consensus size: 120
92011753 TGGAAATAGA
* *
92011763 AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAGCATATTATTTTATGTCATCTTCTTCCC
1 AATAATTAAAAGATGATAAATAATTAAAAAAAAATTAACATATTATTTTATGTCATCTTCTTCCC
92011828 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
66 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
*
92011883 AATAATTAAAAGATGATAAATAATTAAAAAAAAATTAACATCTTATTTTATGTCATCTTCTTCCC
1 AATAATTAAAAGATGATAAATAATTAAAAAAAAATTAACATATTATTTTATGTCATCTTCTTCCC
92011948 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
66 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
92012003 TAAGTTTTCT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.33
Consensus pattern (120 bp):
AATAATTAAAAGATGATAAATAATTAAAAAAAAATTAACATATTATTTTATGTCATCTTCTTCCC
TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
Found at i:92012509 original size:90 final size:90
Alignment explanation
Indices: 92012411--92012587 Score: 336
Period size: 90 Copynumber: 2.0 Consensus size: 90
92012401 TTTACCTAGG
92012411 ATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATATAGAT
1 ATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATATAGAT
* *
92012476 CTGGATAACACAAATTTGAGGCAGA
66 CCGGATAACACAAATTCGAGGCAGA
92012501 ATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATATAGAT
1 ATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATATAGAT
92012566 CCGGATAACACAAATTCGAGGC
66 CCGGATAACACAAATTCGAGGC
92012588 TAGATCGAGG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (90 bp):
ATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATATAGAT
CCGGATAACACAAATTCGAGGCAGA
Found at i:92012715 original size:18 final size:18
Alignment explanation
Indices: 92012692--92012754 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
92012682 ATGTTAAATT
*
92012692 GAATGTTGTGTTTGTATG
1 GAATGTTGTGTTTGTATA
* *
92012710 GAATG-TGTTTTATGTTAAATT
1 GAATGTTGTGTT-TG-T--ATA
92012731 GAATGTTGTGTTTGTATA
1 GAATGTTGTGTTTGTATA
92012749 GAATGT
1 GAATGT
92012755 GTTTTATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
17 5 0.14
18 15 0.42
19 1 0.03
20 1 0.03
21 9 0.25
22 5 0.14
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (18 bp):
GAATGTTGTGTTTGTATA
Found at i:92012735 original size:21 final size:21
Alignment explanation
Indices: 92012681--92012742 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 21
92012671 AGCTTGTAAA
92012681 TATGTTAAATTGAATGTTGTGT
1 TATGTTAAATTGAATG-TGTGT
* *
92012703 T-TG-T--ATGGAATGTGTTT
1 TATGTTAAATTGAATGTGTGT
92012720 TATGTTAAATTGAATGTTGTGT
1 TATGTTAAATTGAATG-TGTGT
92012742 T
1 T
92012743 TGTATAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
17 5 0.16
18 9 0.29
19 1 0.03
20 1 0.03
21 9 0.29
22 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (21 bp):
TATGTTAAATTGAATGTGTGT
Found at i:92012735 original size:39 final size:39
Alignment explanation
Indices: 92012681--92012761 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
92012671 AGCTTGTAAA
*
92012681 TATGTTAAATTGAATGTTGTGTTTGTATGGAATGTGTTT
1 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
92012720 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
1 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
92012759 TAT
1 TAT
92012762 ATTTATGTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (39 bp):
TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
Found at i:92024290 original size:20 final size:20
Alignment explanation
Indices: 92024269--92024338 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
92024259 GAATTGAGTT
*
92024269 AAACAACAAAGAATCTATTT
1 AAACAACAAAGAATCTATTC
* * * *
92024289 AAGCAATAATGAATCGATTC
1 AAACAACAAAGAATCTATTC
* *
92024309 AAACAATAAACAATCTATTC
1 AAACAACAAAGAATCTATTC
92024329 AAACAACAAA
1 AAACAACAAA
92024339 AATAATCGAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.21
Consensus pattern (20 bp):
AAACAACAAAGAATCTATTC
Found at i:92026482 original size:47 final size:45
Alignment explanation
Indices: 92026403--92026491 Score: 110
Period size: 47 Copynumber: 1.9 Consensus size: 45
92026393 ACAATAATTC
92026403 TAAAAAAATTAAAAAATCTTTAAAATAAATATAAATTATCAAAATTAT
1 TAAAAAAATTAAAAAATCTTTAAAAT-AATAT-AATT-TCAAAATTAT
*
92026451 TAAAAATATT-AAAAATCATGTTAAAAT-ATATAATTTCAAAA
1 TAAAAAAATTAAAAAATC-T-TTAAAATAATATAATTTCAAAA
92026492 CACATGGAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
45 6 0.16
46 4 0.11
47 11 0.29
48 10 0.26
49 7 0.18
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (45 bp):
TAAAAAAATTAAAAAATCTTTAAAATAATATAATTTCAAAATTAT
Found at i:92035354 original size:12 final size:12
Alignment explanation
Indices: 92035337--92035368 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
92035327 TCAGTGAGTT
92035337 ACACGGCCTAGC
1 ACACGGCCTAGC
*
92035349 ACACGGCCTGGC
1 ACACGGCCTAGC
92035361 ACACGGCC
1 ACACGGCC
92035369 ATATGTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.44, G:0.28, T:0.06
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:92039666 original size:13 final size:13
Alignment explanation
Indices: 92039631--92039666 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
92039621 CTCCTCCTTA
*
92039631 AACAAAAAAAAAT
1 AACAATAAAAAAT
92039644 AACAATTAAAAAAT
1 AACAA-TAAAAAAT
92039658 AACAATAAA
1 AACAATAAA
92039667 CACTAACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (13 bp):
AACAATAAAAAAT
Found at i:92039794 original size:31 final size:33
Alignment explanation
Indices: 92039739--92039806 Score: 122
Period size: 31 Copynumber: 2.1 Consensus size: 33
92039729 CCAAACTAAA
92039739 CCCTAGATCTTCTTTTTTTCTTTTCCTTTCAAG
1 CCCTAGATCTTCTTTTTTTCTTTTCCTTTCAAG
92039772 CCCTAGATCTTC-TTTTTT-TTTTCCTTTCAAG
1 CCCTAGATCTTCTTTTTTTCTTTTCCTTTCAAG
92039803 CCCT
1 CCCT
92039807 CTTCTTCCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 17 0.49
32 6 0.17
33 12 0.34
ACGTcount: A:0.12, C:0.29, G:0.06, T:0.53
Consensus pattern (33 bp):
CCCTAGATCTTCTTTTTTTCTTTTCCTTTCAAG
Found at i:92040170 original size:19 final size:19
Alignment explanation
Indices: 92040146--92040183 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92040136 AAATACAAGG
92040146 TTGGTGCCGCCTCTACACC
1 TTGGTGCCGCCTCTACACC
92040165 TTGGTGCCGCCTCTACACC
1 TTGGTGCCGCCTCTACACC
92040184 ACCACAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.42, G:0.21, T:0.26
Consensus pattern (19 bp):
TTGGTGCCGCCTCTACACC
Found at i:92044320 original size:14 final size:14
Alignment explanation
Indices: 92044301--92044358 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
92044291 TTAAAACAAT
92044301 AAAGTAAATAAAAG
1 AAAGTAAATAAAAG
92044315 AAAGTAAATAAAAG
1 AAAGTAAATAAAAG
* *
92044329 AAACTAAA-GAAAG
1 AAAGTAAATAAAAG
92044342 AAAAG-AAATAAAAG
1 -AAAGTAAATAAAAG
92044356 AAA
1 AAA
92044359 CAAAAAGAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
13 10 0.26
14 28 0.74
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.10
Consensus pattern (14 bp):
AAAGTAAATAAAAG
Found at i:92044363 original size:9 final size:9
Alignment explanation
Indices: 92044324--92044363 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
92044314 GAAAGTAAAT
92044324 AAAAGAAAC
1 AAAAGAAAC
* *
92044333 TAAAGAAAG
1 AAAAGAAAC
*
92044342 AAAAGAAAT
1 AAAAGAAAC
92044351 AAAAGAAAC
1 AAAAGAAAC
92044360 AAAA
1 AAAA
92044364 AGAACAGCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (9 bp):
AAAAGAAAC
Done.