Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 32 of 444
Found at i:7852581 original size:71 final size:71
Alignment explanation
Indices: 7852348--7852597 Score: 275
Period size: 74 Copynumber: 3.5 Consensus size: 71
7852338 ATTAAAAAGA
* * * * * * *
7852348 CTCAACTCACCTTTCGCAATATGAATTAACTTTTGAAAATATAATTTGAAAATACCTTAGCGTGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAAATTGAAATTACCTCAGCGTGC
* *
7852413 CGCAAGG
65 CCCGAGG
* * **
7852420 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAATA--AATTGAAATTACCTCAGCGT
7852485 GCCCCGAGG
63 GCCCCGAGG
* * * * *
7852494 TTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAGCGTGCC
**
7852559 TTGAGG
66 CCGAGG
*
7852565 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
7852598 CTTGAAAACA
Statistics
Matches: 149, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
71 54 0.36
72 33 0.22
73 5 0.03
74 57 0.38
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAGCGTGCC
CCGAGG
Found at i:7852736 original size:70 final size:69
Alignment explanation
Indices: 7852623--7852753 Score: 208
Period size: 70 Copynumber: 1.9 Consensus size: 69
7852613 TTAAAAGCAG
* * *
7852623 AAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTGAA
1 AAATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTTTGAA
7852688 ACAT
66 ACAT
* *
7852692 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTT
1 AAATTGAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTT
7852754 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
69 9 0.16
70 47 0.84
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (69 bp):
AAATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTTTGAA
ACAT
Found at i:7852880 original size:160 final size:160
Alignment explanation
Indices: 7852465--7853165 Score: 1293
Period size: 160 Copynumber: 4.4 Consensus size: 160
7852455 ATTTAATAGG
* * * *
7852465 AATTGAAATTACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
7852530 AAAATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
7852595 TTTCTT-GAAAACATGAATTTAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
7852624 AATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
7852687 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
7852751 TTTCTTGGAAAACATGAATTTAAAAAGCAGA
131 TTTCTTGGAAAACATGAA-TTAAAAAGCAGA
7852782 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
7852847 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
7852912 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
7852942 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
7853007 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
7853072 TTTCTTGGAAAACATGAACTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
7853102 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
7853166 GAAAAAACAA
Statistics
Matches: 529, Mismatches: 8, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
156 26 0.05
157 79 0.15
158 45 0.09
159 37 0.07
160 304 0.57
161 38 0.07
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:7852897 original size:71 final size:71
Alignment explanation
Indices: 7852781--7852914 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
7852771 TAAAAAGCAG
* * *
7852781 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
7852846 AAACAT
66 AAACAT
* * *
7852852 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
7852915 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:7853057 original size:71 final size:71
Alignment explanation
Indices: 7852941--7853074 Score: 207
Period size: 71 Copynumber: 1.9 Consensus size: 71
7852931 TAAAAAGCAG
* *
7852941 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGCTGATTTTTG
7853006 AAACAT
66 AAACAT
* * *
7853012 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA-TCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACT-TCTCGCAATATGAGCTGATTTT
7853075 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 1 0.02
71 56 0.98
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:7865746 original size:12 final size:11
Alignment explanation
Indices: 7865713--7865742 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7865703 AATGATATTT
7865713 AAATATATATA
1 AAATATATATA
7865724 ATAATATATATA
1 A-AATATATATA
7865736 AAATATA
1 AAATATA
7865743 ATATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAATATATATA
Found at i:7865959 original size:13 final size:14
Alignment explanation
Indices: 7865941--7865971 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7865931 ATGTACGAAT
7865941 ATATACATATA-TA
1 ATATACATATATTA
7865954 ATATACATATATTA
1 ATATACATATATTA
7865968 ATAT
1 ATAT
7865972 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:7866542 original size:24 final size:22
Alignment explanation
Indices: 7866515--7866560 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
7866505 GGGAAAGGAA
7866515 AAAAAAAAGAGAGAAGAGGGAGAG
1 AAAAAAAAG-G-GAAGAGGGAGAG
*
7866539 AAAAGAAAGGGAAGAGGGAGAG
1 AAAAAAAAGGGAAGAGGGAGAG
7866561 GGAGCTCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 1 0.05
24 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (22 bp):
AAAAAAAAGGGAAGAGGGAGAG
Found at i:7870025 original size:22 final size:23
Alignment explanation
Indices: 7869984--7870026 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7869974 TAAATATTAT
7869984 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
7870007 TTTATT-ATTTTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
7870027 AAATGGTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:7870246 original size:41 final size:41
Alignment explanation
Indices: 7870201--7870283 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
7870191 AGAGAAGATG
*
7870201 AAGTAGAGGTTCTAGAGAATATTTTCATCAATTTAGAAGCA
1 AAGTAGAGGTTCTAGAGAATATGTTCATCAATTTAGAAGCA
7870242 AAGTAGAGGTTCTAGAGAATATGTTCATCAATTTAGAAGCA
1 AAGTAGAGGTTCTAGAGAATATGTTCATCAATTTAGAAGCA
7870283 A
1 A
7870284 GAAAATAGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (41 bp):
AAGTAGAGGTTCTAGAGAATATGTTCATCAATTTAGAAGCA
Found at i:7871380 original size:2 final size:2
Alignment explanation
Indices: 7871375--7871405 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7871365 AAATATATGA
7871375 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7871406 AAGTGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7872303 original size:16 final size:16
Alignment explanation
Indices: 7872284--7872329 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
7872274 TGTAATATCA
*
7872284 AATAATTTATTATTTT
1 AATAATTTATTATATT
7872300 AATAA---ATTATATT
1 AATAATTTATTATATT
7872313 AATAATTTATTATATT
1 AATAATTTATTATATT
7872329 A
1 A
7872330 TTGAATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 12 0.46
16 14 0.54
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATAATTTATTATATT
Found at i:7875112 original size:12 final size:13
Alignment explanation
Indices: 7875090--7875119 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7875080 GTACAGGCTT
7875090 CCATGAGAACCCA
1 CCATGAGAACCCA
7875103 CCAT-AGAACCCA
1 CCATGAGAACCCA
7875115 CCATG
1 CCATG
7875120 GAGTTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.37, C:0.40, G:0.13, T:0.10
Consensus pattern (13 bp):
CCATGAGAACCCA
Found at i:7877337 original size:6 final size:6
Alignment explanation
Indices: 7877321--7877354 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7877311 AAACCCATAT
*
7877321 CAGATA TAGATA CAGATA CAGATA CAGATA CAGA
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGA
7877355 AATACAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
CAGATA
Found at i:7879511 original size:11 final size:11
Alignment explanation
Indices: 7879497--7879541 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
7879487 AGAAAAATAT
7879497 TATTTTATTAA
1 TATTTTATTAA
*
7879508 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
7879521 TATTTTATTAT
1 TATTTTATTAA
7879532 TATTTTATTA
1 TATTTTATTA
7879542 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7881319 original size:21 final size:21
Alignment explanation
Indices: 7881295--7881412 Score: 58
Period size: 21 Copynumber: 5.2 Consensus size: 21
7881285 CTTCCTGAAA
7881295 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * *
7881316 TGAAA-GATTTCATGGCAACATGAT
1 TGAAATG-TGT-A-AG-ACCATGGT
7881340 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
* ** * *
7881362 TGAAAGGTACCATAGCAACATGAT
1 TGAAATGT-GTA-AG-ACCATGGT
*
7881386 ATGAAATATGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
7881408 TGAAA
1 TGAAA
7881413 GATGCCATGG
Statistics
Matches: 68, Mismatches: 19, Indels: 20
0.64 0.18 0.19
Matches are distributed among these distances:
20 1 0.01
21 19 0.28
22 14 0.21
23 6 0.09
24 14 0.21
25 13 0.19
26 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:7881346 original size:46 final size:46
Alignment explanation
Indices: 7881294--7881613 Score: 347
Period size: 46 Copynumber: 7.0 Consensus size: 46
7881284 GCTTCCTGAA
* ** *
7881294 ATGAAATGTGTAAGACCATGGTTGAAAGATTTCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7881340 ATGAAATGTGTAAGACCATGGTTGAAAGGTACCATAGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7881386 ATGAAAT-ATGTAAGACCATGGTTGAAAGATGCCATGGCAACATTAC
1 ATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * * * *
7881432 GGGAAATGAATAAGGCCATGGTTGGAAGATACCATGGCAGCGTGGC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7881478 ATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* ** * *
7881524 ATAAAATGAACAAGACCATGGTTGAAAGATACCGTGGCAACATGGC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7881570 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
7881614 TCAAAGATAT
Statistics
Matches: 230, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
46 229 1.00
47 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7891664 original size:10 final size:10
Alignment explanation
Indices: 7891646--7891694 Score: 73
Period size: 10 Copynumber: 4.9 Consensus size: 10
7891636 CTAAATTTTA
7891646 AAAGATAAAT
1 AAAGATAAAT
*
7891656 AAGGATAAAT
1 AAAGATAAAT
7891666 AAAGATAAAT
1 AAAGATAAAT
7891676 -AAGTATAAAT
1 AAAG-ATAAAT
7891686 AAAGATAAA
1 AAAGATAAA
7891695 AGCTAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 3 0.09
10 29 0.83
11 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:7891671 original size:20 final size:20
Alignment explanation
Indices: 7891646--7891694 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7891636 CTAAATTTTA
7891646 AAAGATAAATAAGGATAAAT
1 AAAGATAAATAAGGATAAAT
*
7891666 AAAGATAAATAAGTATAAAT
1 AAAGATAAATAAGGATAAAT
7891686 AAAGATAAA
1 AAAGATAAA
7891695 AGCTAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAGGATAAAT
Found at i:7903462 original size:15 final size:15
Alignment explanation
Indices: 7903442--7903471 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7903432 TTTAATCCTT
*
7903442 TATAAATTATAAAAA
1 TATAAACTATAAAAA
7903457 TATAAACTATAAAAA
1 TATAAACTATAAAAA
7903472 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:7903796 original size:195 final size:195
Alignment explanation
Indices: 7903464--7903854 Score: 703
Period size: 195 Copynumber: 2.0 Consensus size: 195
7903454 AAATATAAAC
7903464 TATAAAAAATTAAAATTTCATCTGGCCTCTCCTAAAAAAATTTTCTGACTTCGTCCCTGGCTACG
1 TATAAAAAATTAAAATTTCATCTGGCCTCTCCTAAAAAAATTTTCTGACTTCGTCCCTGGCTACG
*
7903529 ACTGTCATGATAAGAACTGCTAGGAAAACTGTAACTTTATTATTGTCATACATGATATTTACAAA
66 ACTGTCATGATAAGAACTGCTAAGAAAACTGTAACTTTATTATTGTCATACATGATATTTACAAA
* *
7903594 ACCATTGATCTAATGCTACGAATCAAGATTGTTGTTGATATCCATGGGAATCGTATTAAAAATGT
131 ACCATTGATCGAATGCTACGAATCAAGATTGTTGTTGATATCCATGAGAATCGTATTAAAAATGT
7903659 TATAAAAAATTAAAATTTCATCTGGCCTCTCCTAAAAAAATTTTCTGACTTCG-CCCTTGGCTAC
1 TATAAAAAATTAAAATTTCATCTGGCCTCTCCTAAAAAAATTTTCTGACTTCGTCCC-TGGCTAC
* *
7903723 GACTGTCATGATAAGAACTGCTAAGAAAACTGTAACTTTGTTGTTGTCATACATGATATTTACAA
65 GACTGTCATGATAAGAACTGCTAAGAAAACTGTAACTTTATTATTGTCATACATGATATTTACAA
* *
7903788 AACCATTGATCGAATGCTTCGAATCAAGATTGTTGTTGATATCCATGAGAATCGTATTGAAAATG
130 AACCATTGATCGAATGCTACGAATCAAGATTGTTGTTGATATCCATGAGAATCGTATTAAAAATG
7903853 T
195 T
7903854 T
1 T
7903855 GCCAAATGCT
Statistics
Matches: 188, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
194 3 0.02
195 185 0.98
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (195 bp):
TATAAAAAATTAAAATTTCATCTGGCCTCTCCTAAAAAAATTTTCTGACTTCGTCCCTGGCTACG
ACTGTCATGATAAGAACTGCTAAGAAAACTGTAACTTTATTATTGTCATACATGATATTTACAAA
ACCATTGATCGAATGCTACGAATCAAGATTGTTGTTGATATCCATGAGAATCGTATTAAAAATGT
Found at i:7905573 original size:18 final size:18
Alignment explanation
Indices: 7905550--7905585 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7905540 TTCCAAGCGG
7905550 CAGCAGCAGAAGCATCAA
1 CAGCAGCAGAAGCATCAA
*
7905568 CAGCAGCGGAAGCATCAA
1 CAGCAGCAGAAGCATCAA
7905586 GAATTTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.28, G:0.25, T:0.06
Consensus pattern (18 bp):
CAGCAGCAGAAGCATCAA
Found at i:7912822 original size:40 final size:40
Alignment explanation
Indices: 7912778--7912857 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
7912768 CTTCAGTTGC
*
7912778 ACGTACTTTACCCGAGA-AACTTATGTGCATGGATTCTTGT
1 ACGTACTTTACCCG-GACAACTTATGTGCATGAATTCTTGT
7912818 ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
1 ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
7912858 GTGCATGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (40 bp):
ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
Found at i:7915787 original size:40 final size:40
Alignment explanation
Indices: 7915743--7915825 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
7915733 ACATCTTCAG
*
7915743 TTGCACGTACTTTACCCGGGA-AACTTATGTGCATGGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATGTGCATGAATTC
7915783 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
7915823 TTG
1 TTG
7915826 TGTGCATGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 3 0.07
40 38 0.93
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
Found at i:7920508 original size:44 final size:45
Alignment explanation
Indices: 7920418--7920546 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
7920408 GACAGAACGA
*
7920418 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
7920464 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
7920508 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7920547 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:7927899 original size:44 final size:45
Alignment explanation
Indices: 7927809--7927937 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
7927799 GACAGAACGA
*
7927809 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
7927855 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
7927899 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7927938 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:7932237 original size:23 final size:24
Alignment explanation
Indices: 7932206--7932277 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7932196 CTGCTAGTTT
7932206 TTTTTTTTTCTACACTCACAACAC
1 TTTTTTTTTCTACACTCACAACAC
* * *
7932230 TTTTTTTTTCTCAAACTCACTA-AT
1 TTTTTTTTTCT-ACACTCACAACAC
*
7932254 TTTTTTTTTCAACACTCACAACAC
1 TTTTTTTTTCTACACTCACAACAC
7932278 ATAAACTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 8 0.21
24 23 0.59
25 8 0.21
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTTTTTTTCTACACTCACAACAC
Found at i:7937655 original size:40 final size:41
Alignment explanation
Indices: 7937609--7937748 Score: 142
Period size: 41 Copynumber: 3.4 Consensus size: 41
7937599 TAAAACACAT
7937609 AGCAATAGCGGCG-TTTTACCAAAAACGCCACTAAAAATAG
1 AGCAATAGCGGCGCTTTTACCAAAAACGCCACTAAAAATAG
** * * *
7937649 AGCAATAGCAAC-CTTTTTACCAAAAACGCCTCGAAAAATGG
1 AGCAATAGCGGCGC-TTTTACCAAAAACGCCACTAAAAATAG
* ** * *
7937690 AGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTAAAAACCAG
1 AGCAATAGCGGCGCTTTTACCAAAAACGCCACTAAAAA-TAG
*
7937731 AGCATTAGCGGCGCTTTT
1 AGCAATAGCGGCGCTTTT
7937749 GGAAAAACGA
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
40 25 0.30
41 56 0.68
42 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (41 bp):
AGCAATAGCGGCGCTTTTACCAAAAACGCCACTAAAAATAG
Found at i:7937743 original size:41 final size:41
Alignment explanation
Indices: 7937689--7937766 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
7937679 TCGAAAAATG
*
7937689 GAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACCA
1 GAGCATTAGCGGCGCTTTTGGAAAAACGACGCTAAAAACCA
7937730 GAGCATTAGCGGCGCTTTTGGAAAAACGACGCTAAAA
1 GAGCATTAGCGGCGCTTTTGGAAAAACGACGCTAAAA
7937767 GTCATATAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTGGAAAAACGACGCTAAAAACCA
Found at i:7937938 original size:7 final size:7
Alignment explanation
Indices: 7937923--7938020 Score: 63
Period size: 7 Copynumber: 13.4 Consensus size: 7
7937913 TTAATTATCA
*
7937923 TTATAGT
1 TTATGGT
7937930 TTATGGT
1 TTATGGT
7937937 TTATGGT
1 TTATGGT
*
7937944 TTAAT-AT
1 TT-ATGGT
*
7937951 TTATAGT
1 TTATGGT
*
7937958 TTAGGGT
1 TTATGGT
7937965 TTATGGT
1 TTATGGT
7937972 TTATGAGT
1 TTATG-GT
7937980 TAACTATGGT
1 T---TATGGT
* *
7937990 TTAAGAT
1 TTATGGT
*
7937997 ATATGGT
1 TTATGGT
*
7938004 TTAGGGT
1 TTATGGT
*
7938011 TTAAGGT
1 TTATGGT
7938018 TTA
1 TTA
7938021 GGAGTTAACT
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
6 2 0.03
7 57 0.80
8 5 0.07
10 3 0.04
11 4 0.06
ACGTcount: A:0.26, C:0.01, G:0.23, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:7937992 original size:46 final size:46
Alignment explanation
Indices: 7937938--7938031 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
7937928 GTTTATGGTT
* * * *
7937938 TATGGTTTAATATTTATAGTTTAGGGTTTATGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
*
7937984 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
7938030 TA
1 TA
7938032 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.46
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:7938015 original size:21 final size:21
Alignment explanation
Indices: 7937929--7938020 Score: 76
Period size: 21 Copynumber: 4.2 Consensus size: 21
7937919 ATCATTATAG
* *
7937929 TTTATGGTTTATGGTTTAATA
1 TTTATGGTTTAGGGTTTAAGA
* * *
7937950 TTTATAGTTTAGGGTTTATGG
1 TTTATGGTTTAGGGTTTAAGA
*
7937971 TTTATGAGTTAACTATGGTTTAAGA
1 TTTATG-GTT---TAGGGTTTAAGA
* *
7937996 TATATGGTTTAGGGTTTAAGG
1 TTTATGGTTTAGGGTTTAAGA
7938017 TTTA
1 TTTA
7938021 GGAGTTAACT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
21 34 0.63
22 3 0.06
24 3 0.06
25 14 0.26
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.50
Consensus pattern (21 bp):
TTTATGGTTTAGGGTTTAAGA
Found at i:7938107 original size:27 final size:28
Alignment explanation
Indices: 7938062--7938114 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
7938052 AATTATGGGT
*
7938062 TTAGGGATTATGATTTAAGGTTTAAGAG
1 TTAGGGATTATGATTTAAGGTGTAAGAG
7938090 TTAGGG-TTA-GAGTTTAAGGTGTAAG
1 TTAGGGATTATGA-TTTAAGGTGTAAG
7938115 GGTTTGGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 2 0.09
27 15 0.65
28 6 0.26
ACGTcount: A:0.30, C:0.00, G:0.32, T:0.38
Consensus pattern (28 bp):
TTAGGGATTATGATTTAAGGTGTAAGAG
Found at i:7938127 original size:21 final size:21
Alignment explanation
Indices: 7938103--7938146 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7938093 GGGTTAGAGT
* *
7938103 TTAA-GGTGTAAGGGTTTGGGG
1 TTAAGGGT-TAAGGATTTAGGG
7938124 TTAAGGGTTAAGGATTTAGGG
1 TTAAGGGTTAAGGATTTAGGG
7938145 TT
1 TT
7938147 TAGTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (21 bp):
TTAAGGGTTAAGGATTTAGGG
Found at i:7939362 original size:25 final size:25
Alignment explanation
Indices: 7939334--7939397 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
7939324 ATTCAAAACT
7939334 CACCGTTTCAATTG-TTCCTACCACG
1 CACCGTTTCAATTGTTTCC-ACCACG
*
7939359 CACCATTTCAATTGTTTCCACCACG
1 CACCGTTTCAATTGTTTCCACCACG
7939384 CACCGTTTCAATTG
1 CACCGTTTCAATTG
7939398 ATTTTACAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.33
Consensus pattern (25 bp):
CACCGTTTCAATTGTTTCCACCACG
Found at i:7945100 original size:44 final size:43
Alignment explanation
Indices: 7944919--7945074 Score: 278
Period size: 43 Copynumber: 3.6 Consensus size: 43
7944909 GGAAAAAAAT
*
7944919 GCCGCTAAAGGTCAAGGCTTTTAGTGGCGTTTGTAGG-AAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGT-GGTAAAAGC
7944962 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC
7945005 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC
7945048 GCCGCTAAAGGTCAAGGCTTTTTAGCG
1 GCCGCTAAAGGTCAAGGC-TTTTAGCG
7945075 ACGCTTTTTT
Statistics
Matches: 110, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
42 2 0.02
43 100 0.91
44 8 0.07
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC
Found at i:7945186 original size:31 final size:31
Alignment explanation
Indices: 7945151--7945217 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
7945141 CTTCTTGTAT
* *
7945151 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
7945182 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
7945213 TAAAA
1 TAAAA
7945218 AATACAACCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.18, G:0.04, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:7945503 original size:21 final size:21
Alignment explanation
Indices: 7945477--7945522 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7945467 GCTCGTGCCT
*
7945477 CTGCCTCTCTCACTGCAGCCG
1 CTGCCTCCCTCACTGCAGCCG
* * *
7945498 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCACTGCAGCCG
7945519 CTGC
1 CTGC
7945523 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.50, G:0.17, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCACTGCAGCCG
Found at i:7948394 original size:27 final size:28
Alignment explanation
Indices: 7948357--7948496 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
7948347 AGCATGGCTT
* *
7948357 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7948383 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
7948411 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
7948438 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
7948465 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7948492 CCAGA
1 CCAGA
7948497 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:7948667 original size:27 final size:26
Alignment explanation
Indices: 7948601--7948673 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
7948591 AAATTAACCC
** *
7948601 TAGGGGTATAACGGTAATTTTACACC
1 TAGGGGTATAATAGTAATTTTACACA
*
7948627 TAGGGGTATAATAGTAATTTTCATACA
1 TAGGGGTATAATAGTAATTTT-ACACA
*
7948654 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
7948674 AGCTACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTACACA
Found at i:7950147 original size:26 final size:26
Alignment explanation
Indices: 7950111--7950244 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
7950101 CATGAAATTC
7950111 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7950137 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7950163 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7950189 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7950213 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7950239 TTATCA
1 TTATCA
7950245 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7950235 original size:50 final size:52
Alignment explanation
Indices: 7950111--7950244 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
7950101 CATGAAATTC
* *
7950111 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
7950163 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
7950213 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
7950245 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:7954236 original size:27 final size:28
Alignment explanation
Indices: 7954199--7954338 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
7954189 AGCATGGCTG
* *
7954199 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7954225 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
7954253 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
7954280 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
7954307 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7954334 CCAGA
1 CCAGA
7954339 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:7955987 original size:26 final size:26
Alignment explanation
Indices: 7955951--7956083 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
7955941 ACATGAATTC
7955951 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7955977 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
7956003 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
7956028 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7956052 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7956078 TTATCA
1 TTATCA
7956084 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
24 24 0.23
25 24 0.23
26 55 0.53
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7964912 original size:37 final size:38
Alignment explanation
Indices: 7964812--7964913 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
7964802 ATATATTTGG
7964812 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
7964848 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
7964890 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
7964914 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:7965043 original size:15 final size:15
Alignment explanation
Indices: 7965025--7965076 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
7965015 ATACACTAAT
*
7965025 ATAATAATAGCTATA
1 ATAATAATAGCAATA
*
7965040 ATAATACTAGCAATA
1 ATAATAATAGCAATA
* * *
7965055 GTAATAATTTGTAATA
1 ATAATAA-TAGCAATA
7965071 ATAATA
1 ATAATA
7965077 TATACACAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.35
Consensus pattern (15 bp):
ATAATAATAGCAATA
Found at i:7965148 original size:2 final size:2
Alignment explanation
Indices: 7965099--7965129 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7965089 GGTATTTAAA
*
7965099 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7965130 ATAGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7969772 original size:14 final size:14
Alignment explanation
Indices: 7969753--7969792 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
7969743 TTCATCCCTA
7969753 TTATTATTTATACT
1 TTATTATTTATACT
7969767 TTATTA-TTATCAC-
1 TTATTATTTAT-ACT
7969780 TTATTATTT-TACT
1 TTATTATTTATACT
7969793 ATTGTTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 2 0.09
13 11 0.48
14 10 0.43
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTATTTATACT
Found at i:7969922 original size:21 final size:21
Alignment explanation
Indices: 7969896--7969962 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
7969886 TTCATTATTA
7969896 TTATTATTAT-TATTATATGTT
1 TTATTATTATATATTATATG-T
* *
7969917 TTATTA-TATATGTATATATCT
1 TTATTATTATATAT-TATATGT
*
7969938 TTAATA-TATATATATATATGT
1 TTATTATTATATAT-TATATGT
7969959 TTAT
1 TTAT
7969963 GTAGTATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 3 0.08
21 30 0.79
22 5 0.13
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTATATATTATATGT
Found at i:7969923 original size:3 final size:3
Alignment explanation
Indices: 7969767--7969911 Score: 53
Period size: 3 Copynumber: 47.3 Consensus size: 3
7969757 TATTTATACT
* * * *
7969767 TTA TTA TTA TCA CTTA TTA TT- TTA CTA TTG TTA TCTAA TCTA TTA TCA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-T-A T-TA TTA TTA
* * * * *
7969815 TTA TCA TTA TTA TTA TT- TTA CTA TTA TAA CTTA ATA -TA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* * * ** * * * *
7969859 TTT TTA TTT TTA TTC TCG TCA CTG TCA TTCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
7969905 TTA TTA T
1 TTA TTA T
7969912 ATGTTTTATT
Statistics
Matches: 102, Mismatches: 32, Indels: 16
0.68 0.21 0.11
Matches are distributed among these distances:
2 6 0.06
3 82 0.80
4 10 0.10
5 4 0.04
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:7970206 original size:21 final size:22
Alignment explanation
Indices: 7970174--7970226 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
7970164 ATTAATATTA
* *
7970174 GTATATGTTTT-AT-TATATAT
1 GTATATATTTTAATATATATAG
7970194 GTATATATCTTTAATATATATAG
1 GTATATAT-TTTAATATATATAG
7970217 GTATATATTT
1 GTATATATTT
7970227 ATGTAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.25
21 3 0.11
22 4 0.14
23 14 0.50
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (22 bp):
GTATATATTTTAATATATATAG
Found at i:7970305 original size:24 final size:23
Alignment explanation
Indices: 7970276--7970327 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
7970266 CTAATATGTA
*
7970276 TATATTATGTAGATATTTTAATAT
1 TATATTATGTAGACATTTT-ATAT
* *
7970300 TATATTATGTATACATTTTTTAT
1 TATATTATGTAGACATTTTATAT
7970323 TATAT
1 TATAT
7970328 ATTACGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.58
Consensus pattern (23 bp):
TATATTATGTAGACATTTTATAT
Found at i:7970328 original size:25 final size:25
Alignment explanation
Indices: 7970274--7970342 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
7970264 TTCTAATATG
*
7970274 TATATATTATG--TAGATATTTTAA
1 TATATATTATGTATACATATTTTAA
* *
7970297 TATTATATTATGTATACATTTTTTAT
1 TA-TATATTATGTATACATATTTTAA
* *
7970323 TATATATTACGTATATATAT
1 TATATATTATGTATACATAT
7970343 CTTTTTAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 2 0.05
24 9 0.24
25 15 0.41
26 11 0.30
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (25 bp):
TATATATTATGTATACATATTTTAA
Found at i:7970493 original size:24 final size:25
Alignment explanation
Indices: 7970420--7970494 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
7970410 ATATTATCTC
* *
7970420 ATGTATATATTTTTTAATAACTATATT
1 ATGTACATA-TTTTTAAT-ACTATGTT
** * *
7970447 ATGTATGTATTTTTAACATTATGTT
1 ATGTACATATTTTTAATACTATGTT
7970472 ATGTACATA-TTTTAATACTATGT
1 ATGTACATATTTTTAATACTATGT
7970495 ATATACCTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 12 0.30
25 13 0.32
26 7 0.17
27 8 0.20
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.53
Consensus pattern (25 bp):
ATGTACATATTTTTAATACTATGTT
Found at i:7976711 original size:29 final size:30
Alignment explanation
Indices: 7976658--7976768 Score: 104
Period size: 31 Copynumber: 3.7 Consensus size: 30
7976648 TATTAAAATT
* *
7976658 ATACATG-AACTTTGATCTAATGTGCAATTTG
1 ATACATGAAACTTTGAT-T-TTGTGCAATATG
7976689 ATACATGAAA-TTTGATTTTGTGCAATATG
1 ATACATGAAACTTTGATTTTGTGCAATATG
* * *
7976718 -CACATTAAACTTTGATTTTGGTTCAA-ATG
1 ATACATGAAACTTTGATTTT-GTGCAATATG
*
7976747 TATACATAAAACTTTGATTTTG
1 -ATACATGAAACTTTGATTTTG
7976769 ATTCAATTGT
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
28 7 0.10
29 22 0.32
30 7 0.10
31 30 0.44
32 2 0.03
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.41
Consensus pattern (30 bp):
ATACATGAAACTTTGATTTTGTGCAATATG
Found at i:7977320 original size:90 final size:88
Alignment explanation
Indices: 7977166--7977461 Score: 352
Period size: 90 Copynumber: 3.4 Consensus size: 88
7977156 AAAAGTCCTT
* *
7977166 AAACTTTTTCAAAAAAATG-AATTAAGCCTCTCTTCTTTTTTTTTCACTCATTTAAGCAAC-TGA
1 AAACTTCTTCAAAAAAA-GCAATTAAGCC-C-CTT-TTTTTTTTTCACTCAATTAAGC-ACTTGA
*
7977229 ACTTTTAAAATGCATCAAAAAGACCCTC
61 ACTTTCAAAATGCATCAAAAAGACCCTC
* *
7977257 AAACTTCTTCAAAAAAAGCAATTAGGCCCACTTTTTTTTTTTGCACTCAAATAAGCACTTGAACT
1 AAACTTCTTCAAAAAAAGCAATTAAGCCC-CTTTTTTTTTTT-CACTCAATTAAGCACTTGAACT
* *
7977322 TTCAAAATACTTCAAAAAGACCCTC
64 TTCAAAATGCATCAAAAAGACCCTC
** *
7977347 AAACTTCTTCAAAAAAAGCAATTAAGCCCC---TTTTTTTTCACTCAATTGTGTACTTGAACTTT
1 AAACTTCTTCAAAAAAAGCAATTAAGCCCCTTTTTTTTTTTCACTCAATTAAGCACTTGAACTTT
* * *
7977409 CAAAATGTATAAAAAAGATCCTC
66 CAAAATGCATCAAAAAGACCCTC
* *
7977432 AAAATTTTTC-AAAAAAGCAATTAAGCCCCT
1 AAACTTCTTCAAAAAAAGCAATTAAGCCCCT
7977462 ACTTTTATTA
Statistics
Matches: 181, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
84 19 0.10
85 46 0.25
86 8 0.04
89 12 0.07
90 72 0.40
91 24 0.13
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (88 bp):
AAACTTCTTCAAAAAAAGCAATTAAGCCCCTTTTTTTTTTTCACTCAATTAAGCACTTGAACTTT
CAAAATGCATCAAAAAGACCCTC
Found at i:7977768 original size:20 final size:20
Alignment explanation
Indices: 7977743--7977824 Score: 75
Period size: 19 Copynumber: 4.3 Consensus size: 20
7977733 TTCTTATGAG
7977743 TTTATAAAATTTTATAATTT
1 TTTATAAAATTTTATAATTT
*
7977763 TTTAT---ATTTCTAT-ATAT
1 TTTATAAAATTT-TATAATTT
** *
7977780 TTTATAATTTTTTATGA-TT
1 TTTATAAAATTTTATAATTT
*
7977799 TTTATAAAATTTTACAATTT
1 TTTATAAAATTTTATAATTT
7977819 TTTATA
1 TTTATA
7977825 TATTTTTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
17 12 0.24
18 3 0.06
19 17 0.35
20 17 0.35
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (20 bp):
TTTATAAAATTTTATAATTT
Found at i:7977839 original size:10 final size:10
Alignment explanation
Indices: 7977705--7977839 Score: 79
Period size: 10 Copynumber: 14.0 Consensus size: 10
7977695 TTTTACGAAA
7977705 TTTAT-ATTT
1 TTTATAATTT
7977714 TTT-TACATTT
1 TTTATA-ATTT
*
7977724 TATATAATTT
1 TTTATAATTT
* *
7977734 TCTTATGA--G
1 T-TTATAATTT
**
7977743 TTTATAAAAT
1 TTTATAATTT
7977753 TTTATAATTT
1 TTTATAATTT
7977763 TTTAT-A-TT
1 TTTATAATTT
* *
7977771 TCTAT-ATAT
1 TTTATAATTT
7977780 TTTATAATTT
1 TTTATAATTT
*
7977790 TTTATGA-TT
1 TTTATAATTT
**
7977799 TTTATAAAAT
1 TTTATAATTT
*
7977809 TTTACAATTT
1 TTTATAATTT
7977819 TTTATATATTT
1 TTTATA-ATTT
*
7977830 TTTATGATTT
1 TTTATAATTT
7977840 ATATATATTC
Statistics
Matches: 96, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
8 13 0.14
9 18 0.19
10 50 0.52
11 15 0.16
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:7977848 original size:20 final size:19
Alignment explanation
Indices: 7977722--7977844 Score: 67
Period size: 19 Copynumber: 6.4 Consensus size: 19
7977712 TTTTTTACAT
7977722 TTTATATAATTTTCTTATGA
1 TTTATATAATTTT-TTATGA
* *
7977742 GTTTATA-AA-ATTTTATAA
1 -TTTATATAATTTTTTATGA
* *
7977760 TTT-TTTATATTTCTATAT-A
1 TTTATATA-ATTT-TTTATGA
7977779 TTT-TATAATTTTTTATGA
1 TTTATATAATTTTTTATGA
* ** **
7977797 TTTTTATAAAATTTTACAA
1 TTTATATAATTTTTTATGA
*
7977816 TTTTTTATATATTTTTTATGA
1 -TTTATATA-ATTTTTTATGA
7977837 TTTATATA
1 TTTATATA
7977845 TATTCTAATT
Statistics
Matches: 78, Mismatches: 16, Indels: 17
0.70 0.14 0.15
Matches are distributed among these distances:
16 1 0.01
17 8 0.10
18 14 0.18
19 21 0.27
20 21 0.27
21 13 0.17
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTATATAATTTTTTATGA
Found at i:7977856 original size:56 final size:55
Alignment explanation
Indices: 7977743--7977856 Score: 133
Period size: 56 Copynumber: 2.0 Consensus size: 55
7977733 TTCTTATGAG
* * *
7977743 TTTATAAAATTTTATAATTTTTTATATTTCTATATATTTTATAATTTTTTATGATT
1 TTTATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATATTCTA-GATT
* *
7977799 TTTATAAAATTTTACAATTTTTTATATATTTTTTATGA-TTTATATATATTCTA-ATT
1 TTTATAAAATTTTACAATTTTTTATAT-TTCTATAT-ATTTTATA-ATATTCTAGATT
7977855 TT
1 TT
7977857 AAATAAATTG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
56 31 0.62
57 12 0.24
58 7 0.14
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (55 bp):
TTTATAAAATTTTACAATTTTTTATATTTCTATATATTTTATAATATTCTAGATT
Found at i:7978086 original size:90 final size:89
Alignment explanation
Indices: 7977935--7978163 Score: 268
Period size: 90 Copynumber: 2.5 Consensus size: 89
7977925 AATTTTTAAT
* ** * * *
7977935 AAAAGCAAGGGCTTAATT--TTTTTTTTTAAAGTTTGAAGGTCTTTTTGATGCATTTTGAAAGTT
1 AAAAGCACGGGCTTAATTGCTTTTTTTGAAAAGTTTG-AGGGCTTTTTGAAGCATTTTAAAAGTT
*
7977998 CAAATA-CCAAATTGAGTG-GAAAAA
65 CAAATACCCAAA-TGAGTGAAAAAAA
* * *
7978022 AAAGGTAGGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGCATTTTAAAAGT
1 AAAAGCACGGGCTTAATTGCTTTTTTTGAAAA-GTTTGAGGG-CTTTTTGAAGCATTTTAAAAGT
*
7978087 TCAAGTACCCAAATGAGTGCAAAAAAA
64 TCAAATACCCAAATGAGTG-AAAAAAA
7978114 AAAAGCACGGGCTTAATTGCTTTTTTTTGAAAAAGTTTGAGGGCTTTTTG
1 AAAAGCACGGGCTTAATTGC-TTTTTTTG-AAAAGTTTGAGGGCTTTTTG
7978164 CACCCTTAAG
Statistics
Matches: 120, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
87 15 0.12
89 13 0.11
90 37 0.31
91 5 0.04
92 29 0.24
93 17 0.14
94 4 0.03
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (89 bp):
AAAAGCACGGGCTTAATTGCTTTTTTTGAAAAGTTTGAGGGCTTTTTGAAGCATTTTAAAAGTTC
AAATACCCAAATGAGTGAAAAAAA
Found at i:7979498 original size:19 final size:21
Alignment explanation
Indices: 7979470--7979549 Score: 60
Period size: 20 Copynumber: 3.9 Consensus size: 21
7979460 CTGAATCCCG
*
7979470 AAACTAGAACTAT-AACCCT-
1 AAACTCGAACTATAAACCCTC
*
7979489 AAACTCGAACTCTAAACCCTC
1 AAACTCGAACTATAAACCCTC
* *
7979510 AACCTCGAACCT-CAAA-CCTC
1 AAACTCGAA-CTATAAACCCTC
* *
7979530 AAACTCTAAACCATAAACCC
1 AAACTC-GAACTATAAACCC
7979550 AAACCCTGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
19 11 0.23
20 16 0.34
21 16 0.34
22 4 0.09
ACGTcount: A:0.42, C:0.36, G:0.04, T:0.17
Consensus pattern (21 bp):
AAACTCGAACTATAAACCCTC
Found at i:7980014 original size:16 final size:15
Alignment explanation
Indices: 7979980--7980046 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
7979970 TAATTAATAC
* *
7979980 AAAATAATATTATTT
1 AAAATAATAATAATT
7979995 AAAATAATAAATAATT
1 AAAATAAT-AATAATT
* *
7980011 AAAAT-ATACTAAAT
1 AAAATAATAATAATT
*
7980025 ACAAAT-ATTATAA-T
1 A-AAATAATAATAATT
7980039 AAAATAAT
1 AAAATAAT
7980047 TCCTACTCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
13 4 0.09
14 10 0.23
15 19 0.44
16 10 0.23
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAATAATAATAATT
Found at i:7995330 original size:28 final size:31
Alignment explanation
Indices: 7995297--7995375 Score: 83
Period size: 33 Copynumber: 2.5 Consensus size: 31
7995287 TAGTAACAAC
7995297 AATAATGATAAAAT-ATAAG-A-AATAATAG
1 AATAATGATAAAATAATAAGTACAATAATAG
*
7995325 AATAATGACAATAATAATAAGTAGCAATAATAG
1 AATAATGATAA-AATAATAAGTA-CAATAATAG
*
7995358 AATTAATAATAAACATAA
1 AA-TAATGATAAA-ATAA
7995376 AGTTGATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
28 10 0.24
29 3 0.07
30 5 0.12
31 1 0.02
33 11 0.27
34 11 0.27
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.25
Consensus pattern (31 bp):
AATAATGATAAAATAATAAGTACAATAATAG
Found at i:7997769 original size:15 final size:15
Alignment explanation
Indices: 7997738--7997780 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
7997728 TTGTGGGGTT
7997738 TTTTAAAAATATTTTA
1 TTTTAAAAATA-TTTA
7997754 TTTATAAAAATA-TTA
1 TTT-TAAAAATATTTA
7997769 TTTTAATAAATA
1 TTTTAA-AAATA
7997781 AATTTCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.12
15 11 0.44
16 3 0.12
17 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTTAAAAATATTTA
Found at i:7997777 original size:17 final size:17
Alignment explanation
Indices: 7997741--7997778 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7997731 TGGGGTTTTT
*
7997741 TAAAAATATTTTATTTA
1 TAAAAATATTTTATTAA
7997758 TAAAAATATTATT-TTAA
1 TAAAAATATT-TTATTAA
7997775 TAAA
1 TAAA
7997779 TAAATTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAAATATTTTATTAA
Found at i:7998749 original size:17 final size:17
Alignment explanation
Indices: 7998727--7998761 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7998717 TTATGATTGC
7998727 ACTCAACATTTGTTGGT
1 ACTCAACATTTGTTGGT
7998744 ACTCAACATTTGTTGGT
1 ACTCAACATTTGTTGGT
7998761 A
1 A
7998762 TCTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (17 bp):
ACTCAACATTTGTTGGT
Found at i:8004785 original size:19 final size:19
Alignment explanation
Indices: 8004760--8004811 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
8004750 AATTACAAGA
8004760 AAAAAATCAAAATGATTT-T
1 AAAAAATCAAAAT-ATTTAT
*
8004779 CAAAAATTCAAAATATTTAT
1 -AAAAAATCAAAATATTTAT
8004799 AAAAAATCCAAAA
1 AAAAAAT-CAAAA
8004812 CTTATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATCAAAATATTTAT
Found at i:8013464 original size:19 final size:19
Alignment explanation
Indices: 8013430--8013501 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 19
8013420 TTATTTGTAT
8013430 TTTTTATATATTTAAAATTTA
1 TTTTTA-AT-TTTAAAATTTA
8013451 TTTTTAATTTTAAAAATTTA
1 TTTTTAATTTT-AAAATTTA
* * *
8013471 --ATTAATTTCAAAATTAA
1 TTTTTAATTTTAAAATTTA
*
8013488 TATTTAATTATTAA
1 TTTTTAATT-TTAA
8013502 CACTATTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.17
18 7 0.17
19 9 0.21
20 13 0.31
21 6 0.14
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTTAATTTTAAAATTTA
Found at i:8013466 original size:20 final size:21
Alignment explanation
Indices: 8013430--8013470 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
8013420 TTATTTGTAT
8013430 TTTTTATATATTTAAAATTTA
1 TTTTTATATATTTAAAATTTA
8013451 TTTTTA-AT-TTTAAAAATTTA
1 TTTTTATATATTT-AAAATTTA
8013471 ATTAATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 10 0.53
21 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTATATATTTAAAATTTA
Found at i:8018431 original size:24 final size:25
Alignment explanation
Indices: 8018382--8018432 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
8018372 ATGTTGATGT
*
8018382 ATAGAAATCAATTTTTAACAGTAAA
1 ATAGAAAACAATTTTTAACAGTAAA
*
8018407 ATAGAAAAGAATTTTTAACAG-AAA
1 ATAGAAAACAATTTTTAACAGTAAA
8018431 AT
1 AT
8018433 TAATTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (25 bp):
ATAGAAAACAATTTTTAACAGTAAA
Found at i:8021633 original size:4 final size:4
Alignment explanation
Indices: 8021626--8021659 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8021616 GAACAGTAAG
* *
8021626 TACA TACA TACA TACA TACA TGCA TACA TGCA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TA
8021660 TAGATTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:8034163 original size:23 final size:23
Alignment explanation
Indices: 8034137--8034186 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8034127 TGGAATGTAT
8034137 AACTTTTACCAAATACAATATCA
1 AACTTTTACCAAATACAATATCA
8034160 AACTTTTACCAAATACAATATCA
1 AACTTTTACCAAATACAATATCA
8034183 AACT
1 AACT
8034187 CAAGTATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (23 bp):
AACTTTTACCAAATACAATATCA
Found at i:8040589 original size:5 final size:5
Alignment explanation
Indices: 8040584--8040617 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
8040574 AAAATCGAAA
* *
8040584 CAAAA CAAAA CAAAC CAAAC CAAAC CAAAC CAAA
1 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAA
8040618 GGGAAAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAC
Found at i:8041214 original size:20 final size:20
Alignment explanation
Indices: 8041176--8041214 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8041166 ATTAAAACTC
* * *
8041176 ATAATTATTTTTTATAATTT
1 ATAATGATTTTCTAAAATTT
8041196 ATAATGATTTTCTAAAATT
1 ATAATGATTTTCTAAAATT
8041215 AGAACAGAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (20 bp):
ATAATGATTTTCTAAAATTT
Found at i:8042155 original size:23 final size:23
Alignment explanation
Indices: 8042125--8042228 Score: 190
Period size: 23 Copynumber: 4.5 Consensus size: 23
8042115 GCGGATTCCT
8042125 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
*
8042148 CCCAAACACACCAGAATATTCAA
1 CCCAAACACACCAGAATATCCAA
*
8042171 CCCAAACACACCAGAATATTCAA
1 CCCAAACACACCAGAATATCCAA
8042194 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
8042217 CCCAAACACACC
1 CCCAAACACACC
8042229 CGGAATATTA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 79 1.00
ACGTcount: A:0.47, C:0.39, G:0.04, T:0.10
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:8042749 original size:15 final size:15
Alignment explanation
Indices: 8042731--8042780 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
8042721 ATATATATAT
8042731 TATAATTTCAATCAA
1 TATAATTTCAATCAA
*
8042746 TATAAATTCAATCAA
1 TATAATTTCAATCAA
* *
8042761 AATGATTTCAATCAA
1 TATAATTTCAATCAA
8042776 TATAA
1 TATAA
8042781 ATTTGATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (15 bp):
TATAATTTCAATCAA
Found at i:8043560 original size:15 final size:15
Alignment explanation
Indices: 8043521--8043567 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 15
8043511 CCTGTTTCTT
8043521 CTCTGTTTCGTTTCCA
1 CTCTGTTTC-TTTCCA
*
8043537 CATTCTGTTTCTTTTCA
1 C--TCTGTTTCTTTCCA
8043554 CTCTGTTTCTTTCC
1 CTCTGTTTCTTTCC
8043568 TTTATTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 12 0.44
16 1 0.04
17 6 0.22
18 8 0.30
ACGTcount: A:0.06, C:0.30, G:0.09, T:0.55
Consensus pattern (15 bp):
CTCTGTTTCTTTCCA
Found at i:8043797 original size:21 final size:22
Alignment explanation
Indices: 8043744--8043800 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
8043734 CAATTTAAAT
*
8043744 AATAATAACAATAACAATAATA
1 AATAATAATAATAACAATAATA
* *
8043766 ATTAA-ATATAA-AACTATAATA
1 AATAATA-ATAATAACAATAATA
8043787 AATAATAATAATAA
1 AATAATAATAATAA
8043801 TTTAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (22 bp):
AATAATAATAATAACAATAATA
Found at i:8046832 original size:20 final size:19
Alignment explanation
Indices: 8046807--8046847 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8046797 TTAAAAATAT
*
8046807 AAATTTAATATTTTTTAAAA
1 AAATTTAATA-TATTTAAAA
*
8046827 AAATTTCATATATTTAAAA
1 AAATTTAATATATTTAAAA
8046846 AA
1 AA
8046848 TTGTACCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATTTAATATATTTAAAA
Found at i:8047786 original size:51 final size:51
Alignment explanation
Indices: 8047654--8047789 Score: 227
Period size: 51 Copynumber: 2.7 Consensus size: 51
8047644 AGCTACTAAG
* * *
8047654 GATGAGGCACCAGTAGCTACCCCTGCAGCAACAGAAGCCCCTGCTAATGAT
1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT
* *
8047705 GATGAGGCACCAGTAGCCACTCCTGCAGCACCAGAAGCCCCTGCTGATGAT
1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT
8047756 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAG
1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAG
8047790 TTGCAGGTGG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 80 1.00
ACGTcount: A:0.28, C:0.32, G:0.25, T:0.15
Consensus pattern (51 bp):
GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT
Found at i:8048939 original size:8 final size:8
Alignment explanation
Indices: 8048917--8048956 Score: 62
Period size: 9 Copynumber: 4.8 Consensus size: 8
8048907 TTTAATCTCC
8048917 TTTAAAAA
1 TTTAAAAA
8048925 TTATAAAAA
1 TT-TAAAAA
8048934 TTTAAAAA
1 TTTAAAAA
8048942 TTATAAAAA
1 TT-TAAAAA
8048951 TTTAAA
1 TTTAAA
8048957 TTAGTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 14 0.47
9 16 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TTTAAAAA
Found at i:8048939 original size:17 final size:17
Alignment explanation
Indices: 8048917--8048956 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
8048907 TTTAATCTCC
8048917 TTTAAAAATTATAAAAA
1 TTTAAAAATTATAAAAA
8048934 TTTAAAAATTATAAAAA
1 TTTAAAAATTATAAAAA
8048951 TTTAAA
1 TTTAAA
8048957 TTAGTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAAAAATTATAAAAA
Found at i:8049977 original size:17 final size:17
Alignment explanation
Indices: 8049955--8050001 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8049945 TAATTAATTA
8049955 TTTTAATGACTTT-TAAT
1 TTTTAATGA-TTTATAAT
*
8049972 TTTTAATTATTTATAAT
1 TTTTAATGATTTATAAT
*
8049989 TTTTAATTATTTA
1 TTTTAATGATTTA
8050002 ATGACTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 3 0.11
17 25 0.89
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTAATGATTTATAAT
Found at i:8050063 original size:29 final size:30
Alignment explanation
Indices: 8050031--8050095 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
8050021 TTATACTTTT
8050031 AAATTA-TTTTA-ATGACTTTTAATTTTTAA
1 AAATTACTTTTATAT-ACTTTTAATTTTTAA
**
8050060 AAATTACTTTTATATTTTTTTAATTTTTAA
1 AAATTACTTTTATATACTTTTAATTTTTAA
8050090 AAATTA
1 AAATTA
8050096 ACTAAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 6 0.19
30 24 0.75
31 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (30 bp):
AAATTACTTTTATATACTTTTAATTTTTAA
Found at i:8050084 original size:20 final size:19
Alignment explanation
Indices: 8050024--8050084 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
8050014 CTTCTATTTA
*
8050024 TACTTTTAAATTATTTTAAT
1 TACTTTT-AATTTTTTTAAT
* **
8050044 GACTTTTAATTTTTAAAAAT
1 TACTTTTAATTTTT-TTAAT
8050064 TACTTTTATATTTTTTTAAT
1 TACTTTTA-ATTTTTTTAAT
8050084 T
1 T
8050085 TTTAAAAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 6 0.19
20 20 0.62
21 6 0.19
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (19 bp):
TACTTTTAATTTTTTTAAT
Found at i:8050105 original size:30 final size:30
Alignment explanation
Indices: 8050047--8050105 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8050037 TTTTAATGAC
**
8050047 TTTTAATTTTTAAAAATTACTTTTATATTT
1 TTTTAATTTTTAAAAATTACTTAAATATTT
8050077 TTTTAATTTTTAAAAATTAAC-TAAATATT
1 TTTTAATTTTTAAAAATT-ACTTAAATATT
8050106 GATGTGTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTAATTTTTAAAAATTACTTAAATATTT
Found at i:8050799 original size:15 final size:15
Alignment explanation
Indices: 8050752--8050799 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
8050742 TTTGAGAAAG
*
8050752 TTTTATTCTTTTGATT
1 TTTTATT-TTTTTATT
**
8050768 TACTATTTTTTTATT
1 TTTTATTTTTTTATT
8050783 TTTTA-TTTTTTATT
1 TTTTATTTTTTTATT
8050797 TTT
1 TTT
8050800 AAAAATGTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 12 0.44
15 10 0.37
16 5 0.19
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTTATTTTTTTATT
Found at i:8050800 original size:6 final size:7
Alignment explanation
Indices: 8050774--8050799 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8050764 GATTTACTAT
8050774 TTTTTTA
1 TTTTTTA
8050781 TTTTTTA
1 TTTTTTA
8050788 TTTTTTA
1 TTTTTTA
8050795 TTTTT
1 TTTTT
8050800 AAAAATGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:8051879 original size:57 final size:58
Alignment explanation
Indices: 8051802--8051952 Score: 179
Period size: 57 Copynumber: 2.7 Consensus size: 58
8051792 GGGTGGTCAG
* * * *
8051802 CAGTGGCTGCAC-CAG---CACCAGGGTTGGCAACATTGGGTCCTGTGGGAATGGGAC
1 CAGTGGCTGCACGCAGCCACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
* *
8051856 CAGTGGCTGCA-GCA-CCTACACCAGGGTTCCCAACAGTAGTTCCTGTGGGAACGGGAC
1 CAGTGGCTGCACGCAGCC-ACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
8051913 CAGTGGCTGCACCTGCAGCCACACCAGGGTTGCCAACAGT
1 CAGTGGCTGCA-C-GCAGCCACACCAGGGTTGCCAACAGT
8051953 GGCTCCAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
54 13 0.16
57 44 0.54
60 22 0.27
61 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (58 bp):
CAGTGGCTGCACGCAGCCACACCAGGGTTGCCAACAGTAGGTCCTGTGGGAACGGGAC
Found at i:8057585 original size:31 final size:31
Alignment explanation
Indices: 8057544--8057606 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
8057534 ATCATTGAAT
* *
8057544 TATTCTAAAGTTTTAATTTAAGTCACTAAAC
1 TATTCAAAAGTTTTAATTTAAGCCACTAAAC
* *
8057575 TATTCAAAAGTTTTTATTTAAGCCATTAAAC
1 TATTCAAAAGTTTTAATTTAAGCCACTAAAC
8057606 T
1 T
8057607 GTCAGGGCGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (31 bp):
TATTCAAAAGTTTTAATTTAAGCCACTAAAC
Found at i:8059594 original size:22 final size:24
Alignment explanation
Indices: 8059558--8059601 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8059548 AACCGATCCG
*
8059558 ATATCTCTATTATATTGATATAAA
1 ATATCTCTATTATATTAATATAAA
8059582 ATAT-TCTA-TATATTAATATA
1 ATATCTCTATTATATTAATATA
8059602 TACATTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 4 0.21
24 4 0.21
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATCTCTATTATATTAATATAAA
Found at i:8060633 original size:16 final size:15
Alignment explanation
Indices: 8060592--8060642 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
8060582 GAAAAATTAT
*
8060592 ATTTTCATCCTTCTA
1 ATTTTCATCCTTCAA
*
8060607 ATTCTTTATCCATTCAA
1 ATT-TTCATCC-TTCAA
*
8060624 ATTTTCATCCTTCCA
1 ATTTTCATCCTTCAA
8060639 ATTT
1 ATTT
8060643 CCTTTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 11 0.37
16 12 0.40
17 7 0.23
ACGTcount: A:0.24, C:0.25, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTTCATCCTTCAA
Found at i:8069882 original size:19 final size:19
Alignment explanation
Indices: 8069860--8069903 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8069850 AATTATTGAA
8069860 TTAATTGTT-AATTTTAATT
1 TTAATTGTTAAATTTTAA-T
8069879 TTAA-TGTTAAAATTTTAAT
1 TTAATTGTT-AAATTTTAAT
8069898 TTAATT
1 TTAATT
8069904 TTTTTAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTAATTGTTAAATTTTAAT
Found at i:8072944 original size:4 final size:4
Alignment explanation
Indices: 8072929--8072965 Score: 56
Period size: 4 Copynumber: 8.8 Consensus size: 4
8072919 CCTCATCCTC
8072929 AATT ATATT AATT AATT AATT AATT AATT AATAT AAT
1 AATT A-ATT AATT AATT AATT AATT AATT AAT-T AAT
8072966 CTTTGAACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 23 0.74
5 8 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
AATT
Found at i:8081755 original size:18 final size:17
Alignment explanation
Indices: 8081734--8081767 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
8081724 ATTTGATTAA
8081734 ATAAATTATTAAAAATTT
1 ATAAATT-TTAAAAATTT
8081752 ATAAATTTTAAAAATT
1 ATAAATTTTAAAAATT
8081768 ATTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAATTTTAAAAATTT
Found at i:8084195 original size:14 final size:16
Alignment explanation
Indices: 8084171--8084202 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8084161 ATAGAAATAT
8084171 AATATAATA-TTAAAA
1 AATATAATATTTAAAA
8084186 AATA-AATATTTAAAA
1 AATATAATATTTAAAA
8084201 AA
1 AA
8084203 AGAGACACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATATAATATTTAAAA
Found at i:8094751 original size:8 final size:8
Alignment explanation
Indices: 8094738--8094765 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8094728 GGAAACACTT
8094738 AAAACACA
1 AAAACACA
8094746 AAAACACA
1 AAAACACA
8094754 AAAACACA
1 AAAACACA
8094762 AAAA
1 AAAA
8094766 TTATTAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAACACA
Found at i:8095651 original size:31 final size:31
Alignment explanation
Indices: 8095585--8095651 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
8095575 CATTAAAAAT
* **
8095585 ATCAAGTTGACTCTTTTTCAAAAGGCTGATG
1 ATCAAGTTGACTATTTTTCAAAAGGCTGAAA
* *
8095616 ATCAAGTTTGATTATTTTT-AAAAGGTTGAAA
1 ATCAAG-TTGACTATTTTTCAAAAGGCTGAAA
8095647 ATCAA
1 ATCAA
8095652 ATTTAATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.37
Consensus pattern (31 bp):
ATCAAGTTGACTATTTTTCAAAAGGCTGAAA
Found at i:8101631 original size:4 final size:4
Alignment explanation
Indices: 8101622--8101652 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
8101612 CCAAACACAA
8101622 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
8101653 AACCTTGGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8101831 original size:22 final size:20
Alignment explanation
Indices: 8101806--8101877 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 20
8101796 GGGTTTTTGG
8101806 TTTTTTGGAGGAGGATTGTTCT
1 TTTTTTGGAGGAGG-TT-TTCT
* *
8101828 TTTTTTAGAGGAGGTTTTTT
1 TTTTTTGGAGGAGGTTTTCT
* * *
8101848 TGTTTTTGGAGGTGTTTTTTT
1 T-TTTTTGGAGGAGGTTTTCT
8101869 TTTTTTGGA
1 TTTTTTGGA
8101878 AAGAAGGTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
20 12 0.27
21 19 0.43
22 13 0.30
ACGTcount: A:0.11, C:0.01, G:0.28, T:0.60
Consensus pattern (20 bp):
TTTTTTGGAGGAGGTTTTCT
Found at i:8101858 original size:18 final size:18
Alignment explanation
Indices: 8101837--8101872 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8101827 TTTTTTTAGA
8101837 GGAGGT-TTTTTTGTTTTT
1 GGAGGTGTTTTTT-TTTTT
8101855 GGAGGTGTTTTTTTTTTT
1 GGAGGTGTTTTTTTTTTT
8101873 TTGGAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.06, C:0.00, G:0.28, T:0.67
Consensus pattern (18 bp):
GGAGGTGTTTTTTTTTTT
Found at i:8102237 original size:3 final size:3
Alignment explanation
Indices: 8102203--8102295 Score: 65
Period size: 3 Copynumber: 31.3 Consensus size: 3
8102193 GAGCTTTGTT
* *
8102203 TTA TTT TTA TT- TTA TT- TTA TTA TT- TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
8102245 TTA TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA
1 TTA TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA
8102290 -TA TTA T
1 TTA TTA T
8102296 ATATGCCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
2 11 0.15
3 53 0.73
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8102249 original size:36 final size:38
Alignment explanation
Indices: 8102204--8102293 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 38
8102194 AGCTTTGTTT
* *
8102204 TATTTTTATTTTATTT-T-AT-TATTTTACTATTATTTA
1 TATTATTATTTTATTTCTCATGTA-TATACTATTATTTA
*
8102240 TATTATTATTATTATTTCTCATGTATATATTATTATTTA
1 TATTATTATT-TTATTTCTCATGTATATACTATTATTTA
*
8102279 TATTATTATTATATT
1 TATTATTATTTTATT
8102294 ATATATGCCC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
36 9 0.20
37 6 0.13
38 5 0.11
39 24 0.52
40 2 0.04
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (38 bp):
TATTATTATTTTATTTCTCATGTATATACTATTATTTA
Found at i:8102270 original size:21 final size:18
Alignment explanation
Indices: 8102204--8102299 Score: 90
Period size: 18 Copynumber: 5.2 Consensus size: 18
8102194 AGCTTTGTTT
*
8102204 TATTTTTATT-TTATTT-
1 TATTATTATTATTATTTA
*
8102220 TATTATTTTACTATTATTTA
1 TATTA--TTATTATTATTTA
*
8102240 TATTATTATTATTATTTC
1 TATTATTATTATTATTTA
8102258 TCATGTATATATTATTATTTA
1 T-AT-TAT-TATTATTATTTA
8102279 TATTATTATTA-TATTATA
1 TATTATTATTATTATT-TA
8102297 TAT
1 TAT
8102300 GCCCTCTCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
16 4 0.06
17 4 0.06
18 26 0.39
19 11 0.16
20 10 0.15
21 12 0.18
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TATTATTATTATTATTTA
Found at i:8102353 original size:40 final size:40
Alignment explanation
Indices: 8102267--8102378 Score: 99
Period size: 40 Copynumber: 2.9 Consensus size: 40
8102257 CTCATGTATA
* *
8102267 TATTA-TTATTTATATTATTATTATATTATATATGCCCTC
1 TATTATTTATTTATATTATTACTATATTATATATGACCTC
* * *
8102306 TCA-TATTTATTTATATTATTACTATCATTAT-TGTTACTTC
1 T-ATTATTTATTTATATTATTACTAT-ATTATATATGACCTC
* *
8102346 TATTATTT-TTTAT-TTCTGACTACTATTATATAT
1 TATTATTTATTTATATTATTACTA-TATTATATAT
8102379 ATATATATGT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
38 12 0.20
39 12 0.20
40 30 0.51
41 5 0.08
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (40 bp):
TATTATTTATTTATATTATTACTATATTATATATGACCTC
Found at i:8105129 original size:19 final size:19
Alignment explanation
Indices: 8105107--8105153 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
8105097 CTTCCTTTCT
8105107 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
8105126 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
8105145 TTTGCATTA
1 TTTGCATTA
8105154 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:8107951 original size:6 final size:6
Alignment explanation
Indices: 8107936--8107977 Score: 75
Period size: 6 Copynumber: 7.0 Consensus size: 6
8107926 GGAGTTATAT
*
8107936 GGCAAA GGCAAT GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
8107978 AAAAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.33, T:0.02
Consensus pattern (6 bp):
GGCAAA
Found at i:8109269 original size:66 final size:66
Alignment explanation
Indices: 8109169--8109295 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
8109159 CATTCATATA
*
8109169 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
8109234 C
66 C
*
8109235 ATAACACATCTGGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
8109296 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:8109423 original size:45 final size:45
Alignment explanation
Indices: 8109359--8110079 Score: 526
Period size: 45 Copynumber: 16.4 Consensus size: 45
8109349 ATTCACAAGC
*
8109359 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* ** *
8109404 CTTAACCCCCTAAGCAGTAGGGAAACA-AATCGAAGA-TGA-AGAGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGA-T
* * * * * *
8109448 CTTAAACCCCTAATCGGTAGGGTAACAGAC-CAA-A-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * * * * **
8109490 CTTATCCCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGAT
* * *
8109533 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-T
*
8109577 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * * * * * **
8109622 CTTAACCCCCTAAGCAGTAGGGAAATA-GATCAAAGA-TGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGAT
* * * * *
8109665 CTTTAACCCCCTAAACAGTAGGGTAACAAGCCG-A-ATTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * *
8109709 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACATAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * * * * * * **
8109754 CTTAACCCCCTAAGCAGTAGGGAAACA-GATAAAAAAATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGAT
* * * *
8109798 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
*
8109842 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * * * * **
8109887 CTTAACCCCCTAAGCAGTAGGGAAACA-GATCAAAGA-TGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGAT
* * * *
8109930 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* *
8109974 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * *
8110019 CTTAACCCCCTAACCAGAAGGGTAACAGGTTG-A-ATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
*
8110062 CTTAACCCCTTAAGCAGT
1 CTTAACCCCCTAAGCAGT
8110080 TGGGAAATAG
Statistics
Matches: 522, Mismatches: 119, Indels: 72
0.73 0.17 0.10
Matches are distributed among these distances:
42 28 0.05
43 162 0.31
44 123 0.24
45 207 0.40
46 2 0.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (45 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
Found at i:8109510 original size:86 final size:88
Alignment explanation
Indices: 8109359--8110045 Score: 397
Period size: 88 Copynumber: 7.8 Consensus size: 88
8109349 ATTCACAAGC
* *
8109359 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTCAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
8109424 GGAAACAAATCGAAGATGAAGAGT
66 GGAAACAAATCGAAGATGAAG-GG
* * * *
8109448 CTTAAACCCCTAATCGGTAGGGTAACAGAC-CAA-A-TTGCAGATCTTATCCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTCAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
8109510 GGAAACAGATCGAAGATGATGGG
66 GGAAACAAATCGAAGATGAAGGG
* * * *
8109533 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGC-CGA-ATTTACA-AGCCTTAAACCCCTAAGCAG
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGA-CTCAAGATTTACAGA-TCTTAACCCCCTAAGCAG
* ** * **
8109594 TAGGGTAAC-AGGCTGAAGATTTACAGAT
63 TAGGGAAACAAATC-GAAGA-TGA-AGGG
* * * * * ** *
8109622 CTTAACCCCCTAAGCAGTAGGGAAATAGA-TCAAAGA-TGA-TGGGCTTTAACCCCCTAAACAGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTC-AAGATTTACAGATC-TTAACCCCCTAAGCAGT
* ** * * ***
8109684 AGGGTAACAAGCCGAA-TTTACAAAC
64 AGGGAAACAAATCGAAGATGA-AGGG
* * *
8109709 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACATATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTCAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* ** * *
8109774 GGAAACAGATAAAAAAATGATGGG
66 GGAAACAAAT-CGAAGATGAAGGG
* * * * *
8109798 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGC-CGA-ATTTACAAACCTTAAACCCCTAAGCAGT
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGA-CTCAAGATTTACAGATCTTAACCCCCTAAGCAGT
* ** * **
8109860 AGGGTAAC-AGGCTGAAGATTTACAGAT
64 AGGGAAACAAATC-GAAGA-TGA-AGGG
* * * * **
8109887 CTTAACCCCCTAAGCAGTAGGGAAACAGA-TCAAAGA-TGA-TGGGCTTTAACCCCCTAAGCAGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTC-AAGATTTACAGATC-TTAACCCCCTAAGCAGT
* ** * * ***
8109949 AGGGTAACAAGCCGAA-TTTACAAAC
64 AGGGAAACAAATCGAAGATGA-AGGG
* * * * *
8109974 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGAAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTCAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
8110039 GGTAACA
66 GGAAACA
8110046 GGTTGAATTT
Statistics
Matches: 463, Mismatches: 102, Indels: 67
0.73 0.16 0.11
Matches are distributed among these distances:
85 3 0.01
86 74 0.16
87 107 0.23
88 145 0.31
89 98 0.21
90 36 0.08
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.20
Consensus pattern (88 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACTCAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAAATCGAAGATGAAGGG
Found at i:8109643 original size:132 final size:132
Alignment explanation
Indices: 8109448--8110046 Score: 1006
Period size: 132 Copynumber: 4.6 Consensus size: 132
8109438 GATGAAGAGT
* * * * * *
8109448 CTTAAACCCCTAATCGGTAGGGTAACAGAC-CAA-A-TTGCAGATCTTATCCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
8109510 GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
*
8109575 GC
131 AC
8109577 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
8109642 GGAAATAGATCAAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
8109707 AC
131 AC
* *
8109709 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACATATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
8109774 GGAAACAGATAAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGAT-CAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
8109839 AAC
130 AAC
8109842 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
8109907 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
8109972 AC
131 AC
* * *
8109974 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGAAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
8110039 GGTAACAG
66 GGAAACAG
8110047 GTTGAATTTA
Statistics
Matches: 442, Mismatches: 24, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
129 27 0.06
130 2 0.00
131 1 0.00
132 285 0.64
133 127 0.29
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (132 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
AC
Found at i:8109836 original size:265 final size:264
Alignment explanation
Indices: 8109448--8110046 Score: 1006
Period size: 265 Copynumber: 2.3 Consensus size: 264
8109438 GATGAAGAGT
* * * * * * *
8109448 CTTAAACCCCTAATCGGTAGGGTAACAGAC-CAA-A-TTGCAGATCTTATCCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
** *
8109510 GGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
*
8109575 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
131 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
*
8109640 AGGGAAATAGATCAAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTAC
196 AGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTAC
8109705 AAAC
261 AAAC
*
8109709 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACATATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
8109774 GGAAACAGATAAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGAT-AAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
8109839 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
130 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
*
8109904 TAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTA
195 TAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTA
8109969 CAAAC
260 CAAAC
* * *
8109974 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGAAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
*
8110039 GGTAACAG
66 GGAAACAG
8110047 GTTGAATTTA
Statistics
Matches: 316, Mismatches: 18, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
261 27 0.09
262 2 0.01
263 1 0.00
264 35 0.11
265 251 0.79
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (264 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAAATCTTAACCCCCTAAGCAGTAG
GGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
ACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
AGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTAC
AAAC
Found at i:8110079 original size:175 final size:175
Alignment explanation
Indices: 8109800--8110129 Score: 493
Period size: 175 Copynumber: 1.9 Consensus size: 175
8109790 ATGATGGGCT
* * *
8109800 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGT
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAACCAGAAGGGT
8109865 AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG
66 AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG
* *
8109930 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
131 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
* * * *
8109975 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGAAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAACCTTAAACCCCTAACCAGAAGG
* * * * *
8110040 GTAACAGGTTG-A-ATTTACAGATCTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATG
64 GTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATG
*
8110103 GGCCTTAAACCCCTAAGTAGTAGGGTA
129 GGCCTTAAACCCCTAAGCAGTAGGGTA
8110130 CCAGGCTGGA
Statistics
Matches: 138, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
175 99 0.72
176 2 0.01
177 37 0.27
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (175 bp):
TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAACCAGAAGGGT
AACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG
CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
Found at i:8110146 original size:88 final size:86
Alignment explanation
Indices: 8109575--8110146 Score: 393
Period size: 88 Copynumber: 6.5 Consensus size: 86
8109565 GAATTTACAA
8109575 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-A-TTACAGATCTTAA-CCCCTAAGCAGT
* *
8109640 AGGGAAATAGATCAAAGATGATGG
63 AGGGAAACAGATCGAAGATGATGG
* * * * * * * *
8109664 GCTTTAACCCCCTAAACAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTT-AACCCCTAAGCAGTAG
* * * * ***
8109729 GGTAACAG-GCTAAAGATTTACAT
65 GGAAACAGATC-GAAGA-TGATGG
** * * * * *
8109752 ATCTTAACCCCCTAAGCAGTAGGGAAACA-GAT-AAA-AAAATGATGGGCTTTAACCCCCTAAGC
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTACA-GAT---C-TTAA-CCCCTAAGC
* * * * ***
8109814 AGTAGGGTAACA-AGCCGAA-TTTACAA
60 AGTAGGGAAACAGA-TCGAAGATGATGG
*
8109840 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-A-TTACAGATCTTAA-CCCCTAAGCAGT
*
8109905 AGGGAAACAGATCAAAGATGATGG
63 AGGGAAACAGATCGAAGATGATGG
* * * * * * *
8109929 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTT-AACCCCTAAGCAGTAG
* * * ***
8109994 GGTAACAG-GCTGAAGATTTACAA
65 GGAAACAGATC-GAAGA-TGATGG
** * * * * * *
8110017 ATCTTAACCCCCTAACCAGAAGGGTAACAGGTTGAATTTACAGATCTTAACCCCTTAAGCAGTTG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTAACCCC-TAAGCAGTAG
*
8110082 GGAAATAGATCGAAGATGATGG
65 GGAAACAGATCGAAGATGATGG
* *
8110104 GCCTTAAACCCCTAAGTAGTAGGGTACCAGGCTGGAAATTACA
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAATTACA
8110147 AATTTCTTTT
Statistics
Matches: 372, Mismatches: 87, Indels: 49
0.73 0.17 0.10
Matches are distributed among these distances:
85 2 0.01
86 5 0.01
87 102 0.27
88 157 0.42
89 72 0.19
90 27 0.07
91 2 0.01
92 3 0.01
93 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (86 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTAACCCCTAAGCAGTAGG
GAAACAGATCGAAGATGATGG
Found at i:8110268 original size:68 final size:68
Alignment explanation
Indices: 8110151--8110346 Score: 270
Period size: 68 Copynumber: 2.9 Consensus size: 68
8110141 ATTACAAATT
*
8110151 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
8110214 AAGA
66 AA-A
* * * *
8110218 TCTTTTCTTCCTGAAATGGCGTTAGAGCGGCTAAAAACCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
8110283 AAA
66 AAA
* * ** **
8110286 CCTCTTCTTCCAAAAATGGCATTGGAAAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTT
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTT
8110347 TAGTGGAAGA
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
67 6 0.05
68 104 0.93
69 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
AAA
Found at i:8110474 original size:44 final size:43
Alignment explanation
Indices: 8110403--8111288 Score: 618
Period size: 44 Copynumber: 20.2 Consensus size: 43
8110393 GGAGCAGACT
* * * * *
8110403 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAACAGATC
1 GAAGATATCAGAT-TGGCATCCCTGTGCTTATAG-GGAACAGATC
* * * *
8110448 CAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGAAACA-AGTT
1 GAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * * *
8110491 GAAAACATCAGATTTGGCAACCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * * * *
8110535 GAAAACAACGGATTTGGCATCCCTGTGCTTATAGGGAACGGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGATC
* * *
8110579 GACGATAGCAGATTTGGCATCCCTGTGCTTA-CGGTGAAGCAGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGG-GAA-CAGATC
* *
8110624 GAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * *
8110667 GAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGATC
* * * * *
8110711 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAGCAGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAA-CAGATC
* * *
8110756 GAAGATTTCA-ACATGGCATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * * *
8110799 GAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGATC
* * * * * *
8110843 GAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATC
1 GAAGATATCAGAT-TGGCATCCCTGTGCTTATAGGGAA-CAGATC
* * *
8110888 AAAGATTTCAGCA-TGGCATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * *
8110931 GAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGATC
* * * * *
8110975 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC
1 GAAGATATCAGAT-TGGCATCCCTGTGCTTATAGGGAA-CAGATC
* * * *
8111020 AAAGATTTCAGCA-TGGCATCCCTATGCTTATAGGGAACA-AGTT
1 GAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * *
8111063 GAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * *
8111107 GAA-ACAACAGATTTGGCATCCCTGTG-TTAATAGGGAACGGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTT-ATAGGGAACAGATC
* * * * * *
8111150 GAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGAAGTAGATC
1 GAAGATATCAGAT-TGGCATCCCTGTGCTTATAGGGAA-CAGATC
* * *
8111195 GAAGATTTCAGCA-TGACATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATATCAG-ATTGGCATCCCTGTGCTTATAGGGAACAGA-TC
* * * * *
8111238 GAAAACAGCAGATTTGGCATCCTTGTGCTTATAGGGAACGGATC
1 GAAGATATCAGA-TTGGCATCCCTGTGCTTATAGGGAACAGATC
8111282 GAAGATA
1 GAAGATA
8111289 GCAAATCTGA
Statistics
Matches: 671, Mismatches: 129, Indels: 83
0.76 0.15 0.09
Matches are distributed among these distances:
42 13 0.02
43 102 0.15
44 470 0.70
45 81 0.12
46 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (43 bp):
GAAGATATCAGATTGGCATCCCTGTGCTTATAGGGAACAGATC
Found at i:8110661 original size:132 final size:132
Alignment explanation
Indices: 8110505--8111103 Score: 1027
Period size: 132 Copynumber: 4.5 Consensus size: 132
8110495 ACATCAGATT
* * *
8110505 TGGCAACCCTGTGCTTATAGGGAACAAGTTGAAAACAACGGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
** * * * * * *
8110570 GAACGGATCGACGATAGCAGATTTGGCATCCCTGTGCTTACGGTGAAGCAGATCGAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
8110635 CA
131 CA
8110637 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * *
8110702 GAACAGATCGAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAA
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
8110767 CA
131 CA
8110769 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
*
8110834 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
8110899 CA
131 CA
*
8110901 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
8110966 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
8111031 CA
131 CA
* *
8111033 TGGCATCCCTATGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
8111098 GAACAA
66 GAACAA
8111104 GTTGAAACAA
Statistics
Matches: 450, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 450 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CA
Found at i:8111167 original size:175 final size:176
Alignment explanation
Indices: 8110901--8111276 Score: 630
Period size: 175 Copynumber: 2.1 Consensus size: 176
8110891 GATTTCAGCA
*
8110901 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
*
8110966 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
* *
8111031 CATGGCATCCCTATGCTTATAGGGAACAAGTTGAAAACATCAGATT
131 CATGACATCCCTATGCTTATAGGGAACAAGTTGAAAACAGCAGATT
8111077 TGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAACAACAGATTTGGCATCCCTGTG-TTAATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTT-ATAG
** * * *
8111140 GGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGAAGTAGATCGAAGATTTCA
65 GGAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCA
*
8111205 GCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
130 GCATGACATCCCTATGCTTATAGGGAACAAGTTGAAAACAGCAGATT
*
8111252 TGGCATCCTTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
8111277 GGATCGAAGA
Statistics
Matches: 188, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
174 2 0.01
175 155 0.82
176 31 0.16
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (176 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CATGACATCCCTATGCTTATAGGGAACAAGTTGAAAACAGCAGATT
Found at i:8111235 original size:307 final size:307
Alignment explanation
Indices: 8110769--8111324 Score: 945
Period size: 307 Copynumber: 1.8 Consensus size: 307
8110759 GATTTCAACA
*
8110769 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
8110834 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
* *
8110899 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATA
131 CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
* *
8110964 GGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTC
196 GGGAACAAATCGAAGATAGCAAATCTGACATTCCTGAG-TTACAGTGAAGCAGATCAAAGATTTC
8111029 AGCATGGCATCCCTATGCTTATAGGGAACAAGTTGAAAACATCAGATT
260 AGCATGGCATCCCTATGCTTATAGGGAACAAGTTGAAAACATCAGATT
8111077 TGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAACAACAGATTTGGCATCCCTGTG-TTAATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTT-ATAG
** * * *
8111140 GGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTATAGTGAAGTAGATCGAAGATTTCA
65 GGAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCA
*
8111205 GCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCTTGTGCTTAT
130 GCATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTAT
** * *
8111270 AGGGAACGGATCGAAGATAGCAAATCTGACCTTCCTGAGTTGCAGTGAAGCAGAT
195 AGGGAACAAATCGAAGATAGCAAATCTGACATTCCTGAGTTACAGTGAAGCAGAT
8111325 TGAAGCCGTC
Statistics
Matches: 232, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
306 17 0.07
307 184 0.79
308 31 0.13
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (307 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
GGGAACAAATCGAAGATAGCAAATCTGACATTCCTGAGTTACAGTGAAGCAGATCAAAGATTTCA
GCATGGCATCCCTATGCTTATAGGGAACAAGTTGAAAACATCAGATT
Done.