Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 320 of 444
Found at i:92405335 original size:140 final size:139
Alignment explanation
Indices: 92405025--92405343 Score: 409
Period size: 140 Copynumber: 2.3 Consensus size: 139
92405015 CATAGGGTAT
* *
92405025 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGGCGATGCCATGTCC
* * *
92405090 TAGACATGTCTTACACTGGCTGACATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAG
66 CAGACATGTCTTACACTAGCTCACATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAG
92405155 CTCTCATCTC
131 CTCTCA-CTC
92405165 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTAAT-C-TCAATGGCGATG-CATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ATCCATCAA-GGCGATGCCATG
* * * *
92405227 TCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCTGATGCTATGTCCTAGACATGGTCTTAC
63 TCCCAGACATGTCTTACACTAGCTCACATCTCAAGGCCGATGC-ATGTCCCAGACAT-GTCTTAC
*
92405292 ACTGGCTCTCA-T-
126 ACTAGCTCTCACTC
*
92405304 AATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACATTGGC
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
92405344 ACACAAATAA
Statistics
Matches: 160, Mismatches: 11, Indels: 16
0.86 0.06 0.09
Matches are distributed among these distances:
139 2 0.01
140 98 0.61
141 34 0.21
142 26 0.16
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (139 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGGCGATGCCATGTCC
CAGACATGTCTTACACTAGCTCACATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAG
CTCTCACTC
Found at i:92408365 original size:40 final size:40
Alignment explanation
Indices: 92408307--92408560 Score: 268
Period size: 40 Copynumber: 6.5 Consensus size: 40
92408297 AACCGAGTCT
* * * * *
92408307 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
92408346 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
92408386 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
92408426 CTTCGGG---TCGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
92408463 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* *
92408503 CTTCGGGACTTAGCCC-AAGTATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGA-TATAATCACTAGCACAAATGC
92408543 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
92408561 GTATCATTCA
Statistics
Matches: 181, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
37 31 0.17
38 1 0.01
39 10 0.06
40 139 0.77
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:92408475 original size:77 final size:78
Alignment explanation
Indices: 92408380--92408560 Score: 251
Period size: 77 Copynumber: 2.3 Consensus size: 78
92408370 TAACTTGCAC
* * * * *
92408380 AAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGG-TCGCCC-GGA
1 AAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGATAGCCCAAG-
92408442 TATAATCACTAGCAT
64 TATAATCACTAGCAT
*
92408457 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAAG
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGA--TAGCCCAAG
92408522 TATAATCACTAGCAT
64 TATAATCACTAGCAT
92408537 AAATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
92408561 GTATCATTCA
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
77 47 0.51
78 1 0.01
80 44 0.47
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGATAGCCCAAGTA
TAATCACTAGCAT
Found at i:92408526 original size:117 final size:117
Alignment explanation
Indices: 92408320--92408549 Score: 275
Period size: 117 Copynumber: 2.0 Consensus size: 117
92408310 CGGAATTTAG
* * * ** *
92408320 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
* * * *
92408385 CCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCGC
66 CCTTCGGGACTTAGCCCAGATATAATC-ACTAGCACAAATGCCTTCGGGTCGC
* * * * * *
92408437 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
*
92408502 CCTTCGGGACTTAGCCCA-AGTATAATCACTAGCATAAATGCCTTCGGG
66 CCTTCGGGACTTAGCCCAGA-TATAATCACTAGCACAAATGCCTTCGGG
92408550 ACTTAGCCCG
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
116 1 0.01
117 92 0.98
118 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (117 bp):
CCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGTCGC
Found at i:92411597 original size:41 final size:41
Alignment explanation
Indices: 92411550--92411650 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 41
92411540 TCAAATATTG
* *
92411550 TCCTTTTCAACCTTTTTATTTGATATCCTTTTCGGAT-ATCA
1 TCCTTTTCAACCTTTTCATTTGATATCCTTTTCAGATAAT-A
* *
92411591 TCCTTTTCAACCTTTTCATTTGTTATCCTTTTCAGATAATT
1 TCCTTTTCAACCTTTTCATTTGATATCCTTTTCAGATAATA
*
92411632 TTCTTTTCAACCTTTTCAT
1 TCCTTTTCAACCTTTTCAT
92411651 AGATTCGGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
41 52 0.96
42 2 0.04
ACGTcount: A:0.19, C:0.23, G:0.05, T:0.53
Consensus pattern (41 bp):
TCCTTTTCAACCTTTTCATTTGATATCCTTTTCAGATAATA
Found at i:92424585 original size:18 final size:18
Alignment explanation
Indices: 92424555--92424606 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
92424545 ATACGGCATA
*
92424555 TTGCATGG-GATGCATGG
1 TTGCATGGAAATGCATGG
92424572 TTCGCAT-GAAATGCATAGG
1 TT-GCATGGAAATGCAT-GG
92424591 TTGCATGGAAAT-CATG
1 TTGCATGGAAATGCATG
92424607 AAATGCATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 4 0.13
18 17 0.57
19 9 0.30
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (18 bp):
TTGCATGGAAATGCATGG
Found at i:92424633 original size:27 final size:26
Alignment explanation
Indices: 92424576--92424642 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
92424566 GCATGGTTCG
*
92424576 CATGAAATGCATAGGTTGCATGGAAAT
1 CATGAAATGCAT-GGTTGCATGGAAAA
*
92424603 CATGAAATGCATGTTTTGCAT-GAAACA
1 CATGAAATGCATG-GTTGCATGGAAA-A
* *
92424630 CATGGAGTGCATG
1 CATGAAATGCATG
92424643 CCTAAACTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (26 bp):
CATGAAATGCATGGTTGCATGGAAAA
Found at i:92425539 original size:58 final size:58
Alignment explanation
Indices: 92425449--92425566 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
92425439 CAGGCGACCC
*
92425449 AGAACGGTACACATGTCCAGCATGCCCGAGGCTGACTTAGAATGTCAGTCCTGTGAAT
1 AGAACGGTACACATGTCCAGCATGCCCGAGGCTGACTTAGAATGTCAGTCCTATGAAT
*
92425507 AGAACGGTACACATGTCCAGCATGCCCGAGGCTTACTTAGAATGTCAGTCCTATGAAT
1 AGAACGGTACACATGTCCAGCATGCCCGAGGCTGACTTAGAATGTCAGTCCTATGAAT
92425565 AG
1 AG
92425567 TGGGGTCAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (58 bp):
AGAACGGTACACATGTCCAGCATGCCCGAGGCTGACTTAGAATGTCAGTCCTATGAAT
Found at i:92432182 original size:140 final size:141
Alignment explanation
Indices: 92432003--92432855 Score: 700
Period size: 140 Copynumber: 6.1 Consensus size: 141
92431993 AATATTTCAT
* * * * * * *
92432003 CCCCAAAACAGTTAGTGCGAGCTTAAGCTTCTAGTTGTAATTTTAAGGCTTACG-A-GTTCAATA
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTT-CGTAGGTTCAATA
* * * * *
92432066 CCATAACCCTCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTT
65 CCGTAACCCTCGAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTT
* * *
92432131 CAATGCCACAGC
130 CAATACCGCAAC
* * *
92432143 CCCCAAAATAGTTA-CTGAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTT-GCAGGTTCAATA
1 CCCCAAAATAGTTAGC-GAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATA
* * * *
92432206 CTGTAGCCC-CTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCACAGGT
65 CCGTAACCCTC-GAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGT
** *
92432270 TCAATATTGCAGC
129 TCAATACCGCAAC
* * * *
92432283 CCCC-AAATAATTAGCGCGAGCGT-AAGCTCCCAGCTGTAGTTTTAAGGC-TCGCAGGTTCAATA
1 CCCCAAAATAGTTAGCGAGAGC-TCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATA
* * * * * * * * * *
92432345 CTG-CAGCCTCGAAATAGTTAGCGCAAGCTCCAGATCCTAACTATAACTTTAAGGCTCGCATGTT
65 CCGTAACCCTCGAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTT
**
92432409 CAATACCATAAC
130 CAATACCGCAAC
** * * *
92432421 CCCTGAAATAGTTAGCGAGAGCTCAACCTCCCAGCTATAACTTTAAGGCTT-GTAGGTTCAATAC
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATAC
* * * * *
92432485 CGTAGCTCCT-GAAATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCACAGGAT
66 CGTAAC-CCTCGAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTT
*
92432549 CAATATCGCAAC
130 CAATACCGCAAC
* * * ** * * * *
92432561 CCCCAAAACAATTAGCGTA-AGCTTAAGCTCTTAACTGTAGTTTTAAGACTT-GCAGGTTCAATA
1 CCCCAAAATAGTTAGCG-AGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATA
* ** * ** * *
92432624 TCGT-AGTCT-GTAAAATAGTTAGCACCAGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAA
65 CCGTAACCCTCG--AAATAGTTAGCACAAGCTCAAGCT-CCCAATTGTAACTTTAAGGCTCGCAG
*
92432687 GTTCAATACCGTAAC
127 GTTCAATACCGCAAC
* *** *
92432702 CCCCAAAATAGTTAGCGTGAGCTCAAGCTCTTGGTTGTAATTTTAAGGCTT-GTAGGTTCAATAC
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATAC
* * * * * * *
92432766 CGT-AGCCTC-CAATCAGTTAGCGCAAGCTCAAGCTCCCAACTGTAA-TCCTAAGGCTCGAAGAT
66 CGTAACCCTCGAAAT-AGTTAGCACAAGCTCAAGCTCCCAATTGTAACT-TTAAGGCTCGCAGGT
* *
92432828 TTAATACCGCATC
129 TCAATACCGCAAC
* *
92432841 CTCCAAAGTAGTTAG
1 CCCCAAAATAGTTAG
92432856 TCTGAGCCCA
Statistics
Matches: 571, Mismatches: 121, Indels: 43
0.78 0.16 0.06
Matches are distributed among these distances:
138 64 0.11
139 147 0.26
140 265 0.46
141 95 0.17
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (141 bp):
CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGTAGGTTCAATAC
CGTAACCCTCGAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTC
AATACCGCAAC
Found at i:92432327 original size:69 final size:69
Alignment explanation
Indices: 92431953--92432877 Score: 527
Period size: 70 Copynumber: 13.3 Consensus size: 69
92431943 AAGTAATGCA
* * * * * * * * * * *
92431953 AGCTCAATCTACCAACTGTAATTTTAAGGCTTGTAGGTTTAATATTTCATCCCCAAAACAGTTAG
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAATAGTTAG
*
92432018 TGCG
66 CGCG
* * * ** * *** * *
92432022 AGCTTAAGCTTCTAGTTGTAATTTTAAGGCTTACG-A-GTTCAATACCATAACCCTCAAAATAGT
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGC-T-CGCAGGTTCAATACTGCAGCCC-CCAAATAGT
92432085 TAGCGCG
63 TAGCGCG
** * **
92432092 AGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATGCCACAGCCCCCAAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCC-AAATAGTTA
*
92432157 -CTGAG
65 GC-GCG
* * * * *
92432162 AGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTGAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCC-CAAATAGTTA
*
92432227 GCACG
65 GCGCG
* * * *
92432232 AGCTCAAGCTCCCAATTGTAACTTTAAGGCTCACAGGTTCAATATTGCAGCCCCCAAATAATTAG
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAATAGTTAG
92432297 CGCG
66 CGCG
* ** * *
92432301 AGCGT-AAGCTCCCAGCTGTAGTTTTAAGGCTCGCAGGTTCAATACTGCAGCCTCGAAATAGTTA
1 AGC-TCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAATAGTTA
*
92432365 GCGCA
65 GCGCG
* * * * * *** * *
92432370 AGCTCCAGATCCTAACTATAACTTTAAGGCTCGCATGTTCAATACCATAACCCCTGAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCC-CAAATAGTTA
*
92432435 GCGAG
65 GCGCG
* * * * * * * **
92432440 AGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCAATACCGTAGCTCCTGAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGC-CCCCAAATAGTTA
* *
92432505 GCACA
65 GCGCG
* * * * * * *
92432510 AGCTCCAGCTCCCAAATGTAACTTTAAGGCTCACAGGATCAATA-TCGCAACCCCCAAAACAATT
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACT-GCAGCCCCC-AAATAGTT
**
92432574 AGCGTA
64 AGCGCG
* ** ** * * * ****
92432580 AGCTTAAGCTCTTAACTGTAGTTTTAAGACTTGCAGGTTCAATA-TCGTAGTCTGTAAAATAGTT
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACT-GCAG-CCCCCAAATAGTT
* *
92432644 AGCACC
64 AGCGCG
* ** * * * * *
92432650 AGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAAGTTCAATACCGTAACCCCCAAAATAGTT
1 AGCTCAAGCT-CCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCC-AAATAGTT
*
92432715 AGCGTG
64 AGCGCG
***** * * * * * *
92432721 AGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGTTCAATACCGTAGCCTCC-AATCAGTTA
1 AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAAT-AGTTA
*
92432785 GCGCA
65 GCGCG
* * * * * * *
92432790 AGCTCAAGCTCCCAACTGTAA-TCCTAAGGCTCGAAGATTTAATACCGCATCCTCCAAAGTAGTT
1 AGCTCAAGCTCCCAACTGTAACT-TTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAA-TAGTT
*
92432854 AGTC-TG
64 AG-CGCG
* *
92432860 AGCCCACGCTCCCAACTG
1 AGCTCAAGCTCCCAACTG
92432878 ATGTTATAAA
Statistics
Matches: 665, Mismatches: 167, Indels: 47
0.76 0.19 0.05
Matches are distributed among these distances:
68 7 0.01
69 198 0.30
70 400 0.60
71 60 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (69 bp):
AGCTCAAGCTCCCAACTGTAACTTTAAGGCTCGCAGGTTCAATACTGCAGCCCCCAAATAGTTAG
CGCG
Found at i:92432445 original size:208 final size:209
Alignment explanation
Indices: 92432078--92432568 Score: 515
Period size: 208 Copynumber: 2.3 Consensus size: 209
92432068 ATAACCCTCA
* * *
92432078 AAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATGCCACAGC
1 AAATAATTAGCGCGAGCTCAAGCTCCCAGCTGTAACTTTAAGGCTCGCAGGTTCAATACCACAGC
* * * * *
92432143 CCCCAAAATAGTTACTGAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACT
66 CCCCAAAATAGTTACTGAGAGCTCAAGATCCCAACTATAACTTTAAAGCTCGCAGGTTCAATACC
* * * * *
92432208 GTAGCCCCTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCACAGGTTCA
131 ATAACCCCTGAAATAGTTAGCACGAGCTCAACCTCCCAACTATAACTTTAAGGCTCACAGGTTCA
92432273 ATATTGCAGCCCCC
196 ATATTGCAGCCCCC
** **
92432287 AAATAATTAGCGCGAGCGT-AAGCTCCCAGCTGTAGTTTTAAGGCTCGCAGGTTCAATACTGCAG
1 AAATAATTAGCGCGAGC-TCAAGCTCCCAGCTGTAACTTTAAGGCTCGCAGGTTCAATACCACAG
* * * * * *
92432351 -CCTCGAAATAGTTAGC-GCA-AGCTCCAGATCCTAACTATAACTTTAAGGCTCGCATGTTCAAT
65 CCCCCAAAATAGTTA-CTG-AGAGCTCAAGATCCCAACTATAACTTTAAAGCTCGCAGGTTCAAT
* ***
92432413 ACCATAACCCCTGAAATAGTTAGCGA-GAGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGG
128 ACCATAACCCCTGAAATAGTTAGC-ACGAGCTCAACCTCCCAACTATAACTTTAAGGCTCACAGG
** * **
92432477 TTCAATACCGTAGCTCCTG
192 TTCAATATTGCAGC-CCCC
* * * * ** * * * * *
92432496 AAATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCACAGGATCAATATCGCAAC
1 AAATAATTAGCGCGAGCTCAAGCTCCCAGCTGTAACTTTAAGGCTCGCAGGTTCAATACCACAGC
92432561 CCCCAAAA
66 CCCCAAAA
92432569 CAATTAGCGT
Statistics
Matches: 228, Mismatches: 47, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
208 112 0.49
209 109 0.48
210 7 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (209 bp):
AAATAATTAGCGCGAGCTCAAGCTCCCAGCTGTAACTTTAAGGCTCGCAGGTTCAATACCACAGC
CCCCAAAATAGTTACTGAGAGCTCAAGATCCCAACTATAACTTTAAAGCTCGCAGGTTCAATACC
ATAACCCCTGAAATAGTTAGCACGAGCTCAACCTCCCAACTATAACTTTAAGGCTCACAGGTTCA
ATATTGCAGCCCCC
Found at i:92432480 original size:278 final size:279
Alignment explanation
Indices: 92432073--92432810 Score: 887
Period size: 278 Copynumber: 2.6 Consensus size: 279
92432063 ATACCATAAC
* * * * *
92432073 CCTCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATGCC
1 CCTCGAAATAGTTAGCGCAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAAGTTCAATACC
* * * * *
92432138 ACAGCCCCCAAAATAGTTA-CTGAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTC
66 ATAACCCCCAAAATAGTTAGC-GAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGTAGGTTC
* * *
92432202 AATACTGTAGCCCCTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCACA
130 AATACCGTAGCCCCTGAAATAGTTAGCACAAGCTCAAGCTCCCAAATGTAACTTTAAGGCTCACA
* * * * * * *
92432267 GGTTCAATATTGCAGCCCCC-AAATAATTAGCGCGAGCGTAAGCTCCCAGCTGTAGTTTTAAGGC
195 GGATCAATATCGCAACCCCCAAAACAATTAGCGCAAGCGTAAGCTCCCAACTGTAGTTTTAAGAC
92432331 TCGCAGGTTCAATA-CTGCAG
260 TCGCAGGTTCAATATC-GCAG
* * * * * *
92432351 CCTCGAAATAGTTAGCGCAAGCTCCAGATCCTAACTATAACTTTAAGGCTCGCATGTTCAATACC
1 CCTCGAAATAGTTAGCGCAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAAGTTCAATACC
** * * *
92432416 ATAACCCCTGAAATAGTTAGCGAGAGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCA
66 ATAACCCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGTAGGTTCA
* *
92432481 ATACCGTAGCTCCTGAAATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCACAG
131 ATACCGTAGCCCCTGAAATAGTTAGCACAAGCTCAAGCTCCCAAATGTAACTTTAAGGCTCACAG
* * **
92432546 GATCAATATCGCAACCCCCAAAACAATTAGCGTAAGCTTAAGCTCTTAACTGTAGTTTTAAGACT
196 GATCAATATCGCAACCCCCAAAACAATTAGCGCAAGCGTAAGCTCCCAACTGTAGTTTTAAGACT
* *
92432611 TGCAGGTTCAATATCGTAG
261 CGCAGGTTCAATATCGCAG
* * * ** *
92432630 TCT-GTAAAATAGTTAGCACCAGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAAGTTCAAT
1 CCTCG--AAATAGTTAGCGCAAGCTCAAGCT-CCCAATTGTAACTTTAAGGCTCGCAAGTTCAAT
* * *** *
92432694 ACCGTAACCCCCAAAATAGTTAGCGTGAGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGT
63 ACCATAACCCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGTAGGT
* *
92432759 TCAATACCGTAGCCTCC---AATCAGTTAGCGCAAGCTCAAGCTCCCAACTGTAA
128 TCAATACCGTAGCC-CCTGAAAT-AGTTAGCACAAGCTCAAGCTCCCAAATGTAA
92432811 TCCTAAGGCT
Statistics
Matches: 387, Mismatches: 65, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
278 185 0.48
279 58 0.15
280 49 0.13
281 93 0.24
282 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (279 bp):
CCTCGAAATAGTTAGCGCAAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAAGTTCAATACC
ATAACCCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGTAGGTTCA
ATACCGTAGCCCCTGAAATAGTTAGCACAAGCTCAAGCTCCCAAATGTAACTTTAAGGCTCACAG
GATCAATATCGCAACCCCCAAAACAATTAGCGCAAGCGTAAGCTCCCAACTGTAGTTTTAAGACT
CGCAGGTTCAATATCGCAG
Found at i:92432973 original size:18 final size:18
Alignment explanation
Indices: 92432950--92432997 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
92432940 AAATTAGGTA
*
92432950 AAGTTTGAAATTTTGCTT
1 AAGTTTGAAATTTTACTT
* *
92432968 AAGTTTGAGAGTTTACTT
1 AAGTTTGAAATTTTACTT
*
92432986 GAGTTTGAAATT
1 AAGTTTGAAATT
92432998 CACTTAAGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (18 bp):
AAGTTTGAAATTTTACTT
Found at i:92433616 original size:29 final size:31
Alignment explanation
Indices: 92433568--92433631 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
92433558 TTTATAGTTA
*
92433568 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
92433599 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
92433628 TTTA
1 TTTA
92433632 TTATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:92433620 original size:8 final size:8
Alignment explanation
Indices: 92433609--92433641 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
92433599 TTTAATAAGA
92433609 TATTTTAT
1 TATTTTAT
92433617 TATTTTAT
1 TATTTTAT
92433625 TATTTTAT
1 TATTTTAT
92433633 TATTTTAT
1 TATTTTAT
92433641 T
1 T
92433642 TAGTCTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:92438349 original size:15 final size:15
Alignment explanation
Indices: 92438329--92438357 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92438319 AACGATGATA
92438329 ATGATGATAATAATG
1 ATGATGATAATAATG
92438344 ATGATGATAATAAT
1 ATGATGATAATAAT
92438358 AATAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (15 bp):
ATGATGATAATAATG
Found at i:92438349 original size:24 final size:25
Alignment explanation
Indices: 92438287--92438354 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
92438277 AACTTCTGGA
92438287 ATAATAATAATGATGATAATGATTC
1 ATAATAATAATGATGATAATGATTC
* * * *
92438312 A-AACAACAACGATGATAATGA-TG
1 ATAATAATAATGATGATAATGATTC
*
92438335 ATAATAATGATGATGATAAT
1 ATAATAATAATGATGATAAT
92438355 AATAATAGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 2 0.06
24 31 0.91
25 1 0.03
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (25 bp):
ATAATAATAATGATGATAATGATTC
Found at i:92439353 original size:16 final size:17
Alignment explanation
Indices: 92439328--92439360 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
92439318 CTAAATAATT
*
92439328 TTTTTTTATT-TTTAAA
1 TTTTTATATTATTTAAA
92439344 TTTTTATATTATTTAAA
1 TTTTTATATTATTTAAA
92439361 ATTTAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTATATTATTTAAA
Found at i:92441137 original size:4 final size:4
Alignment explanation
Indices: 92441128--92441153 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
92441118 CAAAAAATTA
92441128 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
92441154 TTAAGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:92441181 original size:10 final size:10
Alignment explanation
Indices: 92441166--92441209 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
92441156 AAGATATTGT
92441166 TTAAAAATTA
1 TTAAAAATTA
92441176 TTAAAAATTA
1 TTAAAAATTA
92441186 -TAAGAAATTA
1 TTAA-AAATTA
92441196 -TAAAAA-TA
1 TTAAAAATTA
92441204 TTAAAA
1 TTAAAA
92441210 TTAATATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.06
9 11 0.34
10 19 0.59
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:92441436 original size:23 final size:21
Alignment explanation
Indices: 92441384--92441441 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
92441374 AAATTATTGA
*
92441384 AATATTTTAATAATTTCTTAT
1 AATATTTGAATAATTTCTTAT
* *
92441405 AAT-TCTGAATAATTTTTTAAT
1 AATATTTGAATAATTTCTT-AT
*
92441426 AATTATTTGAAAAATT
1 AA-TATTTGAATAATT
92441442 CATTCAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 12 0.41
21 7 0.24
22 1 0.03
23 9 0.31
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (21 bp):
AATATTTGAATAATTTCTTAT
Found at i:92443880 original size:14 final size:14
Alignment explanation
Indices: 92443861--92443893 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92443851 TATTATTATT
92443861 TTAATTTT-TTTACA
1 TTAATTTTATTTA-A
92443875 TTAATTTTATTTAA
1 TTAATTTTATTTAA
92443889 TTAAT
1 TTAAT
92443894 AAAAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TTAATTTTATTTAA
Found at i:92444977 original size:20 final size:20
Alignment explanation
Indices: 92444948--92444989 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
92444938 CAACCAAAAT
*
92444948 AAAACCAAAT-ATTAAACCA
1 AAAACCAAATAATAAAACCA
92444967 AAAATCCAAATAATAAAACCA
1 AAAA-CCAAATAATAAAACCA
92444988 AA
1 AA
92444990 TTAATAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAACCAAATAATAAAACCA
Found at i:92445408 original size:14 final size:14
Alignment explanation
Indices: 92445389--92445415 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92445379 GGAGAGGTGA
92445389 TTTCTTTTATTTTT
1 TTTCTTTTATTTTT
92445403 TTTCTTTTATTTT
1 TTTCTTTTATTTT
92445416 ATAATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTCTTTTATTTTT
Found at i:92445857 original size:15 final size:15
Alignment explanation
Indices: 92445829--92445868 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
92445819 TTCAATCTAT
92445829 TATTTCTA-TTATTA
1 TATTTCTATTTATTA
92445843 TATTTCTATTTATTA
1 TATTTCTATTTATTA
*
92445858 TCTTTCTATTT
1 TATTTCTATTT
92445869 GTATTTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTCTATTTATTA
Found at i:92445952 original size:24 final size:26
Alignment explanation
Indices: 92445899--92445955 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 26
92445889 TTATTTTCAT
*
92445899 TATTTTTTTAACTATTATTAATTTAA
1 TATTATTTTAACTATTATTAATTTAA
* *
92445925 TATTATTTT-ACTATTA-TCATTTAC
1 TATTATTTTAACTATTATTAATTTAA
92445949 TATTATT
1 TATTATT
92445956 CCTATTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 13 0.46
25 7 0.25
26 8 0.29
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTATTTTAACTATTATTAATTTAA
Found at i:92445964 original size:25 final size:23
Alignment explanation
Indices: 92445910--92445966 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
92445900 ATTTTTTTAA
92445910 CTATTATTA-ATTTAATATTATT
1 CTATTATTATATTTAATATTATT
* * *
92445932 TTACTATTATCATTTACTATTATT
1 CTATTATTAT-ATTTAATATTATT
92445956 CCTATTATTAT
1 -CTATTATTAT
92445967 TAACATATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 7 0.26
24 12 0.44
25 8 0.30
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (23 bp):
CTATTATTATATTTAATATTATT
Found at i:92445992 original size:15 final size:15
Alignment explanation
Indices: 92445972--92446014 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
92445962 ATTATTAACA
*
92445972 TATCATTATTCTTAT
1 TATCATTCTTCTTAT
92445987 TATCATTCTT-TATAT
1 TATCATTCTTCT-TAT
92446002 TAT-ATTCTTCTTA
1 TATCATTCTTCTTA
92446015 ATGTATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (15 bp):
TATCATTCTTCTTAT
Found at i:92446139 original size:3 final size:3
Alignment explanation
Indices: 92446131--92446156 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92446121 CTTTTCGTAT
92446131 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
92446157 TTCGTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:92452597 original size:10 final size:10
Alignment explanation
Indices: 92452570--92452619 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
92452560 TTAAATTCTA
*
92452570 AAAGATAATT
1 AAAGATAAAT
92452580 ACAA-ATAAAT
1 A-AAGATAAAT
*
92452590 AAAGATAATT
1 AAAGATAAAT
92452600 AAAGATAAAT
1 AAAGATAAAT
92452610 GAAA-ATAAAT
1 -AAAGATAAAT
92452620 CCTAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:92452617 original size:20 final size:20
Alignment explanation
Indices: 92452570--92452609 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
92452560 TTAAATTCTA
92452570 AAAGATAATTACAAATAAAT
1 AAAGATAATTACAAATAAAT
92452590 AAAGATAATTA-AAGATAAAT
1 AAAGATAATTACAA-ATAAAT
92452610 GAAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (20 bp):
AAAGATAATTACAAATAAAT
Found at i:92454488 original size:13 final size:13
Alignment explanation
Indices: 92454470--92454494 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92454460 TCCTTGGTGG
92454470 GCTGGGTTATATA
1 GCTGGGTTATATA
92454483 GCTGGGTTATAT
1 GCTGGGTTATAT
92454495 TTTATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.32, T:0.40
Consensus pattern (13 bp):
GCTGGGTTATATA
Found at i:92458812 original size:43 final size:40
Alignment explanation
Indices: 92458673--92458893 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
92458663 TATTCGGATG
*
92458673 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
92458713 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
92458753 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
92458796 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
92458836 ATATCCGGGCTAAGACCC----GCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
92458872 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
92458894 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 10, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
35 9 0.06
36 19 0.12
37 2 0.01
39 3 0.02
40 91 0.57
43 35 0.22
44 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:92458830 original size:83 final size:80
Alignment explanation
Indices: 92458673--92458854 Score: 285
Period size: 83 Copynumber: 2.2 Consensus size: 80
92458663 TATTCGGATG
*
92458673 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATACCCGGGCTAAGTCCCGAAGGCA
92458738 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
92458753 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTCCCGAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACCATACCCGGGCTAAGTCCCGAA
92458817 GGCATTTGTGCTAGTGACT
62 GGCATTTGTGCTAGTGACT
*
92458836 ATATCCGGGCTAAGACCCG
1 ATATCCGGGCTAAGTCCCG
92458855 CATGTGTGCG
Statistics
Matches: 93, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
80 31 0.33
83 60 0.65
84 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATACCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:92467855 original size:20 final size:19
Alignment explanation
Indices: 92467816--92467855 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
92467806 ATTAACATAG
* *
92467816 TAAAAAAATACTAAATAAA
1 TAAAAAAATACAAAACAAA
92467835 TAAAAAAATACGAAAACAAA
1 TAAAAAAATAC-AAAACAAA
92467855 T
1 T
92467856 TATGAACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (19 bp):
TAAAAAAATACAAAACAAA
Found at i:92468172 original size:17 final size:16
Alignment explanation
Indices: 92468152--92468337 Score: 69
Period size: 17 Copynumber: 11.7 Consensus size: 16
92468142 CAAATTTTTA
92468152 AAATTATACATAATAAT
1 AAATTATA-ATAATAAT
*
92468169 AAATAATAAATAATAAT
1 AAATTAT-AATAATAAT
92468186 ATAA-TATAATATATAAT
1 A-AATTATAATA-ATAAT
92468203 AAA--ATAA-AATAAT
1 AAATTATAATAATAAT
*
92468216 --ATAATAATGAATAAT
1 AAATTATAAT-AATAAT
*
92468231 ATA-TATAATAA-AAT
1 AAATTATAATAATAAT
*
92468245 -GA-TATAATATATAAT
1 AAATTATAATA-ATAAT
92468260 AAAATCTATAAATAA-AAT
1 -AAAT-TAT-AATAATAAT
* *
92468278 ATATAATAA-AAT-AT
1 AAATTATAATAATAAT
92468292 AAATAATATAATAAATAAT
1 AAAT--TATAAT-AATAAT
* *
92468311 ACATAAATAA-AATAAT
1 AAAT-TATAATAATAAT
92468327 -AATATATAATA
1 AAAT-TATAATA
92468338 TTTTTACATA
Statistics
Matches: 133, Mismatches: 13, Indels: 47
0.69 0.07 0.24
Matches are distributed among these distances:
11 1 0.01
13 17 0.13
14 12 0.09
15 24 0.18
16 24 0.18
17 28 0.21
18 14 0.11
19 9 0.07
20 4 0.03
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.33
Consensus pattern (16 bp):
AAATTATAATAATAAT
Found at i:92468186 original size:20 final size:20
Alignment explanation
Indices: 92468161--92468337 Score: 114
Period size: 20 Copynumber: 9.2 Consensus size: 20
92468151 AAAATTATAC
92468161 ATAATAATAAATAATAAATA
1 ATAATAATAAATAATAAATA
*
92468181 ATAAT-ATAATATAATATATA
1 ATAATAATAA-ATAATAAATA
92468201 ATAA-AATAAAATAATATAATA
1 ATAATAAT-AAATAATA-AATA
*
92468222 ATGAATAATATAT-AT-AATA
1 AT-AATAATAAATAATAAATA
*
92468241 A-AATGATATAAT-ATATAATA
1 ATAATAATA-AATAATA-AATA
*
92468261 A-AATCTATAAAT-A-AAAT-
1 ATAAT-AATAAATAATAAATA
92468278 AT-ATAATAAA-ATATAAATA
1 ATAATAATAAATA-ATAAATA
*
92468297 AT-ATAATAAATAATACATAA
1 ATAATAATAAATAATAAAT-A
*
92468317 ATAA-AAT-AATAATATATA
1 ATAATAATAAATAATAAATA
92468335 ATA
1 ATA
92468338 TTTTTACATA
Statistics
Matches: 130, Mismatches: 9, Indels: 38
0.73 0.05 0.21
Matches are distributed among these distances:
16 5 0.04
17 10 0.08
18 15 0.12
19 34 0.26
20 45 0.35
21 13 0.10
22 5 0.04
23 3 0.02
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (20 bp):
ATAATAATAAATAATAAATA
Found at i:92468206 original size:52 final size:52
Alignment explanation
Indices: 92468150--92468337 Score: 188
Period size: 57 Copynumber: 3.5 Consensus size: 52
92468140 TACAAATTTT
*
92468150 TAAAAT-TATACATAATAATAAATAATAAATAATAATATAATATAATATATAA
1 TAAAATATATAAATAATAATAAATAATAAATAATAA-ATAATATAATATATAA
* * *
92468202 TAAAATAAAATAATATAATAATGAATAATATATATAATAAAATGATATAATATATAA
1 TAAAAT-ATATAA-ATAATAATAAATAATA-A-ATAAT-AAATAATATAATATATAA
* * *
92468259 TAAAATCTATAAATAA-AATATATAATAAA-ATATAAATAATATAATAAATAA
1 TAAAATATATAAATAATAATAAATAATAAATA-ATAAATAATATAATATATAA
*
92468310 TACATAA-ATA-AAATAATAATATATAATA
1 TA-A-AATATATAAATAATAATAAATAATA
92468338 TTTTTACATA
Statistics
Matches: 115, Mismatches: 11, Indels: 20
0.79 0.08 0.14
Matches are distributed among these distances:
51 25 0.22
52 23 0.20
53 3 0.03
54 12 0.10
55 19 0.17
56 5 0.04
57 26 0.23
58 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (52 bp):
TAAAATATATAAATAATAATAAATAATAAATAATAAATAATATAATATATAA
Found at i:92468241 original size:32 final size:31
Alignment explanation
Indices: 92468156--92468337 Score: 148
Period size: 32 Copynumber: 5.8 Consensus size: 31
92468146 TTTTTAAAAT
*
92468156 TATACATAATAATAA-ATA-ATAA-ATAATAA
1 TATA-ATAATAATAATATATATAATAAAATAA
*
92468185 TATAAT-ATAAT-ATATAATAAAATAAAATAA
1 TATAATAATAATAATAT-ATATAATAAAATAA
*
92468215 TATAATAATGAATAATATATATAATAAAATGA
1 TATAATAAT-AATAATATATATAATAAAATAA
* *
92468247 TATAATATATAATAAAATCTATAAATAAAAT-A
1 TATAATA-ATAATAATATATAT-AATAAAATAA
*
92468279 TATAATAA-AATATAAATAATATAAT-AAATAA
1 TATAATAATAATA-ATAT-ATATAATAAAATAA
92468310 TACATAAATAA-AATAATAATATATAATA
1 T--AT-AATAATAATAAT-ATATATAATA
92468338 TTTTTACATA
Statistics
Matches: 128, Mismatches: 8, Indels: 29
0.78 0.05 0.18
Matches are distributed among these distances:
26 1 0.01
27 7 0.05
28 3 0.02
29 7 0.05
30 20 0.16
31 12 0.09
32 43 0.34
33 24 0.19
34 11 0.09
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (31 bp):
TATAATAATAATAATATATATAATAAAATAA
Found at i:92468242 original size:64 final size:62
Alignment explanation
Indices: 92468161--92468415 Score: 177
Period size: 64 Copynumber: 4.0 Consensus size: 62
92468151 AAAATTATAC
*
92468161 ATAATAATAAATAATAAATAATAATATAATATAATATATAATA-AAATAAAATAATATAATAATG
1 ATAAT-ATATATAATAAATAATAATATAATATAATATATAATATAAATAAAAT-ATATAATAA--
92468225 A
62 A
* *
92468226 ATAATATATATAAT-AA-AATGATATAATAT-ATAATAAAATCTATAAATAAAATATATAATAAA
1 ATAATATATATAATAAATAATAATATAATATAAT-ATATAA--TATAAATAAAATATATAATAAA
* * ** * *
92468288 ATATAAATAATATAATAAATAATACATA-AATAAAATA-ATAATATATAAT-ATTTTTACATATA
1 ATA-ATAT-ATATAATAAATAATA-ATATAATATAATATATAATATA-AATAAAATATATA-ATA
92468350 TAA
61 -AA
* * * * * *
92468353 ATAATATTTATAGTAAAATAAATAATAT-ATAAAATATTTAAAATAAATAAATTATAT-ATAAA
1 ATAATATATATAAT-AAAT-AATAATATAATATAATATATAATATAAATAAAATATATAATAAA
92468415 A
1 A
92468416 AAATTTAAAA
Statistics
Matches: 153, Mismatches: 19, Indels: 39
0.73 0.09 0.18
Matches are distributed among these distances:
61 2 0.01
62 24 0.16
63 22 0.14
64 53 0.35
65 39 0.25
66 8 0.05
67 5 0.03
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (62 bp):
ATAATATATATAATAAATAATAATATAATATAATATATAATATAAATAAAATATATAATAAA
Found at i:92468317 original size:42 final size:42
Alignment explanation
Indices: 92468150--92468335 Score: 153
Period size: 42 Copynumber: 4.5 Consensus size: 42
92468140 TACAAATTTT
*
92468150 TAAAAT-TATACATAATA-ATAAATAATA-AATAAT-AATATAA
1 TAAAATATATA-ATAAAATATAAATAATATAATAATCAATA-AA
* *
92468190 TATAATATATAATAAAATA-AAATAATATAATAATGAAT-AA
1 TAAAATATATAATAAAATATAAATAATATAATAATCAATAAA
*
92468230 T---ATATATAATAAAATGATATAAT-ATATAATAAAATCTATAAA
1 TAAAATATATAATAAAAT-ATA-AATAATATAAT--AATCAATAAA
*
92468272 TAAAATATATAATAAAATATAAATAATATAATAAAT-AATACA
1 TAAAATATATAATAAAATATAAATAATATAAT-AATCAATAAA
* *
92468314 T-AAATAAAATAATAATATATAA
1 TAAAAT-ATATAATAAAATATAA
92468336 TATTTTTACA
Statistics
Matches: 123, Mismatches: 8, Indels: 28
0.77 0.05 0.18
Matches are distributed among these distances:
37 14 0.11
38 1 0.01
39 8 0.07
40 24 0.20
41 20 0.16
42 25 0.20
43 7 0.06
44 10 0.08
45 14 0.11
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.33
Consensus pattern (42 bp):
TAAAATATATAATAAAATATAAATAATATAATAATCAATAAA
Found at i:92468335 original size:7 final size:7
Alignment explanation
Indices: 92468164--92468338 Score: 109
Period size: 7 Copynumber: 27.0 Consensus size: 7
92468154 ATTATACATA
*
92468164 ATAATAA
1 ATAATAT
*
92468171 ATAATAA
1 ATAATAT
92468178 ATAATA-
1 ATAATAT
92468184 AT-ATAAT
1 ATAAT-AT
92468191 ATAATAT
1 ATAATAT
92468198 ATAATA-
1 ATAATAT
92468204 A-AATA-
1 ATAATAT
92468209 A-AATAAT
1 ATAAT-AT
92468216 ATAATA-
1 ATAATAT
92468222 ATGAATA-
1 AT-AATAT
92468229 AT-ATAT
1 ATAATAT
92468235 ATAATA-
1 ATAATAT
92468241 A-AATGAT
1 ATAAT-AT
92468248 ATAATAT
1 ATAATAT
92468255 ATAATA-
1 ATAATAT
*
92468261 A-AATCT
1 ATAATAT
92468267 ATAA-AT
1 ATAATAT
*
92468273 AAAATAT
1 ATAATAT
92468280 ATAATA-
1 ATAATAT
92468286 A-AATAT
1 ATAATAT
92468292 A-AATAAT
1 ATAAT-AT
*
92468299 ATAATAA
1 ATAATAT
*
92468306 ATAATAC
1 ATAATAT
92468313 ATAA-AT
1 ATAATAT
*
92468319 AAAATA-
1 ATAATAT
92468325 ATAATAT
1 ATAATAT
92468332 ATAATAT
1 ATAATAT
92468339 TTTTACATAT
Statistics
Matches: 139, Mismatches: 9, Indels: 40
0.74 0.05 0.21
Matches are distributed among these distances:
5 23 0.17
6 31 0.22
7 74 0.53
8 11 0.08
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (7 bp):
ATAATAT
Found at i:92468338 original size:5 final size:5
Alignment explanation
Indices: 92468161--92468332 Score: 93
Period size: 5 Copynumber: 35.6 Consensus size: 5
92468151 AAAATTATAC
*
92468161 ATAAT AATAA- ATAAT A-AAT AATAAT ATAAT ATAAT AT-AT AATAAA
1 ATAAT -ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT
* * *
92468206 ATAAA ATAAT ATAAT AATGA- ATAAT AT-AT ATAAT A-AA- ATGAT ATAAT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
92468253 AT-AT AATAAA AT-CT ATAA- ATAAA AT-AT ATAAT AAAAT ATAA- ATAAT
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
92468299 ATAAT A-AAT AATACAT A-AAT AAAAT AATAAT ATA
1 ATAAT ATAAT -ATA-AT ATAAT ATAAT -ATAAT ATA
92468333 TAATATTTTT
Statistics
Matches: 131, Mismatches: 14, Indels: 43
0.70 0.07 0.23
Matches are distributed among these distances:
3 1 0.01
4 40 0.31
5 70 0.53
6 18 0.14
7 2 0.02
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:92468352 original size:82 final size:84
Alignment explanation
Indices: 92468164--92468385 Score: 230
Period size: 82 Copynumber: 2.7 Consensus size: 84
92468154 ATTATACATA
* *
92468164 ATAATAAATAAT-AAATAATAATATAATATAATATATAATAAAATA-AAATAATATAAT-AATGA
1 ATAATATATAATAAAAT-AT-ATA-AATAAAATATATAATAAAATATAAATAATATAATAAATGA
* *
92468226 ATAATATATATAATAAAATGAT
63 ATAATAAATAAAATAAAATGAT
*
92468248 ATAATATATAATAAAATCTATAAATAAAATATATAATAAAATATAAATAATATAATAAAT-AATA
1 ATAATATATAATAAAATATATAAATAAAATATATAATAAAATATAAATAATATAATAAATGAATA
92468312 CATAAATAAAATAATAAT-AT
66 -ATAAATAAAATAA-AATGAT
* * * * * *
92468332 ATAATAT-T-TTTACATATATAAATAATATTTATAGT-AAA-ATAAATAATAT-ATAAA
1 ATAATATATAATAAAATATATAAATAAAATATATAATAAAATATAAATAATATAATAAA
92468386 ATATTTAAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
79 5 0.04
80 11 0.09
81 3 0.02
82 40 0.33
83 20 0.17
84 35 0.29
85 7 0.06
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (84 bp):
ATAATATATAATAAAATATATAAATAAAATATATAATAAAATATAAATAATATAATAAATGAATA
ATAAATAAAATAAAATGAT
Found at i:92468381 original size:32 final size:32
Alignment explanation
Indices: 92468164--92468422 Score: 139
Period size: 30 Copynumber: 8.0 Consensus size: 32
92468154 ATTATACATA
92468164 ATAATAAATAATAAATAATAATATAATATAATA--T
1 ATAAT-AA-AATAAATAAT-ATATAA-ATAATATTT
*
92468198 ATAATAAAATAAAATAATATAATAATGAATAATATAT
1 ATAATAAAAT-AAATAATAT-AT-A--AATAATATTT
* * *
92468235 ATAATAAAATGATATAATATAT-AATAAAATCT
1 ATAATAAAAT-AAATAATATATAAATAATATTT
* *
92468267 ATAAATAAAATATATAATAAAATATAAATAATA-TA
1 AT-AAT-AAA-ATA-AATAATATATAAATAATATTT
* * *
92468302 ATAA-ATAATACATAA-ATA-AAATAATA-AT
1 ATAATAAAATAAATAATATATAAATAATATTT
* ***
92468330 AT-ATAATATTTTTACATATATAAATAATATTT
1 ATAATAAAATAAATA-ATATATAAATAATATTT
*
92468362 ATAGTAAAATAAATAATATAT-AA-AATATTT
1 ATAATAAAATAAATAATATATAAATAATATTT
* * *
92468392 AAAAT-AAATAAATTATATATAAA-AAAATTT
1 ATAATAAAATAAATAATATATAAATAATATTT
92468422 A
1 A
92468423 AAAAGGATTA
Statistics
Matches: 178, Mismatches: 28, Indels: 42
0.72 0.11 0.17
Matches are distributed among these distances:
27 1 0.01
28 15 0.08
29 18 0.10
30 26 0.15
31 13 0.07
32 26 0.15
33 21 0.12
34 12 0.07
35 18 0.10
36 9 0.05
37 19 0.11
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (32 bp):
ATAATAAAATAAATAATATATAAATAATATTT
Found at i:92470014 original size:90 final size:90
Alignment explanation
Indices: 92469845--92470601 Score: 1041
Period size: 90 Copynumber: 8.4 Consensus size: 90
92469835 TAATATACTT
* * * * *
92469845 GATCTGCTCCCCGTCAAATACAGAGATGCCAAATCTG-CTATCTTTGATTTGCTTCGATATAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAAC
*
92469909 ACATGAATGTCAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * * *
92469935 GACCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTCATTTTCGATTTGCTTTGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* * * * *
92470000 AACAAATATAAGATCTGCTATCTTT
66 CACGAATGTCAGATCTGCTATCTTC
* * * *
92470025 GATCTGCTCCCCGTTTAATACAGAGACGCCAAATCTATCATTTTCGATCTACTT-GATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* *
92470089 CACAAATGTCACATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * * *
92470114 GATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTACTTCGATATAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
92470179 CACGAATGTCAGATCTGCTATCTTT
66 CACGAATGTCAGATCTGCTATCTTC
* *
92470204 GATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCCGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
92470269 CACGAATATCAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * * *
92470294 GATCTACTACTCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCAATCTACTTCGATGTAAAC
1 GATCTGCT-CCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAAC
*
92470359 ACACGAATGTCAGATCTTCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* *
92470385 GATCTGCTCCCCGTCTAATATAGGGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* *
92470450 CACGAGTGTCAGATCTGCTCTCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* *
92470475 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATATGTTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* * *
92470540 CACAAATGTTAGATCTGCTATCTAC
66 CACGAATGTCAGATCTGCTATCTTC
** * * *
92470565 GATCTATTCCTCGTCTAATACAGAAACGCAAAATCTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
92470602 CTTCTTCAAT
Statistics
Matches: 591, Mismatches: 73, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
89 79 0.13
90 429 0.73
91 83 0.14
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (90 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
CACGAATGTCAGATCTGCTATCTTC
Found at i:92470450 original size:271 final size:269
Alignment explanation
Indices: 92469845--92470611 Score: 1090
Period size: 271 Copynumber: 2.8 Consensus size: 269
92469835 TAATATACTT
* * * *
92469845 GATCTGCTCCCCGTCAAATACAGAGATGCCAAATCTG-CTATCTTTGATTTGCTTCGATATAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATATAAAC
* * *
92469909 ACATGAATGTCAGATCTGCTATCTTCGACCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTC
65 ACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * *
92469974 ATTTTCGATTTGCTTTGATGTAAACAAACAAATATAAGATCTGCTATCTTTGATCTGCTCCCCGT
130 ATCTTCGATATGCTTCGATGTAAACACACAAATATAAGATCTGCTATCTTCGATCTACTCTCCGT
* * * *
92470039 TTAATACAGAGACGCCAAATCTATCATTTTCGATCTACTTGATGTAAACACACAAATGTCACATC
195 CTAATACAGAGACGCCAAATCTGTCATCTTCAATCTACTTGATGTAAACACACAAATGTCACATC
92470104 TGCTATCTTC
260 TGCTATCTTC
* * *
92470114 GATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTACTTCGATATAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAACA
* *
92470179 CACGAATGTCAGATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCA
66 CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCA
** * *
92470244 TCTTCGATCCGCTTCGATGTAAACACACGAATATCAGATCTGCTATCTTCGATCTACTACTCCGT
131 TCTTCGATATGCTTCGATGTAAACACACAAATATAAGATCTGCTATCTTCGATCTACT-CTCCGT
* *
92470309 CTAATACAGAGACGCCAAATCTGTCATCTTCAATCTACTTCGATGTAAACACACGAATGTCAGAT
195 CTAATACAGAGACGCCAAATCTGTCATCTTCAATCTACTT-GATGTAAACACACAAATGTCACAT
*
92470374 CTTCTATCTTC
259 CTGCTATCTTC
* * *
92470385 GATCTGCTCCCCGTCTAATATAGGGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAACA
* *
92470450 CACGAGTGTCAGATCTGCTCTCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCA
66 CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCA
* * * * *
92470515 TCTTCGATATGTTTCGATGTAAACACACAAATGTTAGATCTGCTATCTACGATCTATTC-CTCGT
131 TCTTCGATATGCTTCGATGTAAACACACAAATATAAGATCTGCTATCTTCGATCTACTCTC-CGT
* * *
92470579 CTAATACAGAAACGCAAAATCTG-CTTCTTCAAT
195 CTAATACAGAGACGCCAAATCTGTCATCTTCAAT
92470612 TTGTTCCCCG
Statistics
Matches: 444, Mismatches: 50, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
269 175 0.39
270 67 0.15
271 202 0.45
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (269 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAACA
CACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCA
TCTTCGATATGCTTCGATGTAAACACACAAATATAAGATCTGCTATCTTCGATCTACTCTCCGTC
TAATACAGAGACGCCAAATCTGTCATCTTCAATCTACTTGATGTAAACACACAAATGTCACATCT
GCTATCTTC
Found at i:92481050 original size:25 final size:25
Alignment explanation
Indices: 92481021--92481068 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92481011 TTATAATATG
* * *
92481021 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
92481046 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
92481069 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:92481119 original size:9 final size:9
Alignment explanation
Indices: 92481107--92481163 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
92481097 TTTGATAAAC
92481107 ATGATATGT
1 ATGATATGT
*
92481116 ATGATATGCAC
1 ATGATATG--T
*
92481127 ATGACATGT
1 ATGATATGT
*
92481136 ATGATATGCAC
1 ATGATATG--T
92481147 ATGATATGT
1 ATGATATGT
92481156 ATGATATG
1 ATGATATG
92481164 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:92481130 original size:20 final size:20
Alignment explanation
Indices: 92481105--92481167 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
92481095 ATTTTGATAA
92481105 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92481125 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
92481145 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92481165 ACA
1 ACA
92481168 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92481300 original size:23 final size:24
Alignment explanation
Indices: 92481221--92481325 Score: 176
Period size: 24 Copynumber: 4.4 Consensus size: 24
92481211 GAGGAAGTGT
92481221 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
92481245 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
92481269 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATA
* *
92481292 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATA
92481316 AAAAGAGGCT
1 AAAAG-GGCT
92481326 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.29
24 51 0.66
25 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:92481337 original size:48 final size:48
Alignment explanation
Indices: 92481220--92481325 Score: 178
Period size: 47 Copynumber: 2.2 Consensus size: 48
92481210 GGAGGAAGTG
92481220 TAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
92481268 AAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
92481315 TAAAAGAGGCT
1 TAAAAG-GGCT
92481326 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 27 0.50
48 27 0.50
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (48 bp):
TAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:92492229 original size:7 final size:7
Alignment explanation
Indices: 92492217--92492377 Score: 86
Period size: 7 Copynumber: 22.1 Consensus size: 7
92492207 AATTATACAT
92492217 AATAATA
1 AATAATA
92492224 AATAATA
1 AATAATA
92492231 AATAAT-
1 AATAATA
92492237 AA-AATA
1 AATAATA
92492243 ATATAATA
1 A-ATAATA
*
92492251 TATAATAA
1 AATAAT-A
*
92492259 AATGA-A
1 AATAATA
92492265 AATAATA
1 AATAATA
92492272 TAATGAATA
1 -AAT-AATA
92492281 ATATATATA
1 A-ATA-ATA
*
92492290 ATAAAATGA
1 A-ATAAT-A
*
92492299 TATAATA
1 AATAATA
*
92492306 TATAATAA
1 AATAAT-A
92492314 AATATATA
1 AATA-ATA
92492322 AAT-A-A
1 AATAATA
92492327 AAT-ATA
1 AATAATA
92492333 AATAA-A
1 AATAATA
92492339 ATATAGATA
1 A-ATA-ATA
92492348 ATATAATA
1 A-ATAATA
92492356 AATAATA
1 AATAATA
*
92492363 CATAAATA
1 AAT-AATA
92492371 AA-AATA
1 AATAATA
92492377 A
1 A
92492378 TATATATAAT
Statistics
Matches: 126, Mismatches: 10, Indels: 37
0.73 0.06 0.21
Matches are distributed among these distances:
5 8 0.06
6 20 0.16
7 39 0.31
8 37 0.29
9 22 0.17
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:92492268 original size:34 final size:34
Alignment explanation
Indices: 92492230--92492389 Score: 121
Period size: 38 Copynumber: 4.5 Consensus size: 34
92492220 AATAAATAAT
92492230 AAATAATAAAATAATATAATATATAATAAAATGA
1 AAATAATAAAATAATATAATATATAATAAAATGA
*
92492264 AAATAATATAATGAATA-ATATATATAATAAAATG-
1 AAATAATAAAAT-AATATA-ATATATAATAAAATGA
* * *
92492298 ATATAAT-ATATAATAAAATATATAAATAAAAT-A
1 AAATAATAAAATAATATAATATAT-AATAAAATGA
* * *
92492331 TAAATAAAATATAGATAATATAATAAATAATACATAAATAA
1 -AAAT--AATA-AAATAATATAATATATAAT--A-AAATGA
*
92492372 AAATAATATATATAATAT
1 AAATAATA-AAATAATAT
92492390 TTTTTACATA
Statistics
Matches: 103, Mismatches: 9, Indels: 24
0.76 0.07 0.18
Matches are distributed among these distances:
32 10 0.10
33 11 0.11
34 21 0.20
35 19 0.18
36 3 0.03
37 3 0.03
38 26 0.25
39 1 0.01
40 8 0.08
41 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (34 bp):
AAATAATAAAATAATATAATATATAATAAAATGA
Found at i:92492281 original size:38 final size:35
Alignment explanation
Indices: 92492230--92492389 Score: 138
Period size: 34 Copynumber: 4.5 Consensus size: 35
92492220 AATAAATAAT
92492230 AAATAATA-A-AATAATATAATATATAATAAAATGA
1 AAATAATATATAATAATAT-ATATATAATAAAATGA
92492264 AAAT-A-ATATAATGAATAATATATATAATAAAATG-
1 AAATAATATATAAT-AAT-ATATATATAATAAAATGA
* *
92492298 ATATAATATATAATAAAATATATA-AATAAAAT-A
1 AAATAATATATAATAATATATATATAATAAAATGA
* * *
92492331 TAAATAAAATATAGATAATATAATAAATAATACATAAATAA
1 -AAATAATATATA-ATAATAT-ATATATAAT--A-AAATGA
92492372 AAATAATATAT-ATAATAT
1 AAATAATATATAATAATAT
92492390 TTTTTACATA
Statistics
Matches: 104, Mismatches: 7, Indels: 26
0.76 0.05 0.19
Matches are distributed among these distances:
32 1 0.01
33 10 0.10
34 27 0.26
35 27 0.26
36 13 0.12
37 3 0.03
38 7 0.07
39 1 0.01
40 14 0.13
41 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (35 bp):
AAATAATATATAATAATATATATATAATAAAATGA
Found at i:92492349 original size:45 final size:44
Alignment explanation
Indices: 92492221--92492388 Score: 88
Period size: 47 Copynumber: 3.8 Consensus size: 44
92492211 ATACATAATA
*
92492221 ATAAATAATAA-ATAATAAAATA-ATATAATAT-AT-AATAA-A-
1 ATAAATAAAAATATAATAAAATATA-ATAATATAATAAATAATAT
* * * *
92492260 ATGAA-AATAATATAATGAATAATATATATAATAAAATGATATAATAT
1 ATAAATAAAAATATAAT-AA-AATATA-ATAATATAAT-AAATAATAT
* *
92492307 AT-AATAAAATATATAAATAAAATATAAATAAAAT-ATAGATAATAT
1 ATAAATAAAA-ATAT-AATAAAATAT-AATAATATAATAAATAATAT
*
92492352 AATAAATAATACATA-AATAAAA-ATAATATATATAATA
1 -ATAAATAA-AAATATAATAAAATATAATA-ATATAATA
92492389 TTTTTTACAT
Statistics
Matches: 102, Mismatches: 9, Indels: 30
0.72 0.06 0.21
Matches are distributed among these distances:
38 5 0.05
39 9 0.09
40 2 0.02
41 4 0.04
42 8 0.08
43 6 0.06
44 5 0.05
45 22 0.22
46 7 0.07
47 23 0.23
48 8 0.08
49 3 0.03
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (44 bp):
ATAAATAAAAATATAATAAAATATAATAATATAATAAATAATAT
Found at i:92492375 original size:79 final size:73
Alignment explanation
Indices: 92492215--92492388 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 73
92492205 AAAATTATAC
* * * *
92492215 ATAATAATA-AATAATAAATAATAAAATAATATAATATATAATAAAATGAAAATAATATAATGAA
1 ATAATAAAATAATAATATATAATAAAATAATATAAAATATAATAAAATGAAAATAATATAATAAA
*
92492279 TAATATAT
66 TAATACAT
*
92492287 ATAATAAAATGATATAATATATAATAAAATATATAAATAAAATATAAATAAAAT-ATAGATAATA
1 ATAATAAAAT-A-ATAATATATAATAAAATA-AT--ATAAAATAT-AATAAAATGA-AAATAATA
92492351 TAATAAATAATACAT
59 TAATAAATAATACAT
92492366 A-AATAAAAATAAT-ATATATAATA
1 ATAAT-AAAATAATAATATATAATA
92492389 TTTTTTACAT
Statistics
Matches: 87, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
72 8 0.09
74 1 0.01
75 17 0.20
76 12 0.14
77 2 0.02
78 13 0.15
79 34 0.39
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.32
Consensus pattern (73 bp):
ATAATAAAATAATAATATATAATAAAATAATATAAAATATAATAAAATGAAAATAATATAATAAA
TAATACAT
Found at i:92492673 original size:30 final size:30
Alignment explanation
Indices: 92492639--92492696 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
92492629 ATCATGGCCA
*
92492639 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
92492669 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
92492697 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:92494458 original size:36 final size:36
Alignment explanation
Indices: 92494418--92494489 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
92494408 GAGAAGAAGC
92494418 AACAAATGAGAATTCCTTAAATTAAAGAATCTTTTG
1 AACAAATGAGAATTCCTTAAATTAAAGAATCTTTTG
92494454 AACAAATGAGAATTCCTTAAATTAAAGAATCTTTTG
1 AACAAATGAGAATTCCTTAAATTAAAGAATCTTTTG
92494490 GTTCTTTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (36 bp):
AACAAATGAGAATTCCTTAAATTAAAGAATCTTTTG
Found at i:92498019 original size:61 final size:61
Alignment explanation
Indices: 92497924--92498044 Score: 215
Period size: 61 Copynumber: 2.0 Consensus size: 61
92497914 TCTACTACAC
*
92497924 CAATCCGCCTAGGTCTATGGATTACCTAAACAGAACAGACAACATATGTGAGTTTACATAT
1 CAATCCGCCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATAT
* *
92497985 CAATCTGCCTAGGTCTGTGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATA
1 CAATCCGCCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATA
92498045 AACTCAGTGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (61 bp):
CAATCCGCCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATAT
Found at i:92501380 original size:20 final size:20
Alignment explanation
Indices: 92501336--92501387 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
92501326 AGTAAATTAT
* *
92501336 ATTATTTTTTAAATTCTTTT
1 ATTATTTTTTAAAATCTTTA
92501356 A-TATTTTTATAAAAT-TTTA
1 ATTATTTTT-TAAAATCTTTA
92501375 ATTATTTATTTAA
1 ATTATTT-TTTAA
92501388 TTATTATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 11 0.41
20 14 0.52
21 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTATTTTTTAAAATCTTTA
Found at i:92503075 original size:26 final size:27
Alignment explanation
Indices: 92503017--92503077 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
92503007 AAATGACCCC
*
92503017 AATTTTTTTATTTTATTACTAGTATAT
1 AATTTTTTTATTATATTACTAGTATAT
** * *
92503044 GTTTTTTTTATTATATTAC-ATTTTAT
1 AATTTTTTTATTATATTACTAGTATAT
92503070 AATTTTTT
1 AATTTTTT
92503078 AAAAGGAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (27 bp):
AATTTTTTTATTATATTACTAGTATAT
Found at i:92504022 original size:6 final size:6
Alignment explanation
Indices: 92504007--92504035 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
92503997 TTTTTCGGGT
92504007 CAAA-C CAAACC CAAACC CAAACC CAAACC
1 CAAACC CAAACC CAAACC CAAACC CAAACC
92504036 TAACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAACC
Found at i:92505992 original size:25 final size:25
Alignment explanation
Indices: 92505958--92506008 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
92505948 TGTGGTGATA
92505958 AGGTCAGAGAACCCGCAACTGAACT
1 AGGTCAGAGAACCCGCAACTGAACT
92505983 AGGTCAGAGAACCCGCAACTGAACT
1 AGGTCAGAGAACCCGCAACTGAACT
92506008 A
1 A
92506009 TCTTTCAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.27, G:0.24, T:0.12
Consensus pattern (25 bp):
AGGTCAGAGAACCCGCAACTGAACT
Found at i:92506883 original size:1 final size:1
Alignment explanation
Indices: 92506877--92506910 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
92506867 AATTGATGTA
* *
92506877 TTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
92506911 GCAATAAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (1 bp):
T
Found at i:92511260 original size:44 final size:44
Alignment explanation
Indices: 92511147--92511308 Score: 132
Period size: 44 Copynumber: 3.7 Consensus size: 44
92511137 GCTAATTATG
* * * *
92511147 GGCACTTAGTGTGCGAAATCGAGATAACTGCAG--ATATATATT
1 GGCACTTAGTGTGCGAGATTGAGATAGCTTCAGCTATATATATT
** * * * *
92511189 AACACTTGGTGTACGAGACTGATATAGCTTCAGCTATATATATT
1 GGCACTTAGTGTGCGAGATTGAGATAGCTTCAGCTATATATATT
* *
92511233 GGCACTTAGTGTGCGTGATTGAGATAGC-TCCGACTATATATTTATT
1 GGCACTTAGTGTGCGAGATTGAGATAGCTTCAG-CTATATA--TATT
* * * *
92511279 GGCACTTATTGTGTGAGATCGATATAGCTT
1 GGCACTTAGTGTGCGAGATTGAGATAGCTT
92511309 TGGTTGTTTA
Statistics
Matches: 91, Mismatches: 23, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
42 23 0.25
43 3 0.03
44 37 0.41
46 27 0.30
47 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (44 bp):
GGCACTTAGTGTGCGAGATTGAGATAGCTTCAGCTATATATATT
Found at i:92512683 original size:40 final size:41
Alignment explanation
Indices: 92512638--92512733 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 41
92512628 CACACACCCA
*
92512638 TGTCCCTAGGCCGTGTCCTTCACATGGCAATGACA-GCCCG
1 TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
* * *
92512678 TGTCCCTGGGCTGTGTCCTTCACACGGCCATGACATGCCCG
1 TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
*
92512719 TGT-CCTAGCCCGTGT
1 TGTCCCTAGGCCGTGT
92512734 GTAAAAATCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 40 0.83
41 8 0.17
ACGTcount: A:0.14, C:0.35, G:0.26, T:0.25
Consensus pattern (41 bp):
TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
Found at i:92513490 original size:47 final size:48
Alignment explanation
Indices: 92513428--92513684 Score: 191
Period size: 46 Copynumber: 5.5 Consensus size: 48
92513418 CGATGCCACA
*
92513428 TCCCAAACATAGTCTTACACTAGCTCAT-ATCTC-ATG-TCGATGCCATG
1 TCCCAGACATAGTCTTACACTAGCTCATCATCTCGATGCT-GATG-CATG
* * *
92513475 TTCCAGACATGGTCTTTCACT-GACT-ATCATCTC-ATAGCTGATGCATG
1 TCCCAGACATAGTCTTACACTAG-CTCATCATCTCGAT-GCTGATGCATG
* * * * *
92513522 TCCCAGATAT-GTCTTACACTAGCTTA-CGTCTCGAGGCCGATGCATG
1 TCCCAGACATAGTCTTACACTAGCTCATCATCTCGATGCTGATGCATG
* *
92513568 TCCCAGACA-AGTCTTACACTAGCAC-TCGTCTCGATGCTGATGCCATG
1 TCCCAGACATAGTCTTACACTAGCTCATCATCTCGATGCTGATG-CATG
* * * * * *
92513615 TCCCAAACATGGTCTTATACTGGCTC-TCATAAT-G-TGGCTGATGCATA
1 TCCCAGACATAGTCTTACACTAGCTCATCAT-CTCGAT-GCTGATGCATG
*
92513662 TCCCTGACAT-GTCTTACACTAGC
1 TCCCAGACATAGTCTTACACTAGC
92513685 CCACAATAAC
Statistics
Matches: 170, Mismatches: 27, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
46 75 0.44
47 65 0.38
48 28 0.16
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
TCCCAGACATAGTCTTACACTAGCTCATCATCTCGATGCTGATGCATG
Found at i:92519954 original size:21 final size:21
Alignment explanation
Indices: 92519924--92519973 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
92519914 GAAATAGGGC
* *
92519924 ACACGTCCGTGTAGAAGAGCA
1 ACACGCCCGTATAGAAGAGCA
*
92519945 ACACGCCCGTATGGAAGAGCA
1 ACACGCCCGTATAGAAGAGCA
92519966 ACACGCCC
1 ACACGCCC
92519974 ATGTGGAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.10
Consensus pattern (21 bp):
ACACGCCCGTATAGAAGAGCA
Found at i:92519980 original size:21 final size:21
Alignment explanation
Indices: 92519937--92519981 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
92519927 CGTCCGTGTA
*
92519937 GAAGAGCAACACGCCCGTATG
1 GAAGAGCAACACGCCCATATG
*
92519958 GAAGAGCAACACGCCCATGTG
1 GAAGAGCAACACGCCCATATG
92519979 GAA
1 GAA
92519982 TTATTTCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.27, G:0.29, T:0.09
Consensus pattern (21 bp):
GAAGAGCAACACGCCCATATG
Found at i:92521647 original size:22 final size:22
Alignment explanation
Indices: 92521622--92521684 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
92521612 TTTGCAAGAA
*
92521622 TTTTCTTTTTGCCATTTGATGT
1 TTTTCTCTTTGCCATTTGATGT
*
92521644 TTTTCTCTTTGGCATTTGATGT
1 TTTTCTCTTTGCCATTTGATGT
92521666 TTTTCTCTTTGCCATTTGA
1 TTTTCTCTTTGCCATTTGA
92521685 GCTTAGTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (22 bp):
TTTTCTCTTTGCCATTTGATGT
Found at i:92526097 original size:42 final size:43
Alignment explanation
Indices: 92526032--92526128 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 43
92526022 TAATGATGGG
*
92526032 CACTTAGTGTGCAAAATCGAGATAACTTCGG-ATATATATTGA
1 CACTTAGTGTGCAAAACCGAGATAACTTCGGCATATATATTGA
* * * * *
92526074 CACTTGGTGTGCAAGACCTAGATAGCTTCGGCTATATATATTGG
1 CACTTAGTGTGCAAAACCGAGATAACTTCGGC-ATATATATTGA
92526118 CACTTAGTGTG
1 CACTTAGTGTG
92526129 TGTGATTGAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
42 26 0.57
44 20 0.43
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
CACTTAGTGTGCAAAACCGAGATAACTTCGGCATATATATTGA
Found at i:92526128 original size:44 final size:44
Alignment explanation
Indices: 92526030--92526218 Score: 163
Period size: 46 Copynumber: 4.3 Consensus size: 44
92526020 GCTAATGATG
* *
92526030 GGCACTTAGTGTGCAA-AATCGAGATAACTTCGG--ATATATATT
1 GGCACTTAGTGTGCAAGACT-GAGATAGCTTCGGCTATATATATT
* *
92526072 GACACTTGGTGTGCAAGACCT-AGATAGCTTCGGCTATATATATT
1 GGCACTTAGTGTGCAAGA-CTGAGATAGCTTCGGCTATATATATT
*** * *
92526116 GGCACTTAGTGTGTGTGATTGAGATAGCTTCAGCTAGATATATATT
1 GGCACTTAGTGTGCAAGACTGAGATAGCTTCGGCT--ATATATATT
** * * * *
92526162 GGCACTTAGTGTGTGAGATTGATATAGCTTCGGCTGTTTAT-TT
1 GGCACTTAGTGTGCAAGACTGAGATAGCTTCGGCTATATATATT
*
92526205 GGCACTTATTGTGC
1 GGCACTTAGTGTGC
92526219 GAGTCTCCCA
Statistics
Matches: 122, Mismatches: 18, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
42 25 0.20
43 16 0.13
44 40 0.33
46 41 0.34
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (44 bp):
GGCACTTAGTGTGCAAGACTGAGATAGCTTCGGCTATATATATT
Found at i:92526157 original size:46 final size:45
Alignment explanation
Indices: 92526062--92526217 Score: 176
Period size: 46 Copynumber: 3.5 Consensus size: 45
92526052 GATAACTTCG
* * ** *
92526062 GATATATATTGACACTTGGTGTGCAAGACCT-AGATAGCTTCGGCT
1 GATATATATTGGCACTTAGTGTGTGAGA-TTGAGATAGCTTCGGCT
* *
92526107 -ATATATATTGGCACTTAGTGTGTGTGATTGAGATAGCTTCAGCT
1 GATATATATTGGCACTTAGTGTGTGAGATTGAGATAGCTTCGGCT
*
92526151 AGATATATATTGGCACTTAGTGTGTGAGATTGATATAGCTTCGGCT
1 -GATATATATTGGCACTTAGTGTGTGAGATTGAGATAGCTTCGGCT
* *
92526197 G-TTTAT-TTGGCACTTATTGTG
1 GATATATATTGGCACTTAGTGTG
92526218 CGAGTCTCCC
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
43 15 0.16
44 39 0.41
45 1 0.01
46 41 0.43
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (45 bp):
GATATATATTGGCACTTAGTGTGTGAGATTGAGATAGCTTCGGCT
Found at i:92528764 original size:22 final size:22
Alignment explanation
Indices: 92528739--92528782 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
92528729 TAATCTTATA
92528739 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
92528761 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
92528783 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:92528893 original size:21 final size:20
Alignment explanation
Indices: 92528869--92528932 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
92528859 GAAAATATTC
92528869 AATATTAATATTTTAATAATA
1 AATATTAATA-TTTAATAATA
** *
92528890 AATATTAATA-ACAATTATA
1 AATATTAATATTTAATAATA
*
92528909 AATATAAATATATTAATAATA
1 AATATTAATAT-TTAATAATA
92528930 AAT
1 AAT
92528933 GTTTTGTAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AATATTAATATTTAATAATA
Found at i:92528895 original size:15 final size:15
Alignment explanation
Indices: 92528875--92528932 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 15
92528865 ATTCAATATT
*
92528875 AATATTTTAATAAT-
1 AATATATTAATAATA
*
92528889 AA-ATATTAATAA-C
1 AATATATTAATAATA
*
92528902 AAT-TATAAAT-ATA
1 AATATATTAATAATA
92528915 AATATATTAATAATA
1 AATATATTAATAATA
92528930 AAT
1 AAT
92528933 GTTTTGTAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
12 1 0.03
13 20 0.57
14 8 0.23
15 6 0.17
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:92535858 original size:39 final size:41
Alignment explanation
Indices: 92535794--92535878 Score: 138
Period size: 39 Copynumber: 2.1 Consensus size: 41
92535784 TAAAAGTTAA
92535794 AAAAAAATCCAAACTTCTCAAAAAAAAAATCTTCTTCCCTT
1 AAAAAAATCCAAACTTCTCAAAAAAAAAATCTTCTTCCCTT
*
92535835 AAAAAAATCCAAAC-TC-CATAAAAAAAATCTTCTTCCCTT
1 AAAAAAATCCAAACTTCTCAAAAAAAAAATCTTCTTCCCTT
*
92535874 CAAAA
1 AAAAA
92535879 GCAACAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 26 0.62
40 2 0.05
41 14 0.33
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (41 bp):
AAAAAAATCCAAACTTCTCAAAAAAAAAATCTTCTTCCCTT
Found at i:92537630 original size:23 final size:23
Alignment explanation
Indices: 92537581--92537636 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
92537571 AAATCCCCTC
* * *
92537581 AAAAAATTAGTAAATAATGATTG
1 AAAAAATTATTAAAAAATAATTG
92537604 AAAAAATTATTACAAAAATAATT-
1 AAAAAATTATTA-AAAAATAATTG
*
92537627 AAAACATTAT
1 AAAAAATTAT
92537637 CTTTTATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (23 bp):
AAAAAATTATTAAAAAATAATTG
Found at i:92537987 original size:19 final size:19
Alignment explanation
Indices: 92537963--92538001 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
92537953 TTACAGTGGA
*
92537963 TAGAAAAATTGACTCTTAT
1 TAGAAAAATCGACTCTTAT
92537982 TAGAAAAATCGACTCTTAT
1 TAGAAAAATCGACTCTTAT
92538001 T
1 T
92538002 GCTTTCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (19 bp):
TAGAAAAATCGACTCTTAT
Found at i:92539738 original size:30 final size:30
Alignment explanation
Indices: 92539686--92539758 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
92539676 AGATTGCACA
* **
92539686 AAAGATTT-CTTTCAGTCAAATCTTGCCAC
1 AAAGGTTTCCTTTCAGTCAAATCTCACCAC
**
92539715 AAAGGTTTCCTTTCAGTTGAATCTCACCAC
1 AAAGGTTTCCTTTCAGTCAAATCTCACCAC
92539745 AAAGGTGTTCCTTT
1 AAAGGT-TTCCTTT
92539759 TTTTTGCTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 7 0.19
30 23 0.62
31 7 0.19
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (30 bp):
AAAGGTTTCCTTTCAGTCAAATCTCACCAC
Found at i:92542780 original size:22 final size:20
Alignment explanation
Indices: 92542738--92542780 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
92542728 AATGGTATGA
**
92542738 TCAAAATTTAAATTTCGTTT
1 TCAAAATTTAAATTTAATTT
92542758 TCAATAATGTTAAATTTAATTT
1 TCAA-AAT-TTAAATTTAATTT
92542780 T
1 T
92542781 TTATTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (20 bp):
TCAAAATTTAAATTTAATTT
Found at i:92546406 original size:912 final size:912
Alignment explanation
Indices: 92544644--92546467 Score: 3612
Period size: 912 Copynumber: 2.0 Consensus size: 912
92544634 AGATACAAAT
92544644 ACTCACAAACGAGTAAAATGTCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCC
1 ACTCACAAACGAGTAAAATGTCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCC
92544709 TCTGTCCCAAACAAGGTCTTACACGAAATCATATACGATGCCGATGTCCTAGAAATGGCCTTATA
66 TCTGTCCCAAACAAGGTCTTACACGAAATCATATACGATGCCGATGTCCTAGAAATGGCCTTATA
*
92544774 CGTAAATCTCAAATTGAGGCTTGTGTCTCAGACACGGTCTTACACGATATCTCAGATCGATGTCC
131 CATAAATCTCAAATTGAGGCTTGTGTCTCAGACACGGTCTTACACGATATCTCAGATCGATGTCC
92544839 ACATTCCTTTAAATACATATAGAACTTTTCAGATACTAACATATTATTGGAAATTTACTCGAAAT
196 ACATTCCTTTAAATACATATAGAACTTTTCAGATACTAACATATTATTGGAAATTTACTCGAAAT
92544904 TCATTCATTAGGCTCTCAAGGCCGTCCAATACTGATTACAGTTTGAATATGCAGGATTTAGTCAA
261 TCATTCATTAGGCTCTCAAGGCCGTCCAATACTGATTACAGTTTGAATATGCAGGATTTAGTCAA
92544969 TTTAGCATGTAATTGTAATTTGACTTGCCTTGTACGGATTTCAGACAAAAACGAGTCAACTATTC
326 TTTAGCATGTAATTGTAATTTGACTTGCCTTGTACGGATTTCAGACAAAAACGAGTCAACTATTC
92545034 AACTATCTTGGACTTCCCTCGATCTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAA
391 AACTATCTTGGACTTCCCTCGATCTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAA
*
92545099 TTCAACCCTTCAACCATTCATTTCATTCAAAATAATACATGAACACATATTTAGGGCACTTTACA
456 TTCAACCCTTCAACCATTCATTTCATTCAAAATAATACATGAACACATATTTAGGGAACTTTACA
92545164 TTTTAGCCCTTATATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAACTATGTC
521 TTTTAGCCCTTATATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAACTATGTC
92545229 AAATTCACCAAGACTATAGCTTGGCTAAATATTCTTAGCTTCCATACAAGCCCAATTAACATATT
586 AAATTCACCAAGACTATAGCTTGGCTAAATATTCTTAGCTTCCATACAAGCCCAATTAACATATT
92545294 TAATTCACAATTTAGTCCTTCAAAATCTCATTTTCACAAATTAGCCCAAATACCTCTATTCCATC
651 TAATTCACAATTTAGTCCTTCAAAATCTCATTTTCACAAATTAGCCCAAATACCTCTATTCCATC
92545359 AAAATTCAAGAACACAACATGATAATCTCACATATATCTTTCATAATCCATAAAAAAAAAATCAC
716 AAAATTCAAGAACACAACATGATAATCTCACATATATCTTTCATAATCCATAAAAAAAAAATCAC
*
92545424 AAAGCTCATATAATCATCAATGGCACATTTCATAATCTTCAACAGAAACAAAAATTCAAAGATGG
781 AAAGCTCATATAATCATCAATGGCACATTTCATAATCTTCAACAGAAACAAAAATTCAAACATGG
92545489 GTTTTGAAGAACACGAAGCAACGATCACAGAAACGTAAAAATTATCAAAAACGGACCAAAGTACA
846 GTTTTGAAGAACACGAAGCAACGATCACAGAAACGTAAAAATTATCAAAAACGGACCAAAGTACA
92545554 TA
911 TA
*
92545556 ACTCACAAACGAGTAAAATGTCGATGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCC
1 ACTCACAAACGAGTAAAATGTCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCC
92545621 TCTGTCCCAAACAAGGTCTTACACGAAATCATATACGATGCCGATGTCCTAGAAATGGCCTTATA
66 TCTGTCCCAAACAAGGTCTTACACGAAATCATATACGATGCCGATGTCCTAGAAATGGCCTTATA
92545686 CATAAATCTCAAATTGAGGCTTGTGTCTCAGACACGGTCTTACACGATATCTCAGATCGATGTCC
131 CATAAATCTCAAATTGAGGCTTGTGTCTCAGACACGGTCTTACACGATATCTCAGATCGATGTCC
92545751 ACATTCCTTTAAATACATATAGAACTTTTCAGATACTAACATATTATTGGAAATTTACTCGAAAT
196 ACATTCCTTTAAATACATATAGAACTTTTCAGATACTAACATATTATTGGAAATTTACTCGAAAT
92545816 TCATTCATTAGGCTCTCAAGGCCGTCCAATACTGATTACAGTTTGAATATGCAGGATTTAGTCAA
261 TCATTCATTAGGCTCTCAAGGCCGTCCAATACTGATTACAGTTTGAATATGCAGGATTTAGTCAA
92545881 TTTAGCATGTAATTGTAATTTGACTTGCCTTGTACGGATTTCAGACAAAAACGAGTCAACTATTC
326 TTTAGCATGTAATTGTAATTTGACTTGCCTTGTACGGATTTCAGACAAAAACGAGTCAACTATTC
92545946 AACTATCTTGGACTTCCCTCGATCTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAA
391 AACTATCTTGGACTTCCCTCGATCTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAA
92546011 TTCAACCCTTCAACCATTCATTTCATTCAAAATAATACATGAACACATATTTAGGGAACTTTACA
456 TTCAACCCTTCAACCATTCATTTCATTCAAAATAATACATGAACACATATTTAGGGAACTTTACA
92546076 TTTTAGCCCTTATATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAACTATGTC
521 TTTTAGCCCTTATATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAACTATGTC
92546141 AAATTCACCAAGACTATAGCTTGGCTAAATATTCTTAGCTTCCATACAAGCCCAATTAACATATT
586 AAATTCACCAAGACTATAGCTTGGCTAAATATTCTTAGCTTCCATACAAGCCCAATTAACATATT
92546206 TAATTCACAATTTAGTCCTTCAAAATCTCATTTTCACAAATTAGCCCAAATACCTCTATTCCATC
651 TAATTCACAATTTAGTCCTTCAAAATCTCATTTTCACAAATTAGCCCAAATACCTCTATTCCATC
92546271 AAAATTCAAGAACACAACATGATAATCTCACATATATCTTTCATAATCCATAAAAAAAAAATCAC
716 AAAATTCAAGAACACAACATGATAATCTCACATATATCTTTCATAATCCATAAAAAAAAAATCAC
92546336 AAAGCTCATATAATCATCAATGGCACATTTCATAATCTTCAACAGAAACAAAAATTCAAACATGG
781 AAAGCTCATATAATCATCAATGGCACATTTCATAATCTTCAACAGAAACAAAAATTCAAACATGG
92546401 GTTTTGAAGAACACGAAGCAACGATCACAGAAACGTAAAAATTATCAAAAACGGACCAAAGTACA
846 GTTTTGAAGAACACGAAGCAACGATCACAGAAACGTAAAAATTATCAAAAACGGACCAAAGTACA
92546466 TA
911 TA
92546468 CCTTAATCAA
Statistics
Matches: 908, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
912 908 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (912 bp):
ACTCACAAACGAGTAAAATGTCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCC
TCTGTCCCAAACAAGGTCTTACACGAAATCATATACGATGCCGATGTCCTAGAAATGGCCTTATA
CATAAATCTCAAATTGAGGCTTGTGTCTCAGACACGGTCTTACACGATATCTCAGATCGATGTCC
ACATTCCTTTAAATACATATAGAACTTTTCAGATACTAACATATTATTGGAAATTTACTCGAAAT
TCATTCATTAGGCTCTCAAGGCCGTCCAATACTGATTACAGTTTGAATATGCAGGATTTAGTCAA
TTTAGCATGTAATTGTAATTTGACTTGCCTTGTACGGATTTCAGACAAAAACGAGTCAACTATTC
AACTATCTTGGACTTCCCTCGATCTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAA
TTCAACCCTTCAACCATTCATTTCATTCAAAATAATACATGAACACATATTTAGGGAACTTTACA
TTTTAGCCCTTATATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAACTATGTC
AAATTCACCAAGACTATAGCTTGGCTAAATATTCTTAGCTTCCATACAAGCCCAATTAACATATT
TAATTCACAATTTAGTCCTTCAAAATCTCATTTTCACAAATTAGCCCAAATACCTCTATTCCATC
AAAATTCAAGAACACAACATGATAATCTCACATATATCTTTCATAATCCATAAAAAAAAAATCAC
AAAGCTCATATAATCATCAATGGCACATTTCATAATCTTCAACAGAAACAAAAATTCAAACATGG
GTTTTGAAGAACACGAAGCAACGATCACAGAAACGTAAAAATTATCAAAAACGGACCAAAGTACA
TA
Found at i:92561542 original size:30 final size:30
Alignment explanation
Indices: 92561507--92561566 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
92561497 ACATACTAAA
92561507 GATTAACATAACATGATTTCTCAATCCAGC
1 GATTAACATAACATGATTTCTCAATCCAGC
92561537 GATTAACATAACATGATTTCTCAATCCAGC
1 GATTAACATAACATGATTTCTCAATCCAGC
92561567 AACCACATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (30 bp):
GATTAACATAACATGATTTCTCAATCCAGC
Found at i:92562330 original size:50 final size:49
Alignment explanation
Indices: 92562212--92562336 Score: 146
Period size: 49 Copynumber: 2.5 Consensus size: 49
92562202 GGTTTAATGT
* * *
92562212 CGATGCCATGTCCCAGACATGATCTTACACTGACTATAGAAATTGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATACAAATCGAAGC
* * *
92562261 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATACTCG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTAT-ACA-AATCGAAGC
*
92562311 CGATGCCATGTCCCAGACATAGTCTT
1 CGATGCCATGTCCCAGACATGGTCTT
92562337 TCGGATGCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 1 0.02
49 33 0.50
50 29 0.44
51 3 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATACAAATCGAAGC
Found at i:92568350 original size:47 final size:47
Alignment explanation
Indices: 92568296--92568425 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
92568286 TCAATCGATA
* *
92568296 AGTACCTATACCATGGCCCATAGGCAAATCAAGGTAACTTATC-CTAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCT-G
* * *
92568343 AGTACCTATACCATAGCCCATAGCCAAACCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCTG
* ** *
92568390 AATACCTATATTATGGCCCATATCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
92568426 TTATTCGCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 69 0.97
48 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.24
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCTG
Found at i:92570098 original size:33 final size:32
Alignment explanation
Indices: 92570056--92570118 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
92570046 GTTTCAATTA
*
92570056 GGATTTAGCCTGGACTGGTAATCCTAATTGACT
1 GGATTTAGCCTGGACAGGTAATCC-AATTGACT
*
92570089 GGATTTAGCCTGGACAGGTAATTCAATTGA
1 GGATTTAGCCTGGACAGGTAATCCAATTGA
92570119 ACTCTATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (32 bp):
GGATTTAGCCTGGACAGGTAATCCAATTGACT
Found at i:92571247 original size:16 final size:16
Alignment explanation
Indices: 92571228--92571258 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92571218 AAATAAATAT
92571228 GAGTATAAATTGTCAC
1 GAGTATAAATTGTCAC
92571244 GAGTATAAATTGTCA
1 GAGTATAAATTGTCA
92571259 TCTAAGGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (16 bp):
GAGTATAAATTGTCAC
Found at i:92571741 original size:20 final size:20
Alignment explanation
Indices: 92571703--92571741 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92571693 CTACACCTAG
*
92571703 GAAAAATTTTGAAATTTCTT
1 GAAAAATTTTGAAAGTTCTT
92571723 GAAAAATTTT-ATAAGTTCT
1 GAAAAATTTTGA-AAGTTCT
92571742 CGATTTAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
GAAAAATTTTGAAAGTTCTT
Found at i:92572602 original size:27 final size:27
Alignment explanation
Indices: 92572564--92572620 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
92572554 AATGATGTGA
92572564 GATTATTGATGACTATACTAATCAGTG
1 GATTATTGATGACTATACTAATCAGTG
92572591 GATTATTGATGACTATACTAATCAGTG
1 GATTATTGATGACTATACTAATCAGTG
92572618 GAT
1 GAT
92572621 CAGTGGATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (27 bp):
GATTATTGATGACTATACTAATCAGTG
Found at i:92572624 original size:8 final size:8
Alignment explanation
Indices: 92572611--92572644 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
92572601 GACTATACTA
92572611 ATCAGTGG
1 ATCAGTGG
92572619 ATCAGTGG
1 ATCAGTGG
92572627 ATCAGTGG
1 ATCAGTGG
92572635 ATCAGTGG
1 ATCAGTGG
92572643 AT
1 AT
92572645 TAGGTATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.26
Consensus pattern (8 bp):
ATCAGTGG
Found at i:92580068 original size:48 final size:48
Alignment explanation
Indices: 92579995--92580380 Score: 628
Period size: 48 Copynumber: 8.0 Consensus size: 48
92579985 CAAGATAAAT
* *
92579995 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
*
92580043 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
92580091 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
* * *
92580139 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATAAATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
*
92580187 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
* * *
92580235 ATATGTATATGTGGTAAAGCCGAATGGCTATTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
* *
92580283 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
* * * *
92580331 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
92580379 AT
1 AT
92580381 GTGTGTATAT
Statistics
Matches: 314, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 314 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
Found at i:92580246 original size:144 final size:144
Alignment explanation
Indices: 92579995--92580380 Score: 691
Period size: 144 Copynumber: 2.7 Consensus size: 144
92579985 CAAGATAAAT
92579995 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
1 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
* * *
92580060 AGCTGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTAT
*
92580125 GATATATGTATGAG
131 GAAATATGTATGAG
*
92580139 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATAAATGTATGAGATATGTATATGTGGTAA
1 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
*
92580204 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATTAT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTAT
92580269 GAAATATGTATGAG
131 GAAATATGTATGAG
*
92580283 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATTTGGTAA
1 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
* *
92580348 AGCCGAATGGCTAATGTGAAATATGTAGGAGAT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGAT
92580381 GTGTGTATAT
Statistics
Matches: 232, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 232 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (144 bp):
ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTAT
GAAATATGTATGAG
Found at i:92580575 original size:37 final size:37
Alignment explanation
Indices: 92580521--92580623 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
92580511 GGAAATATAT
*
92580521 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
92580558 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
92580595 TCCGGGTAAGACCCGATAACTACTTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
92580624 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:92582849 original size:20 final size:20
Alignment explanation
Indices: 92582812--92582850 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92582802 TGCACCTAGG
* * *
92582812 AAAAATTTTGAAATTTCTCA
1 AAAAAATTTAAAAGTTCTCA
92582832 AAAAAATTTAAAAGTTCTC
1 AAAAAATTTAAAAGTTCTC
92582851 GATTTAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAAAATTTAAAAGTTCTCA
Found at i:92584592 original size:20 final size:20
Alignment explanation
Indices: 92584567--92584606 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
92584557 ACGAAGAAAC
*
92584567 TTATTTTCATGTTTGTTTGT
1 TTATTTTCAAGTTTGTTTGT
*
92584587 TTATTTTTAAGTTTGTTTGT
1 TTATTTTCAAGTTTGTTTGT
92584607 GTTCAGTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.70
Consensus pattern (20 bp):
TTATTTTCAAGTTTGTTTGT
Found at i:92584729 original size:23 final size:24
Alignment explanation
Indices: 92584700--92584755 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
92584690 AATGTTTAAG
92584700 AACATGTTCATTTAAC-T-TAATTA
1 AACATGTTCA-TTAACATATAATTA
* *
92584723 AATATGTT-ATTAACATATAATTG
1 AACATGTTCATTAACATATAATTA
92584746 AACATGTTCA
1 AACATGTTCA
92584756 GGAACAACGT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 5 0.19
22 2 0.07
23 19 0.70
24 1 0.04
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (24 bp):
AACATGTTCATTAACATATAATTA
Found at i:92586473 original size:17 final size:17
Alignment explanation
Indices: 92586453--92586486 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
92586443 AGGTTTAGGT
92586453 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
92586470 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
92586487 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:92587520 original size:2 final size:2
Alignment explanation
Indices: 92587513--92587544 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
92587503 TCTGTTTCTG
92587513 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92587545 TATTTTCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92593807 original size:2 final size:2
Alignment explanation
Indices: 92593800--92593824 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
92593790 TGATTTACAA
92593800 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
92593825 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:92595592 original size:31 final size:31
Alignment explanation
Indices: 92595556--92595641 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
92595546 GGGCCGTATG
* *
92595556 GGCCACACGGGCGTGTGGGCCCATACAGATA
1 GGCCACATGGGCGTGTGGGCCCATACAGACA
* * * *
92595587 GGCCACATAGGCGTATGGGCCCACACGGACA
1 GGCCACATGGGCGTGTGGGCCCATACAGACA
* * *
92595618 GGCCATATGAGCGTGTGAGCCCAT
1 GGCCACATGGGCGTGTGGGCCCAT
92595642 TTAACTGAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.14
Consensus pattern (31 bp):
GGCCACATGGGCGTGTGGGCCCATACAGACA
Found at i:92596037 original size:30 final size:30
Alignment explanation
Indices: 92596003--92596062 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92595993 ACTTAACAAT
*
92596003 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
92596033 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
92596063 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:92615649 original size:21 final size:22
Alignment explanation
Indices: 92615611--92615653 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
92615601 ACGTTAGAAA
* *
92615611 TTTAAATTTTTTTAAAAATATT
1 TTTAAAATTTTGTAAAAATATT
92615633 TTTAAAATTTTGT-AAAATATT
1 TTTAAAATTTTGTAAAAATATT
92615654 ATAAATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTAAAATTTTGTAAAAATATT
Found at i:92615961 original size:10 final size:9
Alignment explanation
Indices: 92615937--92615988 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
92615927 TTCTCACTCC
92615937 TTTTATAAT
1 TTTTATAAT
92615946 TTTTATAAT
1 TTTTATAAT
92615955 GTTTTATAAAAT
1 -TTTTAT--AAT
* *
92615967 TTTAATATT
1 TTTTATAAT
92615976 TTTTA-AAT
1 TTTTATAAT
92615984 TTTTA
1 TTTTA
92615989 ATATATACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
8 7 0.19
9 15 0.42
10 6 0.17
11 5 0.14
12 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:92615977 original size:18 final size:18
Alignment explanation
Indices: 92615937--92615992 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
92615927 TTCTCACTCC
* *
92615937 TTTTATAATTTTTATAATG
1 TTTTATAAATTTT-TAATA
*
92615956 TTTTATAAAATTTTAATA
1 TTTTATAAATTTTTAATA
*
92615974 TTTTTTAAATTTTTAATA
1 TTTTATAAATTTTTAATA
92615992 T
1 T
92615993 ATACATATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTATAAATTTTTAATA
Found at i:92622599 original size:17 final size:17
Alignment explanation
Indices: 92622579--92622611 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
92622569 ACAAATACCT
92622579 TTAA-AATAATAATAAAA
1 TTAACAATAA-AATAAAA
92622596 TTAACAATAAAATAAA
1 TTAACAATAAAATAAA
92622612 TTTTATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAACAATAAAATAAAA
Found at i:92633656 original size:33 final size:33
Alignment explanation
Indices: 92633614--92633678 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
92633604 AAGTAATCTA
* *
92633614 AAATGACAAAACCCAACTTTCTACTTTATGGAG
1 AAATGACAAAAACCAACTTTCTACCTTATGGAG
*
92633647 AAATGACAAAAACCAGCTTTCTACCTTATGGA
1 AAATGACAAAAACCAACTTTCTACCTTATGGA
92633679 AAAGGGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (33 bp):
AAATGACAAAAACCAACTTTCTACCTTATGGAG
Found at i:92636959 original size:14 final size:14
Alignment explanation
Indices: 92636921--92636963 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
92636911 CAAAATGTAC
92636921 AATATAATTAAA-T
1 AATATAATTAAATT
92636934 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
92636949 AA-ATAATTTAATT
1 AATATAATTAAATT
92636962 AA
1 AA
92636964 CTGTTACCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:92640465 original size:2 final size:2
Alignment explanation
Indices: 92640453--92640485 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
92640443 TAAAAATGAT
*
92640453 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92640486 GTTTAACAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:92640541 original size:16 final size:16
Alignment explanation
Indices: 92640520--92640554 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
92640510 ATTTCAAGTC
92640520 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
92640536 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
92640552 TTA
1 TTA
92640555 GTCAAAGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (16 bp):
TTACAGCCTATTAATT
Found at i:92642527 original size:40 final size:40
Alignment explanation
Indices: 92642462--92642544 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
92642452 ACATCTTCAG
* *
92642462 TTGCACGTACTTTATCCGGGAAACTTATGTGCATGGATTC
1 TTGCACGTACTTTATCCCGGAAACTTATGTGCATGAATTC
92642502 TTGCACGTACTTTA-CCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTATCCCGGA-AACTTATGTGCATGAATTC
92642542 TTG
1 TTG
92642545 TGTACATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 5 0.12
40 35 0.88
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (40 bp):
TTGCACGTACTTTATCCCGGAAACTTATGTGCATGAATTC
Found at i:92645463 original size:39 final size:40
Alignment explanation
Indices: 92645409--92645490 Score: 141
Period size: 39 Copynumber: 2.1 Consensus size: 40
92645399 ACATCTTCAG
92645409 TTGCACGTACTTTACCCGGA-AACTTATGTGCAT-AGATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTGCATGA-ATTC
92645448 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
92645488 TTG
1 TTG
92645491 TGTACATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 20 0.49
40 20 0.49
41 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
Found at i:92646288 original size:18 final size:18
Alignment explanation
Indices: 92646265--92646304 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
92646255 TATAATTTTA
*
92646265 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
92646283 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
92646301 AAAA
1 AAAA
92646305 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:92646423 original size:30 final size:30
Alignment explanation
Indices: 92646387--92646449 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
92646377 ACTTAACAAG
92646387 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
92646417 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
92646447 CAA
1 CAA
92646450 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:92648890 original size:2 final size:2
Alignment explanation
Indices: 92648883--92648910 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92648873 TCTTTCAAAT
92648883 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92648911 AAACTTCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92657361 original size:12 final size:12
Alignment explanation
Indices: 92657339--92657368 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
92657329 TCTGTAACAG
92657339 CTTTGTTTTTCTT
1 CTTT-TTTTTCTT
92657352 CTTTTTTTTCTT
1 CTTTTTTTTCTT
92657364 CTTTT
1 CTTTT
92657369 GGTCATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:92670296 original size:33 final size:33
Alignment explanation
Indices: 92670254--92670321 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
92670244 ACTATAGAAG
92670254 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
92670287 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
92670320 AT
1 AT
92670322 GAATCATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (33 bp):
ATAGCCTGCATTAGATTTATTTATTTATTTATT
Found at i:92670314 original size:29 final size:30
Alignment explanation
Indices: 92670254--92670315 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 30
92670244 ACTATAGAAG
92670254 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAG---TATTTATTTATTTATT
92670287 ATAGCCTGCATTAG-ATTTATTTATTTATT
1 ATAGCCTGCATTAGTATTTATTTATTTATT
92670316 TATTATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 15 0.52
33 14 0.48
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (30 bp):
ATAGCCTGCATTAGTATTTATTTATTTATT
Found at i:92676296 original size:13 final size:13
Alignment explanation
Indices: 92676278--92676306 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
92676268 AACTAAGGTT
92676278 AAAATAGTAAATG
1 AAAATAGTAAATG
92676291 AAAATAGTAAATG
1 AAAATAGTAAATG
92676304 AAA
1 AAA
92676307 TAATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAATAGTAAATG
Found at i:92677822 original size:7 final size:7
Alignment explanation
Indices: 92677810--92677872 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
92677800 ACCTTATTTT
92677810 TATATTA
1 TATATTA
92677817 TATATTA
1 TATATTA
92677824 TA-ATTA
1 TATATTA
*
92677830 TTTTATTA
1 -TATATTA
92677838 TATATTA
1 TATATTA
92677845 TTTATATTA
1 --TATATTA
92677854 T-TATTA
1 TATATTA
* *
92677860 TCTATTG
1 TATATTA
92677867 TATATT
1 TATATT
92677873 GTTTTTCACA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 10 0.21
7 26 0.55
8 4 0.09
9 7 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (7 bp):
TATATTA
Done.