Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 321 of 444
Found at i:92677841 original size:16 final size:16
Alignment explanation
Indices: 92677812--92677860 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
92677802 CTTATTTTTA
92677812 TATTATATATTATA-AT
1 TATT-TATATTATATAT
92677828 TATTT-TATTATATAT
1 TATTTATATTATATAT
92677843 TATTTATATTAT-TAT
1 TATTTATATTATATAT
92677858 TAT
1 TAT
92677861 CTATTGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:92677865 original size:19 final size:18
Alignment explanation
Indices: 92677803--92677872 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
92677793 TTTTTTAACC
92677803 TTATT-TTTATATTATATA
1 TTATTATTTATATTAT-TA
* *
92677821 TTA-TAATTATTTTATTA
1 TTATTATTTATATTATTA
92677838 TATATTATTTATATTATTA
1 T-TATTATTTATATTATTA
92677857 TTATCTATTGTATATT
1 TTAT-TATT-TATATT
92677873 GTTTTTCACA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.09
18 16 0.37
19 17 0.40
20 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:92677959 original size:28 final size:24
Alignment explanation
Indices: 92677900--92677977 Score: 63
Period size: 25 Copynumber: 3.1 Consensus size: 24
92677890 ATTATTTTAC
92677900 ATTA-TTACTTGTATATTATTATT
1 ATTATTTACTTGTATATTATTATT
*
92677923 ATGTTTTTACTTGTATTATATATTTATT
1 AT-TATTTACTTGTA-TAT-TA-TTATT
*
92677951 AATTATTTA--TATATATTATGTATT
1 -ATTATTTACTTGTATATTAT-TATT
92677975 ATT
1 ATT
92677978 TTTTTTGCAT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
23 6 0.13
24 7 0.16
25 12 0.27
26 6 0.13
27 2 0.04
28 10 0.22
29 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (24 bp):
ATTATTTACTTGTATATTATTATT
Found at i:92678272 original size:28 final size:27
Alignment explanation
Indices: 92678241--92678306 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 27
92678231 TATATTTATA
*
92678241 TATATATTATATA-ATTATTTTATTATTT
1 TATATATTATATACA-TACTTT-TTATTT
* * *
92678269 TATAAATTCTTTTACATACTTTTTATTT
1 TATATATT-ATATACATACTTTTTATTT
92678297 TATATATTAT
1 TATATATTAT
92678307 TTTTTTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
27 1 0.03
28 20 0.67
29 8 0.27
30 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATATTATATACATACTTTTTATTT
Found at i:92681205 original size:25 final size:26
Alignment explanation
Indices: 92681168--92681219 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
92681158 TCAAACATGC
92681168 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
92681194 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
92681219 A
1 A
92681220 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:92682736 original size:25 final size:26
Alignment explanation
Indices: 92682702--92682809 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
92682692 CATGAAATTC
92682702 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
92682727 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92682753 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92682779 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92682804 TTATCA
1 TTATCA
92682810 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 47 0.59
26 33 0.41
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:92682791 original size:51 final size:51
Alignment explanation
Indices: 92682702--92682809 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
92682692 CATGAAATTC
92682702 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
* *
92682753 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-ATTATCATGAAACATTTACCTAACCCA
92682804 TTATCA
1 TTATCA
92682810 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
51 45 0.83
52 9 0.17
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:92686986 original size:25 final size:26
Alignment explanation
Indices: 92686949--92687000 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
92686939 TCAAACATGC
92686949 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
92686975 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
92687000 A
1 A
92687001 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:92688516 original size:25 final size:26
Alignment explanation
Indices: 92688482--92688589 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
92688472 CATGAAATTC
92688482 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
92688507 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
92688533 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92688559 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
92688584 TTATCA
1 TTATCA
92688590 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 47 0.59
26 33 0.41
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:92688571 original size:51 final size:51
Alignment explanation
Indices: 92688482--92688589 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
92688472 CATGAAATTC
92688482 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
* *
92688533 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-ATTATCATGAAACATTTACCTAACCCA
92688584 TTATCA
1 TTATCA
92688590 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
51 45 0.83
52 9 0.17
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:92693196 original size:23 final size:23
Alignment explanation
Indices: 92693144--92693209 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
92693134 CCTGATCAGT
*
92693144 ATACGACACATAAAATGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
* *
92693166 A-ACGACACATGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
92693188 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
92693210 TCGGTAAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 15 0.41
22 4 0.11
23 18 0.49
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:92696027 original size:26 final size:26
Alignment explanation
Indices: 92695996--92696103 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
92695986 TGAAATGCCC
*
92695996 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
92696022 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
92696048 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
92696074 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
92696100 ATCA
1 ATCA
92696104 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:92696686 original size:14 final size:15
Alignment explanation
Indices: 92696667--92696699 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
92696657 TATATATTAT
92696667 ATAA-TTCAATCAAA
1 ATAATTTCAATCAAA
*
92696681 ATAATTTCAATCAAT
1 ATAATTTCAATCAAA
92696696 ATAA
1 ATAA
92696700 ATTTAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATTTCAATCAAA
Found at i:92697372 original size:14 final size:14
Alignment explanation
Indices: 92697355--92697385 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
92697345 AGTAAAATAT
92697355 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
92697369 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
92697383 TTT
1 TTT
92697386 ACTTTTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:92697839 original size:46 final size:46
Alignment explanation
Indices: 92697786--92697914 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
92697776 AGAAATTAAT
* * *
92697786 AATATTATCCAAATGCATAATTAGTATTACACCACATGATAACAAC
1 AATATTATCCAAGTGCATAACTAATATTACACCACATGATAACAAC
92697832 AATATTATCCAAGTGCATAACTAATATTACACCACATGATAACAAC
1 AATATTATCCAAGTGCATAACTAATATTACACCACATGATAACAAC
* * *
92697878 AACATTGTCCAAGTGTATAACTAATATTACACCACAT
1 AATATTATCCAAGTGCATAACTAATATTACACCACAT
92697915 TAAAAGTATC
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (46 bp):
AATATTATCCAAGTGCATAACTAATATTACACCACATGATAACAAC
Found at i:92697873 original size:22 final size:23
Alignment explanation
Indices: 92697810--92697875 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 23
92697800 GCATAATTAG
92697810 TATTACACCACATGATAACAACAA
1 TATTACACCACATGATAAC-ACAA
* *
92697834 TATTA-TCCA-AGTGCATAAC-TAA
1 TATTACACCACA-TG-ATAACACAA
92697856 TATTACACCACATGATAACA
1 TATTACACCACATGATAACA
92697876 ACAACATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
22 13 0.38
23 10 0.29
24 11 0.32
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (23 bp):
TATTACACCACATGATAACACAA
Found at i:92698910 original size:32 final size:32
Alignment explanation
Indices: 92698864--92698924 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
92698854 TGTCAATCAT
92698864 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
92698896 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
92698925 CAATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:92700449 original size:15 final size:15
Alignment explanation
Indices: 92700429--92700468 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
92700419 TTCTCAAGCA
*
92700429 ATGACTAAAGTTACT
1 ATGACTAAAGTTACC
92700444 ATGACTAAAGTTACC
1 ATGACTAAAGTTACC
*
92700459 ATGATTAAAG
1 ATGACTAAAG
92700469 GGAATGGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (15 bp):
ATGACTAAAGTTACC
Found at i:92701202 original size:7 final size:7
Alignment explanation
Indices: 92701190--92701221 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
92701180 TATTTAATAC
92701190 AATATTT
1 AATATTT
92701197 AATATTT
1 AATATTT
*
92701204 AATAGTT
1 AATATTT
92701211 AATATTT
1 AATATTT
92701218 AATA
1 AATA
92701222 CTCATTCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (7 bp):
AATATTT
Found at i:92702899 original size:27 final size:28
Alignment explanation
Indices: 92702869--92702968 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
92702859 TTTAGTTTAC
92702869 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
92702896 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
92702923 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
92702950 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
92702969 CCGATTTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 54 0.86
28 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:92702968 original size:54 final size:54
Alignment explanation
Indices: 92702869--92702975 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
92702859 TTTAGTTTAC
* * *
92702869 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
92702923 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
92702976 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:92702994 original size:27 final size:27
Alignment explanation
Indices: 92702971--92703175 Score: 270
Period size: 27 Copynumber: 7.6 Consensus size: 27
92702961 AAGTACCCCC
*
92702971 GATTTACAGAATTA-TCGTTTTACCCCT
1 GATTTACAGAATTACT-GTTTTACCCTT
* **
92702998 GATTTACATAATTACTGTTTTACCCCC
1 GATTTACAGAATTACTGTTTTACCCTT
* *
92703025 GATTTACATAATTACAGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
* *
92703052 GACTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
92703079 GATTTACAGAATTA-TCGTTTTACCCTT
1 GATTTACAGAATTACT-GTTTTACCCTT
*
92703106 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
*
92703133 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTT
* *
92703160 GATTTATAAAATTACT
1 GATTTACAGAATTACT
92703176 AAAATACTCT
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
27 158 0.99
28 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACTGTTTTACCCTT
Found at i:92703196 original size:27 final size:27
Alignment explanation
Indices: 92703166--92703294 Score: 138
Period size: 27 Copynumber: 4.8 Consensus size: 27
92703156 CCTCGATTTA
* * *
92703166 TAAAATTACTAAAATACTCTTGGTTTG
1 TAAAATTACCAAAATACTCCTAGTTTG
92703193 TAAAATTACCAAAATACTCCTAGTTT-
1 TAAAATTACCAAAATACTCCTAGTTTG
*
92703219 TAAAATTACCAAAATAC-CACTGGTTTG
1 TAAAATTACCAAAATACTC-CTAGTTTG
* * * *
92703246 TGAAATTATCGAAATAC-CCTCAATTTG
1 TAAAATTACCAAAATACTCCT-AGTTTG
*
92703273 TAAAATTACCAAAATACCCCTA
1 TAAAATTACCAAAATACTCCTA
92703295 ATTTACAAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.01
26 25 0.29
27 57 0.66
28 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACTCCTAGTTTG
Found at i:92703233 original size:53 final size:54
Alignment explanation
Indices: 92703153--92703290 Score: 165
Period size: 53 Copynumber: 2.6 Consensus size: 54
92703143 ATTACTGTTT
* * * *
92703153 TACCCTCGATTTATAAAATTACTAAAATACTC-TTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATAC-CACTGGTTTGTAAAATTACCAAAA
* * * *
92703207 TACTCCT-AGTTT-TAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAA
1 TAC-CCTCAATTTGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAA
92703260 TACCCTCAATTTGTAAAATTACCAAAATACC
1 TACCCTCAATTTGTAAAATTACCAAAATACC
92703291 CCTAATTTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
52 4 0.06
53 41 0.57
54 24 0.33
55 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAA
Found at i:92703369 original size:27 final size:26
Alignment explanation
Indices: 92703326--92703381 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
92703316 CCCTTGACTT
92703326 TTTAAAAATTATAGAAATACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
92703352 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
92703379 TTT
1 TTT
92703382 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:92703465 original size:27 final size:27
Alignment explanation
Indices: 92703435--92703495 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
92703425 ACCCCTATTA
* *
92703435 GGTAAAAAGACTGTAACGCCCCTGTAG
1 GGTAAAAAGACCGTAACACCCCTGTAG
** * *
92703462 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAAAGACCGTAACACCCCTGTAG
92703489 GGTAAAA
1 GGTAAAA
92703496 TGATGAATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAACACCCCTGTAG
Found at i:92704264 original size:16 final size:16
Alignment explanation
Indices: 92704243--92704273 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92704233 CAAATATGGG
*
92704243 CATGACATTTTGCATA
1 CATGACATGTTGCATA
92704259 CATGACATGTTGCAT
1 CATGACATGTTGCAT
92704274 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:92704336 original size:26 final size:26
Alignment explanation
Indices: 92704307--92704481 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
92704297 GAGGAAGTGC
**
92704307 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
92704333 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
92704359 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
92704385 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
92704411 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
92704437 AAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
92704462 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92704482 ATTAAAGAGG
Statistics
Matches: 138, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.23
26 106 0.77
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:92704385 original size:52 final size:52
Alignment explanation
Indices: 92704307--92704481 Score: 327
Period size: 52 Copynumber: 3.4 Consensus size: 52
92704297 GAGGAAGTGC
92704307 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
92704359 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
92704411 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
92704462 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92704482 ATTAAAGAGG
Statistics
Matches: 122, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
50 10 0.08
51 24 0.20
52 88 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:92704807 original size:31 final size:31
Alignment explanation
Indices: 92704698--92704807 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
92704688 CGTTTACAGT
*
92704698 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
92704729 TAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
92704760 TAAGGCTTCGGCCCAGTGATATAATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
92704791 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
92704808 AACTGTTAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:92705932 original size:5 final size:5
Alignment explanation
Indices: 92705922--92705964 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
92705912 AAACTCAATG
* * *
92705922 GTTAT GTTAT GTTAT GTTAT GTTGT GTTAT GTTGT GTTGT GTT
1 GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTT
92705965 TGAATATGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (5 bp):
GTTAT
Found at i:92705942 original size:15 final size:15
Alignment explanation
Indices: 92705922--92705964 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
92705912 AAACTCAATG
*
92705922 GTTATGTTATGTTAT
1 GTTATGTTGTGTTAT
92705937 GTTATGTTGTGTTAT
1 GTTATGTTGTGTTAT
*
92705952 GTTGTGTTGTGTT
1 GTTATGTTGTGTT
92705965 TGAATATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (15 bp):
GTTATGTTGTGTTAT
Found at i:92707382 original size:18 final size:18
Alignment explanation
Indices: 92707356--92707417 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
92707346 ATTAAGGAAA
*
92707356 AATGGAAGAGATTTGAAG
1 AATGAAAGAGATTTGAAG
*
92707374 AATGAAAGAAGA--AGAAG
1 AATGAAAG-AGATTTGAAG
92707391 ACATGGAAA-A-ATTTGAAG
1 A-AT-GAAAGAGATTTGAAG
92707409 AATGAAAGA
1 AATGAAAGA
92707418 AAAAGAAGGC
Statistics
Matches: 35, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
16 5 0.14
17 9 0.26
18 14 0.40
19 7 0.20
ACGTcount: A:0.55, C:0.02, G:0.27, T:0.16
Consensus pattern (18 bp):
AATGAAAGAGATTTGAAG
Found at i:92707406 original size:35 final size:36
Alignment explanation
Indices: 92707357--92707425 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
92707347 TTAAGGAAAA
* *
92707357 ATGGAAGAGATTTGAAGAATGAAAGAAGAAGAAGAC
1 ATGGAAGAAATTTGAAGAATGAAAGAAAAAGAAGAC
92707393 ATGGAA-AAATTTGAAGAATGAAAGAAAAAGAAG
1 ATGGAAGAAATTTGAAGAATGAAAGAAAAAGAAG
92707426 GCAGAACGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 25 0.81
36 6 0.19
ACGTcount: A:0.57, C:0.01, G:0.28, T:0.14
Consensus pattern (36 bp):
ATGGAAGAAATTTGAAGAATGAAAGAAAAAGAAGAC
Found at i:92707723 original size:13 final size:14
Alignment explanation
Indices: 92707705--92707740 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
92707695 TTCAATTTTC
92707705 CCTTTCTTTCTT-T
1 CCTTTCTTTCTTCT
92707718 CCTTTCTTT-TTCT
1 CCTTTCTTTCTTCT
92707731 CC-TTCTTTCT
1 CCTTTCTTTCT
92707741 CCCCTGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
CCTTTCTTTCTTCT
Found at i:92707800 original size:23 final size:21
Alignment explanation
Indices: 92707767--92707809 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
92707757 GCCTATTTTG
*
92707767 TTTCTTTCTTTTTTTTGTTTC
1 TTTCTTTCTTTGTTTTGTTTC
92707788 TTTCATTTACTTTGTTTTGTTT
1 TTTC-TTT-CTTTGTTTTGTTT
92707810 TATATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.77
Consensus pattern (21 bp):
TTTCTTTCTTTGTTTTGTTTC
Found at i:92707817 original size:2 final size:2
Alignment explanation
Indices: 92707810--92707845 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
92707800 TGTTTTGTTT
92707810 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92707846 AGTTAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92707995 original size:31 final size:32
Alignment explanation
Indices: 92707937--92708000 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
92707927 CATACATTTG
*
92707937 TCATAATTTAATATATTTATTACATAAAAATC
1 TCATAATATAATATATTTATTACATAAAAATC
*
92707969 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTACATAAAAATC
92708000 T
1 T
92708001 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (32 bp):
TCATAATATAATATATTTATTACATAAAAATC
Found at i:92708257 original size:3 final size:3
Alignment explanation
Indices: 92708249--92708292 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
92708239 TCAATTTATT
92708249 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
92708293 GTTTAATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:92717200 original size:14 final size:14
Alignment explanation
Indices: 92717181--92717207 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92717171 ACTCAACTCA
92717181 AAAATAAATAAATT
1 AAAATAAATAAATT
92717195 AAAATAAATAAAT
1 AAAATAAATAAAT
92717208 ATGGGTTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATAAATAAATT
Found at i:92721667 original size:26 final size:26
Alignment explanation
Indices: 92721638--92721745 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
92721628 TGGTACAAAT
92721638 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
92721664 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92721690 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92721716 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92721742 TGAT
1 TGAT
92721746 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92722928 original size:8 final size:8
Alignment explanation
Indices: 92722915--92722944 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
92722905 AGATCGGCAC
92722915 AAGCCGAA
1 AAGCCGAA
92722923 AAGCCGAA
1 AAGCCGAA
92722931 AAGCCGAA
1 AAGCCGAA
92722939 AAGCCG
1 AAGCCG
92722945 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.27, G:0.27, T:0.00
Consensus pattern (8 bp):
AAGCCGAA
Found at i:92723057 original size:16 final size:16
Alignment explanation
Indices: 92723036--92723068 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92723026 CAGAGTGCGC
92723036 GATAATGGGCCAACGG
1 GATAATGGGCCAACGG
92723052 GATAATGGGCCAACGG
1 GATAATGGGCCAACGG
92723068 G
1 G
92723069 CCTAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.39, T:0.12
Consensus pattern (16 bp):
GATAATGGGCCAACGG
Found at i:92723401 original size:27 final size:27
Alignment explanation
Indices: 92723304--92723408 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
92723294 AGGAAGCGTC
*
92723304 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
92723331 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
92723358 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
92723385 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
92723409 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:92743688 original size:206 final size:206
Alignment explanation
Indices: 92743294--92746110 Score: 4634
Period size: 206 Copynumber: 13.7 Consensus size: 206
92743284 GTAGATCTGG
** *
92743294 CTGAAGCAAGATCCAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * * * * *
92743359 -ATTTTGGCTTTCACGTGCTTTCGATGAAGCAAATCTAAGATGATTTGACATCTCTCTATTGTCA
65 GA-TTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * * *
92743423 GTGAACAAATCAAAGTTTGGCGTCTCCATATTTGACGGAGAGCAGATACATAGCAGATCTAACCT
129 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCT
92743488 TCAGATGATTAGA
194 TCAGATGATTAGA
* *
92743501 CTGAAGCAGATCTAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
92743566 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
92743631 GAACAAATCAAAGTTTTGCGTCTCCATATTCGATGGAGGGCAGACACATAACAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92743696 AGATGATTAGA
196 AGATGATTAGA
* * *
92743707 CTGAAGTAGATCCAAGATGGTTTGTTATCCTTGTACTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * * * *
92743772 ATTTGGCTTTCGCGTGCTTTCGATGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
** * **
92743837 GAACAAATCGAAGTTTGGCGTCTCCATA-TCGACGGAGACCAGATACATAGCAGATCTGGCCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
* *
92743901 AGATGTTTATA
196 AGATGATTAGA
* * * * *
92743912 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-CATAGCT
* * ** * *
92743976 GATTTAGCTTTCATGTACTTACGCTGAAGTAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
92744041 AGAACAAATCGAAGTTTAGCATCTCTATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
92744106 CAGATGATTAGA
195 CAGATGATTAGA
* *
92744118 CTAAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAAGCAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGG-AGCAAATCGAAGACATAGCT
* * *
92744183 GATTTGGTTTGCGCGTGCTTACGCTGAAGCAAGTCTAAG-TGATTTGGCATATTTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
92744247 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
92744312 CAGATGATTAGA
195 CAGATGATTAGA
92744324 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
92744389 ATATGGTTTTCGCGTGCTTACGCTGAAGCAAGCCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
92744454 GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92744519 AGATGATTAGA
196 AGATGATTAGA
* *
92744530 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
92744595 ATTTGGTTTTTGCGTGCTTATGCTGAAGTAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
92744660 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92744725 AGATGATTAGA
196 AGATGATTAGA
* *
92744736 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAAGCAAATCAAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGG-AGCAAATCGAAGACATAGCT
* *
92744801 GATTTGGCTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
92744866 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
92744931 CAGATGATTAGA
195 CAGATGATTAGA
*
92744943 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAATGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
** *
92745008 AAATGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGACATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
** * * *
92745073 GAACAAATCGAAGTTTGGTATCTTCATATTCGATGGAGGGCAGACACATAGCAGATCTAACTTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92745138 AGATGATTAGA
196 AGATGATTAGA
* *
92745149 CTGAAGCAGATCTAAGATGGTTTGGTATCCTTGTGCTTACAACGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
92745214 ATTTGGTTTTCGCGTGCTTACGCTGAAGTAAGTCTAAGATGATTTGGCATCTCTATATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
92745279 GAACAAATCGAAGTTTGGCGTCTCTATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92745344 AGATGATTAGA
196 AGATGATTAGA
*
92745355 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
92745420 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGACATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
92745485 GAACAAATCAAAGTTTGGCGTTTCCATATTCTACGGAGGGCAGAAACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92745550 AGATGATTAGA
196 AGATGATTAGA
*
92745561 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
92745626 ATTTGGCTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
92745691 GAACAAATTGAAGTTTGGCGTCTTCATATTCTACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92745756 AGATGATTAGA
196 AGATGATTAGA
* *
92745767 ATGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
92745832 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTTTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
92745897 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
92745962 AGATGATTAGA
196 AGATGATTAGA
92745973 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
92746038 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
92746103 GAACAAAT
131 GAACAAAT
92746111 TGAATAAGCA
Statistics
Matches: 2429, Mismatches: 174, Indels: 15
0.93 0.07 0.01
Matches are distributed among these distances:
204 1 0.00
205 234 0.10
206 1940 0.80
207 253 0.10
208 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:92747836 original size:12 final size:11
Alignment explanation
Indices: 92747821--92747892 Score: 54
Period size: 12 Copynumber: 6.2 Consensus size: 11
92747811 TTATTTTTTA
92747821 TTATCATATATT
1 TTAT-ATATATT
* **
92747833 TTATCTATAAA
1 TTATATATATT
92747844 TTATATAATATT
1 TTATAT-ATATT
* *
92747856 GTATATCTTATT
1 TTATAT-ATATT
*
92747868 TTATATATTTCT
1 TTATATATAT-T
92747880 TTATATATATT
1 TTATATATATT
92747891 TT
1 TT
92747893 TTAAAATTGT
Statistics
Matches: 45, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
11 14 0.31
12 31 0.69
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:92748342 original size:21 final size:21
Alignment explanation
Indices: 92748318--92748358 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
92748308 TTTCTTATAT
*
92748318 TTTTATATATTATTTATTTTG
1 TTTTATATACTATTTATTTTG
*
92748339 TTTTTTATACTATTTATTTT
1 TTTTATATACTATTTATTTT
92748359 ACCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTATATACTATTTATTTTG
Found at i:92752251 original size:66 final size:66
Alignment explanation
Indices: 92752145--92752282 Score: 276
Period size: 66 Copynumber: 2.1 Consensus size: 66
92752135 TTTACTGTCT
92752145 AAATTAATAGGTTGAATGAAATTATTAATTTAGATCAATATCGAATGGAAAATCGAGGACAATGA
1 AAATTAATAGGTTGAATGAAATTATTAATTTAGATCAATATCGAATGGAAAATCGAGGACAATGA
92752210 A
66 A
92752211 AAATTAATAGGTTGAATGAAATTATTAATTTAGATCAATATCGAATGGAAAATCGAGGACAATGA
1 AAATTAATAGGTTGAATGAAATTATTAATTTAGATCAATATCGAATGGAAAATCGAGGACAATGA
92752276 A
66 A
92752277 AAATTA
1 AAATTA
92752283 TCAAAATGCC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 72 1.00
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (66 bp):
AAATTAATAGGTTGAATGAAATTATTAATTTAGATCAATATCGAATGGAAAATCGAGGACAATGA
A
Found at i:92752775 original size:33 final size:33
Alignment explanation
Indices: 92752724--92752801 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
92752714 CAGTGTTTAT
* * * *
92752724 ATGTAAGATCATAGTTGGGGTATGGCATTCT-G
1 ATGTAAGACCATAATTGGGGTATGGCACTATGG
*
92752756 ATGATAAGACCATAATTGGGTTATGGCACTATGG
1 ATG-TAAGACCATAATTGGGGTATGGCACTATGG
92752790 ATGTAAGACCAT
1 ATGTAAGACCAT
92752802 GGTTGGACCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.08
33 32 0.82
34 4 0.10
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (33 bp):
ATGTAAGACCATAATTGGGGTATGGCACTATGG
Found at i:92756813 original size:56 final size:56
Alignment explanation
Indices: 92756727--92756859 Score: 203
Period size: 56 Copynumber: 2.4 Consensus size: 56
92756717 ATGGCATCGA
* * * **
92756727 TATATTTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCCGT
* *
92756783 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCGTCGATATGTGACTCCGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCCGT
92756839 TATATGTGTGCGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
92756860 CTGTCTGGGA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCCGT
Found at i:92756882 original size:56 final size:56
Alignment explanation
Indices: 92756727--92756884 Score: 167
Period size: 56 Copynumber: 2.8 Consensus size: 56
92756717 ATGGCATCGA
* * * * * * **
92756727 TATATTTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
* * *
92756783 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCGTCGATATGTGACTCCGT
1 TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
**
92756839 TATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATAT
1 TATATGTGTGCGAGTAAGACCAC-GTCTAAGAC-GTTGGCATCGATAT
92756885 ATGATTACAA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
55 1 0.01
56 86 0.98
57 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
Found at i:92758103 original size:19 final size:19
Alignment explanation
Indices: 92758079--92758169 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
92758069 ATAATCTTCA
*
92758079 ATGATAGGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92758098 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92758117 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92758134 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92758152 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92758170 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92758117 original size:14 final size:15
Alignment explanation
Indices: 92758100--92758155 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
92758090 TCTTAGATAT
92758100 GATATG-CAATCTTA
1 GATATGACAATCTTA
92758114 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
92758131 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
92758149 GATATGA
1 GATATGA
92758156 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:92758150 original size:35 final size:37
Alignment explanation
Indices: 92758079--92758176 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
92758069 ATAATCTTCA
92758079 ATGATAGGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
92758117 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
92758152 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
92758177 ATTTGTAATC
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:92758201 original size:21 final size:22
Alignment explanation
Indices: 92758161--92758204 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
92758151 TATGATATGC
*
92758161 AATCTTAGAAGATATGATTTGT
1 AATCTTAGAAGATATAATTTGT
*
92758183 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
92758204 A
1 A
92758205 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:92758478 original size:16 final size:17
Alignment explanation
Indices: 92758457--92758489 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
92758447 ATGTTTCCCT
*
92758457 ATTTTTTTAT-ATTTTA
1 ATTTTTTAATAATTTTA
92758473 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
92758490 TTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:92763303 original size:40 final size:39
Alignment explanation
Indices: 92763237--92763340 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 39
92763227 AAATTGAATG
* * *
92763237 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
* * ***
92763276 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTATGCTAGAAACT
92763316 ATATCCGGGCTAAGGCCCGAAGGCA
1 ATATCCGGGCTAA-GCCCGAAGGCA
92763341 TTCGTGCGAG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
39 13 0.24
40 40 0.74
41 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
Found at i:92770506 original size:40 final size:39
Alignment explanation
Indices: 92770440--92770543 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 39
92770430 AAATTGAATG
* * *
92770440 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
* * ***
92770479 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTATGCTAGAAACT
92770519 ATATCCGGGCTAAGGCCCGAAGGCA
1 ATATCCGGGCTAA-GCCCGAAGGCA
92770544 TTCGTGCGAG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
39 13 0.24
40 40 0.74
41 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
Found at i:92779984 original size:78 final size:78
Alignment explanation
Indices: 92779876--92780171 Score: 452
Period size: 78 Copynumber: 3.8 Consensus size: 78
92779866 CGAAGAAACA
* *
92779876 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
92779941 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
92779954 GATTTGGCATTTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
92780019 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
92780032 GATTTGGCATCTCTATATTAGACTGG-GAGTAGATAGAAGACATAACAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCTATATTAGAC-GGAGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTG
92780095 AAGCAGATCCAAGAT
64 AAGCAGATCCAAGAT
* * *
92780110 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATT
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATT
92780172 TGTTTACATC
Statistics
Matches: 196, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
77 3 0.02
78 190 0.97
79 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:92780332 original size:89 final size:89
Alignment explanation
Indices: 92780203--92780369 Score: 262
Period size: 89 Copynumber: 1.9 Consensus size: 89
92780193 AAGATGACAT
* *
92780203 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATTGGAGATAACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
92780268 ACGGGGAGCAGATTGAAAAAGCAG
66 ACGGGGAGCAGATTGAAAAAGCAG
* * * * **
92780292 ATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACAGATTTGGTGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
92780357 ACGGGGAGCAGAT
66 ACGGGGAGCAGAT
92780370 CAAAGATAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 70 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG
ACGGGGAGCAGATTGAAAAAGCAG
Found at i:92780370 original size:45 final size:45
Alignment explanation
Indices: 92780110--92780383 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
92780100 GATCCAAGAT
* * *
92780110 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
92780157 GATCTGACCTTCATTTGT-TTACATC--GAAGCAGATCCAAGATGACA
1 GATTTG-GCATC-TCTGTATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * * *
92780202 TATTTGGCATCTCTGTATTAGACGAGGAGCAAATTGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
92780247 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAA-A-AAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAA-CA
* *
92780291 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
** * *
92780336 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
92780381 GAT
1 GAT
92780384 ATCGCCTTCC
Statistics
Matches: 185, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
43 7 0.04
44 45 0.24
45 103 0.56
46 2 0.01
47 16 0.09
48 7 0.04
49 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:92780754 original size:14 final size:15
Alignment explanation
Indices: 92780735--92780790 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
92780725 AATCTTCAAT
92780735 GATATG-CAATCTTA
1 GATATGACAATCTTA
92780749 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
92780766 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
92780784 GATATGA
1 GATATGA
92780791 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:92780779 original size:35 final size:37
Alignment explanation
Indices: 92780733--92780811 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
92780723 ATAATCTTCA
92780733 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
92780769 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
92780805 A-GATATG
1 ATGATATG
92780812 ATTTTATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:92780811 original size:17 final size:19
Alignment explanation
Indices: 92780733--92780804 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
92780723 ATAATCTTCA
92780733 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92780752 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92780769 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92780787 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92780805 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92792421 original size:24 final size:24
Alignment explanation
Indices: 92792394--92792532 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
92792384 GCTGGAAATA
92792394 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
92792418 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
92792442 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
92792466 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
92792490 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
92792514 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
92792533 ACATAATAAG
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:92792546 original size:72 final size:72
Alignment explanation
Indices: 92792393--92792554 Score: 245
Period size: 72 Copynumber: 2.2 Consensus size: 72
92792383 TGCTGGAAAT
* *
92792393 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
**
92792458 CGATTTA
66 CGACATA
* * *
92792465 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
92792530 CGAACATA
66 CG-ACATA
92792538 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
92792555 CACATTCGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 77 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
CGACATA
Found at i:92794483 original size:29 final size:28
Alignment explanation
Indices: 92794418--92794563 Score: 181
Period size: 29 Copynumber: 5.1 Consensus size: 28
92794408 ACATACATGC
92794418 ATATGGCCCA-CTAGGCCCAATCTCA-TTT
1 ATATGGCCCATC-AGGCCCAAT-TCACTTT
*
92794446 ATATGGCCCATCCGGCCCAATTCACGTTT
1 ATATGGCCCATCAGGCCCAATTCAC-TTT
*
92794475 ATATGGCCCATCAGGCCCAATTCACATTC
1 ATATGGCCCATCAGGCCCAATTCAC-TTT
*
92794504 ATATGGCCCATTAGGCCCAATCTCA-TTT
1 ATATGGCCCATCAGGCCCAAT-TCACTTT
* *
92794532 ATATGGCCCATCAGGCCCAAATCACATT
1 ATATGGCCCATCAGGCCCAATTCACTTT
92794560 ATAT
1 ATAT
92794564 TCATGCTCAC
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
27 6 0.06
28 45 0.43
29 50 0.48
30 3 0.03
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATTCACTTT
Found at i:92794533 original size:57 final size:55
Alignment explanation
Indices: 92794418--92794563 Score: 188
Period size: 57 Copynumber: 2.6 Consensus size: 55
92794408 ACATACATGC
* *
92794418 ATATGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTT
1 ATATGGCCCATC-AGGCCCAATCACA-TTATATGGCCCATCAGGCCCAATTCAC-TTT
*
92794475 ATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCA-TTT
1 ATATGGCCCATCAGGCCCAA-TCACATT-ATATGGCCCATCAGGCCCAAT-TCACTTT
92794532 ATATGGCCCATCAGGCCCAAATCACATTATAT
1 ATATGGCCCATCAGGCCC-AATCACATTATAT
92794564 TCATGCTCAC
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
56 4 0.05
57 48 0.59
58 26 0.32
59 3 0.04
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (55 bp):
ATATGGCCCATCAGGCCCAATCACATTATATGGCCCATCAGGCCCAATTCACTTT
Found at i:92794654 original size:18 final size:18
Alignment explanation
Indices: 92794631--92794666 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
92794621 TGGGCCCAAC
92794631 AGCCCA-TCAGACCCATTT
1 AGCCCATTCAG-CCCATTT
92794649 AGCCCATTCAGCCCATTT
1 AGCCCATTCAGCCCATTT
92794667 GGTCTATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.25, C:0.39, G:0.11, T:0.25
Consensus pattern (18 bp):
AGCCCATTCAGCCCATTT
Found at i:92794794 original size:16 final size:16
Alignment explanation
Indices: 92794773--92794831 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
92794763 GTAGCCAAAC
92794773 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
92794789 TTTCGACTTTTCAGCA
1 TTTCGACTTTTCGGCA
*
92794805 TTTCAACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
92794821 TTTCGGCTTTT
1 TTTCGACTTTT
92794832 GCAGATCTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.14, C:0.24, G:0.15, T:0.47
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:92796883 original size:593 final size:593
Alignment explanation
Indices: 92795152--92799353 Score: 6260
Period size: 593 Copynumber: 7.0 Consensus size: 593
92795142 GAGGAATACT
* * *
92795152 TACCAAAACCGCAAAACACCTAAGGAGCAATTCAACAGAGAGCTAAAATCCAAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
*
92795217 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGAAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
92795282 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATT-TGACTTTTCAG
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCT-ACTTTTCAG
*
92795346 CTTTCAAACTAATATGGTGTATAAGGTTTATTTGGCACAAATTAAAGGAGAAGGGTAGAAGAATG
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATT-AA--AG-A----AGAAG---G
*
92795411 AATCGGCTAACGCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAG
249 AATCGGCTAACCCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAG
*
92795476 CTAGCAAAGATGGAAAAGCCAATCCACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGAT
314 CTAGCAAAGATGGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGAT
* * *
92795541 CCCAAACTTAGTACATATTTAGAGCCTCTAGCCAAATTGTCTGACCCTCAACTCCCAATTCAGCT
379 CCCAAACTCAGCACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCT
92795606 CCATCACTTCCCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAA
444 CCATCACTTCCCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAA
92795671 TTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCA
509 TTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCA
92795736 AAATTAAACTCCTAAAAAAAA
574 AAATTAAACTCCT-AAAAAAA
* ** *
92795757 TACCAAAACTGCAAAACACCTAACAAGCAATTCGACAGAGAGCTAAAATTCTAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
**
92795822 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATTAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
* *
92795887 CAAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATTGGCCCAAGGGAGATT-TGACTTTTCAG
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCT-ACTTTTCAG
*
92795951 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGTACAAATTAAAGAAGAAGGAATCGGCTAAC
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAAC
*
92796016 CCAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGAT
260 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGAT
*
92796081 GGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAG
325 GGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
* *
92796146 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATCCAGCTCCATCACTT-C
390 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCC
92796210 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
455 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
* * *
92796275 GAACACTCCCCTTAGAGTCCATCTTCATGCCACTTCCAACCTTATAGAAGGACAAAATTAAACTC
520 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
92796340 CTAAAAAAA
585 CTAAAAAAA
* * * *
92796349 TACCAAAATCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAATTTCGACATTTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
92796414 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
92796479 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
92796544 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
92796609 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* *
92796674 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACACAAC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
92796739 ACATATTTAGAGCCTCTAGCCAAATTGCTTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
* *
92796804 TCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAAATTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
* *
92796869 AACACTCCCCTTAGAGTCTATCTTCACGCCACTTCCAACCTTCTAGAAGGCTAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
92796934 TAAAAAAA
586 TAAAAAAA
*
92796942 TACCAAAACCGCAAAACACCTAAGGAGCAA-TCTGATAGAGAGCTAAAA-TCTGAGATCTGATAC
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTC-GACAGAGAGCTAAAATTC-GAGATCTGATAC
* * *
92797005 TAATTCCCTACCAAAGTTGATTAAAAAATAGTGAGGGAGGGCAGTAATCAGTATTAACAATACTA
64 TAATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTA
* * *
92797070 GCCGAAAAAGAGATAAGGTACTTACACCAAAAGAGTAATCGGACCAAGGGAG-TT-TGACTTTTT
129 GCCGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCT-ACTTTTC
* *
92797133 AGCTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAA-AAGAAATCGACTA
193 AGCTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTA
* *
92797197 ACGCAAAGGGTAAATCAAAATAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAG
258 ACCCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAG
*
92797262 ATGGAAAAGCCAATCGACACTATAAAAAAAATGAAGAATTTGGCATTAGCCTAGAATCCCAAACG
323 ATGGAAAAGCCAATCGACACTAT-AAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAAC-
* * * * ** * * * * *
92797327 TAAATGAAGA-ATTTGGCATTAGCCTAGAATCCCAAACTTAGTACATATTTAGAGCCTCTA-GCC
386 T-CA-GCACATATTT---A-GAGCCT-CTA-GCCAAA-TT-G--C----CT-GACCCTCAACTCC
* * *** ** *
92797390 AAATT--GCCTGACCCTCAAC-TCCTAATTCAGTTCCATCACTTCC-CCCTTCTCATCTCCTCGT
434 CAATTCAG-CT--CCATC-ACTTCCCCCTTC---T-CAT--C-TCCTCGTTTTTC-TC-CCT-G-
* ** ** * * * ** ** * * * *
92797451 TTTTCTCCCTGAT-AACTCTCC--AATCTATT-TC--CTAAATTTTCTCTTCTGAACACTCC-CC
484 ATAACTCCCCAATCTA-TTTCCTAAAT-T-TTCTCTTCTGAA--CACTCCCCT-TAGAGTCCATC
* ** * *** * **
92797509 TT-AGAGTCCATCTTCACGCCACTTCCA-ACCTTCTAGAAGGCCAAAATTAAACTCCTAAAAAAA
543 TTCA-CG-CCA-CTTC-CAAC-CTTCTAGA-AGGCCA-AA----ATTA---AACTCCT-AAAAAA
92797572 A
593 A
92797573 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* * *
92797638 ATTCCCTACAAAAGTTGATTAAAAAAGAGTGAGGGAGAGGAGTAATCAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
* * *
92797703 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGCAATCGACCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
* * *
92797768 TTTCAAACTAATACGGTGAATAAGGATTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
* *
92797833 CAAAAGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATTAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* *
92797898 GAAAAGCCAATAGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
92797963 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
92798028 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
* *
92798093 AACACTCACCTTAGAGTCCATCTTCATGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
92798158 TAAAAAAAA
586 T-AAAAAAA
* *
92798167 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGATAGAGAGCTAAAATTCGACATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
92798232 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
*
92798297 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAG-TTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
*
92798361 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATTGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
* * * *
92798426 CAAAGAGTAAATCGAAAGAGATTTGAAGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* *
92798491 GAAAAGCCAATCGACGCTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAAGTCAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
* * * *
92798556 ACATATTTAAAGCCTTTAGCCAAATTGCCTGACCCTCAACTCCAAATTCAGCTCCATTACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
92798621 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
92798686 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCTAACCTTCTAGAAGGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
92798751 TAAAAAAA
586 TAAAAAAA
* * *
92798759 TACCAAAATCGTAAAACACCTAAGGAGCAATTCGATAGAGAGCTAAAATTCGAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* *
92798824 ATTCCTTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGACTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
* *
92798889 CGAAAAAGAGATATGGTACTTACCCCAAAAGAGTAATCGGCCCAAAGGAGATTCTACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
* *
92798954 TTTCAAACTAATATAGTGAATATGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
*
92799019 CAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* * * *
92799084 GAAAAGCCAATCGACACTA-AAAAAAATAAACAATTTGGAATTAGCCTAGGATCTCAAACTCAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
* * *
92799148 ACATATTTAGGGCCTCTAGCCAAATTGCCTAACCCTCAATTCCCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
*
92799213 CCTTCTCATCTCCTCGTTTTTCTCCCTAATAACT-CCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
92799277 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATCAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
92799342 TTAAAAAAA
586 -TAAAAAAA
92799351 TAC
1 TAC
92799354 TAAGCTAGGA
Statistics
Matches: 3277, Mismatches: 238, Indels: 177
0.89 0.06 0.05
Matches are distributed among these distances:
591 191 0.06
592 861 0.26
593 966 0.29
594 391 0.12
595 2 0.00
597 8 0.00
598 5 0.00
599 1 0.00
600 5 0.00
601 5 0.00
602 10 0.00
603 3 0.00
604 7 0.00
605 246 0.08
606 15 0.00
607 9 0.00
608 17 0.01
609 23 0.01
610 2 0.00
611 3 0.00
612 2 0.00
613 3 0.00
614 2 0.00
615 23 0.01
616 15 0.00
617 8 0.00
618 15 0.00
619 21 0.01
620 5 0.00
621 3 0.00
622 9 0.00
623 4 0.00
624 5 0.00
625 1 0.00
626 5 0.00
627 3 0.00
629 3 0.00
630 12 0.00
631 173 0.05
632 100 0.03
633 95 0.03
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (593 bp):
TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCTACTTTTCAGC
TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
TAAAAAAA
Found at i:92797341 original size:38 final size:38
Alignment explanation
Indices: 92797290--92797363 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
92797280 ACTATAAAAA
92797290 AAATGAAGAATTTGGCATTAGCCTAGAATCCCAAACGT
1 AAATGAAGAATTTGGCATTAGCCTAGAATCCCAAACGT
92797328 AAATGAAGAATTTGGCATTAGCCTAGAATCCCAAAC
1 AAATGAAGAATTTGGCATTAGCCTAGAATCCCAAAC
92797364 TTAGTACATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.23
Consensus pattern (38 bp):
AAATGAAGAATTTGGCATTAGCCTAGAATCCCAAACGT
Found at i:92811392 original size:19 final size:19
Alignment explanation
Indices: 92811368--92811465 Score: 128
Period size: 19 Copynumber: 5.2 Consensus size: 19
92811358 AATCTTTAAG
92811368 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
92811387 GATATGTAATATTAGATAT
1 GATATGCAATCTTAGATAT
*
92811406 GATA--CAATATTAGATAT
1 GATATGCAATCTTAGATAT
*
92811423 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAT
92811442 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
92811463 GAT
1 GAT
92811466 CTTGTAATCT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
17 16 0.23
19 45 0.65
21 8 0.12
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:92811420 original size:36 final size:36
Alignment explanation
Indices: 92811374--92811445 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
92811364 TAAGGATATG
* * *
92811374 CAATCTTAGATATGATATGTAATATTAGATATGATA
1 CAATATTAGATATGATATGCAATATTAGATACGATA
*
92811410 CAATATTAGATATGATATGCAATCTTAGATACGATA
1 CAATATTAGATATGATATGCAATATTAGATACGATA
92811446 TGCAATCTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (36 bp):
CAATATTAGATATGATATGCAATATTAGATACGATA
Found at i:92817045 original size:1 final size:1
Alignment explanation
Indices: 92817039--92817088 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
92817029 CTTCTATTTC
* * * * *
92817039 AAAAAAAAAAAGAAAAAGAAAAAGAGAAAAAAAAAAAGAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
92817089 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:92817066 original size:14 final size:12
Alignment explanation
Indices: 92817039--92817087 Score: 80
Period size: 12 Copynumber: 3.9 Consensus size: 12
92817029 CTTCTATTTC
92817039 AAAAAAAAAAAG
1 AAAAAAAAAAAG
92817051 AAAAAGAAAAAGAG
1 AAAAA-AAAAA-AG
92817065 AAAAAAAAAAAG
1 AAAAAAAAAAAG
92817077 AAAAAAAAAAA
1 AAAAAAAAAAA
92817088 ATGGAGAGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
12 18 0.51
13 10 0.29
14 7 0.20
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:92817088 original size:14 final size:13
Alignment explanation
Indices: 92817039--92817088 Score: 75
Period size: 14 Copynumber: 3.8 Consensus size: 13
92817029 CTTCTATTTC
92817039 AAAAAAAAAAAG-
1 AAAAAAAAAAAGA
*
92817051 AAAAAGAAAAAGA
1 AAAAAAAAAAAGA
92817064 GAAAAAAAAAAAGA
1 -AAAAAAAAAAAGA
92817078 AAAAAAAAAAA
1 AAAAAAAAAAA
92817089 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 11 0.32
13 11 0.32
14 12 0.35
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:92819045 original size:40 final size:40
Alignment explanation
Indices: 92818986--92819193 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
92818976 CAATTGAATG
* * * *
92818986 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
92819026 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCAACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
92819066 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
92819106 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
92819146 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
92819186 ATATCCGG
1 ATATCCGG
92819194 TTATATTCCG
Statistics
Matches: 141, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:92821408 original size:84 final size:84
Alignment explanation
Indices: 92821263--92821873 Score: 988
Period size: 84 Copynumber: 7.3 Consensus size: 84
92821253 CAAAATTCAG
*
92821263 CGCCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
92821328 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* **
92821347 CGCATTAATCCCCTAAATAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
92821412 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAGACT
92821431 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
92821496 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
92821515 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
92821580 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
92821599 CGCCTTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCG-AGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
92821658 GCGGAGCAGATCGATGACGACT
66 GTGGAGCAGATCGA--A-GACT
*
92821680 CGCCTTAATCCCCTAAGCAGTAGGGTAACGGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
92821745 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
92821764 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
92821827 GCGGAGCAGATCGAAGAACAT
66 GTGGAGCAGATCGAAG-AC-T
*
92821848 GCACCTTAA-CCCCTAAGCAGTAGGGT
1 -CGCCTTAATCCCCTAAGCAGTAGGGT
92821874 CCAAGATGAT
Statistics
Matches: 492, Mismatches: 23, Indels: 24
0.91 0.04 0.04
Matches are distributed among these distances:
78 36 0.07
79 3 0.01
80 1 0.00
81 34 0.07
82 28 0.06
83 2 0.00
84 341 0.69
85 8 0.02
86 3 0.01
87 36 0.07
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:92821658 original size:37 final size:37
Alignment explanation
Indices: 92821389--92821671 Score: 121
Period size: 41 Copynumber: 7.0 Consensus size: 37
92821379 TTAAATTTGC
*
92821389 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGA
* * *
92821426 AAACTCGCCTTAATC-CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGC
1 AGA-T---CTT-ATCTCCCTAAGCAGTAGTGG-AACA-G----A-TCGA
*
92821473 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGA
* * *
92821510 AGACTCGCCTTAATC-CCCTAAGCGGTAG-GGTAACAGGTTAAATTTGC
1 AGA-T---CTT-ATCTCCCTAAGCAGTAGTGG-AACA-G----A-TCGA
*
92821557 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGA
* *
92821594 AGACTCGCCTTAATC-CCCTAAGTAGTAG-GGTAACAGGTTCG-
1 AGA-T---CTT-ATCTCCCTAAGCAGTAGTGG-AACA-GATCGA
* *
92821635 AGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGA
92821672 TGACGACTCG
Statistics
Matches: 186, Mismatches: 22, Indels: 76
0.65 0.08 0.27
Matches are distributed among these distances:
36 7 0.04
37 30 0.16
38 7 0.04
40 7 0.04
41 58 0.31
42 23 0.12
43 37 0.20
44 4 0.02
46 4 0.02
47 9 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (37 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGA
Found at i:92821745 original size:43 final size:43
Alignment explanation
Indices: 92821690--92821827 Score: 126
Period size: 41 Copynumber: 3.3 Consensus size: 43
92821680 CGCCTTAATC
*
92821690 CCCTAAGCAGTAGGGTAACGGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * ** *** * *
92821733 CCCTAAGCAGTAGTGG-AGCAGATCGAA-GACCCG-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGATCTT-ATCT
92821774 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--T
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
92821815 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
92821828 CGGAGCAGAT
Statistics
Matches: 70, Mismatches: 19, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
40 2 0.03
41 36 0.51
42 8 0.11
43 22 0.31
44 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:92821789 original size:249 final size:248
Alignment explanation
Indices: 92821263--92821873 Score: 989
Period size: 249 Copynumber: 2.4 Consensus size: 248
92821253 CAAAATTCAG
*
92821263 CGCCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
92821328 GTGGAGCAGATCGAAGACTCGCATTAATCCCCTAAATAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGG----ATTCGCAGAT
*
92821393 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTA
127 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTA
*
92821458 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
192 ACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
*
92821515 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
92821580 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGG-TTCG-AGATCTTA
66 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGATTCGCAGATCTTA
*
92821643 TCTCCCTAAGCAGTAGCGGAGCAGATCGATGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAA
131 TCTCCCTAAGCAGTAGCGGAGCAGATCGA--A-AACTCGCCTTAATCCCCTAAGCAGTAGGGTAA
*
92821708 CGGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
193 CAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
92821764 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
92821827 GCGGAGCAGATCGAAGAACATGCACCTTAA-CCCCTAAGCAGTAGGGT
66 GTGGAGCAGATCGAAG-AC-T-CGCCTTAATCCCCTAAGTAGTAGGGT
92821874 CCAAGATGAT
Statistics
Matches: 340, Mismatches: 13, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
246 36 0.11
247 31 0.09
248 3 0.01
249 151 0.44
250 7 0.02
252 112 0.33
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (248 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGATTCGCAGATCTTA
TCTCCCTAAGCAGTAGCGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAG
GTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACC
Found at i:92822205 original size:32 final size:32
Alignment explanation
Indices: 92822167--92822230 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
92822157 TTACGTGTTT
92822167 ACGCTGAAGCAGATCTAAGATGATTTGGCATC
1 ACGCTGAAGCAGATCTAAGATGATTTGGCATC
92822199 ACGCTGAAGCAGATCTAAGATGATTTGGCATC
1 ACGCTGAAGCAGATCTAAGATGATTTGGCATC
92822231 TCTGTAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (32 bp):
ACGCTGAAGCAGATCTAAGATGATTTGGCATC
Found at i:92822663 original size:19 final size:19
Alignment explanation
Indices: 92822639--92822717 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
92822629 AATCTTTAAG
92822639 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
92822658 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
92822677 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
92822694 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
92822715 GAT
1 GAT
92822718 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:92822686 original size:36 final size:37
Alignment explanation
Indices: 92822645--92822717 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
92822635 TAAGGATATG
92822645 CAATCTTAGATATGATATGCAATATT-AGATATGATA
1 CAATCTTAGATATGATATGCAATATTAAGATATGATA
*
92822681 CAATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATT-AAGATATGAT
92822718 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
38 9 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATTAAGATATGATA
Found at i:92824235 original size:35 final size:37
Alignment explanation
Indices: 92824164--92824261 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
92824154 ATAATCTTCA
92824164 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
92824202 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
92824237 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
92824262 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:92824261 original size:17 final size:19
Alignment explanation
Indices: 92824164--92824254 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
92824154 ATAATCTTCA
92824164 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92824183 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92824202 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92824219 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92824237 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92824255 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92824280 original size:22 final size:22
Alignment explanation
Indices: 92824164--92824277 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
92824154 ATAATCTTCA
92824164 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92824183 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92824202 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92824219 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92824237 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
92824259 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
92824278 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:92824568 original size:17 final size:17
Alignment explanation
Indices: 92824544--92824578 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
92824534 TGTTTACCGG
*
92824544 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
92824562 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
92824579 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:92830812 original size:38 final size:38
Alignment explanation
Indices: 92830761--92830833 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
92830751 GAATGGGCTG
92830761 TTCTTATGCGAATGTTACTAAGTCGGCTATAAGTCTGC
1 TTCTTATGCGAATGTTACTAAGTCGGCTATAAGTCTGC
*
92830799 TTCTTATGCGAATGTTACTAAGTCGGCTGTAAGTC
1 TTCTTATGCGAATGTTACTAAGTCGGCTATAAGTC
92830834 ATTTCTTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (38 bp):
TTCTTATGCGAATGTTACTAAGTCGGCTATAAGTCTGC
Found at i:92831682 original size:54 final size:55
Alignment explanation
Indices: 92831565--92831699 Score: 236
Period size: 54 Copynumber: 2.5 Consensus size: 55
92831555 AAGAATTCAG
* * *
92831565 GGTGAAAACCTGCAAAGGGCGTCTTGAGTTTTCGAAAAAAAAATGGAGAGGCCAA
1 GGTGAAAACCCGCAAAGGGCGCCTTGAGTTTTCGAAAAAAAAATAGAGAGGCCAA
92831620 GGTGAAAACCCGCAAAGGGCGCCTTGAGTTTTCG-AAAAAAAATAGAGAGGCCAA
1 GGTGAAAACCCGCAAAGGGCGCCTTGAGTTTTCGAAAAAAAAATAGAGAGGCCAA
92831674 GGTGAAAACCCGCAAAGGGCGCCTTG
1 GGTGAAAACCCGCAAAGGGCGCCTTG
92831700 TGACCAAAGG
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
54 45 0.58
55 32 0.42
ACGTcount: A:0.36, C:0.19, G:0.30, T:0.16
Consensus pattern (55 bp):
GGTGAAAACCCGCAAAGGGCGCCTTGAGTTTTCGAAAAAAAAATAGAGAGGCCAA
Found at i:92832998 original size:78 final size:78
Alignment explanation
Indices: 92832885--92833178 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 78
92832875 CGAAGAAACA
* ** * * *
92832885 GATTTAGCATCTCCATATTCGAC-GGAAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
92832949 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * **
92832962 GATTTGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
92833027 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* * *
92833040 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACATAACAGAT-TGAACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTG-ACCTTCATTGA
*
92833104 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
92833118 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACAGATCTAACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
92833179 GTGTTTACAT
Statistics
Matches: 191, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
77 20 0.10
78 170 0.89
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:92833325 original size:88 final size:90
Alignment explanation
Indices: 92833208--92833390 Score: 298
Period size: 88 Copynumber: 2.1 Consensus size: 90
92833198 TCCAAGATGA
*
92833208 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAT-ACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
*
92833272 TAGACGGGGAGCAGATTAAA-AAAG
66 TAGACGGGGAGCAGATCAAAGAAAG
* * *
92833296 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
*
92833361 TAGACGGGGAGCAGATCAAAGATAG
66 TAGACGGGGAGCAGATCAAAGAAAG
92833386 CAGAT
1 CAGAT
92833391 ATCGCCTTCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
88 40 0.46
89 39 0.45
90 8 0.09
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.25
Consensus pattern (90 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATCAAAGAAAG
Found at i:92833360 original size:45 final size:45
Alignment explanation
Indices: 92833118--92833390 Score: 288
Period size: 45 Copynumber: 6.1 Consensus size: 45
92833108 GATCCAAGAT
*
92833118 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* ** * * * * * *
92833165 GATCTAACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
92833210 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAT-ACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
92833254 GATTTGGCATCTCTGTATTAGACGGGGAGCAGAT-TAA-AAAAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAA-CA
*
92833298 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
92833343 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
92833388 GAT
1 GAT
92833391 ATCGCCTTCT
Statistics
Matches: 187, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 75 0.40
45 76 0.41
46 7 0.04
47 20 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:92833420 original size:89 final size:88
Alignment explanation
Indices: 92833219--92833396 Score: 230
Period size: 89 Copynumber: 2.0 Consensus size: 88
92833209 AGATTTGGCA
* * * *
92833219 TCTCTGTATTAGACGGGGAGCAAATCGGAGATACAGATTTGGCATCTCTGTATTAGACGGGGAGC
1 TCTCTGTATTAGACGGGAAACAGATCGAAGATACAGATTTGGCATCTCTGTATTAGACGGGGAGC
* * *
92833284 AGATTAAAAAAGCAGATTTGGCG
66 AGATCAAAAAAGCAGATTCGCCG
* * *
92833307 TCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAG
1 TCTCTGTATTAGACGGGAAACAGATCGAAGAT-ACAGATTTGGCATCTCTGTATTAGACGGGGAG
*
92833372 CAGATCAAAGATAGCAGATATCGCC
65 CAGATCAAA-AAAGCAGAT-TCGCC
92833397 TTCTTGAGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
88 30 0.38
89 39 0.49
90 8 0.10
91 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (88 bp):
TCTCTGTATTAGACGGGAAACAGATCGAAGATACAGATTTGGCATCTCTGTATTAGACGGGGAGC
AGATCAAAAAAGCAGATTCGCCG
Found at i:92833754 original size:17 final size:19
Alignment explanation
Indices: 92833732--92833774 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
92833722 ATGAAAATAT
92833732 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
92833749 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
92833768 AATCTTA
1 AATCTTA
92833775 GAAGATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:92833764 original size:19 final size:19
Alignment explanation
Indices: 92833740--92833776 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
92833730 ATAATCTTCA
92833740 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92833759 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92833777 AGATATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92833812 original size:21 final size:23
Alignment explanation
Indices: 92833768--92833812 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
92833758 TATGATATGC
*
92833768 AATCTTAGAAGATATCATTTTGT
1 AATCTTAGAAGATATCAATTTGT
*
92833791 AATCTTAG-AGAT-TTAATTTGT
1 AATCTTAGAAGATATCAATTTGT
92833812 A
1 A
92833813 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATCAATTTGT
Found at i:92834087 original size:17 final size:17
Alignment explanation
Indices: 92834065--92834098 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
92834055 TGTTTCCCAG
92834065 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
92834082 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
92834099 GTATCATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:92835756 original size:34 final size:35
Alignment explanation
Indices: 92835717--92835814 Score: 128
Period size: 34 Copynumber: 2.9 Consensus size: 35
92835707 TCTGATATGT
92835717 TATGACATTTTGATATGGTATATGTTTCTGA-AAA
1 TATGACATTTTGATATGGTATATGTTTCTGAGAAA
* * *
92835751 TATGACATTTTAATCTAGTATATGTTTCT-AGAAA
1 TATGACATTTTGATATGGTATATGTTTCTGAGAAA
* **
92835785 TATGACATTTTGATTTGACATATGTTTCTG
1 TATGACATTTTGATATGGTATATGTTTCTG
92835815 GTAATGTGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 1 0.02
34 53 0.98
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (35 bp):
TATGACATTTTGATATGGTATATGTTTCTGAGAAA
Found at i:92836624 original size:19 final size:19
Alignment explanation
Indices: 92836588--92836626 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
92836578 TGGCATTCTC
*
92836588 TCATATTTTTGGTACATCA
1 TCATATTTTTCGTACATCA
92836607 TCATATTTTTACGT-CATCA
1 TCATATTTTT-CGTACATCA
92836626 T
1 T
92836627 ATTATCGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (19 bp):
TCATATTTTTCGTACATCA
Found at i:92836758 original size:16 final size:17
Alignment explanation
Indices: 92836722--92836762 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
92836712 TTTTGTATTC
*
92836722 CCTCATATTTTTATGCAT
1 CCTCATATATTTA-GCAT
92836740 CCTCATATATTTA-CAT
1 CCTCATATATTTAGCAT
92836756 CCTCATA
1 CCTCATA
92836763 ACTTTTGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
18 12 0.55
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (17 bp):
CCTCATATATTTAGCAT
Found at i:92839449 original size:12 final size:12
Alignment explanation
Indices: 92839406--92839449 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
92839396 CATTAACCTG
92839406 AAAAATATTATAT
1 AAAAAT-TTATAT
*
92839419 AAATATATTTATAA
1 AAA-A-ATTTATAT
92839433 AAAAATTTATAT
1 AAAAATTTATAT
92839445 AAAAA
1 AAAAA
92839450 CTAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 12 0.44
13 4 0.15
14 9 0.33
15 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAATTTATAT
Found at i:92844617 original size:49 final size:49
Alignment explanation
Indices: 92844519--92844859 Score: 279
Period size: 49 Copynumber: 7.1 Consensus size: 49
92844509 ATATAGTGAT
* * ** *
92844519 TGAAAACCATCGTTATCAGG-TACCCGGGATGGTAGAATATGCAACTAG
1 TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
** *
92844567 TGAAAACCATCGTTGTCAGGCCACCTAGGATGAAAGAATATGTAAATAG
1 TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
** * * * * *
92844616 TGAAAATTATCGTTGTCGGGTCACTTGGGATGGTGGAATATGCAAATAG
1 TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
* * * * *
92844665 AGAAAATCATCATTGTCGGGCCA-ATAGGGATGGTAGAATATGCAAATAG
1 TGAAAACCATCGTTGTCAGGCCACCTA-GGATGGTAGAATATGCAAATAG
* * * * *
92844714 TG--AACTATCGTTGAC-GAGCTAACC-AGGATGGTAGAATACGTAAATAG
1 TGAAAACCATCGTTGTCAG-GC-CACCTAGGATGGTAGAATATGCAAATAG
* * * * *
92844761 TGAAAACCATCATTTTCGGGTCACCTAGGATGGTAGAATATACAAATAG
1 TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
* * * *
92844810 TGAAAACTATCATTGTCA----ACCTAGGATGGTAGACTATACAAATAG
1 TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
92844855 TGAAA
1 TGAAA
92844860 GTAATCATTG
Statistics
Matches: 237, Mismatches: 47, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
45 31 0.13
46 1 0.00
47 33 0.14
48 25 0.11
49 146 0.62
50 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (49 bp):
TGAAAACCATCGTTGTCAGGCCACCTAGGATGGTAGAATATGCAAATAG
Found at i:92844772 original size:96 final size:96
Alignment explanation
Indices: 92844545--92844813 Score: 299
Period size: 96 Copynumber: 2.8 Consensus size: 96
92844535 CAGGTACCCG
* * * ** *
92844545 GGATGGTAGAATATGCAACTAGTGAAAACCATCGTTGTCAGGCCACCTAGGATGAAAGAATATGT
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTAGGATGGTAGAATATGC
* * * * **
92844610 AAATAGTGAAAATTATCGTTGTCGGGTCACTTG
66 AAATAGTG--AACTATCGTTGACGGCTAACTCA
* * * *
92844643 GGATGGTGGAATATGCAAATAGAGAAAATCATCATTGTCGGGCCA-ATAGGGATGGTAGAATATG
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA-GGATGGTAGAATATG
92844707 CAAATAGTGAACTATCGTTGACGAGCTAAC-CA
65 CAAATAGTGAACTATCGTTGACG-GCTAACTCA
* * * * *
92844739 GGATGGTAGAATACGTAAATAGTGAAAACCATCATTTTCGGGTCACCTAGGATGGTAGAATATAC
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTAGGATGGTAGAATATGC
92844804 AAATAGTGAA
66 AAATAGTGAA
92844814 AACTATCATT
Statistics
Matches: 143, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
96 75 0.52
97 8 0.06
98 60 0.42
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (96 bp):
GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTAGGATGGTAGAATATGC
AAATAGTGAACTATCGTTGACGGCTAACTCA
Found at i:92844809 original size:145 final size:142
Alignment explanation
Indices: 92844544--92844858 Score: 350
Period size: 145 Copynumber: 2.2 Consensus size: 142
92844534 TCAGGTACCC
* * * *
92844544 GGGATGGTAGAATATGCAACTAGTGAAAACCATCGTTGTCAGGCCACCTAGGATGAAAGAATATG
1 GGGATGGTAGAATATGCAAATAGTG--AACCATCGTTGACAGGCAACCTAGGATGAAAGAATACG
** * * * * *
92844609 TAAATAGTGAAAATTATCGTTGTCGGGTCACTTGGGATGGTGGAATATGCAAATAGAGAAAA-TC
64 TAAATAGTGAAAACCATCATTGTCGGGTCACCTAGGATGGTAGAATATACAAATAGAGAAAACT-
**
92844673 ATCATTGTCGGGCCAATA
128 ATCATTGTC-AACC--TA
* **
92844691 GGGATGGTAGAATATGCAAATAGTGAACTATCGTTGAC-GAGCTAACC-AGGATGGTAGAATACG
1 GGGATGGTAGAATATGCAAATAGTGAACCATCGTTGACAG-GC-AACCTAGGATGAAAGAATACG
* *
92844754 TAAATAGTGAAAACCATCATTTTCGGGTCACCTAGGATGGTAGAATATACAAATAGTGAAAACTA
64 TAAATAGTGAAAACCATCATTGTCGGGTCACCTAGGATGGTAGAATATACAAATAGAGAAAACTA
92844819 TCATTGTCAACCTA
129 TCATTGTCAACCTA
* *
92844833 -GGATGGTAGACTATACAAATAGTGAA
1 GGGATGGTAGAATATGCAAATAGTGAA
92844859 AGTAATCATT
Statistics
Matches: 145, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
141 24 0.17
142 2 0.01
144 3 0.02
145 88 0.61
146 4 0.03
147 24 0.17
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (142 bp):
GGGATGGTAGAATATGCAAATAGTGAACCATCGTTGACAGGCAACCTAGGATGAAAGAATACGTA
AATAGTGAAAACCATCATTGTCGGGTCACCTAGGATGGTAGAATATACAAATAGAGAAAACTATC
ATTGTCAACCTA
Found at i:92846374 original size:27 final size:27
Alignment explanation
Indices: 92846344--92846413 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
92846334 ATAACTTCTT
* *
92846344 GAACTATGAAAGAATAACCTTTGTGGC
1 GAACTATAAAAGAATAACCTTCGTGGC
*
92846371 GAACTAAAAAAGAATAACCTTCGTGGC
1 GAACTATAAAAGAATAACCTTCGTGGC
* *
92846398 AAACTCTAAAAGAATA
1 GAACTATAAAAGAATA
92846414 GTTGTAACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (27 bp):
GAACTATAAAAGAATAACCTTCGTGGC
Found at i:92852334 original size:47 final size:47
Alignment explanation
Indices: 92852280--92852473 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
92852270 TTAGGATTTT
** * *
92852280 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
92852327 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
92852374 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
92852421 ATGTGGTGAATGTGAACGTGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
92852468 ATGTGA
1 ATGTGA
92852474 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:92852380 original size:22 final size:22
Alignment explanation
Indices: 92852309--92852380 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
92852299 GTATATATGA
92852309 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
92852331 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
92852356 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
92852378 GAT
1 GAT
92852381 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:92852429 original size:25 final size:25
Alignment explanation
Indices: 92852354--92852429 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
92852344 ATGCATATAT
92852354 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
92852379 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
92852401 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
92852426 GTGA
1 GTGA
92852430 ATGTGAACGT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:92852507 original size:48 final size:48
Alignment explanation
Indices: 92852444--92852579 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 48
92852434 GAACGTGCAT
92852444 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
92852492 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
92852542 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
92852580 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.41
49 4 0.05
50 41 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:92852594 original size:50 final size:50
Alignment explanation
Indices: 92852443--92852600 Score: 200
Period size: 50 Copynumber: 3.2 Consensus size: 50
92852433 TGAACGTGCA
92852443 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC-
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCG
*
92852492 -ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATAT--G
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGCG
* * * *
92852541 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCG
92852591 TATATTGTGG
1 TATA-TGTGG
92852601 CCGAACGACC
Statistics
Matches: 94, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.40
49 4 0.04
50 45 0.48
51 6 0.06
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCG
Found at i:92852778 original size:37 final size:37
Alignment explanation
Indices: 92852728--92852833 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
92852718 AAATATATTT
92852728 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
92852765 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
92852802 CGCGTAAGACCCGATAACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
92852834 TCGTTTGAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:92864590 original size:42 final size:42
Alignment explanation
Indices: 92864544--92864650 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
92864534 TATTGGTCTC
*
92864544 GGCACTAAGTGTGCGGGTGTAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
92864586 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
92864628 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
92864651 ATTGTACAGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.28, C:0.15, G:0.35, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:92864715 original size:27 final size:28
Alignment explanation
Indices: 92864658--92864727 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
92864648 AAAATTGTAC
**
92864658 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
92864686 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
92864713 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92864728 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:92871815 original size:42 final size:42
Alignment explanation
Indices: 92871768--92871874 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
92871758 TATTGGTCTC
92871768 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
92871810 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
92871852 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
92871875 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:92871939 original size:27 final size:28
Alignment explanation
Indices: 92871882--92871951 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
92871872 AAAATTGTAC
**
92871882 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
92871910 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
92871937 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92871952 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:92874835 original size:39 final size:41
Alignment explanation
Indices: 92874771--92874873 Score: 167
Period size: 42 Copynumber: 2.6 Consensus size: 41
92874761 GCTAGTCAAT
*
92874771 TTTAAACCCGCACAC-TAGTGCCAATCTTGT-CCG-GTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTACCGTGTCCA
92874809 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGT-ACCGTGTCCA
92874851 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
92874874 GAGACCAATA
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
38 14 0.23
39 15 0.25
41 3 0.05
42 28 0.47
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (41 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTACCGTGTCCA
Found at i:92880071 original size:42 final size:42
Alignment explanation
Indices: 92880024--92880130 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
92880014 TATTGGTCTC
92880024 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
92880066 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
92880108 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
92880131 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:92880195 original size:27 final size:28
Alignment explanation
Indices: 92880138--92880207 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
92880128 AAAATTGTAC
**
92880138 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
92880166 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
92880193 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
92880208 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Done.