Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 327 of 444
Found at i:94381572 original size:19 final size:19
Alignment explanation
Indices: 94381548--94381584 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
94381538 AGTTAATAAC
*
94381548 AAATTTGATTACGGTGGGA
1 AAATTTAATTACGGTGGGA
94381567 AAATTTAATTACGGTGGG
1 AAATTTAATTACGGTGGG
94381585 TGAATGTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.32
Consensus pattern (19 bp):
AAATTTAATTACGGTGGGA
Found at i:94383267 original size:22 final size:22
Alignment explanation
Indices: 94383240--94383284 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
94383230 TTACCATTAA
*
94383240 AAAAATTAAAAACCCTAACCCT
1 AAAAATTAAAAACCATAACCCT
94383262 AAAAATTAAAAACCATAACCCT
1 AAAAATTAAAAACCATAACCCT
94383284 A
1 A
94383285 GAAGAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (22 bp):
AAAAATTAAAAACCATAACCCT
Found at i:94384176 original size:10 final size:10
Alignment explanation
Indices: 94384161--94384207 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
94384151 ATGTTCCAAA
*
94384161 ATTTTAATAT
1 ATTTAAATAT
*
94384171 ATTTTAATAT
1 ATTTAAATAT
*
94384181 ATTAAAATAT
1 ATTTAAATAT
94384191 A-TTAAATAT
1 ATTTAAATAT
*
94384200 ATTAAAAT
1 ATTTAAAT
94384208 TTTAAAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTTAAATAT
Found at i:94384199 original size:9 final size:9
Alignment explanation
Indices: 94384166--94384205 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
94384156 CCAAAATTTT
*
94384166 AATATATTTT
1 AATATA-TTA
94384176 AATATATTAA
1 AATATATT-A
94384186 AATATATTA
1 AATATATTA
94384195 AATATATTA
1 AATATATTA
94384204 AA
1 AA
94384206 ATTTTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 14 0.50
10 14 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATATATTA
Found at i:94384200 original size:19 final size:20
Alignment explanation
Indices: 94384166--94384207 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
94384156 CCAAAATTTT
*
94384166 AATATATTTTAATATATTAA
1 AATATATTTAAATATATTAA
94384186 AATATA-TTAAATATATTAA
1 AATATATTTAAATATATTAA
94384205 AAT
1 AAT
94384208 TTTAAAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATATATTTAAATATATTAA
Found at i:94384262 original size:17 final size:17
Alignment explanation
Indices: 94384236--94384304 Score: 68
Period size: 17 Copynumber: 3.9 Consensus size: 17
94384226 CAACATTTTC
*
94384236 TTTAACATATTTAAAAT
1 TTTAATATATTTAAAAT
*
94384253 TTTAATATATTTAAATTT
1 TTTAATATATTTAAA-AT
* *
94384271 TTTAAGTTTTTTTAAAAT
1 TTTAA-TATATTTAAAAT
94384289 TTTAA-ATATATTAAAA
1 TTTAATATAT-TTAAAA
94384305 AATTTCTCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
16 2 0.05
17 20 0.48
18 12 0.29
19 8 0.19
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTTAATATATTTAAAAT
Found at i:94384449 original size:10 final size:10
Alignment explanation
Indices: 94384434--94384460 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
94384424 TAATATATTT
94384434 AAATTTTTTA
1 AAATTTTTTA
94384444 AAATTTTTTA
1 AAATTTTTTA
94384454 AAATTTT
1 AAATTTT
94384461 AGATATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AAATTTTTTA
Found at i:94384554 original size:18 final size:17
Alignment explanation
Indices: 94384508--94384546 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
94384498 AAAATATATA
* *
94384508 TTAAGTATATTAAAATT
1 TTAAATATATTAAACTT
94384525 TTAAATATATTAAACTT
1 TTAAATATATTAAACTT
94384542 TTAAA
1 TTAAA
94384547 ATTAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAACTT
Found at i:94384587 original size:19 final size:21
Alignment explanation
Indices: 94384548--94384587 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
94384538 ACTTTTAAAA
94384548 TTAATTATACTTAACATTTTT
1 TTAATTATACTTAACATTTTT
*
94384569 TTAA-TATATTTAA-ATTTTT
1 TTAATTATACTTAACATTTTT
94384588 AGAAAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTATACTTAACATTTTT
Found at i:94385675 original size:11 final size:11
Alignment explanation
Indices: 94385659--94385684 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
94385649 CAGTTAATCT
94385659 GTTAGCTGTTA
1 GTTAGCTGTTA
94385670 GTTAGCTGTTA
1 GTTAGCTGTTA
94385681 GTTA
1 GTTA
94385685 ATCTGTTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.27, T:0.46
Consensus pattern (11 bp):
GTTAGCTGTTA
Found at i:94387834 original size:14 final size:14
Alignment explanation
Indices: 94387803--94387865 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
94387793 TATTTCCCAC
*
94387803 AAAAAAAAAGT-GA
1 AAAAAAAAAGTACA
*
94387816 TAAAAAAAAGTACA
1 AAAAAAAAAGTACA
94387830 AAAAATAAAA-TACGA
1 AAAAA-AAAAGTAC-A
*
94387845 AAAAAATAAAATA-A
1 AAAAAA-AAAGTACA
94387859 AAAAAAA
1 AAAAAAA
94387866 TTCTGTGGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
13 11 0.26
14 16 0.38
15 13 0.31
16 2 0.05
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.11
Consensus pattern (14 bp):
AAAAAAAAAGTACA
Found at i:94387864 original size:15 final size:16
Alignment explanation
Indices: 94387829--94387866 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
94387819 AAAAAAGTAC
*
94387829 AAAAAATAAAATACGA
1 AAAAAATAAAATACAA
94387845 AAAAAATAAAATA-AA
1 AAAAAATAAAATACAA
94387860 AAAAAAT
1 AAAAAAT
94387867 TCTGTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAATAAAATACAA
Found at i:94395259 original size:15 final size:15
Alignment explanation
Indices: 94395239--94395296 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
94395229 AAAAATATTT
94395239 ATATTTTTTATTTTA
1 ATATTTTTTATTTTA
** *
94395254 ATATTTAATAATTTA
1 ATATTTTTTATTTTA
94395269 ATAATTTTTTATTTATTA
1 AT-ATTTTTTA-TT-TTA
94395287 A-ATTTTTTAT
1 ATATTTTTTAT
94395297 ATAATCATCT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 15 0.44
16 14 0.41
17 1 0.03
18 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATTTTTTATTTTA
Found at i:94395261 original size:31 final size:31
Alignment explanation
Indices: 94395218--94395292 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
94395208 CTTATATTAT
*
94395218 TTTTAAATTTTAAAAATATTTAT-ATTTTTTA
1 TTTTAAATTTTAAAAAT-TTAATAATTTTTTA
*
94395249 TTTT-AATATTTAATAATTTAATAATTTTTTA
1 TTTTAAAT-TTTAAAAATTTAATAATTTTTTA
94395280 TTTATTAAATTTT
1 -TT-TTAAATTTT
94395293 TTATATAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
30 7 0.19
31 20 0.54
32 2 0.05
33 5 0.14
34 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (31 bp):
TTTTAAATTTTAAAAATTTAATAATTTTTTA
Found at i:94396710 original size:15 final size:14
Alignment explanation
Indices: 94396665--94396710 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 14
94396655 TTTACGTTTC
94396665 AAATTAATAATTTA
1 AAATTAATAATTTA
94396679 AAA--AATAATTTA
1 AAATTAATAATTTA
*
94396691 TAATTAATAAATTTA
1 AAATTAAT-AATTTA
94396706 AAATT
1 AAATT
94396711 TTGAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.41
14 6 0.22
15 10 0.37
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTAATAATTTA
Found at i:94397454 original size:17 final size:17
Alignment explanation
Indices: 94397421--94397494 Score: 53
Period size: 17 Copynumber: 4.2 Consensus size: 17
94397411 ACATAATAAT
*
94397421 TTTAT-TTATATATATTA
1 TTTATATTAT-TAAATTA
94397438 TTTATATTATTAAATTAAA
1 TTTATATTATTAAATT--A
* **
94397457 TTTCAAATT-TTTTATTA
1 TTT-ATATTATTAAATTA
*
94397474 TTTATATTATTGAATTA
1 TTTATATTATTAAATTA
94397491 TTTA
1 TTTA
94397495 ATCATATGGA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
16 4 0.09
17 24 0.53
18 4 0.09
19 9 0.20
20 4 0.09
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (17 bp):
TTTATATTATTAAATTA
Found at i:94401765 original size:10 final size:10
Alignment explanation
Indices: 94401750--94401785 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
94401740 ACCCATAATT
94401750 ATTTTTAAAA
1 ATTTTTAAAA
94401760 ATTTTTAAAA
1 ATTTTTAAAA
94401770 ATTTTTAAAA
1 ATTTTTAAAA
94401780 ATTTTT
1 ATTTTT
94401786 CCAAGTCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTTAAAA
Found at i:94402297 original size:49 final size:49
Alignment explanation
Indices: 94402231--94402475 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
94402221 TAGCCAAAGC
* * *
94402231 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * *
94402280 TATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * *
94402330 CATCTGATACACGTAATAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * * *
94402381 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
*
94402430 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
94402476 TCACAATAGA
Statistics
Matches: 167, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 84 0.50
50 45 0.27
51 38 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:94410735 original size:17 final size:17
Alignment explanation
Indices: 94410713--94410745 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
94410703 AAAACCCTAA
*
94410713 TTTTTCCTT-TTTCTTT
1 TTTTTTCTTCTTTCTTT
94410729 TTTTTTCTTCTTTCTTT
1 TTTTTTCTTCTTTCTTT
94410746 CCCCTAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTCTTCTTTCTTT
Found at i:94410963 original size:12 final size:12
Alignment explanation
Indices: 94410946--94410970 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94410936 TAGATAAAAT
94410946 ATAATAATAACA
1 ATAATAATAACA
94410958 ATAATAATAACA
1 ATAATAATAACA
94410970 A
1 A
94410971 GTAAATATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAATAACA
Found at i:94413558 original size:468 final size:468
Alignment explanation
Indices: 94412681--94413620 Score: 1567
Period size: 468 Copynumber: 2.0 Consensus size: 468
94412671 AGGGGATATA
*
94412681 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAATCCAAA
1 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
*
94412746 ACTTTTGAAGGGAAATTAAAGGGAAATCTGCAGTCTTGATGGTGACTCTAGCTTCTGAGATGGAT
66 ACTTTTGAAGGGAAATTAAAGGGAAATCTGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
* * * *
94412811 CAATTGGCTTCCCTTGAGCAGTTCCATGCCTCCTTCTATCTGTGCCTCTTTTCTTCTTCCTTTAG
131 CAATTGGCTTCCCTTGAACAGTTCCATACCTCCTTCTATCTGTGCCCCTTTTCTTCTTCCTTTAA
*
94412876 GGCGTATTTATAGGCTTTAGAATGCCTAAAAACCTTCAAAATTAGCCTTTTCCGAATTGGACTCA
196 GGCGTATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGGACTCA
* * *
94412941 ACTTGGGCTCGATAGGGACATGCCCGTGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
261 ACTTGGGATCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
* *
94413006 GGCACGGGCGTGTGGTCTACCCGTGTGAATCGTGCTTCGATTCTACCAAATTGACACGACCGTGT
326 GGCACGGGCGTGTGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTGT
* * * * *
94413071 GGTCTGCCTGTGTGAGGAAGTTTAGGCCATGTTGATTTCGTACTTTGGCTCATTTTCTCAGTTTT
391 GGTCTACCTATGAGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAGTTTT
94413136 TAGTTCATTTCTC
456 TAGTTCATTTCTC
94413149 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
1 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
* * * * *
94413214 ACTTTTGAAGGGAAATTGAGGGGAGATCTTCAGTCTTGATGGTGACTCCGGCTTCTGAGATGGAT
66 ACTTTTGAAGGGAAATTAAAGGGAAATCTGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
* * *
94413279 CAATTGGCTTCCCTTGAATAGTTCCCTACCTCCTTCTATCTGTGCCCCTTTT-TCTCTTCTTTTA
131 CAATTGGCTTCCCTTGAACAGTTCCATACCTCCTTCTATCTGTGCCCCTTTTCT-TCTTCCTTTA
*
94413343 AGGCTTATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGGACTC
195 AGGCGTATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGGACTC
*
94413408 AACTTGGGATCGATAGGGACACGCCCGGGTGCGATTACTTCAGGCTGTGGTCAAGCCTGTTAAAT
260 AACTTGGGATCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAAT
* *
94413473 AGGCATGGGCGTGTGGTCTATCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTG
325 AGGCACGGGCGTGTGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTG
* *
94413538 TGGTCTACCTATGAGAGGAAGTTCAGGCTATGTTGATTTCGTAATTTGTCTCATTTTCTCAGTTT
390 TGGTCTACCTATGAGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAGTTT
**
94413603 TTAGTTTGTTTCTC
455 TTAGTTCATTTCTC
94413617 GTTC
1 GTTC
94413621 CTTTCGCTCT
Statistics
Matches: 438, Mismatches: 33, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
467 1 0.00
468 437 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (468 bp):
GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
ACTTTTGAAGGGAAATTAAAGGGAAATCTGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
CAATTGGCTTCCCTTGAACAGTTCCATACCTCCTTCTATCTGTGCCCCTTTTCTTCTTCCTTTAA
GGCGTATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGGACTCA
ACTTGGGATCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
GGCACGGGCGTGTGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTGT
GGTCTACCTATGAGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAGTTTT
TAGTTCATTTCTC
Found at i:94417596 original size:55 final size:55
Alignment explanation
Indices: 94417507--94417620 Score: 183
Period size: 55 Copynumber: 2.1 Consensus size: 55
94417497 CTTCTCCCAA
* * * *
94417507 GCCCGTGTTAATTTAACAGGTTTGGCCACGGGTTAAAGGTACGTGCGTGTCGCAT
1 GCCCATGTTAATTTAACAGGTTTGGCCACGGGTTAAAGGCACGCGCGTGTCGCAC
*
94417562 GCCCATGTTAATTTGACAGGTTTGGCCACGGGTTAAAGGCACGCGCGTGTCGCAC
1 GCCCATGTTAATTTAACAGGTTTGGCCACGGGTTAAAGGCACGCGCGTGTCGCAC
94417617 GCCC
1 GCCC
94417621 GTGCTGTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (55 bp):
GCCCATGTTAATTTAACAGGTTTGGCCACGGGTTAAAGGCACGCGCGTGTCGCAC
Found at i:94423656 original size:14 final size:14
Alignment explanation
Indices: 94423637--94423663 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94423627 CGAAATTCAA
94423637 AGAAGAAGAAGAAT
1 AGAAGAAGAAGAAT
94423651 AGAAGAAGAAGAA
1 AGAAGAAGAAGAA
94423664 CTGTTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (14 bp):
AGAAGAAGAAGAAT
Found at i:94426281 original size:75 final size:75
Alignment explanation
Indices: 94426158--94426304 Score: 267
Period size: 75 Copynumber: 2.0 Consensus size: 75
94426148 GCATCGAACG
*
94426158 AGCGATCGAGCGCTTTACGATTTGGTATGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
94426223 CCTACTAGAA
66 CCTACTAGAA
* *
94426233 AGCGATCGAGCGTTTTACGATTTGGTACGCGCGATTTTTCCAGTTTTAATTTAACTCTTGAAAAT
1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
94426298 CCTACTA
66 CCTACTA
94426305 TAAATTAAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (75 bp):
AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
CCTACTAGAA
Found at i:94428035 original size:5 final size:6
Alignment explanation
Indices: 94428019--94428049 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
94428009 CGGTAAACTT
*
94428019 GAAAAA GAAAAA GAAAAA GAAAAA GTAAAA G
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA G
94428050 CATAAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:94429066 original size:22 final size:22
Alignment explanation
Indices: 94429041--94429085 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
94429031 AACTTGTCCT
* *
94429041 CATCGCGACATTGGGAGCTTGA
1 CATCACGACATTGAGAGCTTGA
**
94429063 CATCACGATGTTGAGAGCTTGA
1 CATCACGACATTGAGAGCTTGA
94429085 C
1 C
94429086 GTTACGATGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (22 bp):
CATCACGACATTGAGAGCTTGA
Found at i:94429834 original size:383 final size:383
Alignment explanation
Indices: 94429127--94429895 Score: 1432
Period size: 383 Copynumber: 2.0 Consensus size: 383
94429117 CCAAATAGTA
*
94429127 CCATTTTATAACACCTAAACAAACAAATCCAATATCCCAAATTAACCTGTTGAAACCCTTTTTTT
1 CCATTTTATAACACCTAAACAAACAAATCCAATATCCCAAATCAACCTGTTGAAACCCTTTTTTT
*
94429192 CGAAAGGTTGACTTTTATTTAAAACGAAAAATGAGAGTCACCACCAACCATTTTTTATATGAGGT
66 CGAAAGGTCGACTTTTATTTAAAACGAAAAATGAGAGTCACCACCAACCATTTTTTATATGAGGT
*
94429257 GCGATCGAATCATCTCGTAATTTGATAGTTTTAATAAACCGTTTTGGCATCTGAAGTTAAAATCC
131 GCGATCGAATCACCTCGTAATTTGATAGTTTTAATAAACCGTTTTGGCATCTGAAGTTAAAATCC
94429322 AAAATGACGCCATTTTGCAACTCCTATTTAAGTCAAATTTTTTTTTCAAAAATTTCATTTCAGCT
196 AAAATGACGCCATTTTGCAACTCCTATTTAAGTCAAATTTTTTTTTCAAAAATTTCATTTCAGCT
94429387 TTCATTTAAAAAAAAAACCAAACTTTCTTCTTCTTTTTCTCTCTCAAAACCATCCCAGGCTGGTC
261 TTCATTTAAAAAAAAAACCAAACTTTCTTCTTCTTTTTCTCTCTCAAAACCATCCCAGGCTGGTC
* * *
94429452 ATAGCTCCGGCGAACCGCCATCGCACTAGTCACAGGTCACCGGCGACGGTGCCACCGT
326 AAAGCTCCGACGAACCGCCATCGCACCAGTCACAGGTCACCGGCGACGGTGCCACCGT
*
94429510 CCATTTTATAACACCTAAACAAACAAATCCAATATCCTAAATCAACCTGTTGAAACCCTTTTTTT
1 CCATTTTATAACACCTAAACAAACAAATCCAATATCCCAAATCAACCTGTTGAAACCCTTTTTTT
94429575 CGAAAGGTCGACTTTTATTTAAAACGAAAAATGAGAGTCACCACCAACCATTTTTTATATGAGGT
66 CGAAAGGTCGACTTTTATTTAAAACGAAAAATGAGAGTCACCACCAACCATTTTTTATATGAGGT
*
94429640 GCGATCGAATCACCTCGTAATTTGATAGTTTTAATAAACTGTTTTGGCATCTGAAGTTAAAATCC
131 GCGATCGAATCACCTCGTAATTTGATAGTTTTAATAAACCGTTTTGGCATCTGAAGTTAAAATCC
*
94429705 AAAATGACGCCATTTTGCAACTCCTATTTAAGT-TAATTTTTTTTTCAAAAATTTCATTTCAGCT
196 AAAATGACGCCATTTTGCAACTCCTATTTAAGTCAAATTTTTTTTTCAAAAATTTCATTTCAGCT
*
94429769 TTCATTTAAAAAAAAAAACCAAACTTTCTTCTTCTTTTTCTCTCTCAAAACCATCTCAGGCTGGT
261 TTCATTT-AAAAAAAAAACCAAACTTTCTTCTTCTTTTTCTCTCTCAAAACCATCCCAGGCTGGT
94429834 CAAAGCTCCGACGAACCGCCATCGCACCAGTCACAGGTCACCGGCGACGGTGCCACCGT
325 CAAAGCTCCGACGAACCGCCATCGCACCAGTCACAGGTCACCGGCGACGGTGCCACCGT
94429893 CCA
1 CCA
94429896 CAGTGGCCGA
Statistics
Matches: 375, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
382 37 0.10
383 338 0.90
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (383 bp):
CCATTTTATAACACCTAAACAAACAAATCCAATATCCCAAATCAACCTGTTGAAACCCTTTTTTT
CGAAAGGTCGACTTTTATTTAAAACGAAAAATGAGAGTCACCACCAACCATTTTTTATATGAGGT
GCGATCGAATCACCTCGTAATTTGATAGTTTTAATAAACCGTTTTGGCATCTGAAGTTAAAATCC
AAAATGACGCCATTTTGCAACTCCTATTTAAGTCAAATTTTTTTTTCAAAAATTTCATTTCAGCT
TTCATTTAAAAAAAAAACCAAACTTTCTTCTTCTTTTTCTCTCTCAAAACCATCCCAGGCTGGTC
AAAGCTCCGACGAACCGCCATCGCACCAGTCACAGGTCACCGGCGACGGTGCCACCGT
Found at i:94430871 original size:44 final size:44
Alignment explanation
Indices: 94430824--94431589 Score: 432
Period size: 44 Copynumber: 16.9 Consensus size: 44
94430814 GGAATTGTCG
* *
94430824 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTAG
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * * * *
94430868 CTTCAATCTACTCCATTGCAACTTTAGGGAAATAAGATTCGCAT
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * * * *
94430912 CTTCAATCTGCTCCACTACAAC-TCTAGGGAGATAAAATTTGTAA
1 CTTCAATCTACTCCACTGCAACTTC-AAGGAGATAAGATTAGTAT
* * * * * *
94430956 CTTGTAGCATTAATCCATTCCACTGCAACTTCAGGGAAATAAGATTCGCAT
1 C-T-T--C---AATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * * *
94431007 CTTCAATCTGCTTCACTGCAACTTCAAGGGGATAAGATTTGCAT
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
** * * * *
94431051 CTTCAATCTACTCCACTGCATGTTCAGGGAGATAGGATTTGTAA
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * * * *
94431095 CTTGTAGCATTAATCCATTCCACTGCAACTTCAGGGAAATAAGATTCGCAT
1 C-T-T--C---AATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * *
94431146 ATTCAATCTGCTCCACTGCAACTT-TAGTGAGATAAGATTCA-CAT
1 CTTCAATCTACTCCACTGCAACTTCAAG-GAGATAAGATT-AGTAT
* * *
94431190 CTTCAATCTGCTCCACTGCATCTTCAAGGAGATAAGATTTGTAACT
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGT-A-T
* * * * * *
94431236 TTTAGCATTAATCCATTCCACTGCAACTTCAAGGAAATAAGATTCGCAT
1 CTT--C---AATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
* * * * **
94431285 ATTCAATCTGCTCCACTACAACTTC-AGAGAGTTAAGATTTTCTAT
1 CTTCAATCTACTCCACTGCAACTTCAAG-GAGATAAGA-TTAGTAT
* * ** * *
94431330 CTTTAATCTATTCCACTAAAACTTCAAGTAGATAAGACTT-GTAA
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGA-TTAGTAT
* * * * * *
94431374 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGGTTTA-TAG
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAA-GATTAGTAT
* * * * * *
94431418 CTTTAATCTGCTCTACTGCAATTTCAAAGAGATAAGATTTGCTAT
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAG-TAT
* * *
94431463 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCA-TAG
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATT-AGTAT
* * **
94431507 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTAGTGG
1 CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
** * *
94431551 CTTCAATCTGTTCTACTGCAATTTC-AGAGAGATAAGATT
1 CTTCAATCTACTCCACTGCAACTTCAAG-GAGATAAGATT
94431590 CGCCATAATG
Statistics
Matches: 556, Mismatches: 129, Indels: 74
0.73 0.17 0.10
Matches are distributed among these distances:
43 9 0.02
44 358 0.64
45 75 0.13
46 7 0.01
47 3 0.01
48 3 0.01
49 5 0.01
50 3 0.01
51 91 0.16
52 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTAGTAT
Found at i:94431004 original size:95 final size:93
Alignment explanation
Indices: 94430824--94431589 Score: 410
Period size: 95 Copynumber: 8.4 Consensus size: 93
94430814 GGAATTGTCG
* * * * *
94430824 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTAGCT-T-C---AATCTACTCCAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
*
94430884 TGCAACTTTAGGGAAATAAGATTCGCAT
66 TGCAACTTCAGGGAAATAAGATTCGCAT
* * *
94430912 CTTCAATCTGCTCCACTACAAC-TCTAGGGAGATAAAATTTGTAACTTGTAGCATTAATCCATTC
1 CTTCAATCTGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTAAC-TGTA-CATTAATCCACTC
94430976 CACTGCAACTTCAGGGAAATAAGATTCGCAT
63 CACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * *
94431007 CTTCAATCTGCTTCACTGCAACTTCAAGGG-GATAAGATTTGCATCT-T-C---AATCTACTCCA
1 CTTCAATCTGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCA
** * * * * *
94431066 CTGCATGTTCAGGGAGATAGGATTTGTAA
65 CTGCAACTTCAGGGAAATAAGATTCGCAT
*** * * *
94431095 CTTGTAGCATTAATCCATTCCACTGCAACTTCAGGGAAATAAGA--T-T--C-GCATATTCAATC
1 C-T-T--C---AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATT-AATC
** * * * *
94431154 TGCTCCACTGCAACTTTAGTGAGATAAGATTCACAT
58 CACTCCACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * *
94431190 CTTCAATCTGCTCCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAGCATTAATCCATTCC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC-TGTA-CATTAATCCACTCC
*
94431255 ACTGCAACTTCAAGGAAATAAGATTCGCAT
64 ACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * * * * * *
94431285 ATTCAATCTGCTCCACTACAACTTCAGAGAGTTAAGATTT-T--CTAT-CTTTAATCTATTCCAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
** * * * * *
94431346 TAAAACTTCAAGTAGATAAGACTT-GTAA
66 TGCAACTTCAGGGAAATAAGA-TTCGCAT
* * * * * * * ** *
94431374 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGGTTTAT-A--G--CTTTAATCTGCTCTAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
* ** * *
94431434 TGCAATTTCAAAGAGATAAGATTTGCTAT
66 TGCAACTTCAGGGAAATAAGATTCGC-AT
* * ** * *
94431463 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCATAGCT-T-C---AATCTACTCCAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
* * * ***
94431523 TACAACTTCAGGGAGATAAGATTAGTGG
66 TGCAACTTCAGGGAAATAAGATTCGCAT
* * * *
94431551 CTTCAATCTGTTCTACTGCAATTTCAGAGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
94431590 CGCCATAATG
Statistics
Matches: 523, Mismatches: 115, Indels: 80
0.73 0.16 0.11
Matches are distributed among these distances:
87 4 0.01
88 159 0.30
89 135 0.26
90 7 0.01
91 5 0.01
92 4 0.01
93 4 0.01
94 7 0.01
95 189 0.36
96 9 0.02
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (93 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
TGCAACTTCAGGGAAATAAGATTCGCAT
Found at i:94431091 original size:139 final size:139
Alignment explanation
Indices: 94430835--94431501 Score: 671
Period size: 139 Copynumber: 4.8 Consensus size: 139
94430825 TTCAATCTGC
* * * ** * * * *
94430835 TCCACTGCAACTTCAAGGAGATAAGATTAGTAGCTTCAATCTACTCCATTGCAACTTTAGGGAAA
1 TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGAGAGA
* * * *
94430900 TAAGATTCGCATCTTCAATCTGCTCCACTACA-ACTCTAGGGAGATAAAATTTGTAACTTGTAGC
66 TAAGATTCGCATCTTCAATCTACTCCACTGCATATTC-AGGGAGATAAGATTTGTAACTTGTAGC
94430964 ATTAATCCAT
130 ATTAATCCAT
* * * * *
94430974 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTTCACTGCAACTTCA-AGGGG
1 TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGA-GAG
* * *
94431038 ATAAGATTTGCATCTTCAATCTACTCCACTGCATGTTCAGGGAGATAGGATTTGTAACTTGTAGC
65 ATAAGATTCGCATCTTCAATCTACTCCACTGCATATTCAGGGAGATAAGATTTGTAACTTGTAGC
94431103 ATTAATCCAT
130 ATTAATCCAT
* *
94431113 TCCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGTGAGA
1 TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGAGAGA
* * * * *
94431178 TAAGATTCACATCTTCAATCTGCTCCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAGCA
66 TAAGATTCGCATCTTCAATCTACTCCACTGCATATTCAGGGAGATAAGATTTGTAACTTGTAGCA
94431243 TTAATCCAT
131 TTAATCCAT
* * *
94431252 TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTACAACTTCAGAGAGT
1 TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGAGAGA
** * * * * * * *
94431317 TAAGATTTTCTATCTTTAATCTATTCCACT-AAAACTTCAAGTAGATAAGACTTGTAAC-T-T--
66 TAAGATTCGC-ATCTTCAATCTACTCCACTGCATA-TTCAGGGAGATAAGATTTGTAACTTGTAG
*
94431377 C---AA-CCTAC
129 CATTAATCC-AT
* * * * * * * * *
94431385 TCCACTACAAATTCAGGGAGATAAGGTT--TATAGCTTTAATCTGCTCTACTGCAA-TTTCAAAG
1 TCCACTGCAACTTCAAGGAAATAAGATTCGCATA--TTCAATCTGCTCCACTGCAACTTT-AGAG
* *
94431447 AGATAAGATTTGCTATCTTTAATCTACTCCACTGCA-ACTTCAGGGAGATAAGATT
63 AGATAAGATTCGC-ATCTTCAATCTACTCCACTGCATA-TTCAGGGAGATAAGATT
94431502 CATAGCTTCA
Statistics
Matches: 453, Mismatches: 65, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
131 3 0.01
132 4 0.01
133 92 0.20
134 1 0.00
136 1 0.00
138 1 0.00
139 312 0.69
140 39 0.09
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (139 bp):
TCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTCCACTGCAACTTTAGAGAGA
TAAGATTCGCATCTTCAATCTACTCCACTGCATATTCAGGGAGATAAGATTTGTAACTTGTAGCA
TTAATCCAT
Found at i:94431379 original size:89 final size:89
Alignment explanation
Indices: 94431150--94431589 Score: 302
Period size: 89 Copynumber: 4.9 Consensus size: 89
94431140 TCGCATATTC
* * * * * * * *
94431150 AATCTGCTCCACTGCAACTT-TAGTGAGATAAGATTCA-CATCTTCAATCTGCTCCACTGCATCT
1 AATCTACTCCACTACAACTTCAAG-GAGATAAGATT-AGTAACTTCAATCTACTCCACTACAACT
*
94431213 TCA-AGGAGATAAGATTTGTAACTTTTAGCATT
64 TCAGA-GAGATAAGATTT-T--C---TAGCTTT
* * * * * * *
94431245 AATCCATTCCACTGCAACTTCAAGGAAATAAGATTCGCATA-TTCAATCTGCTCCACTACAACTT
1 AATCTACTCCACTACAACTTCAAGGAGATAAGATTAGTA-ACTTCAATCTACTCCACTACAACTT
* *
94431309 CAGAGAGTTAAGATTTTCTATCTTT
65 CAGAGAGATAAGATTTTCTAGCTTT
* * * * *
94431334 AATCTATTCCACTAAAACTTCAAGTAGATAAGACTT-GTAACTTCAACCTACTCCACTACAAATT
1 AATCTACTCCACTACAACTTCAAGGAGATAAGA-TTAGTAACTTCAATCTACTCCACTACAACTT
* * *
94431398 CAGGGAGATAAG-GTTTATAGCTTT
65 CAGAGAGATAAGATTTTCTAGCTTT
* * * * * * * * *
94431422 AATCTGCTCTACTGCAATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTT
1 AATCTACTCCACTACAACTTCAAGGAGATAAGATTAG-TAACTTCAATCTACTCCACTACAACTT
* *
94431487 CAGGGAGATAAGA--TTCATAGCTTC
65 CAGAGAGATAAGATTTTC-TAGCTTT
* ** ** * * *
94431511 AATCTACTCCACTACAACTTCAGGGAGATAAGATTAGTGGCTTCAATCTGTTCTACTGCAATTTC
1 AATCTACTCCACTACAACTTCAAGGAGATAAGATTAGTAACTTCAATCTACTCCACTACAACTTC
94431576 AGAGAGATAAGATT
66 AGAGAGATAAGATT
94431590 CGCCATAATG
Statistics
Matches: 277, Mismatches: 56, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
87 2 0.01
88 70 0.25
89 135 0.49
90 2 0.01
92 1 0.00
94 1 0.00
95 63 0.23
96 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (89 bp):
AATCTACTCCACTACAACTTCAAGGAGATAAGATTAGTAACTTCAATCTACTCCACTACAACTTC
AGAGAGATAAGATTTTCTAGCTTT
Found at i:94431470 original size:133 final size:133
Alignment explanation
Indices: 94430824--94431589 Score: 415
Period size: 139 Copynumber: 5.6 Consensus size: 133
94430814 GGAATTGTCG
* * * * * * * *
94430824 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTAGCTTCAATCTACTCCATTGCAA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
* * * * * * * *
94430889 CTTT-AGGGAAATAAGATTCGC-ATCTTCAATCTGCTCCACTACAAC-TCTAGGGAGATAAAATT
66 -TTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTC-AAGGAGATAAGATT
**
94430951 TGTAA
129 CATAA
* * * * * * *
94430956 CTTGTAGCATTAATCC-ATTCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCT-
1 C-T-T--C---AA-CCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTC
* * * ** ** *
94431019 TCACTGCAACTTCA-AGGGGATAAGATTTGC-ATCTTCAATCTACTCCACTGCATGTTCAGGGAG
58 T-ACTGCAATTTCAGA-GAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAG
* **
94431082 ATAGGATTTGTAA
121 ATAAGATTCATAA
* * * * * * **
94431095 CTTGTAGCATTAATCC-ATTCCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCTC
1 C-T-T--C---AA-CCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTC
* * ** * * ** *
94431159 CACTGCAACTTT-AGTGAGATAAGATTCAC-ATCTTCAATCTGCTCCACTGCATCTTCAAGGAGA
58 TACTGCAA-TTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGA
**
94431222 TAAGATTTGTAA
122 TAAGATTCATAA
* * * * * * * **
94431234 CTTTTAGCATTAATCC-ATTCCACTGCAACTTCAAGGAAATAAGATTCGCATATTCAATCTGCTC
1 C--TT--C---AA-CCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTC
* * * * * * *
94431298 CACTACAACTTCAGAGAGTTAAGATTTTCTATCTTTAATCTATTCCACTAAAACTTCAAGTAGAT
58 TACTGCAATTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGAT
*
94431363 AAGACTT-GTAA
123 AAGA-TTCATAA
* *
94431374 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGGTTTA-TAGCTTTAATCTGCTCTACTGCA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAA-GATTAGTAGCTTCAATCTGCTCTACTGCA
* ** *
94431438 ATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTC
65 ATTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGATAAGATTC
*
94431503 ATAG
130 ATAA
* * * *
94431507 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTAGTGGCTTCAATCTGTTCTACTGCAA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
94431572 TTTCAGAGAGATAAGATT
66 TTTCAGAGAGATAAGATT
94431590 CGCCATAATG
Statistics
Matches: 533, Mismatches: 78, Indels: 45
0.81 0.12 0.07
Matches are distributed among these distances:
132 9 0.02
133 167 0.31
134 4 0.01
136 2 0.00
138 6 0.01
139 299 0.56
140 44 0.08
141 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (133 bp):
CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
TTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGATAAGATTCA
TAA
Found at i:94437175 original size:40 final size:41
Alignment explanation
Indices: 94437128--94437246 Score: 125
Period size: 40 Copynumber: 2.9 Consensus size: 41
94437118 TGTATGTTTC
* *
94437128 GAGATAGCTTCGGCTATATATTGCACTTAGTGTGC-GAATT
1 GAGATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
* * *
94437168 G-GAATAGCTTAGGCTATATGTGGCACTAAGTGTGCAGTATT
1 GAG-ATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
* *
94437209 GAGATAGCTTCGGTTTAATGTGATGGCACTAAGTGTGC
1 GAGATAGCTTCGG-CT-ATAT-ATGGCACTAAGTGTGC
94437247 GATATCGTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.02
40 29 0.45
41 14 0.22
42 2 0.03
43 3 0.05
44 15 0.23
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (41 bp):
GAGATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
Found at i:94443743 original size:22 final size:22
Alignment explanation
Indices: 94443718--94443762 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
94443708 TCACCACGAC
*
94443718 GTTGAGAGCTTGACATCATAAT
1 GTTGAGAGCTTGACATCACAAT
*
94443740 GTTGAGAGCTTGACGTCACAAT
1 GTTGAGAGCTTGACATCACAAT
94443762 G
1 G
94443763 CCACTGTCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (22 bp):
GTTGAGAGCTTGACATCACAAT
Found at i:94444602 original size:18 final size:17
Alignment explanation
Indices: 94444573--94444610 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
94444563 CTAATAAAGC
94444573 ATAAAAATATGATGATA
1 ATAAAAATATGATGATA
94444590 ATAAAAATCATGATGATA
1 ATAAAAAT-ATGATGATA
94444608 ATA
1 ATA
94444611 TGTATAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (17 bp):
ATAAAAATATGATGATA
Found at i:94453194 original size:14 final size:14
Alignment explanation
Indices: 94453167--94453201 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
94453157 AATGTTATGT
*
94453167 ATATAAATTTTAAA
1 ATATAAATTATAAA
*
94453181 ATATATATTATAAA
1 ATATAAATTATAAA
94453195 ATATAAA
1 ATATAAA
94453202 CAATTAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATAAATTATAAA
Found at i:94459431 original size:93 final size:93
Alignment explanation
Indices: 94459319--94459490 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94459309 GCCCATAAGT
* *
94459319 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94459384 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94459412 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94459477 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94459491 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94459486 original size:46 final size:46
Alignment explanation
Indices: 94459311--94459486 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
94459301 TGTAACCCGC
* * *
94459311 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
94459357 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
94459407 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
94459450 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94459487 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:94461908 original size:29 final size:29
Alignment explanation
Indices: 94461869--94461956 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
94461859 CAAAGATAAC
*
94461869 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
94461898 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
94461927 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
94461957 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:94461927 original size:15 final size:15
Alignment explanation
Indices: 94461869--94461947 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
94461859 CAAAGATAAC
*
94461869 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94461883 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
94461898 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
94461912 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94461927 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94461942 AAGAAA
1 AAGAAA
94461948 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94461956 original size:15 final size:15
Alignment explanation
Indices: 94461880--94461956 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
94461870 AGAAAACCGA
94461880 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
94461895 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
94461909 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
94461923 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94461939 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94461954 ATA
1 ATA
94461957 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94465014 original size:93 final size:93
Alignment explanation
Indices: 94464902--94465073 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94464892 GCCCATAAGT
* *
94464902 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94464967 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94464995 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94465060 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94465074 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94465069 original size:46 final size:46
Alignment explanation
Indices: 94464894--94465069 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
94464884 TGTAACCCGC
* * *
94464894 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
94464940 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
94464990 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
94465033 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94465070 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:94467516 original size:68 final size:68
Alignment explanation
Indices: 94467432--94467588 Score: 183
Period size: 68 Copynumber: 2.3 Consensus size: 68
94467422 CTTAAAATTA
* * * *
94467432 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
94467496 ATGT
65 ATGT
* * * * * *
94467500 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGTTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
94467565 TGT
66 TGT
* *
94467568 AGTTGTCCGAATCTGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
94467589 TCACAGTTAA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
67 3 0.04
68 71 0.95
69 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:94470874 original size:27 final size:27
Alignment explanation
Indices: 94470844--94470906 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
94470834 GCCTAGCAGG
*
94470844 CTTCGTGCCGGTGATGTGTATTCGGGT
1 CTTCGTGCCAGTGATGTGTATTCGGGT
94470871 CTTCGTGCCAGTGATGTGTATTCGGGT
1 CTTCGTGCCAGTGATGTGTATTCGGGT
94470898 CTTCGTGCC
1 CTTCGTGCC
94470907 TAGCATAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.08, C:0.22, G:0.33, T:0.37
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTGTATTCGGGT
Found at i:94471160 original size:58 final size:58
Alignment explanation
Indices: 94471078--94471246 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 58
94471068 CGAATGATTA
* *
94471078 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACAGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
94471136 GAGGTACAGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGGGATCGGTAATT
1 GAGGCACAGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* ** *
94471194 GAGGCACTGTGTGTGCGAGCT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACAGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
94471247 CAGTAGGCAC
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
57 30 0.30
58 71 0.70
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (58 bp):
GAGGCACAGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:94471181 original size:29 final size:29
Alignment explanation
Indices: 94471081--94471181 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
94471071 ATGATTAGAG
* *
94471081 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATTCCTTTAACCGA
** **
94471110 GCACTATGTGTGCGAGA-T-CGGTAATTGA
1 GCACTATGTGTGCGA-ATTCCTTTAACCGA
*
94471138 GGTAC-AGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTA-TGTGTGCGAATTCCTTTAACCGA
94471168 GCACTATGTGTGCG
1 GCACTATGTGTGCG
94471182 GGATCGGTAA
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
28 8 0.15
29 38 0.70
30 8 0.15
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAATTCCTTTAACCGA
Found at i:94471234 original size:28 final size:28
Alignment explanation
Indices: 94471103--94471246 Score: 114
Period size: 29 Copynumber: 5.0 Consensus size: 28
94471093 CAAATTCCTT
94471103 TAACCGAGCACTATGTGTGCGAGATCGG
1 TAACCGAGCACTATGTGTGCGAGATCGG
** * **
94471131 TAATTGAGGTAC-AGTGTGTGCGA-ATTCCTT
1 TAACCGA-GCACTA-TGTGTGCGAGA-T-CGG
*
94471161 TAACCGAGCACTATGTGTGCGGGATCGG
1 TAACCGAGCACTATGTGTGCGAGATCGG
** * * *
94471189 TAATTGAGGCACTGTGTGTGCGAGCTC-T
1 TAACCGA-GCACTATGTGTGCGAGATCGG
94471217 TCAACCGAGCACTATGTGTGCGAGATCGG
1 T-AACCGAGCACTATGTGTGCGAGATCGG
94471246 T
1 T
94471247 CAGTAGGCAC
Statistics
Matches: 85, Mismatches: 22, Indels: 17
0.69 0.18 0.14
Matches are distributed among these distances:
28 31 0.36
29 46 0.54
30 8 0.09
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (28 bp):
TAACCGAGCACTATGTGTGCGAGATCGG
Found at i:94471256 original size:28 final size:28
Alignment explanation
Indices: 94471168--94471264 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
94471158 CTTTAACCGA
*
94471168 GCACTATGTGTGCGGGATCGGT-AATTGAG
1 GCACTATGTGTGCGAGATCGGTCAA-T-AG
* * * **
94471197 GCACTGTGTGTGCGAGCTC-TTCAACCG
1 GCACTATGTGTGCGAGATCGGTCAATAG
*
94471224 AGCACTATGTGTGCGAGATCGGTCAGTAG
1 -GCACTATGTGTGCGAGATCGGTCAATAG
*
94471253 GCACTAAGTGTG
1 GCACTATGTGTG
94471265 TGAAATGAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
27 1 0.02
28 29 0.56
29 22 0.42
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.26
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATAG
Found at i:94473655 original size:68 final size:68
Alignment explanation
Indices: 94473571--94473727 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
94473561 CTTAAAATTA
* * * *
94473571 AGCTGTTCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTGTTTTATTTAGTAA
94473635 ATGT
65 ATGT
* * * * *
94473639 AGCTGTCCGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTGTTTTATTTAGTAAA
1 AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
94473704 TGT
66 TGT
* *
94473707 AGTTGTCCGAATCTGTT-GATT
1 AGCTGTCCGAATGTGTTAGATT
94473728 TCACAGTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 3 0.04
68 72 0.95
69 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.42
Consensus pattern (68 bp):
AGCTGTCCGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTGTTTTATTTAGTAAA
TGT
Found at i:94474052 original size:2 final size:2
Alignment explanation
Indices: 94474040--94474071 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
94474030 TAAGTGAAAT
*
94474040 TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94474072 ATGAAATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:94478179 original size:12 final size:13
Alignment explanation
Indices: 94478156--94478184 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
94478146 GGGCTATAAC
94478156 TATTGCATTTATT
1 TATTGCATTTATT
94478169 TATTG-ATTTATT
1 TATTGCATTTATT
94478181 TATT
1 TATT
94478185 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:94484308 original size:6 final size:6
Alignment explanation
Indices: 94484298--94484352 Score: 67
Period size: 6 Copynumber: 9.2 Consensus size: 6
94484288 GGTTATTTCA
* * *
94484298 ATTTTA ATTTTG ATTTTG ATTTCT- ATTTCG ATTTTG ATTTTG ATTTTA
1 ATTTTG ATTTTG ATTTTG ATTT-TG ATTTTG ATTTTG ATTTTG ATTTTG
94484346 ATTTTG A
1 ATTTTG A
94484353 AACACTCACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 41 0.98
7 1 0.02
ACGTcount: A:0.22, C:0.04, G:0.11, T:0.64
Consensus pattern (6 bp):
ATTTTG
Found at i:94484325 original size:24 final size:24
Alignment explanation
Indices: 94484292--94484349 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
94484282 ATTTAGGGTT
*
94484292 ATTTCAATTTTAATTTTGATTTTG
1 ATTTCAATTTCAATTTTGATTTTG
* *
94484316 ATTTCTATTTCGATTTTGATTTTG
1 ATTTCAATTTCAATTTTGATTTTG
*
94484340 ATTTTAATTT
1 ATTTCAATTT
94484350 TGAAACACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.05, G:0.09, T:0.64
Consensus pattern (24 bp):
ATTTCAATTTCAATTTTGATTTTG
Found at i:94484484 original size:48 final size:48
Alignment explanation
Indices: 94484431--94484534 Score: 145
Period size: 48 Copynumber: 2.2 Consensus size: 48
94484421 GCCACGTGCA
* *
94484431 TGATGTTTATTATTTGCATCTACCACTGTATGAATGCCATTATCAAAC
1 TGATGTTTATTATGTACATCTACCACTGTATGAATGCCATTATCAAAC
* * * * *
94484479 TGATGTTTGTTGTGTATATCTGCCATTGTATGAATGCCATTATCAAAC
1 TGATGTTTATTATGTACATCTACCACTGTATGAATGCCATTATCAAAC
94484527 TGATGTTT
1 TGATGTTT
94484535 GTTGTGTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.42
Consensus pattern (48 bp):
TGATGTTTATTATGTACATCTACCACTGTATGAATGCCATTATCAAAC
Found at i:94484535 original size:48 final size:48
Alignment explanation
Indices: 94484448--94484545 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
94484438 TATTATTTGC
94484448 ATCTACCACTGTATGAATGCCATTATCAAACTGATGTTTGTTGTGTAT
1 ATCTACCACTGTATGAATGCCATTATCAAACTGATGTTTGTTGTGTAT
* *
94484496 ATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTGTTGTGTAT
1 ATCTACCACTGTATGAATGCCATTATCAAACTGATGTTTGTTGTGTAT
94484544 AT
1 AT
94484546 ATGTCGTTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (48 bp):
ATCTACCACTGTATGAATGCCATTATCAAACTGATGTTTGTTGTGTAT
Found at i:94484661 original size:89 final size:89
Alignment explanation
Indices: 94484509--94484688 Score: 315
Period size: 89 Copynumber: 2.0 Consensus size: 89
94484499 TGCCATTGTA
* * *
94484509 TGAATGCCATTATCAAACTGATGTTTGTTGTGTATATATGTCGTTGTTTGTATCCAAGATGCTAT
1 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATATGCCATTGTTTGTATCCAAGATGCTAT
94484574 ATTGTATGTGGCAAAATCAAAATT
66 ATTGTATGTGGCAAAATCAAAATT
* *
94484598 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
1 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATATGCCATTGTTTGTATCCAAGATGCTAT
94484663 ATTGTATGTGGCAAAATCAAAATT
66 ATTGTATGTGGCAAAATCAAAATT
94484687 TG
1 TG
94484689 TTATTTACCT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (89 bp):
TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATATGCCATTGTTTGTATCCAAGATGCTAT
ATTGTATGTGGCAAAATCAAAATT
Found at i:94487674 original size:16 final size:16
Alignment explanation
Indices: 94487653--94487686 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
94487643 GTAATTCATG
*
94487653 TAATTCAAGTAACTTA
1 TAATTCAAGTAAATTA
*
94487669 TAATTCATGTAAATTA
1 TAATTCAAGTAAATTA
94487685 TA
1 TA
94487687 TAGTTCTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
TAATTCAAGTAAATTA
Found at i:94494921 original size:26 final size:27
Alignment explanation
Indices: 94494871--94494922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
94494861 CTAATTATAT
* **
94494871 AAGTATCTCATGTATCATATTATCCAC
1 AAGTATCTCATATATCATAAAATCCAC
94494898 AAGTAT-TCATATATCATAAAATCCA
1 AAGTATCTCATATATCATAAAATCCA
94494923 TGTAATTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (27 bp):
AAGTATCTCATATATCATAAAATCCAC
Found at i:94495220 original size:23 final size:23
Alignment explanation
Indices: 94495145--94495209 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
94495135 GGTAAGTTTT
* *
94495145 AAAGAGCTG-AACAGTAAGCTCC
1 AAAGAGCTGAAACGGTAAGCCCC
**
94495167 GTAGAGCTGAAACGGTAAGCCCC
1 AAAGAGCTGAAACGGTAAGCCCC
*
94495190 AAAGAGCTTAAACGGTAAGC
1 AAAGAGCTGAAACGGTAAGC
94495210 TCATACGAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
22 7 0.20
23 28 0.80
ACGTcount: A:0.38, C:0.22, G:0.26, T:0.14
Consensus pattern (23 bp):
AAAGAGCTGAAACGGTAAGCCCC
Found at i:94496594 original size:29 final size:28
Alignment explanation
Indices: 94496555--94496615 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
94496545 GTGTTGACTA
* *
94496555 TTTTTTAATATGCATGCAGTGATTATTT
1 TTTTTTAATATGCATACAGTGACTATTT
*
94496583 TTTTTATAATATGCATATAGTGACTATTT
1 TTTTT-TAATATGCATACAGTGACTATTT
94496612 TTTT
1 TTTT
94496616 GGGGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (28 bp):
TTTTTTAATATGCATACAGTGACTATTT
Found at i:94498427 original size:29 final size:29
Alignment explanation
Indices: 94498395--94498454 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
94498385 TCTCTATTTT
94498395 TCCTCTTCTCCTTCTCCTTCTTATTCTTC
1 TCCTCTTCTCCTTCTCCTTCTTATTCTTC
* * * *
94498424 TCCTCTTCTTCTTCTTCTTCTTCTTTTTC
1 TCCTCTTCTCCTTCTCCTTCTTATTCTTC
94498453 TC
1 TC
94498455 TAACCCTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (29 bp):
TCCTCTTCTCCTTCTCCTTCTTATTCTTC
Found at i:94498433 original size:3 final size:3
Alignment explanation
Indices: 94498398--94498453 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
94498388 CTATTTTTCC
* * * *
94498398 TCT TCT CCT TCT CCT TCT TAT TCT TC- TCC TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
94498445 TCT TTT TCT
1 TCT TCT TCT
94498454 CTAACCCTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:94500010 original size:24 final size:22
Alignment explanation
Indices: 94499978--94500025 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
94499968 AAATTGCAAG
* *
94499978 AAAAATAAAATTTATTAACAAAT
1 AAAAATAAAAATTATGAA-AAAT
94500001 AAAAATTAAAAATTATGAAAAAT
1 AAAAA-TAAAAATTATGAAAAAT
94500024 AA
1 AA
94500026 TAAAATAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAAATAAAAATTATGAAAAAT
Found at i:94500828 original size:32 final size:32
Alignment explanation
Indices: 94500787--94500850 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
94500777 ATTGATTCAA
94500787 GGTTATCATCCTTTTAATTTTTTCTATTTTTT
1 GGTTATCATCCTTTTAATTTTTTCTATTTTTT
94500819 GGTTATCATCCTTTTAATTTTTTCTATTTTTT
1 GGTTATCATCCTTTTAATTTTTTCTATTTTTT
94500851 CTTTCGAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.66
Consensus pattern (32 bp):
GGTTATCATCCTTTTAATTTTTTCTATTTTTT
Found at i:94500929 original size:13 final size:13
Alignment explanation
Indices: 94500911--94500936 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94500901 TAAAAAAAAC
94500911 TATTAGATATATA
1 TATTAGATATATA
94500924 TATTAGATATATA
1 TATTAGATATATA
94500937 AAAAAAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATTAGATATATA
Found at i:94501680 original size:21 final size:20
Alignment explanation
Indices: 94501655--94501715 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
94501645 TTCCTTATCG
*
94501655 TTTTTTTTTACTCTTTTATA
1 TTTTTATTTACTCTTTTATA
*
94501675 TATTTTATTTCCTCTTTTATA
1 T-TTTTATTTACTCTTTTATA
*
94501696 TTTTTATTTATTTCTTTTAT
1 TTTTTATTTA-CTCTTTTAT
94501716 CGTTGTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 9 0.26
21 26 0.74
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTATTTACTCTTTTATA
Found at i:94501964 original size:3 final size:3
Alignment explanation
Indices: 94501956--94502058 Score: 149
Period size: 3 Copynumber: 35.0 Consensus size: 3
94501946 TATTGACACA
94501956 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
94502004 TAT TAT TAT TAT TAT TAT TTT TAT TTT TAT T-T TAT T-T T-T TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
*
94502047 TAT TTT TAT TAT
1 TAT TAT TAT TAT
94502059 ATTTTCTTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
2 6 0.07
3 83 0.91
4 2 0.02
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:94508456 original size:3 final size:3
Alignment explanation
Indices: 94508436--94508499 Score: 110
Period size: 3 Copynumber: 21.0 Consensus size: 3
94508426 CAAGCATTAG
*
94508436 ATT ATTT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
94508482 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
94508500 CACATTATTT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:94516409 original size:24 final size:24
Alignment explanation
Indices: 94516382--94516428 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
94516372 TGCTCTACTT
*
94516382 TTTATTGCTATTATCATTACTATA
1 TTTATTACTATTATCATTACTATA
* *
94516406 TTTATTATTATTATTATTACTAT
1 TTTATTACTATTATCATTACTAT
94516429 TATATAGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTATTACTATTATCATTACTATA
Found at i:94516467 original size:2 final size:2
Alignment explanation
Indices: 94516460--94516510 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
94516450 AATATGTACG
94516460 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
94516502 TA TA AA TA T
1 TA TA TA TA T
94516511 TTTTTACTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:94516826 original size:3 final size:3
Alignment explanation
Indices: 94516818--94516862 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
94516808 CTATCAATAC
* *
94516818 TAT TAT TAT TA- TAT TGT TAT TAT TAC TAT TA- TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
94516863 CTTTACCTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
2 6 0.17
3 29 0.83
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:94516841 original size:35 final size:33
Alignment explanation
Indices: 94516794--94516862 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 33
94516784 TTATTTAATG
*
94516794 TATTGTTTTTATTACTATCAATACTATTATTATTA
1 TATTGTTATTATTACTAT-AATACTATT-TTATTA
* *
94516829 TATTGTTATTATTACTATTATATTATTTTATTA
1 TATTGTTATTATTACTATAATACTATTTTATTA
94516862 T
1 T
94516863 CTTTACCTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 7 0.23
34 7 0.23
35 17 0.55
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (33 bp):
TATTGTTATTATTACTATAATACTATTTTATTA
Found at i:94516847 original size:20 final size:19
Alignment explanation
Indices: 94516818--94516861 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
94516808 CTATCAATAC
* *
94516818 TATTATTATTATATTGTTAT
1 TATTACTATTATATTATT-T
94516838 TATTACTATTATATTATTT
1 TATTACTATTATATTATTT
94516857 TATTA
1 TATTA
94516862 TCTTTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTACTATTATATTATTT
Found at i:94519879 original size:24 final size:24
Alignment explanation
Indices: 94519830--94519880 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
94519820 ATGAATCGGC
*
94519830 AAAAGCCGAAATGCCGAAATGCTG
1 AAAAGCCGAAATGCCGAAAAGCTG
* * *
94519854 AAAAGTCGAAATGTCGAAAAGTTG
1 AAAAGCCGAAATGCCGAAAAGCTG
94519878 AAA
1 AAA
94519881 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.14, G:0.24, T:0.16
Consensus pattern (24 bp):
AAAAGCCGAAATGCCGAAAAGCTG
Found at i:94520150 original size:29 final size:29
Alignment explanation
Indices: 94520109--94520203 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 29
94520099 GTGGCTAGGT
*
94520109 CTAACGGGCCATATAAATGTGATTTGGGC
1 CTAATGGGCCATATAAATGTGATTTGGGC
* *
94520138 CTAATGGGTCATATACAA-GTGATTTGGCC
1 CTAATGGGCCATATA-AATGTGATTTGGGC
* * *
94520167 CTAATGGGCCGTATGAATATGA-TTGGGC
1 CTAATGGGCCATATAAATGTGATTTGGGC
*
94520195 TTAATGGGC
1 CTAATGGGC
94520204 AAGATACAGG
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 15 0.27
29 38 0.69
30 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
CTAATGGGCCATATAAATGTGATTTGGGC
Found at i:94522450 original size:2 final size:2
Alignment explanation
Indices: 94522443--94522476 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
94522433 GCTTTGCCAC
*
94522443 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94522477 GTTCTGATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94528806 original size:44 final size:44
Alignment explanation
Indices: 94528743--94528829 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
94528733 AGGACTTTGG
94528743 TTCGAATCCCTTGGACGCAAAGGTTGATTATTTTGCTATGTTGC
1 TTCGAATCCCTTGGACGCAAAGGTTGATTATTTTGCTATGTTGC
94528787 TTCGAAT-CCTTGGCACGCAAAGGTTGATTATTTTGCTATGTTG
1 TTCGAATCCCTTGG-ACGCAAAGGTTGATTATTTTGCTATGTTG
94528830 GGACGGCAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
43 6 0.14
44 36 0.86
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (44 bp):
TTCGAATCCCTTGGACGCAAAGGTTGATTATTTTGCTATGTTGC
Found at i:94529886 original size:27 final size:26
Alignment explanation
Indices: 94529842--94529893 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
94529832 CTCGCTGCAA
*
94529842 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
94529869 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
94529894 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:94529972 original size:27 final size:26
Alignment explanation
Indices: 94529932--94529991 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
94529922 CCACATATAT
* *
94529932 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
94529958 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
94529985 ATATCTG
1 ATATCTG
94529992 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:94535297 original size:40 final size:39
Alignment explanation
Indices: 94535253--94535398 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 39
94535243 TATAACCATG
94535253 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGACATAC
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-CATAC
94535293 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGC--AC
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGA--TAGCATAC
* *
94535332 TAGCACAAATGCCTTCGGGTCTTA-CCCGGAT---ATAA
1 TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGCATAC
*
94535367 TC-CAGCAAATG-CTTCGGGGCTTAGCCCGGATA
1 TCGCA-CAAATGCCTTCGGGTCTTAGCCCGGATA
94535399 TCATTCAATC
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
34 13 0.14
35 15 0.16
36 1 0.01
38 6 0.06
39 25 0.26
40 31 0.33
41 1 0.01
42 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAGCATAC
Found at i:94535417 original size:79 final size:78
Alignment explanation
Indices: 94535255--94535397 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 78
94535245 TAACCATGTC
*
94535255 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGACATACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGACATACTCG-ACAAATGCCTTCGGGGCTTAGCC
*
94535320 CGGATTTAGCACTA
65 CGGATTCAGCACTA
*
94535334 GCACAAATGCCTTCGGGTCTTA-CCCGGATATA-AT-C-C-AGCAAATG-CTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGACATACTCGA-CAAATGCCTTCGGGGCTTAGCC
94535393 CGGAT
65 CGGAT
94535398 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
73 20 0.33
74 6 0.10
75 1 0.02
76 1 0.02
77 2 0.03
78 9 0.15
79 22 0.36
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGACATACTCGACAAATGCCTTCGGGGCTTAGCCC
GGATTCAGCACTA
Found at i:94538053 original size:17 final size:18
Alignment explanation
Indices: 94538011--94538059 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
94538001 AGTTGAAAAG
94538011 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
94538030 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
94538047 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
94538060 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:94538946 original size:40 final size:40
Alignment explanation
Indices: 94538880--94539046 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
94538870 AAATTGAATG
* * *
94538880 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
94538919 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
94538959 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
94538999 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
94539039 ATATCCGG
1 ATATCCGG
94539047 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94546063 original size:17 final size:18
Alignment explanation
Indices: 94546021--94546069 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
94546011 AGTTGAAAAG
94546021 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
94546040 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
94546057 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
94546070 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:94546949 original size:40 final size:40
Alignment explanation
Indices: 94546883--94547033 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
94546873 AAATTGAATG
* * *
94546883 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
94546922 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
94546962 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
94547002 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
94547034 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94573217 original size:18 final size:19
Alignment explanation
Indices: 94573196--94573237 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
94573186 AAGTAATTTC
* *
94573196 AAAATATAAATAAAGA-TA
1 AAAATATAAAAAAAAAGTA
94573214 AAAAT-TAAAAAAAAAGTA
1 AAAATATAAAAAAAAAGTA
94573232 AAAATA
1 AAAATA
94573238 AATAATAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAATATAAAAAAAAAGTA
Found at i:94573222 original size:17 final size:18
Alignment explanation
Indices: 94573196--94573242 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
94573186 AAGTAATTTC
*
94573196 AAAATATAAATAAAGA-TA
1 AAAAT-TAAATAAAAAGTA
*
94573214 AAAATTAAAAAAAAAGTA
1 AAAATTAAATAAAAAGTA
94573232 AAAA-TAAATAA
1 AAAATTAAATAA
94573243 TAGGTGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (18 bp):
AAAATTAAATAAAAAGTA
Found at i:94577179 original size:27 final size:28
Alignment explanation
Indices: 94577149--94577217 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
94577139 ATAGTAAGTC
*
94577149 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
94577176 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
*
94577204 CGCACGCTTAGTGC
1 CGCACACTTAGTGC
94577218 CAATCTCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.41
28 21 0.57
29 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:94579422 original size:25 final size:25
Alignment explanation
Indices: 94579394--94579450 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
94579384 ATAAAAGAGA
*
94579394 AAATTAGAAAATAAAATAAAAT-TCT
1 AAATTA-AAAATAAAATAAAATGGCT
* *
94579419 AAATTACAAATAAATTAAAATGGCT
1 AAATTAAAAATAAAATAAAATGGCT
94579444 AAATTAA
1 AAATTAA
94579451 TAAAAATGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 13 0.48
25 14 0.52
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.28
Consensus pattern (25 bp):
AAATTAAAAATAAAATAAAATGGCT
Found at i:94579437 original size:24 final size:25
Alignment explanation
Indices: 94579402--94579449 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
94579392 GAAAATTAGA
*
94579402 AAATAAAATAAAAT-TCTAAATTAC
1 AAATAAAATAAAATGGCTAAATTAC
*
94579426 AAATAAATTAAAATGGCTAAATTA
1 AAATAAAATAAAATGGCTAAATTA
94579450 ATAAAAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATAAAATAAAATGGCTAAATTAC
Found at i:94590972 original size:6 final size:6
Alignment explanation
Indices: 94590954--94591047 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
94590944 AAGAAACATT
* * *
94590954 ATCAGA A-CTAGA ATGAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
94591003 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
94591048 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 59 0.84
7 5 0.07
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:94590975 original size:18 final size:18
Alignment explanation
Indices: 94590954--94591047 Score: 77
Period size: 19 Copynumber: 5.1 Consensus size: 18
94590944 AAGAAACATT
*
94590954 ATCAGAA-CTAGAATGAGA
1 ATCAGAATC-AGAATCAGA
94590972 ATCAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAGA
* *
94590990 ATTAG-GTGACAGAATCAGA
1 ATCAGAAT--CAGAATCAGA
*
94591009 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
94591029 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
94591046 AT
1 AT
94591048 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.05
18 27 0.44
19 28 0.46
20 3 0.05
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:94591006 original size:31 final size:31
Alignment explanation
Indices: 94590969--94591047 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
94590959 AACTAGAATG
* *
94590969 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
94591000 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
94591031 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
94591048 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:94592115 original size:27 final size:27
Alignment explanation
Indices: 94592024--94592107 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
94592014 GGGCATATTC
* *
94592024 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
94592051 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACG
94592078 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
94592105 GTC
1 GTC
94592108 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:94592199 original size:27 final size:27
Alignment explanation
Indices: 94592169--94592254 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
94592159 GTAAATCTAC
94592169 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
94592196 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
94592222 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
94592252 AAA
1 AAA
94592255 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.46
28 7 0.15
29 17 0.35
30 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:94592272 original size:27 final size:27
Alignment explanation
Indices: 94592232--94592301 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
94592222 AGAAAGTCAA
* ** *
94592232 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTAAAAACTAG
94592259 GGGTATTTTGGTAATTTTAAAAACTAG
1 GGGTATTTTGGTAATTTTAAAAACTAG
94592286 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
94592302 CTATCCTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.27, C:0.01, G:0.24, T:0.47
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTAAAAACTAG
Found at i:94592274 original size:56 final size:55
Alignment explanation
Indices: 94592169--94592301 Score: 128
Period size: 56 Copynumber: 2.4 Consensus size: 55
94592159 GTAAATCTAC
* * *
94592169 AAAC-CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAG
1 AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTTTAA
* * ** * *
94592224 AAAGTCAAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTT-TGGTAATTTTAA
1 AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTTTAA
* *
94592279 AAACT-AGGGGTATTTTGGTAATT
1 AAACTCAAGGGTATTTTAGTAATT
94592302 CTATCCTACA
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
54 16 0.25
55 13 0.20
56 35 0.55
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (55 bp):
AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTAA
Found at i:94592474 original size:27 final size:27
Alignment explanation
Indices: 94592333--94592472 Score: 199
Period size: 27 Copynumber: 5.2 Consensus size: 27
94592323 GTAATTTCAC
* * *
94592333 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
94592360 AATCTAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
94592387 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
94592414 AATCGAGGGTAAAACGGTAATTCCGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
94592441 AATCGGGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
94592468 AATCG
1 AATCG
94592473 GGTACTTTGG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:94595923 original size:50 final size:49
Alignment explanation
Indices: 94595805--94595988 Score: 226
Period size: 50 Copynumber: 3.7 Consensus size: 49
94595795 TTGGTACGCA
* * *
94595805 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTAT-CGATACACG
**
94595854 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC-GATACACG
* * * * *
94595904 TAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCGA-TACACG
*
94595955 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
94595989 CACAATAGAT
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
49 32 0.28
50 46 0.40
51 37 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCGATACACG
Found at i:94595978 original size:101 final size:99
Alignment explanation
Indices: 94595805--94595988 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 99
94595795 TTGGTACGCA
* *
94595805 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
94595870 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * * *
94595904 TAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTAT-CGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG-GTACACATAGTAGCCTGCAC
*
94595968 TTAGTACTACACATGTGACCT
63 TTAGTACTACACACGTGACCT
94595989 CACAATAGAT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
99 28 0.37
100 5 0.07
101 42 0.56
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:94601037 original size:49 final size:49
Alignment explanation
Indices: 94600976--94601165 Score: 211
Period size: 50 Copynumber: 3.8 Consensus size: 49
94600966 AAGCTATCTA
* * *
94600976 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCG
** *
94601025 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCG
* * * * *
94601075 ATACACGTAGTAGCGTGGACTTAGTACTACACACGTGATCGAAGTTAT-CG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCG
* * *
94601125 AGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGACC
1 -GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
94601166 TCACAATAGA
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 37 0.32
50 44 0.38
51 34 0.30
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCG
Found at i:94601164 original size:101 final size:99
Alignment explanation
Indices: 94600983--94601166 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 99
94600973 CTAGTACGCA
*
94600983 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
94601048 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTAAACACGTGACCTAACCATCTGATACACG
* * * * *
94601082 TAGTAGCGTGGACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG-GTACACATAGTAGCCTGCAC
*
94601146 TTAGTACTAAACATGTGACCT
63 TTAGTACTAAACACGTGACCT
94601167 CACAATAGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 27 0.36
100 5 0.07
101 42 0.57
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTAAACACGTGACCTAACCATCTGATACACG
Found at i:94602410 original size:19 final size:18
Alignment explanation
Indices: 94602367--94602410 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
94602357 TCCGACTAAG
94602367 CCCAAAATCAGGATGTTA
1 CCCAAAATCAGGATGTTA
94602385 CCCAAAATCAGGATGTTA
1 CCCAAAATCAGGATGTTA
94602403 CACCAAAA
1 C-CCAAAA
94602411 CCCTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.18
Consensus pattern (18 bp):
CCCAAAATCAGGATGTTA
Found at i:94605660 original size:17 final size:18
Alignment explanation
Indices: 94605628--94605661 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94605618 ATAACCCCAT
*
94605628 ATTCTACCTCCTAAACCC
1 ATTCTAACTCCTAAACCC
94605646 ATTCTAACT-CTAAACC
1 ATTCTAACTCCTAAACC
94605662 TTTTGGGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.38, G:0.00, T:0.29
Consensus pattern (18 bp):
ATTCTAACTCCTAAACCC
Found at i:94608274 original size:37 final size:37
Alignment explanation
Indices: 94608227--94608329 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 37
94608217 TTATGATGAC
*
94608227 CCGCTAGACTTGTCCTTATGTTCCAAGTTAAGACAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* * * *
94608264 TCGCTGGACTTGTCCTTATATTCCAAATTAAGATAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* *
94608301 CCGCTGGACTTGTCCTCATGTACCAAGTT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTT
94608330 TTAACGGTCT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (37 bp):
CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
Found at i:94617626 original size:15 final size:16
Alignment explanation
Indices: 94617606--94617636 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94617596 GTTATTCTAA
94617606 AAAATTA-AAAAAATT
1 AAAATTATAAAAAATT
94617621 AAAATTATAAAAAATT
1 AAAATTATAAAAAATT
94617637 TTTCTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATTATAAAAAATT
Found at i:94619077 original size:33 final size:33
Alignment explanation
Indices: 94619030--94619101 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
94619020 GCCTTATTAC
94619030 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
*
94619063 ATAAGTTAAAACCCAAAACGAAATCTAATAGCAA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGC-A
94619097 ATAAA
1 ATAAA
94619102 AGAAACAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 31 0.86
34 5 0.14
ACGTcount: A:0.58, C:0.17, G:0.07, T:0.18
Consensus pattern (33 bp):
ATAAATTAAAACCCAAAACGAAATCTAATAGCA
Found at i:94620104 original size:8 final size:8
Alignment explanation
Indices: 94620088--94620130 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
94620078 AAGGCCGCTC
94620088 TTTCGGCT
1 TTTCGGCT
*
94620096 TTTCAGCT
1 TTTCGGCT
94620104 TTTCGGCT
1 TTTCGGCT
*
94620112 TTTTGGCT
1 TTTCGGCT
*
94620120 TTTCAGCT
1 TTTCGGCT
94620128 TTT
1 TTT
94620131 GTCGTTCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.05, C:0.21, G:0.19, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:94623327 original size:46 final size:46
Alignment explanation
Indices: 94623263--94623533 Score: 192
Period size: 46 Copynumber: 5.8 Consensus size: 46
94623253 TGACATTGGG
* *
94623263 TGATATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCAT
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGC-T
*
94623309 TGATATGAGAGCTAGTGTAAGACATATCTGGGACAT-GCATCGGCCTT
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-T
* * * * *
94623356 TAGATAT-ACAAGCTAGTGTAATACCTGTCTAGGACATGGCATCAGCT
1 T-GATATGA-GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
* * * * * * * *
94623403 TGTTATGTG-TC-AGTGTAAGACATGTCTAGGATATGGCATTGACAC
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGC-T
* * * * *
94623448 CGATAGATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATTGACT
1 TGAT--ATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
* * ** *
94623496 AGATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATG
1 TGATATGAGAGCTAGTGTAAGA-CATGTCTGGGACATG
94623534 AAATTGGTGT
Statistics
Matches: 180, Mismatches: 34, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
44 26 0.14
45 3 0.02
46 59 0.33
47 24 0.13
48 33 0.18
49 35 0.19
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (46 bp):
TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
Found at i:94624479 original size:30 final size:30
Alignment explanation
Indices: 94624443--94624511 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
94624433 CACGGGCAGA
94624443 GACACGGCCGTGTGTCTCAGCCTTGTGGAG
1 GACACGGCCGTGTGTCTCAGCCTTGTGGAG
94624473 GACACGGCCGTGTGTCTCAGCCTTGTGGAG
1 GACACGGCCGTGTGTCTCAGCCTTGTGGAG
94624503 GACACGGCC
1 GACACGGCC
94624512 TCTGGTCACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.20
Consensus pattern (30 bp):
GACACGGCCGTGTGTCTCAGCCTTGTGGAG
Found at i:94625266 original size:25 final size:25
Alignment explanation
Indices: 94625238--94625294 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
94625228 TCTCATCAAA
94625238 ATTTT-GCTCTAATAAAATTTTGACG
1 ATTTTAGC-CTAATAAAATTTTGACG
*
94625263 ATTTTACGCCTAATAAAATTTTGATG
1 ATTTTA-GCCTAATAAAATTTTGACG
94625289 ATTTTA
1 ATTTTA
94625295 CCCTCGGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 5 0.17
26 22 0.76
27 2 0.07
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (25 bp):
ATTTTAGCCTAATAAAATTTTGACG
Found at i:94625309 original size:26 final size:26
Alignment explanation
Indices: 94625246--94625295 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
94625236 AAATTTTGCT
94625246 CTAATAAAATTTTGACGATTTTACGC
1 CTAATAAAATTTTGACGATTTTACGC
*
94625272 CTAATAAAATTTTGATGATTTTAC
1 CTAATAAAATTTTGACGATTTTAC
94625296 CCTCGGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (26 bp):
CTAATAAAATTTTGACGATTTTACGC
Found at i:94628718 original size:15 final size:16
Alignment explanation
Indices: 94628698--94628727 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94628688 GTTATTCTAA
94628698 AAAATTA-AAAAAATT
1 AAAATTATAAAAAATT
94628713 AAAATTATAAAAAAT
1 AAAATTATAAAAAAT
94628728 ATTTTTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATTATAAAAAATT
Found at i:94630278 original size:70 final size:70
Alignment explanation
Indices: 94630165--94630303 Score: 269
Period size: 70 Copynumber: 2.0 Consensus size: 70
94630155 AATCCTAAAT
94630165 ATTTAACCATCATTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCATTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
94630230 CCTTC
66 CCTTC
*
94630235 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCATTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
94630300 CCTT
66 CCTT
94630304 TCTCTCCTTA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.27, C:0.18, G:0.06, T:0.50
Consensus pattern (70 bp):
ATTTAACCATCATTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
CCTTC
Found at i:94632371 original size:26 final size:26
Alignment explanation
Indices: 94632342--94632449 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
94632332 TGGTACAAAT
*
94632342 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94632368 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94632394 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94632420 TGTTAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94632446 TGAT
1 TGAT
94632450 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94638725 original size:46 final size:46
Alignment explanation
Indices: 94638675--94638841 Score: 228
Period size: 46 Copynumber: 3.6 Consensus size: 46
94638665 TGATGTCATA
* * * * *
94638675 GTATCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGTCACG
1 GTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGTTGCCATG
**
94638721 GTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGTTGCCATG
* * *
94638767 GTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGTTGCCATG
94638813 GTATCTTTCAACCATGGTCTTACACATTT
1 GTATCTTTCAACCATGGTCTTACACATTT
94638842 CATATCAGAG
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
45 5 0.05
46 100 0.92
47 4 0.04
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGTTGCCATG
Found at i:94640993 original size:29 final size:27
Alignment explanation
Indices: 94640947--94641001 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
94640937 AATAATAAAA
*
94640947 TATCTTATTAAAATATTAATAATAATATT
1 TATCTAATTAAAATATT-ATAA-AATATT
94640976 TATCTAATT-AAATAATTATAAAATAT
1 TATCTAATTAAAAT-ATTATAAAATAT
94641002 CAAAATATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 5 0.21
28 8 0.33
29 11 0.46
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
TATCTAATTAAAATATTATAAAATATT
Found at i:94641702 original size:141 final size:140
Alignment explanation
Indices: 94641448--94641736 Score: 461
Period size: 141 Copynumber: 2.1 Consensus size: 140
94641438 TCAAGGTATT
*
94641448 ACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACT
1 ACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACC
* * ** *
94641513 CTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAA
66 CTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCAA
*
94641578 CACTATGTTG
131 CACTATGTCG
**
94641588 ACACTTTTGGGCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAAC
1 ACACTTTTGGGCCGACAC-TTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAAC
* * *
94641653 CCTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTATATAAGAGTCATCTTTGTTCA
65 CCTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCA
94641718 ACACTATGTCG
130 ACACTATGTCG
94641729 ACACTTTT
1 ACACTTTT
94641737 CTAAGTGTTG
Statistics
Matches: 136, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
140 18 0.13
141 118 0.87
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (140 bp):
ACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACC
CTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCAA
CACTATGTCG
Found at i:94641839 original size:126 final size:127
Alignment explanation
Indices: 94641598--94641993 Score: 355
Period size: 126 Copynumber: 3.0 Consensus size: 127
94641588 ACACTTTTGG
* *
94641598 GCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCCTTTATATA
1 GCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATA
* * * *
94641663 AGAGTTGGGATATACATACCTAAAACAACGCTTATATAAGAGTCATCTTTGTTCAACACTAT
66 AGAGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTAT
* * * ** * *
94641725 GTCGACACTTTT-CTAAGTGTTGGGGTAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATA
1 GCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATA
* ** * * *
94641789 AGAGTTGGTATATGTATACCTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAATACTAT
66 AGAGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTAT
* **
94641851 GCCGACACTTTTACGCTAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATGCTTTGGCC
1 GCCG--AC----A--CT-----TTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCC
** * * * * ** * * *
94641916 AACTTTTTGTATAAG-GATCGGGATATGCATGCCTAAGGCAACGCTAAAATAAGAGTCAGTTTTG
53 AACCCTTTATATAAGAG-TTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTG
94641980 TCCAACACTAT
117 TCCAACACTAT
94641991 GCC
1 GCC
94641994 AACTTGTGTT
Statistics
Matches: 218, Mismatches: 36, Indels: 17
0.80 0.13 0.06
Matches are distributed among these distances:
126 99 0.45
127 11 0.05
128 2 0.01
132 1 0.00
134 2 0.01
139 4 0.02
140 99 0.45
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (127 bp):
GCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATA
AGAGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTAT
Done.