Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 329 of 444
Found at i:94907385 original size:23 final size:23
Alignment explanation
Indices: 94907331--94907456 Score: 162
Period size: 23 Copynumber: 5.1 Consensus size: 23
94907321 CCTAGCCTCT
*
94907331 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
94907354 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
94907378 TTTAATAACTGGGGCATAAGCTTTATGCCC
1 TTTAATAACTGGGGCAT-A-----A-GCCC
94907408 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
94907431 TTTAATAACAGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
94907454 TTT
1 TTT
94907457 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 2, Indels: 15
0.85 0.02 0.14
Matches are distributed among these distances:
23 46 0.49
24 24 0.26
29 2 0.02
30 21 0.23
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:94907431 original size:53 final size:54
Alignment explanation
Indices: 94907350--94907451 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 54
94907340 TGGGGCAAAA
*
94907350 GCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCTTTAT
1 GCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACAGGGGCATAAGCTTTAT
94907404 GCCC-TTTAATAACTGGGGCATAAGCCCTTTAATAACAGGGGCATAAGC
1 GCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACAGGGGCATAAGC
94907452 CCTTTTGCAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 43 0.91
54 4 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (54 bp):
GCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACAGGGGCATAAGCTTTAT
Found at i:94907532 original size:20 final size:20
Alignment explanation
Indices: 94907507--94907573 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
94907497 TTATGAATAC
94907507 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
94907527 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
94907547 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
94907567 ACCATGT
1 ATCATGT
94907574 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:94912405 original size:48 final size:47
Alignment explanation
Indices: 94912339--94912588 Score: 203
Period size: 48 Copynumber: 5.4 Consensus size: 47
94912329 TGATACCATA
* *
94912339 TCCCAGATATG-CTCTACACTGGCTCTCATATATTTGTGCTGATGCATG
1 TCCCAGACATGTCT-TACACTGGCTCTCATATATTTG-GCCGATGCATG
* *
94912387 TCCCAGACATGTCTTACACTGGCTCTCATATATCTGTACCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCTCATATATTTG-GCCGATGCATG
* * *
94912435 TCCCAAACATGTCTTACACTAGCACATC-TCATA----GCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTC-TCAT-ATATTTGGCCGATGCATG
* * *** *
94912479 TCCGAGACATGTCTTACACTGGCT-TACATCT-CGAGGCAGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCT-CATATATTTGGCCGATGCATG
* * * * *
94912525 TCCTAGACATGTCTTACACTAGCATTTCATA-ATGTGGCCGATGCATT
1 TCCCAGACATGTCTTACACTGGC-TCTCATATATTTGGCCGATGCATG
*
94912572 TTCCAGACATGTCTTAC
1 TCCCAGACATGTCTTAC
94912589 GTTGGCTCAT
Statistics
Matches: 167, Mismatches: 23, Indels: 25
0.78 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 31 0.19
46 31 0.19
47 30 0.18
48 65 0.39
49 7 0.04
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTGGCTCTCATATATTTGGCCGATGCATG
Found at i:94912481 original size:92 final size:89
Alignment explanation
Indices: 94912379--94912548 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 89
94912369 TATTTGTGCT
* *
94912379 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCTGTA-CCGATGCATGTCCCAAAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATATC-G-AGCAGATGCATGTCCCAAAC
94912443 ATGTCTTACACTAGCACATCTCATAGCC
62 ATGTCTTACACTAGCACATCTCATAGCC
* * * *
94912471 GATGCATGTCCGAGACATGTCTTACACTGGCTTACATCTCGAGGCAGATGCATGTCCTAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGA-GCAGATGCATGTCCCAAACATG
94912536 TCTTACACTAGCA
65 TCTTACACTAGCA
94912549 TTTCATAATG
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 36 0.51
91 1 0.01
92 31 0.44
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (89 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGCAGATGCATGTCCCAAACATGT
CTTACACTAGCACATCTCATAGCC
Found at i:94912525 original size:46 final size:45
Alignment explanation
Indices: 94912379--94912588 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 45
94912369 TATTTGTGCT
* *
94912379 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATATCTGTA-CC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCTC-G-AGCC
* * *
94912427 GATGCATGTCCCAAACATGTCTTACACTAGC--ACATCTCATAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-GAGCC
* *
94912471 GATGCATGTCCGAGACATGTCTTACACTGGCTTACATCTCGAGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA-GCC
* * * * *
94912517 GATGCATGTCCTAGACATGTCTTACACTAGCATTTCATAAT-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACAT-CTCG-AGCC
* *
94912564 GATGCATTTTCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
94912589 GTTGGCTCAT
Statistics
Matches: 135, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 35 0.26
45 1 0.01
46 38 0.28
47 30 0.22
48 30 0.22
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGCC
Found at i:94914338 original size:43 final size:43
Alignment explanation
Indices: 94914283--94914423 Score: 162
Period size: 43 Copynumber: 3.3 Consensus size: 43
94914273 ATGGGATTGT
* *
94914283 GTGTAAAACCATGTCTGGAACATTGGCATCATATTGTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATATTGTGATTTC
*
94914326 GTAG-AAGACCATGTCTGGGACATTGGCATCGT-TATGTGATTTC
1 GT-GTAAGACCATGTCTGGGACATTGGCATCATAT-TGTGATTTC
* * **
94914369 GTGTAAGACCATGCCTGGGACATCGGCATCGATA-TGTGATAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATTGTGATTTC
*
94914412 ATGTAAGACCAT
1 GTGTAAGACCAT
94914424 ATCTAGGATA
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
42 2 0.02
43 80 0.95
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCATATTGTGATTTC
Found at i:94916261 original size:54 final size:53
Alignment explanation
Indices: 94916175--94916379 Score: 185
Period size: 54 Copynumber: 3.8 Consensus size: 53
94916165 ATTAGGGTTT
* * * * *
94916175 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAATTTTCACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA-CTTCATAAGGC
* * * * * *
94916229 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AACTTC-ATAAGGC
* * * * * * *
94916284 AAAGATCCCATGTAAGACCGTGCCAAGGCATGACAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAACTTCATAAGGC
* * *
94916337 AAGGATACCACGTAAAGACCATGTCAAGACATGGAAATGGTAA
1 AAGGATACCATGT-AAGACCATGCCAAGACATGGCAATGGTAA
94916380 GTTTAAAAAG
Statistics
Matches: 117, Mismatches: 31, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
53 17 0.15
54 62 0.53
55 38 0.32
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAACTTCATAAGGC
Found at i:94919865 original size:27 final size:27
Alignment explanation
Indices: 94919547--94919863 Score: 395
Period size: 27 Copynumber: 11.7 Consensus size: 27
94919537 TACTGAAATG
** *
94919547 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
94919574 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
94919601 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
94919628 CCCT-TAGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
94919655 CCCCCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
94919682 CCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
94919709 CCC-CTGATTTACATAATTATCGTTTTA
1 CCCTC-GATTTACAGAATTACCGTTTTA
*
94919736 CCCTCGACTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
94919763 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
94919790 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * **
94919817 CCCTTGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
94919844 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
94919864 TAAAATACCC
Statistics
Matches: 261, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 257 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:94919872 original size:27 final size:27
Alignment explanation
Indices: 94919788--94920009 Score: 162
Period size: 27 Copynumber: 8.2 Consensus size: 27
94919778 ATTACCGTTT
* ***
94919788 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
94919815 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
94919842 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
94919869 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* *
94919896 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * * * **
94919923 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
94919950 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
94919977 TACCC-CTGATTTACAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
94920004 TACCCT
1 TACCCT
94920010 TAGTTTGTAG
Statistics
Matches: 162, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 160 0.99
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:94919900 original size:81 final size:81
Alignment explanation
Indices: 94919761--94920009 Score: 221
Period size: 81 Copynumber: 3.1 Consensus size: 81
94919751 ATTACCGTTT
* **** * * * * *** *
94919761 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
* ***
94919826 TATAGAATTACTATTT
66 TATAAAATTACTAAAA
* * *
94919842 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-AGT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-T
*
94919906 TTGTAAAATTACTAAAA
65 TTATAAAATTACTAAAA
* * *** *
94919923 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
* *
94919988 TACAAAATTACTGAAA
66 TATAAAATTACTAAAA
94920004 TACCCT
1 TACCCT
94920010 TAGTTTGTAG
Statistics
Matches: 133, Mismatches: 33, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
80 1 0.01
81 131 0.98
82 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
TATAAAATTACTAAAA
Found at i:94920010 original size:81 final size:81
Alignment explanation
Indices: 94919857--94920036 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
94919847 TCGATTTACA
* * * **
94919857 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACTAAA
*
94919922 ATACCCTTGGTTTGTG
66 ATACCCTTAGTTTGTG
* *
94919938 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACTGA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACTAA
94920002 AATACCCTTAGTTTGT-
65 AATACCCTTAGTTTGTG
* *
94920018 AGATTTACCAAAACACCCT
1 A-AATTACCAAAATACCCT
94920037 TGTAGGATGA
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.02
81 84 0.98
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACTAAA
ATACCCTTAGTTTGTG
Found at i:94920025 original size:27 final size:27
Alignment explanation
Indices: 94919856--94920037 Score: 204
Period size: 27 Copynumber: 6.7 Consensus size: 27
94919846 CTCGATTTAC
*
94919856 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
94919883 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
94919910 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
94919937 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* **
94919964 AAAATTACCAAAATACCCCT-GATTTAC
1 AAAATTACCAAAATACCCTTAG-TTTGT
**
94919991 AAAATTACTGAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
94920018 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
94920038 GTAGGATGAA
Statistics
Matches: 125, Mismatches: 28, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
27 124 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:94920090 original size:27 final size:27
Alignment explanation
Indices: 94920056--94920132 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
94920046 AAATGTCTAA
94920056 AATACCCCTATTA-GGTAAAATGACCGT
1 AATACCCCTA-TAGGGTAAAATGACCGT
*
94920083 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAATGACCGT
* *
94920110 AATACCCCTGTATGGTAAAATGA
1 AATACCCCTATAGGGTAAAATGA
94920133 TGAATATGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGT
Found at i:94921389 original size:9 final size:9
Alignment explanation
Indices: 94921377--94921433 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
94921367 TTTGATAAAC
94921377 ATGATATGT
1 ATGATATGT
*
94921386 ATGATATGCAC
1 ATGATATG--T
*
94921397 ATGACATGT
1 ATGATATGT
*
94921406 ATGATATGCAC
1 ATGATATG--T
94921417 ATGATATGT
1 ATGATATGT
94921426 ATGATATG
1 ATGATATG
94921434 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:94921400 original size:20 final size:20
Alignment explanation
Indices: 94921375--94921445 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
94921365 ATTTTGATAA
94921375 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94921395 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
94921415 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94921435 ACATGAGATGT
1 ACATGATATGT
94921446 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:94921422 original size:11 final size:11
Alignment explanation
Indices: 94921386--94921440 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
94921376 CATGATATGT
94921386 ATGATATGCAC
1 ATGATATGCAC
* *
94921397 ATGACATG--T
1 ATGATATGCAC
94921406 ATGATATGCAC
1 ATGATATGCAC
*
94921417 ATGATATG--T
1 ATGATATGCAC
94921426 ATGATATGCAC
1 ATGATATGCAC
94921437 ATGA
1 ATGA
94921441 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94921523 original size:23 final size:24
Alignment explanation
Indices: 94921492--94921702 Score: 335
Period size: 23 Copynumber: 9.0 Consensus size: 24
94921482 AGGAAGTACA
94921492 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
94921516 -AAAGGGCTTATGCCCAAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94921539 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94921563 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94921586 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94921610 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
94921633 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
94921656 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
94921679 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
94921703 ATGATAAAGC
Statistics
Matches: 176, Mismatches: 5, Indels: 11
0.92 0.03 0.06
Matches are distributed among these distances:
23 109 0.62
24 60 0.34
25 7 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:94921561 original size:47 final size:47
Alignment explanation
Indices: 94921492--94921702 Score: 347
Period size: 47 Copynumber: 4.5 Consensus size: 47
94921482 AGGAAGTACA
*
94921492 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
94921539 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
94921586 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
94921633 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
*
94921679 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
94921703 ATGATAAAGC
Statistics
Matches: 157, Mismatches: 3, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
46 31 0.20
47 118 0.75
48 8 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:94921614 original size:70 final size:71
Alignment explanation
Indices: 94921492--94921681 Score: 325
Period size: 70 Copynumber: 2.7 Consensus size: 71
94921482 AGGAAGTACA
*
94921492 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCAAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCC
94921556 AGTTATT
65 AGTTATT
94921563 -AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
94921627 GTTATT
66 GTTATT
*
94921633 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAA
94921682 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
69 15 0.13
70 69 0.60
71 31 0.27
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GTTATT
Found at i:94921930 original size:31 final size:31
Alignment explanation
Indices: 94921895--94921958 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
94921885 CGTTTACAGT
*
94921895 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
94921926 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
94921957 AA
1 AA
94921959 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:94942248 original size:40 final size:39
Alignment explanation
Indices: 94942137--94942287 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
94942127 ATAAGCATGT
* ** *
94942137 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
94942177 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *** *
94942217 GCACAATTGCCTTTGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
94942257 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
94942288 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:94946949 original size:30 final size:30
Alignment explanation
Indices: 94946913--94947013 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
94946903 GACAAGATTG
* * *
94946913 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
94946943 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
94946971 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
94947000 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
94947014 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:94947025 original size:29 final size:28
Alignment explanation
Indices: 94946942--94947017 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
94946932 AAAATTGTAC
* *
94946942 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
94946970 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
94946999 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
94947018 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:94955068 original size:30 final size:30
Alignment explanation
Indices: 94955032--94955132 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
94955022 GACAAGATTG
* * *
94955032 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
94955062 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
94955090 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
94955119 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
94955133 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:94955144 original size:29 final size:28
Alignment explanation
Indices: 94955061--94955136 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
94955051 AAAATTGTAC
* *
94955061 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
94955089 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
94955118 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
94955137 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:94976689 original size:47 final size:47
Alignment explanation
Indices: 94976608--94977184 Score: 969
Period size: 47 Copynumber: 12.3 Consensus size: 47
94976598 ATGTATGAGA
94976608 TATATATGTGATAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94976654 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
94976701 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94976748 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
94976795 TATATATGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94976841 TATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94976888 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94976935 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94976982 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94977029 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
94977076 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
94977123 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94977170 TATAAATGTGATAAG
1 TATATATGTGATAAG
94977185 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 25, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
46 63 0.12
47 441 0.88
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:94977365 original size:37 final size:37
Alignment explanation
Indices: 94977302--94977384 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
94977292 CCGAGCTCTA
* * * *
94977302 AAGACCTGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGAAGATTATGTCCGGGT
*
94977339 AAGACCCGATGACCACGGGTGAAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGAAGATTATGTCCGGGT
*
94977376 AAGCCCCGA
1 AAGACCCGA
94977385 ACTAAAGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGAAGATTATGTCCGGGT
Found at i:94979339 original size:40 final size:40
Alignment explanation
Indices: 94979284--94979485 Score: 307
Period size: 40 Copynumber: 5.0 Consensus size: 40
94979274 GAGAATTGAG
94979284 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
94979324 AGTGATATATCCGGACTAACTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
94979364 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
94979404 AGTGATATATCTGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * **
94979444 AGTGATATATTCGGGCGAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTC-CGAAGAGCATTCGTGCT
94979484 AG
1 AG
94979486 AATTATGAGG
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 149 0.99
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:94982706 original size:47 final size:47
Alignment explanation
Indices: 94982625--94983202 Score: 944
Period size: 47 Copynumber: 12.3 Consensus size: 47
94982615 GTATGAGATA
94982625 TATATATGTGATAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94982671 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94982718 CATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94982765 TATATAAGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94982812 TATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
94982859 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94982906 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94982953 TATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
* *
94983000 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
94983047 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
94983094 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * *
94983141 TATATATGTGATAAGGCCGAGTCGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
94983188 TATAAATGTGATAAG
1 TATATATGTGATAAG
94983203 TCCGAAGGCA
Statistics
Matches: 503, Mismatches: 26, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
46 19 0.04
47 482 0.96
48 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:94983376 original size:37 final size:37
Alignment explanation
Indices: 94983317--94983399 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
94983307 CCGAGCTCTA
* *
94983317 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
* *
94983354 AAGACCCGATGACCACGGGTGGAGATTTTGTCTGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
94983391 AAGCCCCGA
1 AAGACCCGA
94983400 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:94996848 original size:45 final size:44
Alignment explanation
Indices: 94996691--94996864 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
94996681 TATTTGGCAT
94996691 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
94996736 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
94996784 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
94996829 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94996865 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94999799 original size:15 final size:15
Alignment explanation
Indices: 94999779--94999847 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
94999769 GTATCTTGGG
94999779 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
94999794 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
94999809 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
94999824 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
94999839 TTTCTTTAT
1 TTTCTTTAT
94999848 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:94999848 original size:30 final size:30
Alignment explanation
Indices: 94999770--94999857 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
94999760 CATAGTATCG
* * * *
94999770 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
94999800 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
94999830 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
94999858 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:95002386 original size:45 final size:44
Alignment explanation
Indices: 95002229--95002402 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
95002219 ATTTGGGCAT
95002229 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
95002274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
95002322 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
95002367 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95002403 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:95005573 original size:46 final size:47
Alignment explanation
Indices: 95005484--95005603 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 47
95005474 ACATTATGAG
* * ** *
95005484 AGCCAATGTAAGACCATGTTTGGGACATTGCATCGGTATTGAGACG-A
1 AGCCAGTGTAAGA-CATGTCTAAGACATTGCATCGGCATTGAGACGTA
* * *
95005531 GAGCTAGTGTAAGACATGTCTAAGACA-TGCATCGGCCTTGAGATGTA
1 -AGCCAGTGTAAGACATGTCTAAGACATTGCATCGGCATTGAGACGTA
*
95005578 AGCCAGTGTAAGACATGTCTGAGACA
1 AGCCAGTGTAAGACATGTCTAAGACA
95005604 GAAGTTCCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
46 39 0.64
47 11 0.18
48 11 0.18
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTAAGACATTGCATCGGCATTGAGACGTA
Found at i:95005945 original size:50 final size:50
Alignment explanation
Indices: 95005881--95006013 Score: 155
Period size: 49 Copynumber: 2.7 Consensus size: 50
95005871 GAGATGTGTC
*
95005881 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-GGATATGT-GAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTCGAT-T-TCGAGAGCT
* * * * *
95005931 AGTGTAAGACCATGTCTGGAACATGGCGTTAGC-CTCGATTTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTCGATTTCGAGAGCT
* *
95005980 AGTGTAAGACCATATCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA
95006014 TTATACCCTA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 35 0.51
50 33 0.48
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTCGATTTCGAGAGCT
Found at i:95007959 original size:40 final size:40
Alignment explanation
Indices: 95007871--95007960 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
95007861 ATGCTGGAAA
*
95007871 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
* * *
95007911 CTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGG
95007951 TTATATCCGG
1 TTATATCCGG
95007961 TTGTATTCCG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 4 0.10
40 38 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
Found at i:95016364 original size:40 final size:40
Alignment explanation
Indices: 95016298--95016441 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
95016288 CAATTGAATG
* * *
95016298 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
95016337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * * ****
95016377 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
95016417 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
95016442 TTCGTGCACG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 16 0.18
40 71 0.82
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:95016462 original size:40 final size:40
Alignment explanation
Indices: 95016335--95016464 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
95016325 ATGCTGGAAA
* *
95016335 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
95016375 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
95016415 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
95016455 TTATATCCGG
1 TTATATCCGG
95016465 TATTCCGAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:95024356 original size:40 final size:40
Alignment explanation
Indices: 95024229--95024358 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
95024219 ATGCTGGAAA
* *
95024229 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
95024269 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
95024309 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
95024349 TTATATCCGG
1 TTATATCCGG
95024359 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:95026425 original size:40 final size:40
Alignment explanation
Indices: 95026369--95026571 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
95026359 CGGGATTGAA
* * * *
95026369 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
95026409 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
95026449 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95026488 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
95026528 CC-GAAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
95026568 CCGG
1 CCGG
95026572 TTATCATCCA
Statistics
Matches: 149, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 42 0.28
40 106 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95026506 original size:79 final size:78
Alignment explanation
Indices: 95026369--95026568 Score: 276
Period size: 79 Copynumber: 2.5 Consensus size: 78
95026359 CGGGATTGAA
* * * *
95026369 CCGGATATAGCTACTCGCTCGAATACCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
95026434 CCTTCGGGACTTAGC
64 CCTTCGGGACTTAGC
*
95026449 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACCAATGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGC
95026514 CTTCGGGACTTAGC
65 CTTCGGGACTTAGC
* * *
95026528 CC-GAAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCC
95026569 CGGTTATCAT
Statistics
Matches: 109, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 3 0.03
79 73 0.67
80 33 0.30
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (78 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCC
TTCGGGACTTAGC
Found at i:95026566 original size:119 final size:119
Alignment explanation
Indices: 95026355--95026571 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 119
95026345 AAGCCAAGTA
* * *
95026355 CCTTCGGGATTGAACCGGATATAGCTACTCGCTCGAATACCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGATTGAACCGGATATAGCTACTCGCACCAATACCTTCGGGACATAGCCCGGAAATAGT
*
95026420 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
95026474 CCTTCGGGACTT-AGCCGGATATAG-TAACTCGCACCAATGCCTTCGGGACTTAGCCC-GAAACT
1 CCTTCGGGA-TTGAACCGGATATAGCT-ACTCGCACCAATACCTTCGGGACATAGCCCGGAAA-T
* *
95026536 AGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
95026572 TTATCATCCA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
118 4 0.05
119 80 0.93
120 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (119 bp):
CCTTCGGGATTGAACCGGATATAGCTACTCGCACCAATACCTTCGGGACATAGCCCGGAAATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:95032415 original size:27 final size:28
Alignment explanation
Indices: 95032359--95032428 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
95032349 AAATTTGTAC
95032359 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
95032387 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
95032414 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
95032429 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:95037255 original size:40 final size:40
Alignment explanation
Indices: 95037187--95037388 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
95037177 TTGGGATTAA
* * *
95037187 CCGGATATAGCT-ACTC-CTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
95037226 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95037266 CCGGATATAGTAACTCGCACAAATTCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
95037306 CC-GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
95037345 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
95037385 CCGG
1 CCGG
95037389 TTATCATCCA
Statistics
Matches: 151, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 53 0.35
40 97 0.64
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95037319 original size:79 final size:78
Alignment explanation
Indices: 95037187--95037387 Score: 289
Period size: 79 Copynumber: 2.5 Consensus size: 78
95037177 TTGGGATTAA
* *
95037187 CCGGATATAGCTACTC-CTCAAATACCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACAAATACCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
95037251 CCTTCGGGACTTAGC
64 CCTTCGGGACTTAGC
*
95037266 CCGGATATAGTAACTCGCACAAATTCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGC
1 CCGGATATAGT-ACTCGCACAAATACCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGC
95037331 CTTCGGGACTTAGC
65 CTTCGGGACTTAGC
* * *
95037345 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCG
1 CCGGATA-TAGT-ACTCGCACAAATACCTTCGGGACTTAGCCCG
95037388 GTTATCATCC
Statistics
Matches: 112, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
78 2 0.02
79 88 0.79
80 22 0.20
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
CCGGATATAGTACTCGCACAAATACCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCC
TTCGGGACTTAGC
Found at i:95057778 original size:39 final size:39
Alignment explanation
Indices: 95057724--95057968 Score: 282
Period size: 39 Copynumber: 6.5 Consensus size: 39
95057714 TAATGGAGAA
95057724 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
95057763 TTATATTCGGGC----T----AA-G---TCGTGCTGGTG
1 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95057790 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
95057829 TTATATCCGGGCTAAGCCCCGAAGGCATTTGTGCTGGTG
1 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
95057868 TTATA-TCTGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATTC-GGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
95057907 TTATATCCGGGCTAAGCCCCAAAGGCATTCGTGCTAGTA
1 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
95057946 TTATATTCGGGCTTAAAGTCCCG
1 TTATATTCGGGC-T-AAGTCCCG
95057969 CATGCTTTGT
Statistics
Matches: 178, Mismatches: 12, Indels: 30
0.81 0.05 0.14
Matches are distributed among these distances:
27 22 0.12
30 1 0.01
31 3 0.02
35 3 0.02
36 1 0.01
38 1 0.01
39 139 0.78
40 2 0.01
41 6 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:95057790 original size:27 final size:27
Alignment explanation
Indices: 95057752--95057807 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
95057742 CCGAAGGCAT
*
95057752 TCGTGCTGGTGTTATATTCGGGCTAAG
1 TCGTGCTGGTGTTATATCCGGGCTAAG
95057779 TCGTGCTGGTGTTATATCCGGGCTAAG
1 TCGTGCTGGTGTTATATCCGGGCTAAG
95057806 TC
1 TC
95057808 CCGAAGGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.18, G:0.32, T:0.36
Consensus pattern (27 bp):
TCGTGCTGGTGTTATATCCGGGCTAAG
Found at i:95071144 original size:29 final size:29
Alignment explanation
Indices: 95071102--95071160 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
95071092 CTTGATTAAA
95071102 TCTTATTTGAAATCGTGCATTAGAACTCC
1 TCTTATTTGAAATCGTGCATTAGAACTCC
95071131 TCTTATTTGAAATCGTGCATTAGAACTCC
1 TCTTATTTGAAATCGTGCATTAGAACTCC
95071160 T
1 T
95071161 TTGTTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (29 bp):
TCTTATTTGAAATCGTGCATTAGAACTCC
Found at i:95084869 original size:29 final size:29
Alignment explanation
Indices: 95084826--95084900 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
95084816 GGTTGAGAGA
* *
95084826 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
* *
95084855 ATGGCACTAACTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
95084884 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
95084901 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:95085211 original size:47 final size:47
Alignment explanation
Indices: 95085142--95085235 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
95085132 TTTATCGTGG
95085142 AATAGGTGAAAGTTCGTTTAGTTGTATGATTGTAACGAAAATAAAAT
1 AATAGGTGAAAGTTCGTTTAGTTGTATGATTGTAACGAAAATAAAAT
95085189 AATAGGTGAAAGTTCGTTTAGTTGTATGATTGTAACGAAAATAAAAT
1 AATAGGTGAAAGTTCGTTTAGTTGTATGATTGTAACGAAAATAAAAT
95085236 GATGTATGGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.34
Consensus pattern (47 bp):
AATAGGTGAAAGTTCGTTTAGTTGTATGATTGTAACGAAAATAAAAT
Found at i:95087084 original size:83 final size:83
Alignment explanation
Indices: 95086861--95087296 Score: 676
Period size: 83 Copynumber: 5.2 Consensus size: 83
95086851 TTCGATTTGT
* * * * * *
95086861 AAGGATGTCAAATCATTTTGAGTCTGCTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
95086926 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
95086944 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
95087009 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* * *
95087028 AAGGATGCCAAACCGTCTTGATTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
95087093 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
95087111 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
95087176 TTTGTTCTTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * * *
95087194 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATCTGAGAGT-TTAATCTGCTATTTCCTCG
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCAT-ATCTGCAATGTCCTCG
*
95087258 ATTTGTTCCTTGTAAACAC
65 ATTTGTTCCTTGTAAGCAC
* * *
95087277 AAGAATACCAAATCATCTTG
1 AAGGATGCCAAACCATCTTG
95087297 GATCTGCTTC
Statistics
Matches: 328, Mismatches: 23, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
82 1 0.00
83 250 0.76
84 77 0.23
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:95087431 original size:119 final size:119
Alignment explanation
Indices: 95087220--95087692 Score: 788
Period size: 119 Copynumber: 4.0 Consensus size: 119
95087210 CTTGAGTCTG
* ** * *
95087220 TTTGAGAACATCTGAGAGTTTAATCTGCTATTTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
* *
95087285 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATA
*
95087339 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
*
95087404 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATA
95087458 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
** *
95087523 CAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGT-TAGATCTGCTATA
95087577 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
**
95087642 CAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGCT
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGT-TAGATCTGCT
95087693 GTCTTCAATT
Statistics
Matches: 340, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
118 2 0.01
119 338 0.99
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:95096540 original size:30 final size:30
Alignment explanation
Indices: 95096506--95096568 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
95096496 GTAATTAGTA
* *
95096506 AATATATAATATATG-TGAAAATATAATAAT
1 AATATAAAATAAATGATGAAAA-ATAATAAT
*
95096536 AATATAAAATAAATGATGTAAAATAATAAT
1 AATATAAAATAAATGATGAAAAATAATAAT
95096566 AAT
1 AAT
95096569 TTGAGGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (30 bp):
AATATAAAATAAATGATGAAAAATAATAAT
Found at i:95098328 original size:21 final size:20
Alignment explanation
Indices: 95098299--95098337 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95098289 GAAACCCAAA
95098299 CATATCCAACCGTATACACCCC
1 CATATCCAACC-T-TACACCCC
95098321 CATA-CCAACCTTACACC
1 CATATCCAACCTTACACC
95098338 GTGTGGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 6 0.35
22 4 0.24
ACGTcount: A:0.33, C:0.46, G:0.03, T:0.18
Consensus pattern (20 bp):
CATATCCAACCTTACACCCC
Found at i:95098430 original size:27 final size:27
Alignment explanation
Indices: 95098399--95098459 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
95098389 AGCATGGCTG
95098399 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
95098426 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
95098453 CCAGAAC
1 CCAGAAC
95098460 GCTTCTTCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:95100113 original size:26 final size:26
Alignment explanation
Indices: 95100077--95100186 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
95100067 CATGAAATTC
95100077 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95100103 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
95100129 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
95100155 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
95100181 TTATCA
1 TTATCA
95100187 CTTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95104155 original size:34 final size:34
Alignment explanation
Indices: 95104116--95104256 Score: 142
Period size: 34 Copynumber: 4.2 Consensus size: 34
95104106 AATTGATTTA
* *
95104116 TTATAAGCACATTATTTGTTACCGTATCGATCTG
1 TTATAAGCATATTAATTGTTACCGTATCGATCTG
* * * *
95104150 CTATAAGCATATTAAGTGTTA-C-TATTGATCTA
1 TTATAAGCATATTAATTGTTACCGTATCGATCTG
* * ** *
95104182 TTTTAAGTATATTAATTACTACCGTATCAATCTG
1 TTATAAGCATATTAATTGTTACCGTATCGATCTG
* * *
95104216 TTATAAGCATATTAATTGTTATCGTATTGATCTA
1 TTATAAGCATATTAATTGTTACCGTATCGATCTG
95104250 TTATAAG
1 TTATAAG
95104257 TATGTCATAT
Statistics
Matches: 82, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
32 23 0.28
33 2 0.02
34 57 0.70
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (34 bp):
TTATAAGCATATTAATTGTTACCGTATCGATCTG
Found at i:95107118 original size:2 final size:2
Alignment explanation
Indices: 95107111--95107154 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
95107101 ACACTTAATC
95107111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95107153 AT
1 AT
95107155 GTTTTAGGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95116169 original size:15 final size:15
Alignment explanation
Indices: 95116153--95116208 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
95116143 TTTTTTTCTT
*
95116153 TTTCTTTTATTATTT
1 TTTCTTTTATTATTC
95116168 TTTCTTTTATT-TTC
1 TTTCTTTTATTATTC
*
95116182 TTT-TATTATTTATTAC
1 TTTCTTTTA-TTATT-C
95116198 TTTCTTTTATT
1 TTTCTTTTATT
95116209 TTATTATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 4 0.12
14 7 0.21
15 13 0.38
16 6 0.18
17 4 0.12
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTCTTTTATTATTC
Found at i:95116180 original size:10 final size:10
Alignment explanation
Indices: 95116167--95116210 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
95116157 TTTTATTATT
95116167 TTTTCTTTTA
1 TTTTCTTTTA
95116177 TTTTCTTTTA
1 TTTTCTTTTA
*
95116187 TTATT-TATTA
1 TT-TTCTTTTA
*
95116197 CTTTCTTTTA
1 TTTTCTTTTA
95116207 TTTT
1 TTTT
95116211 ATTATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 2 0.07
10 24 0.86
11 2 0.07
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:95116186 original size:25 final size:25
Alignment explanation
Indices: 95116152--95116230 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
95116142 ATTTTTTTCT
*
95116152 TTTTCTTTTATTATTT-TTTCTTTTA
1 TTTTCTTTTATTATTTATTAC-TTTA
*
95116177 TTTTCTTTTATTATTTATTACTTTC
1 TTTTCTTTTATTATTTATTACTTTA
*
95116202 TTTTATTTTATTATTTATTACTTTA
1 TTTTCTTTTATTATTTATTACTTTA
95116227 TTTT
1 TTTT
95116231 TTTGGATATT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 46 0.94
26 3 0.06
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTCTTTTATTATTTATTACTTTA
Found at i:95120151 original size:57 final size:58
Alignment explanation
Indices: 95120058--95120197 Score: 203
Period size: 57 Copynumber: 2.4 Consensus size: 58
95120048 TAACATATAA
* ** *
95120058 CAGGGTTACCAGTCCAGGCTAAATCCTTTTTGTAACATATGCTC-AGAAGAGCTCA-AT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAA-AGATCATAT
* *
95120115 TAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAAAGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAAAGATCATAT
95120173 CAGGATTACCAGTCCAGGCTAAATC
1 CAGGATTACCAGTCCAGGCTAAATC
95120198 ATGTTAGCAA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 44 0.59
58 30 0.41
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (58 bp):
CAGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAAAGATCATAT
Found at i:95122473 original size:23 final size:22
Alignment explanation
Indices: 95122443--95122486 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
95122433 TATCCAATGT
*
95122443 GTGGTGATAGAGTCCACTTATAG
1 GTGGTGATAAAGTCC-CTTATAG
95122466 GTGGTGATAAAGTCCCTTATA
1 GTGGTGATAAAGTCCCTTATA
95122487 TGTTTCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (22 bp):
GTGGTGATAAAGTCCCTTATAG
Found at i:95122570 original size:17 final size:17
Alignment explanation
Indices: 95122550--95122598 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
95122540 CGATGTGGTA
*
95122550 TGAATGAATTATTATAT
1 TGAATGAACTATTATAT
95122567 TGAATGAACTATTATAT
1 TGAATGAACTATTATAT
*
95122584 TGCATGAACTATTAT
1 TGAATGAACTATTAT
95122599 TTCATCTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (17 bp):
TGAATGAACTATTATAT
Found at i:95122608 original size:17 final size:16
Alignment explanation
Indices: 95122553--95122617 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 16
95122543 TGTGGTATGA
* *
95122553 ATGAATTATTATATTGA
1 ATGAACTATTAT-TTGC
95122570 ATGAACTATTATATTGC
1 ATGAACTATTAT-TTGC
95122587 ATGAACTATTATTT-C
1 ATGAACTATTATTTGC
95122602 ATCTGAACTATTATTT
1 A--TGAACTATTATTT
95122618 TATGCGAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.05
16 2 0.05
17 40 0.91
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.46
Consensus pattern (16 bp):
ATGAACTATTATTTGC
Found at i:95129229 original size:35 final size:32
Alignment explanation
Indices: 95129095--95129281 Score: 140
Period size: 33 Copynumber: 5.6 Consensus size: 32
95129085 AAGACAAATT
* *
95129095 GCATTCTTATGTAAGACCATAGTTGGGCTATG
1 GCATTCTGATGTAAGACCATAGCTGGGCTATG
* *
95129127 GCATTCTGATGATAAGACCATAACTGGGTTATG
1 GCATTCTGATG-TAAGACCATAGCTGGGCTATG
* * * * * * * *
95129160 ACACTATGGACGTAAGACCATGGTTGGACCATG
1 GCATTCT-GATGTAAGACCATAGCTGGGCTATG
* *
95129193 GCAGTGTTTATATGTAAGACCATAGCTGGGCTATG
1 GCA-T-TCT-GATGTAAGACCATAGCTGGGCTATG
* *
95129228 GCATTCTGATGATAAGACCATAACTGGGTTATG
1 GCATTCTGATG-TAAGACCATAGCTGGGCTATG
* * *
95129261 GCACTATGGACGTAAGACCAT
1 GCATTCT-GATGTAAGACCAT
95129282 GGTTGGACCA
Statistics
Matches: 118, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
32 13 0.11
33 74 0.63
34 7 0.06
35 24 0.20
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (32 bp):
GCATTCTGATGTAAGACCATAGCTGGGCTATG
Found at i:95129277 original size:101 final size:101
Alignment explanation
Indices: 95129102--95129331 Score: 406
Period size: 101 Copynumber: 2.3 Consensus size: 101
95129092 ATTGCATTCT
95129102 TATGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACTAT
1 TATGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACTAT
* *
95129167 GGACGTAAGACCATGGTTGGACCATGGCAGTGTTTA
66 GGACGTAAGACCATGGTTGGACCATGACAATGTTTA
* *
95129203 TATGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTAT
1 TATGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACTAT
95129268 GGACGTAAGACCATGGTTGGACCATGACAATGTTTA
66 GGACGTAAGACCATGGTTGGACCATGACAATGTTTA
* *
95129304 TATGTAAGGCCATAGTTGGACTATGGCA
1 TATGTAAGACCATAGTTGGGCTATGGCA
95129332 CAAAAGAAAC
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 122 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (101 bp):
TATGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACTAT
GGACGTAAGACCATGGTTGGACCATGACAATGTTTA
Found at i:95129497 original size:2 final size:2
Alignment explanation
Indices: 95129490--95129519 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
95129480 CTAAATGATT
95129490 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95129520 AGTTGAGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95132350 original size:57 final size:57
Alignment explanation
Indices: 95132248--95132366 Score: 168
Period size: 59 Copynumber: 2.1 Consensus size: 57
95132238 GGATTGATTT
* *
95132248 TTTTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTG
1 TTTTAAATATATTTGTACAAACTATTTTTATA-TGTTTCATTTAAT-AAATAGAAGTTC
* * *
95132307 TTTTAAATATTTTTGTACAAATTATTTTTATA-GTTTCATTTAATAAATAGACGTTC
1 TTTTAAATATATTTGTACAAACTATTTTTATATGTTTCATTTAATAAATAGAAGTTC
95132363 TTTT
1 TTTT
95132367 GAACAAGACA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
56 14 0.25
57 12 0.22
59 29 0.53
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.53
Consensus pattern (57 bp):
TTTTAAATATATTTGTACAAACTATTTTTATATGTTTCATTTAATAAATAGAAGTTC
Found at i:95134533 original size:46 final size:46
Alignment explanation
Indices: 95134466--95134557 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
95134456 GATAGATCAA
* *
95134466 CATTATGCATATAGGCTGGAGGCGAGTACGCCGTGAATCGTGAATT
1 CATTATGCATATAAGCTGGAGGCGAGTACGCCATGAATCGTGAATT
95134512 CATTATGCATATAAGCTGGAGGCGAGTACGCCATGAATCGTGAATT
1 CATTATGCATATAAGCTGGAGGCGAGTACGCCATGAATCGTGAATT
95134558 TTCTTCTTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (46 bp):
CATTATGCATATAAGCTGGAGGCGAGTACGCCATGAATCGTGAATT
Found at i:95135996 original size:28 final size:28
Alignment explanation
Indices: 95135936--95135996 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
95135926 TAAAACAAAT
95135936 CCTAATTTATTTTTAAAAAACCCTAAAC
1 CCTAATTTATTTTTAAAAAACCCTAAAC
* *
95135964 TCTAATTTATTTTTTCAAAAACCCT-AAC
1 CCTAATTTA-TTTTTAAAAAACCCTAAAC
95135992 CCTAA
1 CCTAA
95135997 CCTTAAGTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 15 0.52
29 14 0.48
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.38
Consensus pattern (28 bp):
CCTAATTTATTTTTAAAAAACCCTAAAC
Found at i:95143676 original size:13 final size:13
Alignment explanation
Indices: 95143658--95143682 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95143648 AGGCCGTGTG
95143658 AAGGACACGGGCC
1 AAGGACACGGGCC
95143671 AAGGACACGGGC
1 AAGGACACGGGC
95143683 GTGTGCTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:95153648 original size:2 final size:2
Alignment explanation
Indices: 95153641--95153666 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95153631 CCGAATGAAC
95153641 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95153667 TTCATCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95161702 original size:6 final size:6
Alignment explanation
Indices: 95161691--95161729 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
95161681 TTTTGAAGAC
* *
95161691 TTTTTA TTTTTA TTTTTA TTTTTA CTTTTA TCTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
95161730 ATCTTTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:95161737 original size:18 final size:19
Alignment explanation
Indices: 95161697--95161737 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
95161687 AGACTTTTTA
* *
95161697 TTTTTATTTTTATTTTTAC
1 TTTTTATCTTTATTTATAC
95161716 -TTTTATCTTTATTTAT-C
1 TTTTTATCTTTATTTATAC
95161733 TTTTT
1 TTTTT
95161738 CAATTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTATCTTTATTTATAC
Found at i:95175857 original size:26 final size:28
Alignment explanation
Indices: 95175809--95175862 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
95175799 ATAATCTAAA
95175809 ACAATTTCATACAAATTGCTTC-TATTT
1 ACAATTTCATACAAATTGCTTCTTATTT
* * *
95175836 ACAATTT-ATTCAATTTGGTTCTTATTT
1 ACAATTTCATACAAATTGCTTCTTATTT
95175863 TTCAATTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.50
Consensus pattern (28 bp):
ACAATTTCATACAAATTGCTTCTTATTT
Found at i:95182461 original size:2 final size:2
Alignment explanation
Indices: 95182454--95182486 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
95182444 ACATACATAC
95182454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95182487 ATTCTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95182587 original size:2 final size:2
Alignment explanation
Indices: 95182580--95182615 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
95182570 ACCACAATTC
95182580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95182616 TCTTTGAGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95187900 original size:26 final size:29
Alignment explanation
Indices: 95187856--95187909 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 29
95187846 AATTTATTGC
*
95187856 TTATAATAATAATATAAAAATATAATATT
1 TTATAATAATAATATAAAAATAAAATATT
95187885 TTATAA-AATAA-A-AAAAATAAAATAT
1 TTATAATAATAATATAAAAATAAAATAT
95187910 ATAAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 12 0.50
27 1 0.04
28 5 0.21
29 6 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
TTATAATAATAATATAAAAATAAAATATT
Found at i:95189387 original size:22 final size:22
Alignment explanation
Indices: 95189359--95189402 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
95189349 CTTGAATATC
95189359 CAATTTATTCAACACATTTAAT
1 CAATTTATTCAACACATTTAAT
95189381 CAATTTATTCAACACATTTAAT
1 CAATTTATTCAACACATTTAAT
95189403 AATACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (22 bp):
CAATTTATTCAACACATTTAAT
Found at i:95190103 original size:20 final size:20
Alignment explanation
Indices: 95190078--95190115 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
95190068 TCGGAAGTGA
*
95190078 CAACACCTAACAAATATTGG
1 CAACACCCAACAAATATTGG
95190098 CAACACCCAACAAATATT
1 CAACACCCAACAAATATT
95190116 TTTTCTTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.29, G:0.05, T:0.18
Consensus pattern (20 bp):
CAACACCCAACAAATATTGG
Found at i:95191935 original size:20 final size:20
Alignment explanation
Indices: 95191912--95191950 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95191902 ATAGTATAAT
* *
95191912 AAAAAGGAAAATAAAAAAAG
1 AAAAAAGAAAAGAAAAAAAG
95191932 AAAAAAGAAAAGAAAAAAA
1 AAAAAAGAAAAGAAAAAAA
95191951 TTTTTACCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAGAAAAAAAG
Found at i:95191942 original size:12 final size:12
Alignment explanation
Indices: 95191912--95191950 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
95191902 ATAGTATAAT
*
95191912 AAAAAGGAAAATA
1 AAAAAAGAAAA-A
95191925 AAAAAAGAAAAA
1 AAAAAAGAAAAA
*
95191937 AGAAAAGAAAAA
1 AAAAAAGAAAAA
95191949 AA
1 AA
95191951 TTTTTACCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (12 bp):
AAAAAAGAAAAA
Found at i:95192525 original size:24 final size:26
Alignment explanation
Indices: 95192480--95192527 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
95192470 TATGTTATGA
*
95192480 ATATATTTTTTATATATGTTATATAC
1 ATATATTTTTTATATATATTATATAC
95192506 ATATATTTTTT-TA-ATATTATAT
1 ATATATTTTTTATATATATTATAT
95192528 TTTTTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 2 0.10
26 11 0.52
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
ATATATTTTTTATATATATTATATAC
Found at i:95192528 original size:16 final size:16
Alignment explanation
Indices: 95192507--95192541 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
95192497 GTTATATACA
95192507 TATATTTTTT-TAATAT
1 TATATTTTTTAT-ATAT
95192523 TATATTTTTTATATAT
1 TATATTTTTTATATAT
95192539 TAT
1 TAT
95192542 TATGTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATATTTTTTATATAT
Found at i:95192595 original size:24 final size:23
Alignment explanation
Indices: 95192444--95192608 Score: 105
Period size: 24 Copynumber: 7.3 Consensus size: 23
95192434 TTCTAATACG
* * *
95192444 TATATATTATGTAAATATTTTAA
1 TATATTTTATGTATATATTTTTA
* *
95192467 TACTATGTTATGAATATATTTTTTA
1 TA-TATTTTATGTATATA-TTTTTA
**
95192492 TATATGTTATATACATATATTTTT-
1 TATAT-TT-TATGTATATATTTTTA
*
95192516 T-TA--ATAT-TATAT-TTTTTA
1 TATATTTTATGTATATATTTTTA
*
95192534 TATATTATTATGTATATATTTTAA
1 TATATT-TTATGTATATATTTTTA
*
95192558 TATCA-TTAAT-TATATATTTTTA
1 TAT-ATTTTATGTATATATTTTTA
*
95192580 TACTATTTTATGTATATATTTCTA
1 TA-TATTTTATGTATATATTTTTA
95192604 -ATATT
1 TATATT
95192609 ATATATTGAA
Statistics
Matches: 112, Mismatches: 15, Indels: 31
0.71 0.09 0.20
Matches are distributed among these distances:
17 5 0.04
18 5 0.04
19 5 0.04
22 21 0.19
23 18 0.16
24 36 0.32
25 14 0.12
26 8 0.07
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATTTTATGTATATATTTTTA
Found at i:95192608 original size:22 final size:22
Alignment explanation
Indices: 95192520--95192639 Score: 95
Period size: 23 Copynumber: 5.3 Consensus size: 22
95192510 ATTTTTTTAA
*
95192520 TATTATAT-TTTTTATATATTAT
1 TATTATATATTTCTA-ATATTAT
*
95192542 TATGTATATATTT-TAATATCAT
1 TAT-TATATATTTCTAATATTAT
*
95192564 TAATTATATATTTTTATACTATT-T
1 T-ATTATATATTTCTA-A-TATTAT
95192588 TATGTATATATTTCTAATATTAT
1 TAT-TATATATTTCTAATATTAT
**
95192611 ATATTGA-ATATTTCTAATACCAT
1 -TATT-ATATATTTCTAATATTAT
95192634 TATTAT
1 TATTAT
95192640 TTATATATAT
Statistics
Matches: 82, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
21 1 0.01
22 27 0.33
23 30 0.37
24 21 0.26
25 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (22 bp):
TATTATATATTTCTAATATTAT
Found at i:95192737 original size:22 final size:22
Alignment explanation
Indices: 95192712--95192999 Score: 76
Period size: 24 Copynumber: 12.9 Consensus size: 22
95192702 ATTTCTAATG
*
95192712 TATATATA-TATCGTATATGTTT
1 TATATATATTAT-GTATATATTT
*
95192734 TATAAATATTATGTATATA-TT
1 TATATATATTATGTATATATTT
95192755 T-TA-ATATTA-GTTATATATTT
1 TATATATATTATG-TATATATTT
*
95192775 TTTATACTATTTCATGTATATATTT
1 TATATA-TA-TT-ATGTATATATTT
** *
95192800 T-TATATTATCCT-TAT-TATTAG
1 TATATA-TATTATGTATATATT-T
***
95192821 TAT-TAATATTA-GTAT-GCGTT
1 TATAT-ATATTATGTATATATTT
95192841 T-TAT-TA-TATGTATATATCTT
1 TATATATATTATGTATATAT-TT
95192861 TA-ATATATATATGTATATA-TT
1 TATATATAT-TATGTATATATTT
*
95192882 TATGTAATATTAT-TAATAGTTATTT
1 TATAT-ATATTATGT-ATA--TATTT
* *
95192907 TTTA-ACATTAT-TAT-TATTT
1 TATATATATTATGTATATATTT
*
95192926 CTAATATGTATATACTATGTAAATATTT
1 -T-ATA--TATAT--TATGTATATATTT
* *
95192954 TAATACTATATTTTGTATACATTT
1 T-ATA-TATATTATGTATATATTT
*
95192978 TACATATATATTACGTATATAT
1 T--ATATATATTATGTATATAT
95193000 GTCTTTTAAT
Statistics
Matches: 199, Mismatches: 30, Indels: 72
0.66 0.10 0.24
Matches are distributed among these distances:
17 2 0.01
18 7 0.04
19 18 0.09
20 17 0.09
21 26 0.13
22 26 0.13
23 27 0.14
24 37 0.19
25 18 0.09
26 9 0.05
27 7 0.04
28 5 0.03
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.55
Consensus pattern (22 bp):
TATATATATTATGTATATATTT
Found at i:95192762 original size:19 final size:19
Alignment explanation
Indices: 95192738--95192808 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 19
95192728 ATGTTTTATA
95192738 AATATTATGTATATATTTT
1 AATATTATGTATATATTTT
95192757 AATATTA-GTTATATATTTTTT
1 AATATTATG-TATATA--TTTT
95192778 ATACTATTTCATGTATATATTTT
1 A-A-TA-TT-ATGTATATATTTT
*
95192801 TATATTAT
1 AATATTAT
95192809 CCTTATTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
18 1 0.02
19 15 0.35
20 2 0.05
21 7 0.16
22 2 0.05
23 6 0.14
24 2 0.05
25 7 0.16
26 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (19 bp):
AATATTATGTATATATTTT
Found at i:95193110 original size:23 final size:22
Alignment explanation
Indices: 95193033--95193102 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
95193023 ATATCATATA
*
95193033 TATATTTCGAATACTATATTATAT
1 TATATTT--AATACTATATTATGT
* * * *
95193057 TTTTTTTACATATTATCTTATGT
1 TATATTTA-ATACTATATTATGT
95193080 CTATATTTAATACTATATTATGT
1 -TATATTTAATACTATATTATGT
95193103 ATGTATTTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
22 1 0.03
23 23 0.66
24 11 0.31
ACGTcount: A:0.31, C:0.09, G:0.04, T:0.56
Consensus pattern (22 bp):
TATATTTAATACTATATTATGT
Found at i:95193149 original size:20 final size:21
Alignment explanation
Indices: 95193124--95193167 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
95193114 AACGCCATAT
*
95193124 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
95193144 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
95193165 TAT
1 TAT
95193168 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:95195800 original size:30 final size:30
Alignment explanation
Indices: 95195764--95195826 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
95195754 AAATAGAGCG
95195764 CACACCTTTCCACATGTTCTCAAAAACATT
1 CACACCTTTCCACATGTTCTCAAAAACATT
95195794 CACACCTTTCCACATGTTCTCAAAAACATT
1 CACACCTTTCCACATGTTCTCAAAAACATT
95195824 CAC
1 CAC
95195827 CCCATTAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (30 bp):
CACACCTTTCCACATGTTCTCAAAAACATT
Found at i:95205763 original size:79 final size:79
Alignment explanation
Indices: 95205489--95205776 Score: 446
Period size: 78 Copynumber: 3.7 Consensus size: 79
95205479 TTCTATTTTC
* *
95205489 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-A----TTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCTTTTCAA
*
95205549 TTTCTG-TCTTTAAA
66 TTTCTGCT-TTTCAA
* *
95205563 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTCTTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCTTTTCAA
*
95205628 TTTCTTCTTTTC-A
66 TTTCTGCTTTTCAA
* *
95205641 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTCTTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCTTTTCAA
95205706 TTTCTGCTTTTCAA
66 TTTCTGCTTTTCAA
95205720 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
95205777 TCAATTTCTG
Statistics
Matches: 196, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
74 48 0.24
75 1 0.01
78 75 0.38
79 71 0.36
80 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (79 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCTTTTCAA
TTTCTGCTTTTCAA
Found at i:95205770 original size:157 final size:154
Alignment explanation
Indices: 95205477--95205848 Score: 495
Period size: 157 Copynumber: 2.4 Consensus size: 154
95205467 TGATGTTTTT
** *
95205477 ATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
* *
95205541 ATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC
66 ATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
95205606 ACGCTGAGG-T-ATTTC-TTTTCA
131 ACGCTGAGGTTAATTTCTTTTTCA
*
95205627 ATTTCT-TCTTTTCAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 ATTTCTAT-TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
*
95205691 GGTATTTCTTTTCAATTTCTG-CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
64 GG-A----TTTTCAATTTCTGTC-TTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
95205755 CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTTCA
123 CTCAGGACACGCTGAGG----TT-AATTTC---TTTTTCA
95205795 ATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 ATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
95205849 TCACATGCCG
Statistics
Matches: 193, Mismatches: 8, Indels: 25
0.85 0.04 0.11
Matches are distributed among these distances:
150 6 0.03
151 5 0.03
152 48 0.25
153 1 0.01
156 1 0.01
157 68 0.35
162 1 0.01
164 5 0.03
167 40 0.21
168 17 0.09
169 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (154 bp):
ATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
ATTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTTAATTTCTTTTTCA
Found at i:95205794 original size:15 final size:15
Alignment explanation
Indices: 95205774--95205806 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
95205764 CGCTGAGGTA
*
95205774 TTTTCAATTTCTGTT
1 TTTTCAATTTCTATT
95205789 TTTTCAATTTCTATT
1 TTTTCAATTTCTATT
95205804 TTT
1 TTT
95205807 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTCTATT
Found at i:95205879 original size:88 final size:89
Alignment explanation
Indices: 95205699--95205894 Score: 274
Period size: 88 Copynumber: 2.2 Consensus size: 89
95205689 GAGGTATTTC
**
95205699 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
95205764 CGCTGAGGTATTTTCAATTTCTGTT
65 CGCCGAGGTATTTTCAATTTCTGTT
*
95205789 TTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
*
95205853 ATGCCGAGGT-TTTTCAAATTT-T-TT
64 ACGCCGAGGTATTTTC-AATTTCTGTT
*
95205877 TTTTCAAATTCTATTTTT
1 TTTTCAATTTCTATTTTT
95205895 AATTTCTGTT
Statistics
Matches: 97, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
88 59 0.61
89 6 0.06
90 32 0.33
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (89 bp):
TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCCGAGGTATTTTCAATTTCTGTT
Found at i:95205893 original size:14 final size:14
Alignment explanation
Indices: 95205862--95205911 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
95205852 CATGCCGAGG
* *
95205862 TTTTTCAAATTTTT
1 TTTTTCAAATTCTA
95205876 TTTTTCAAATTCTA
1 TTTTTCAAATTCTA
* *
95205890 TTTTT-AATTTCTG
1 TTTTTCAAATTCTA
95205903 TTTTTCAAA
1 TTTTTCAAA
95205912 AATCAAGTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTTTCAAATTCTA
Found at i:95205900 original size:101 final size:102
Alignment explanation
Indices: 95205774--95206054 Score: 393
Period size: 101 Copynumber: 2.7 Consensus size: 102
95205764 CGCTGAGGTA
* *
95205774 TTTTCAATTTCTGTTTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAAATTCT-ATTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
95205839 GAGCCTCGGGTCACATGCCGAGGT-TTTTCAAATTTTTT
64 GAGCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGT
* *
95205877 TTTTCAAATTCTATTTTTAATTTCTGTTTTTCAAAAATCAAGTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAAATTCTATTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
95205942 GCCTCGGGTCACATACTGAGGTATTTTCAAAATCTGT
66 GCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGT
* * * *
95205979 TTTTCAAATTCTATTTTTAATTTCTTTTTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGT
1 TTTTCAAATTCTATTTTTAATTTC--TATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGT
95206044 TGAGCCTCGGG
63 TGAGCCTCGGG
95206055 ACACGCTGAG
Statistics
Matches: 160, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
101 65 0.41
102 40 0.25
103 11 0.07
104 7 0.04
105 37 0.23
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (102 bp):
TTTTCAAATTCTATTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGT
Found at i:95206118 original size:79 final size:83
Alignment explanation
Indices: 95206008--95206305 Score: 279
Period size: 88 Copynumber: 3.5 Consensus size: 83
95205998 ATTTCTTTTT
* *
95206008 TTTTCAAAAAAA-CAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTC
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTC
95206072 -TTT-T-CAATTTC-TAC
66 ATTTCTGCAATTTCATAC
*
95206086 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTT
*** *
95206151 CAATTTCTGTTTTTTCAATTTC
65 C-ATTTCTGCAATTTC-A-TAC
* ** * *
95206173 TGTTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTAT
1 TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTA-
* * *
95206238 TTTCAAATTCTGTTTTTAATTTC-TAT
62 TTTC-ATTTCTG----CAATTTCATAC
*
95206264 TTTTC--AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
95206306 TGGGTCACAT
Statistics
Matches: 184, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
78 12 0.07
79 45 0.24
80 4 0.02
82 3 0.02
83 1 0.01
84 4 0.02
87 6 0.03
88 76 0.41
90 23 0.12
91 5 0.03
94 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (83 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTC
ATTTCTGCAATTTCATAC
Found at i:95206167 original size:15 final size:15
Alignment explanation
Indices: 95206147--95206176 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95206137 CGCTGAGGTA
95206147 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
95206162 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
95206177 CTTCAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (15 bp):
TTTTCAATTTCTGTT
Found at i:95206181 original size:14 final size:15
Alignment explanation
Indices: 95206149--95206182 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
95206139 CTGAGGTATT
*
95206149 TTCAATTTCTGTTTT
1 TTCAATTTCTGTTTC
95206164 TTCAATTTCTG-TTC
1 TTCAATTTCTGTTTC
95206178 TTCAA
1 TTCAA
95206183 AAATCAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (15 bp):
TTCAATTTCTGTTTC
Found at i:95206185 original size:90 final size:87
Alignment explanation
Indices: 95206093--95206773 Score: 445
Period size: 88 Copynumber: 7.7 Consensus size: 87
95206083 TACTTTTCAA
* * * *
95206093 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGTATTTTCAAATT
95206157 CTGTTTTTTCAATTTCTGTTCTTC
66 CTGTTTTTT-AATTTCTGTT-TTC
95206181 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATTTTCAAAT
*
95206246 TCTG-TTTTTAATTTCTATTTTTC
65 TCTGTTTTTTAATTTCT-GTTTTC
* *
95206269 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATTTTC-AAA
* *
95206334 TT-TGTTTTTTAAATTCTGTTTTT
64 TTCTGTTTTTTAATTTCTGTTTTC
*** ** * *** * * * *
95206357 AATTTCTGTTTTTCAA-AAAAACAACGCATATTGTGAAAAG-TGAG--TTGAGC-C-T--CG-GG
1 AA-------AAATCAACTCATATTGCG-AGA-GGTG---AGTTGAGCCTCGGGCACATGCCGAGG
* ** * * * * *
95206413 ACATGCTGAGGTATT-T-CTTTTCAATTTTTGCTTTTC
54 -TATTTTCA--AATTCTGTTTTTTAATTTCTG-TTTTC
* ** * ***
95206449 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG---C--G-AGA-GGTGAGTTGAGCCTCAGG
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGT-ATTTTCA--
** *
95206507 ACACGCTGAGGTATTTTCAATTTCTGTTATTC
62 A-ATTCT---GT-TTTTTAATTTCTGTT-TTC
*
95206539 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATTTTCAAAT
95206604 TCTG-TTTTTAATTTCTGTTTTTC
65 TCTGTTTTTTAATTTCTG-TTTTC
*
95206627 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAGGTATTTTCAAAT
95206692 TCTGTTTTTTAATTTCTGTTTATC
65 TCTGTTTTTTAATTTCTGTTT-TC
* * * * *
95206716 AAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGG-ACACGCTGAGGTATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGTATTT
95206774 CTTTTCAATT
Statistics
Matches: 467, Mismatches: 76, Indels: 100
0.73 0.12 0.16
Matches are distributed among these distances:
80 1 0.00
82 3 0.01
83 11 0.02
84 1 0.00
85 4 0.01
86 6 0.01
87 4 0.01
88 216 0.46
89 75 0.16
90 79 0.17
91 15 0.03
92 9 0.02
93 6 0.01
94 7 0.01
95 6 0.01
96 13 0.03
97 5 0.01
98 4 0.01
99 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACATGCCGAGGTATTTTCAAATT
CTGTTTTTTAATTTCTGTTTTC
Found at i:95206347 original size:13 final size:14
Alignment explanation
Indices: 95206331--95206369 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
95206321 GGTATTTTCA
95206331 AAATT-TGTTTTTT
1 AAATTCTGTTTTTT
95206344 AAATTCTG-TTTTT
1 AAATTCTGTTTTTT
*
95206357 AATTTCTGTTTTT
1 AAATTCTGTTTTT
95206370 CAAAAAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.67
Consensus pattern (14 bp):
AAATTCTGTTTTTT
Found at i:95206363 original size:102 final size:101
Alignment explanation
Indices: 95206237--95206428 Score: 278
Period size: 103 Copynumber: 1.9 Consensus size: 101
95206227 TGCCGAGGTA
* * * *
95206237 TTTTCAAATTCTGTTTTTAATTTCTATTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAAATTCTGTTTTTAATTTCTATTTTTCAAAAAAACAACGCATATTGCGAAAAGTGAGTTG
*
95206301 AGCCTTGGGTCACATGCCGAGGTATTTTCAAAATTTGT
66 AGCCTCGGG--ACATGCCGAGGTATTTTCAAAATTTGT
* * *
95206339 TTTTTAAATTCTGTTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAAAAGTGAGTTG
1 TTTTCAAATTCTGTTTTTAATTTCTATTTTTCAAAAAAACAACGCATATTGCGAAAAGTGAGTTG
*
95206404 AGCCTCGGGACATGCTGAGGTATTT
66 AGCCTCGGGACATGCCGAGGTATTT
95206429 CTTTTCAATT
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 15 0.19
102 30 0.38
103 35 0.44
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (101 bp):
TTTTCAAATTCTGTTTTTAATTTCTATTTTTCAAAAAAACAACGCATATTGCGAAAAGTGAGTTG
AGCCTCGGGACATGCCGAGGTATTTTCAAAATTTGT
Found at i:95206488 original size:16 final size:16
Alignment explanation
Indices: 95206467--95206500 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
95206457 AACTCATATT
95206467 GCGAGAGGTGAGTTGA
1 GCGAGAGGTGAGTTGA
95206483 GCGAGAGGTGAGTTGA
1 GCGAGAGGTGAGTTGA
95206499 GC
1 GC
95206501 CTCAGGACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.09, G:0.50, T:0.18
Consensus pattern (16 bp):
GCGAGAGGTGAGTTGA
Found at i:95206550 original size:358 final size:357
Alignment explanation
Indices: 95205621--95207167 Score: 2011
Period size: 358 Copynumber: 4.4 Consensus size: 357
95205611 GAGGTATTTC
* ** * *
95205621 TTTTCAATTTCT-TCTTTTCAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTTTAATTTCTGT-TTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACA
95205685 CGCTGAGGTATTTCTTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
65 CGCTGAGGTATTTCTTTTCAATTTCTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *** * *** * *
95205750 TGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTTCAATTTCTATTTTTCAAAAATC
129 TGAGCCACAGGACACGCTGAGCTATGGACAACTGAGGTATTTTCAATTTCTATTCTTCAAAAATC
95205815 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTTTTTCAAATTTTTTTTT
194 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGG----T---A------TTT
*
95205880 TCAAATTCTATTTTTAATTTCTGTTTTTCAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCC
246 TCAAATTCTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * *
95205945 TCGGGTCACATACTGAGGTATTTTCAAAATCTGTTTTTCAAATTCTA
311 TCGGGTCACATGCCGAGGTATTTTCAAAATTTGTTTTTCAAATTCTG
*
95205992 TTTTTAATTTCTTTTTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTTAATTTC--TGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGAC
*
95206057 ACGCTGAGGTATTTCTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
64 ACGCTGAGGTATTTCTTTTCAATTTCTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
* * *** * *** * *
95206122 TTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTTCAATTTCTGTTCTTCAAAAAT
128 TTGAGCCACAGGACACGCTGAGCTATGGACAACTGAGGTATTTTCAATTTCTATTCTTCAAAAAT
*
95206187 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTT
193 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTATT
* * *
95206252 TTTAATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATG
258 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
95206317 CCGAGGTATTTTCAAAATTTGTTTTTTAAATTCTG
323 CCGAGGTATTTTCAAAATTTGTTTTTCAAATTCTG
* * *
95206352 TTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAAAAGTGAGTTGAGCCTCGGGACAT
1 TTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACAC
*
95206417 GCTGAGGTATTTCTTTTCAATTTTTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
66 GCTGAGGTATTTCTTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * ** * * * *
95206482 AGCGAGAGGTGA-GTTGAGCCTCA-GGACACGCTGAGGTATTTTCAATTTCTGTTATTCAAAAAT
131 AGCCACAGGACACGCTGAG-CT-ATGGACA-ACTGAGGTATTTTCAATTTCTATTCTTCAAAAAT
* *
95206545 CAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTT
193 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTATT
*
95206610 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATG
258 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
95206675 CCGAGGTATTTTC-AAA-------TTC----TGT-
323 CCGAGGTATTTTCAAAATTTGTTTTTCAAATTCTG
*
95206697 TTTTTAATTTCTGTTTATCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACAC
*
95206762 GCTGAGGTATTTCTTTTCAATTTCTGCTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTT
66 GCTGAGGTATTTCTTTTCAATTTCTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
95206827 GAGCCTCAGG--A--C--A-C----G----CTGAGGTATTTTCAATTTCTATTCTTCAAAAATCA
130 GAGCCACAGGACACGCTGAGCTATGGACAACTGAGGTATTTTCAATTTCTATTCTTCAAAAATCA
*
95206877 ACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTATTTT
195 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTATTTT
*
95206942 TAATTTCTGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCC
260 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCC
*
95207007 GAGGTATTTTCAAAATTTGTTTTTCAAACTCTG
325 GAGGTATTTTCAAAATTTGTTTTTCAAATTCTG
* *
95207040 TTTTTAATTTTTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCAGTGACA
1 TTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTC-GGGACA
* * *
95207105 CGCTGAGGTA----TTTTCAA-TTCATG--TTTC-AACAATCAACTCATATTGTGAGAAGTGAGT
65 CGCTGAGGTATTTCTTTTCAATTTC-TGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
95207162 TGAGCC
129 TGAGCC
95207168 TCGGGTCACA
Statistics
Matches: 1083, Mismatches: 71, Indels: 79
0.88 0.06 0.06
Matches are distributed among these distances:
330 169 0.16
331 3 0.00
335 1 0.00
336 32 0.03
338 7 0.01
339 4 0.00
340 9 0.01
341 1 0.00
342 2 0.00
343 56 0.05
344 16 0.01
345 92 0.08
346 40 0.04
350 2 0.00
356 5 0.00
357 46 0.04
358 248 0.23
360 116 0.11
366 1 0.00
369 1 0.00
371 10 0.01
373 221 0.20
374 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (357 bp):
TTTTTAATTTCTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACAC
GCTGAGGTATTTCTTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCACAGGACACGCTGAGCTATGGACAACTGAGGTATTTTCAATTTCTATTCTTCAAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTATTTTT
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCG
AGGTATTTTCAAAATTTGTTTTTCAAATTCTG
Found at i:95206570 original size:89 final size:91
Alignment explanation
Indices: 95206396--95206573 Score: 263
Period size: 89 Copynumber: 1.9 Consensus size: 91
95206386 ATTGTGAAAA
* * *
95206396 GTGAGTTGAGCCTCGGGACATGCTGAGGTATTTCTTTTCAATTTTTGCTTTTCAAAAAATCAACT
1 GTGAGTTGAGCCTCAGGACACGCTGAGGTA--T-TTTTCAATTTCTGCTTTTCAAAAAATCAACT
95206461 CATATTGCGAGAGGTGAGTTGAGCGAGAG
63 CATATTGCGAGAGGTGAGTTGAGCGAGAG
95206490 GTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTTCTG-TTATTC-AAAAATCAACTCA
1 GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTCAATTTCTGCTT-TTCAAAAAATCAACTCA
*
95206552 TATTGCGATAGGTGAGTTGAGC
65 TATTGCGAGAGGTGAGTTGAGC
95206574 CTCGGGTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
89 36 0.46
90 15 0.19
94 28 0.35
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (91 bp):
GTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTCAATTTCTGCTTTTCAAAAAATCAACTCAT
ATTGCGAGAGGTGAGTTGAGCGAGAG
Found at i:95206819 original size:79 final size:78
Alignment explanation
Indices: 95206697--95207015 Score: 328
Period size: 88 Copynumber: 4.0 Consensus size: 78
95206687 CAAATTCTGT
* * * *
95206697 TTTTTAATTTCTGTTTATCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGG-ACA
1 TTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACA
*
95206761 CGCTGAGGTATTTC
65 CGCCGAGGTATTTC
* *
95206775 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCAC
*
95206839 ACGCTGAGGTA----
64 ACGCCGAGGTATTTC
* *
95206850 TTTTCAATTTCTATTCTTC-AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTCTGTT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC
*
95206914 ATGCCGAGGTATTTTCAAATTC
64 ACGCCGAGGTA---T----TTC
* *
95206936 TATTTTTAATTTCTGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 --TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CA
*
95207001 CATGCCGAGGTATTT
63 CACGCCGAGGTATTT
95207016 TCAAAATTTG
Statistics
Matches: 207, Mismatches: 15, Indels: 35
0.81 0.06 0.14
Matches are distributed among these distances:
73 38 0.18
74 2 0.01
75 26 0.13
78 14 0.07
79 53 0.26
81 2 0.01
85 1 0.00
87 3 0.01
88 68 0.33
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (78 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAC
GCCGAGGTATTTC
Found at i:95206924 original size:75 final size:73
Alignment explanation
Indices: 95206697--95206941 Score: 285
Period size: 79 Copynumber: 3.2 Consensus size: 73
95206687 CAAATTCTGT
* * * * *
95206697 TTTTTAATTTCTGTTTATCAAAAAAACAACGCATATTGTGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTCAATTTCTATTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
95206762 GCTGAGGTA
65 GCTGAGGTA
* * *
95206771 TTTCTTTTCAATTTCTGCTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAG
1 ----TTTTCAATTTCT-ATTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
95206836 GACACGCTGAGGTA
60 GACACGCTGAGGTA
*
95206850 TTTTCAATTTCTATTCTTC-AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTCTATT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--AC
* *
95206914 ATGCCGAGGTA
63 ACGCTGAGGTA
*
95206925 TTTTCAAATTCTATTTT
1 TTTTCAATTTCTATTTT
95206942 TAATTTCTGT
Statistics
Matches: 148, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
73 38 0.26
74 4 0.03
75 40 0.27
78 13 0.09
79 53 0.36
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTA
Found at i:95207032 original size:14 final size:14
Alignment explanation
Indices: 95207013--95207062 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
95207003 TGCCGAGGTA
95207013 TTTTCAAAATTTGT
1 TTTTCAAAATTTGT
* *
95207027 TTTTCAAACTCTGT
1 TTTTCAAAATTTGT
**
95207041 TTTT-AATTTTTGT
1 TTTTCAAAATTTGT
95207054 TTTTCAAAA
1 TTTTCAAAA
95207063 AAACAACGCA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTTCAAAATTTGT
Found at i:95207114 original size:102 final size:102
Alignment explanation
Indices: 95206925--95207121 Score: 279
Period size: 102 Copynumber: 1.9 Consensus size: 102
95206915 TGCCGAGGTA
* * * *
95206925 TTTTCAAATTCTATTTTTAATTTCTGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAAACTCTATTTTTAATTTCTGTTTTCAAAAAAACAACGCATATTGCGAGAGGTGAGTTGA
* *
95206990 GCCTCGGGTCACATGCCGAGGTATTTTCAAAATTTGT
66 GCCTCGAGTCACACGCCGAGGTATTTTCAAAATTTGT
* * *
95207027 TTTTCAAACTCTGTTTTTAATTTTTGTTTTTCAAAAAAACAACGCATATTGTGAGAGGTGAGTTG
1 TTTTCAAACTCTATTTTTAATTTCTG-TTTTCAAAAAAACAACGCATATTGCGAGAGGTGAGTTG
* *
95207092 AGCCTC-AGTGACACGCTGAGGTATTTTCAA
65 AGCCTCGAGTCACACGCCGAGGTATTTTCAA
95207122 TTCATGTTTC
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
102 43 0.52
103 40 0.48
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (102 bp):
TTTTCAAACTCTATTTTTAATTTCTGTTTTCAAAAAAACAACGCATATTGCGAGAGGTGAGTTGA
GCCTCGAGTCACACGCCGAGGTATTTTCAAAATTTGT
Found at i:95207273 original size:21 final size:21
Alignment explanation
Indices: 95207226--95207279 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
95207216 TTTTGCCTCC
* **
95207226 TTGAAGTTGTAGTGGAGCTGA
1 TTGAAGTTGCAGTGGAGCACA
*
95207247 TCGAAGTTGCAGTGGAGCACA
1 TTGAAGTTGCAGTGGAGCACA
95207268 TTGAAGTTGCAG
1 TTGAAGTTGCAG
95207280 ATCTTATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.11, G:0.35, T:0.28
Consensus pattern (21 bp):
TTGAAGTTGCAGTGGAGCACA
Found at i:95207388 original size:21 final size:21
Alignment explanation
Indices: 95207364--95207407 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
95207354 CTAAAGTTAT
* *
95207364 AGTGGAGCTCATCGAAGTTGC
1 AGTGGAACACATCGAAGTTGC
*
95207385 AGTGGAACACATTGAAGTTGC
1 AGTGGAACACATCGAAGTTGC
95207406 AG
1 AG
95207408 ATCTTATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.23
Consensus pattern (21 bp):
AGTGGAACACATCGAAGTTGC
Found at i:95208836 original size:3 final size:3
Alignment explanation
Indices: 95208828--95208921 Score: 118
Period size: 3 Copynumber: 31.3 Consensus size: 3
95208818 TCCTTTTTGT
* *
95208828 TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
95208876 TTA TTG TTA TTG TTA TTG TTA TTA TTA TTA GTA TATA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
95208921 T
1 T
95208922 ATATGTATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.03
3 72 0.94
4 3 0.04
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:95208949 original size:23 final size:20
Alignment explanation
Indices: 95208897--95208958 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 20
95208887 GTTATTGTTA
95208897 TTATTAT-TA-GTATATATT
1 TTATTATATATGTATATATT
95208915 TTATTATATATGTATATATCT
1 TTATTATATATGTATATAT-T
*
95208936 TTAATATATATATGTACATATT
1 TT-AT-TATATATGTATATATT
95208958 T
1 T
95208959 ATGTAGTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
18 7 0.18
19 2 0.05
20 8 0.21
21 3 0.08
22 4 0.11
23 14 0.37
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.56
Consensus pattern (20 bp):
TTATTATATATGTATATATT
Found at i:95209033 original size:24 final size:23
Alignment explanation
Indices: 95208999--95209146 Score: 72
Period size: 24 Copynumber: 6.1 Consensus size: 23
95208989 TTCTAATAGG
*
95208999 TATATTTTATGTAAATATTTTAA
1 TATATGTTATGTAAATATTTTAA
*
95209022 TACTATGTTATG-AATATATTTTTTTA
1 TA-TATGTTATGTAA-ATA--TTTTAA
*
95209048 TATATGTTATATACATATATTTTTTAA
1 TATATGTTATGTA-A-ATA--TTTTAA
* *
95209075 TAT-TATTATGTATATATTTTAA
1 TATATGTTATGTAAATATTTTAA
* *
95209097 TATCA--TTA-GTTATATATTTTTA
1 TAT-ATGTTATG-TAAATATTTTAA
* *
95209119 TACTATTTTATGTATATATTTCTAA
1 TA-TATGTTATGTAAATATTT-TAA
95209144 TAT
1 TAT
95209147 TATATATTGA
Statistics
Matches: 102, Mismatches: 9, Indels: 27
0.74 0.07 0.20
Matches are distributed among these distances:
21 1 0.01
22 26 0.25
23 5 0.05
24 27 0.26
25 13 0.13
26 15 0.15
27 15 0.15
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.57
Consensus pattern (23 bp):
TATATGTTATGTAAATATTTTAA
Found at i:95209053 original size:25 final size:25
Alignment explanation
Indices: 95209016--95209094 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 25
95209006 TATGTAAATA
95209016 TTTTAATACTATGTTATGAATATATT
1 TTTTAATA-TATGTTATGAATATATT
* *
95209042 TTTTTATATATGTTATATACATATATT
1 TTTTAATATATGTTAT-GA-ATATATT
* *
95209069 TTTTAATAT-TATTATGTATATATT
1 TTTTAATATATGTTATGAATATATT
95209093 TT
1 TT
95209095 AATATCATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 9 0.20
25 8 0.18
26 13 0.29
27 15 0.33
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (25 bp):
TTTTAATATATGTTATGAATATATT
Found at i:95209094 original size:22 final size:22
Alignment explanation
Indices: 95209063--95209149 Score: 97
Period size: 22 Copynumber: 3.8 Consensus size: 22
95209053 GTTATATACA
*
95209063 TATATTTTTTAATATTATTATG
1 TATATATTTTAATATTATTATG
*
95209085 TATATATTTTAATATCATTA-G
1 TATATATTTTAATATTATTATG
95209106 TTATATATTTTTATACTATT-TTATG
1 -TATATA-TTTTA-A-TATTATTATG
95209131 TATATATTTCTAATATTAT
1 TATATATTT-TAATATTAT
95209150 ATATTGAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
21 1 0.02
22 28 0.51
23 10 0.18
24 12 0.22
25 4 0.07
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (22 bp):
TATATATTTTAATATTATTATG
Done.