Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 330 of 444
Found at i:95209279 original size:22 final size:22
Alignment explanation
Indices: 95209254--95209486 Score: 64
Period size: 22 Copynumber: 10.4 Consensus size: 22
95209244 ATTTCTAATG
*
95209254 TATATATA-TATCGTATATGTTT
1 TATATATATTAT-GTATATATTT
*
95209276 TATAAATATTATGTATATATTT
1 TATATATATTATGTATATATTT
** *
95209298 TATAT-TATCCT-TAT-TATTAG
1 TATATATATTATGTATATATT-T
***
95209318 TAT-TAATATTA-GTATGCGTTT
1 TATAT-ATATTATGTATATATTT
*
95209339 TAT-TATATGTA--TATATCTTT
1 TATATATAT-TATGTATATATTT
95209359 AATATATATATATATGTATATA-TT
1 --TATATATAT-TATGTATATATTT
*
95209383 TATGTAATATTAT-TA-ATAGTTGT
1 TATAT-ATATTATGTATATA-TT-T
* *
95209406 T-TTTAACATTAT-TAT-TATTT
1 TATAT-ATATTATGTATATATTT
*
95209426 CTAATATGTATATACTATGTAAATATTT
1 -T-ATA--TATAT--TATGTATATATTT
*
95209454 TAATACTATATTATGTATACATTT
1 T-ATA-TATATTATGTATATATTT
95209478 TATATATAT
1 TATATATAT
95209487 ATTACGTATA
Statistics
Matches: 160, Mismatches: 25, Indels: 52
0.68 0.11 0.22
Matches are distributed among these distances:
19 5 0.03
20 20 0.12
21 21 0.13
22 51 0.32
23 20 0.12
24 17 0.11
25 6 0.04
26 8 0.05
27 7 0.04
28 5 0.03
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (22 bp):
TATATATATTATGTATATATTT
Found at i:95209364 original size:19 final size:19
Alignment explanation
Indices: 95209337--95209373 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
95209327 TAGTATGCGT
* *
95209337 TTTATTATATGTATATATC
1 TTTAATATATATATATATC
95209356 TTTAATATATATATATAT
1 TTTAATATATATATATAT
95209374 GTATATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (19 bp):
TTTAATATATATATATATC
Found at i:95209468 original size:24 final size:24
Alignment explanation
Indices: 95209434--95209499 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
95209424 TTCTAATATG
* *
95209434 TATATACTATGTAAATATTTTA-A
1 TATATATTATGTATATATTTTATA
*
95209457 TACTATATTATGTATACATTTTATA
1 TA-TATATTATGTATATATTTTATA
*
95209482 TATATATTACGTATATAT
1 TATATATTATGTATATAT
95209500 GCCTTTTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.06
24 31 0.86
25 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (24 bp):
TATATATTATGTATATATTTTATA
Found at i:95209557 original size:45 final size:45
Alignment explanation
Indices: 95209508--95209611 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 45
95209498 ATGCCTTTTA
95209508 ATATTGTATTTTTATA-TATC-ATATATATATTTCGAATACTATATT
1 ATATTGTATTTTTATATTATCTATATATATATTT--AATACTATATT
* *
95209553 ATATT-T-TTTTACATATTATCTTATGTATATATTTAATACTATATT
1 ATATTGTATTTT-TATATTATC-TATATATATATTTAATACTATATT
*
95209598 ATGTATGTATTTTT
1 ATAT-TGTATTTTT
95209612 TAACGCCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
43 4 0.08
44 4 0.08
45 23 0.48
46 1 0.02
47 12 0.25
48 4 0.08
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.57
Consensus pattern (45 bp):
ATATTGTATTTTTATATTATCTATATATATATTTAATACTATATT
Found at i:95209648 original size:20 final size:21
Alignment explanation
Indices: 95209623--95209666 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
95209613 AACGCCATAT
*
95209623 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
95209643 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
95209664 TAT
1 TAT
95209667 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:95220287 original size:6 final size:6
Alignment explanation
Indices: 95220197--95220275 Score: 124
Period size: 6 Copynumber: 13.3 Consensus size: 6
95220187 ATAAAATAAG
*
95220197 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAT AAAGAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
95220244 AAAGAT AAAAAT AAAAAT AAACAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
95220276 CATAAAGATA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
5 5 0.08
6 61 0.92
ACGTcount: A:0.80, C:0.01, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:95222811 original size:40 final size:40
Alignment explanation
Indices: 95222765--95222894 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
95222755 GACTAGCTCA
*
95222765 AATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGGTT-TAGTAACTCGCACG
* *
95222805 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
*
95222845 AATGCCTTCGGG-CTTAA-CCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGG-TTTAGTAACTCGCACG
*
95222884 AACGCCTTCGG
1 AATGCCTTCGG
95222895 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 4 0.05
39 29 0.36
40 39 0.48
41 9 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
Found at i:95230879 original size:40 final size:39
Alignment explanation
Indices: 95230807--95230972 Score: 191
Period size: 39 Copynumber: 4.3 Consensus size: 39
95230797 ACGACTAGCT
* *
95230807 CAAATGCCTTCGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAA-CCCGGATT-TAGTAACTCGCA
* *
95230846 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
95230886 CAAATGCCTTCGGGCTTAACCC-GATTTATTAA---GCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
95230921 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
95230960 CGAACGCCTTCGG
1 CAAATGCCTTCGG
95230973 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
35 25 0.22
36 10 0.09
38 8 0.07
39 34 0.30
40 31 0.28
41 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:95230926 original size:35 final size:37
Alignment explanation
Indices: 95230842--95230972 Score: 158
Period size: 35 Copynumber: 3.5 Consensus size: 37
95230832 TATAGTAACT
* * *
95230842 CGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAA
1 CGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTAA
95230880 CTCGCACAAATGCCTTCGGGCTTAACCC-GATTTATTAA
1 --CGCACAAATGCCTTCGGGCTTAACCCGGATTTATTAA
95230918 -GCACAAATGCCTTCGGGCTTAACCCGGATTTATTAA
1 CGCACAAATGCCTTCGGGCTTAACCCGGATTTATTAA
* *
95230954 CTCGCACGAACGCCTTCGG
1 --CGCACAAATGCCTTCGG
95230973 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
35 25 0.30
36 10 0.12
38 8 0.10
39 22 0.27
40 17 0.21
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (37 bp):
CGCACAAATGCCTTCGGGCTTAACCCGGATTTATTAA
Found at i:95239239 original size:40 final size:39
Alignment explanation
Indices: 95239074--95239257 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
95239064 AAATTGAATG
* * *
95239074 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
95239114 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
95239154 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
95239194 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
95239233 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
95239258 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:95239282 original size:80 final size:81
Alignment explanation
Indices: 95239114--95239302 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
95239104 GCTGGAAATT
* * * *
95239114 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
95239179 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
95239195 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
95239258 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
95239274 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
95239303 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:95241723 original size:39 final size:39
Alignment explanation
Indices: 95241669--95241748 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
95241659 AACCTTTGCT
95241669 TAATGAACACAAGTCCCTAGCAAACATTCGGTAAAACAC
1 TAATGAACACAAGTCCCTAGCAAACATTCGGTAAAACAC
95241708 TAATGAACACAAGTCCCTAGCAAACATTCGGTAAAACAC
1 TAATGAACACAAGTCCCTAGCAAACATTCGGTAAAACAC
95241747 TA
1 TA
95241749 TGTTACACGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (39 bp):
TAATGAACACAAGTCCCTAGCAAACATTCGGTAAAACAC
Found at i:95249984 original size:43 final size:42
Alignment explanation
Indices: 95249811--95249973 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 42
95249801 ATAATCACAT
* * * * *
95249811 ATATCG-TGCCAATGTCCCAGACGTGGTTTTACATGCTATCAC
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATG-AATCAA
* *
95249853 ATATCGATGCC-ACTGTCCCAGACAGGGTCTTACACGAATCAA
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACATGAATCAA
* * *
95249895 ATA-CGATGCCGATGTCCTAGACATGGTCTTACGCAT-AATCAA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTA--CATGAATCAA
*
95249937 ATATCGACGCCAACGTCCCAGACATGGTCTTACATGA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATGA
95249974 GAACACATAT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
41 26 0.26
42 25 0.25
43 48 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAATCAA
Found at i:95252721 original size:3 final size:3
Alignment explanation
Indices: 95252715--95252778 Score: 119
Period size: 3 Copynumber: 21.0 Consensus size: 3
95252705 ACATTATCAT
95252715 CAC CAC CAC CAC CAC CAC CAC CAC CAC CACC CAC CAC CAC CAC CAC
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CA-C CAC CAC CAC CAC CAC
95252761 CAC CAC CAC CAC CAC CAC
1 CAC CAC CAC CAC CAC CAC
95252779 TATCACCATC
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 57 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:95257748 original size:40 final size:39
Alignment explanation
Indices: 95257703--95257910 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
95257693 CGGAATACAA
*
95257703 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
95257743 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
95257783 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
95257823 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
95257863 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
95257903 CCGGATAT
1 CCGGATAT
95257911 CATTCAATTA
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:95257843 original size:80 final size:81
Alignment explanation
Indices: 95257703--95257908 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
95257693 CGGAATACAA
* * *
95257703 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
95257767 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
95257783 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
95257846 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
95257863 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
95257909 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:95264960 original size:13 final size:13
Alignment explanation
Indices: 95264942--95264966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95264932 TAATTTATAT
95264942 GTGTGAAAATTTC
1 GTGTGAAAATTTC
95264955 GTGTGAAAATTT
1 GTGTGAAAATTT
95264967 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:95266238 original size:43 final size:44
Alignment explanation
Indices: 95266081--95266239 Score: 112
Period size: 43 Copynumber: 3.7 Consensus size: 44
95266071 ATGTGTTTTT
* * *
95266081 CATGTAAGACCATGTCTAGGATGTTGGCATCGATTTGTGATTTA
1 CATGTAAGACCACGTCTAGGATGTTGGCATCGATATGTGAGTTA
* * * * ** ** * *
95266125 CGTGTAAGACCATGTTTGGGACATCAGAATCG-TATATGAGTT-
1 CATGTAAGACCACGTCTAGGATGTTGGCATCGATATGTGAGTTA
* * *
95266167 CGTGTAAGACC-CTTTCTAGGACAG-TGGCATCGATATGTGA-TTA
1 CATGTAAGACCAC-GTCTAGGA-TGTTGGCATCGATATGTGAGTTA
*
95266210 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CATGTAAGACCACGTCTAGGATGTTGGCAT
95266240 TGTACGAGCT
Statistics
Matches: 84, Mismatches: 25, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
42 24 0.29
43 35 0.42
44 25 0.30
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
CATGTAAGACCACGTCTAGGATGTTGGCATCGATATGTGAGTTA
Found at i:95268765 original size:12 final size:12
Alignment explanation
Indices: 95268748--95268775 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
95268738 CACCGCCGTA
95268748 TGGTCACCCATG
1 TGGTCACCCATG
95268760 TGGTCACCCATG
1 TGGTCACCCATG
95268772 TGGT
1 TGGT
95268776 AGGCTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (12 bp):
TGGTCACCCATG
Found at i:95278645 original size:18 final size:20
Alignment explanation
Indices: 95278607--95278645 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
95278597 GATTTCGTAC
*
95278607 TTTGGCCCATTTTCTTCGTT
1 TTTGGCCCAGTTTCTTCGTT
95278627 TTTGGCCC-GTTTC-TCGTT
1 TTTGGCCCAGTTTCTTCGTT
95278645 T
1 T
95278646 CATTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.03, C:0.26, G:0.18, T:0.54
Consensus pattern (20 bp):
TTTGGCCCAGTTTCTTCGTT
Found at i:95287236 original size:28 final size:28
Alignment explanation
Indices: 95287155--95287238 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
95287145 ACGTTCACAC
* * *
95287155 GGCCCA-TCAGGCCCAATTCACATTCTAT
1 GGCCCATTC-GGCCCAAATCATATTATAT
* ** *
95287183 GGCCCATTAGGATCAATATAAT-TTATAT
1 GGCCCATTCGGCCCAA-ATCATATTATAT
95287211 GGCCCATTCGGCCCAAATCATATTATAT
1 GGCCCATTCGGCCCAAATCATATTATAT
95287239 TCATGTTCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
27 4 0.10
28 35 0.83
29 3 0.07
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (28 bp):
GGCCCATTCGGCCCAAATCATATTATAT
Found at i:95298440 original size:124 final size:124
Alignment explanation
Indices: 95298218--95298442 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
95298208 GAATTATGTG
* * * * * * *
95298218 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
95298283 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
95298342 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
95298407 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
95298443 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:95298564 original size:40 final size:40
Alignment explanation
Indices: 95298437--95298566 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
95298427 TTGCTGGAAA
* * *
95298437 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
95298477 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
95298517 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
95298557 TTATATCCGG
1 TTATATCCGG
95298567 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:95303237 original size:93 final size:93
Alignment explanation
Indices: 95303125--95303296 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95303115 CGCCCATAAG
* *
95303125 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95303190 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95303218 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95303283 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95303297 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95303293 original size:46 final size:46
Alignment explanation
Indices: 95303118--95303293 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95303108 ATGTAACCGC
* * *
95303118 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95303164 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95303214 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95303257 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95303294 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95310718 original size:46 final size:46
Alignment explanation
Indices: 95310651--95310822 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
95310641 TGTAACCCGC
*
95310651 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
95310697 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
95310747 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
95310790 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
95310823 TGGATGCTCA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:95310770 original size:93 final size:93
Alignment explanation
Indices: 95310658--95310829 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
95310648 CGCCCATAAG
* *
95310658 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95310723 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95310751 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
95310816 ACGAGTTTGGATGC
66 ACGAGTTCGGATGC
95310830 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95316279 original size:39 final size:39
Alignment explanation
Indices: 95316221--95316416 Score: 166
Period size: 39 Copynumber: 5.0 Consensus size: 39
95316211 TTCAGTGATG
* * *
95316221 TATATCCAGACGTAAGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
**
95316260 TATATCCGGACTTTGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* ** *
95316299 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
95316338 TATGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTAT-GTGCTGGAAT
** **
95316377 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AAT
95316416 T
1 T
95316417 GGTTTCAAGT
Statistics
Matches: 128, Mismatches: 25, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
38 16 0.12
39 112 0.88
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:95321780 original size:40 final size:40
Alignment explanation
Indices: 95321725--95321947 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
95321715 TATTCGGATG
95321725 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
95321765 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
95321807 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
95321847 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
95321887 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
95321927 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
95321948 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
39 26 0.16
40 101 0.62
42 23 0.14
43 13 0.08
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:95329990 original size:40 final size:40
Alignment explanation
Indices: 95329935--95330158 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
95329925 TATTCGGATG
95329935 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
95329975 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
95330018 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
95330058 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
95330098 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
95330138 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
95330159 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:95330078 original size:83 final size:80
Alignment explanation
Indices: 95329939--95330158 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
95329929 CGGATGATAT
* **
95329939 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
95330004 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
95330022 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
95330087 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
95330102 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
95330159 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:95336153 original size:39 final size:39
Alignment explanation
Indices: 95336099--95336224 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
95336089 TTCAGTGATG
*
95336099 TATATCCGGACTTAGGGTCCGTAGGCTATGTCCTGGAAT
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
* *
95336138 TATATCCGGACTTAGGGTTCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
* * *
95336177 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
*
95336216 TATGTCCGG
1 TATATCCGG
95336225 GCTAAAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
Found at i:95336251 original size:78 final size:78
Alignment explanation
Indices: 95336099--95336262 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
95336089 TTCAGTGATG
* * * ** *
95336099 TATATCCGGACTTAGGGTCCGTAGGCTATGTCCTGGAATTATATCCGGACTTAGGGTTCGCAGGC
1 TATATCCGGACTTAAGGTCCGTAGGCTACGTCCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
95336164 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * * *
95336177 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCATG
1 TATATCCGGACTTAAGGTCCGTAGGCTACGTCCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
95336241 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
95336255 TATA-CCGG
1 TATATCCGG
95336263 GTTTAAATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
77 9 0.12
78 63 0.88
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGTAGGCTACGTCCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:95338911 original size:46 final size:44
Alignment explanation
Indices: 95338803--95339016 Score: 153
Period size: 46 Copynumber: 4.6 Consensus size: 44
95338793 TATCTGTGCC
* * * *
95338803 GATGCCATGTCCCAGACAGGGTCTTACACTGAC-ACATCTTGTA-GCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTCATC-TG-AGGCT
* * *
95338849 GATCCATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCT-GAGGCT
* ** * * * *
95338895 GATGCATGTCCCAGACATGTCTTACATTAACACTCATCTAAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCT-GAGGCT
* * *
95338941 GATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTGAGGCT
95338989 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
95339017 AGCTCACACA
Statistics
Matches: 131, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 12 0.09
45 14 0.11
46 57 0.44
47 27 0.21
48 20 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTGAGGCT
Found at i:95341019 original size:9 final size:9
Alignment explanation
Indices: 95341007--95341063 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
95340997 TTTGATAAAC
95341007 ATGATATGT
1 ATGATATGT
*
95341016 ATGATATGCAC
1 ATGATATG--T
*
95341027 ATGACATGT
1 ATGATATGT
*
95341036 ATGATATGCAC
1 ATGATATG--T
95341047 ATGATATGT
1 ATGATATGT
95341056 ATGATATG
1 ATGATATG
95341064 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:95341030 original size:20 final size:20
Alignment explanation
Indices: 95341005--95341075 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
95340995 ATTTTGATAA
95341005 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95341025 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
95341045 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95341065 ACATGAGATGT
1 ACATGATATGT
95341076 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95341052 original size:11 final size:11
Alignment explanation
Indices: 95341016--95341070 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
95341006 CATGATATGT
95341016 ATGATATGCAC
1 ATGATATGCAC
* *
95341027 ATGACATG--T
1 ATGATATGCAC
95341036 ATGATATGCAC
1 ATGATATGCAC
*
95341047 ATGATATG--T
1 ATGATATGCAC
95341056 ATGATATGCAC
1 ATGATATGCAC
95341067 ATGA
1 ATGA
95341071 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95341152 original size:23 final size:23
Alignment explanation
Indices: 95341122--95341288 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
95341112 AGGAAGTGCA
95341122 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95341145 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
95341169 AAAGGGCTTATACCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
95341193 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95341216 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95341239 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
95341262 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
95341286 AAA
1 AAA
95341289 AGAGGCTAGG
Statistics
Matches: 137, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
23 71 0.52
24 66 0.48
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:95341177 original size:24 final size:23
Alignment explanation
Indices: 95341121--95341295 Score: 260
Period size: 24 Copynumber: 7.4 Consensus size: 23
95341111 GAGGAAGTGC
95341121 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95341144 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95341167 CAAAAGGGCTTATACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
95341191 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
95341215 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
95341238 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
95341262 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
95341286 AAAAGAGGCT
1 AAAAG-GGCT
95341296 AGGCCTCTAG
Statistics
Matches: 142, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
23 66 0.46
24 72 0.51
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:95341189 original size:47 final size:47
Alignment explanation
Indices: 95341120--95341288 Score: 277
Period size: 47 Copynumber: 3.6 Consensus size: 47
95341110 GGAGGAAGTG
95341120 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
95341167 CAAAAGGGCTTATACCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
95341215 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
95341261 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
95341289 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
46 22 0.19
47 69 0.61
48 22 0.19
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:95346709 original size:11 final size:11
Alignment explanation
Indices: 95346668--95346730 Score: 56
Period size: 12 Copynumber: 5.4 Consensus size: 11
95346658 ATATGTCTTG
95346668 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
95346681 AAAATTGAAAT
1 AAAATAAAAAT
95346692 GAAAATAAAAAT
1 -AAAATAAAAAT
95346704 AAAATAAAAA-
1 AAAATAAAAAT
95346714 ATAAATAAAAAAT
1 A-AAAT-AAAAAT
95346727 AAAA
1 AAAA
95346731 AGAATAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
10 1 0.02
11 17 0.40
12 18 0.43
13 6 0.14
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:95346730 original size:16 final size:14
Alignment explanation
Indices: 95346693--95346740 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 14
95346683 AATTGAAATG
*
95346693 AAAATAAAAATAAA
1 AAAAAAAAAATAAA
95346707 ATAAAAAATAAATAAA
1 A-AAAAAA-AAATAAA
95346723 AAATAAAAAGAATAAA
1 AAA-AAAAA-AATAAA
95346739 AA
1 AA
95346741 GATAGGAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 1 0.03
15 8 0.28
16 20 0.69
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAAAAAAAATAAA
Found at i:95352086 original size:13 final size:13
Alignment explanation
Indices: 95352064--95352096 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
95352054 AAGGGTTTGT
95352064 TTAT-TAAACTAA
1 TTATCTAAACTAA
95352076 TTATCTAAACTAA
1 TTATCTAAACTAA
*
95352089 TTAACTAA
1 TTATCTAA
95352097 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:95361054 original size:2 final size:2
Alignment explanation
Indices: 95361047--95361080 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
95361037 GCACCACAAC
95361047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95361081 GCAATTGCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95362205 original size:43 final size:41
Alignment explanation
Indices: 95362073--95362216 Score: 146
Period size: 43 Copynumber: 3.4 Consensus size: 41
95362063 TGCCAACGTC
* * * * *
95362073 CCAGACGTGGTCTTACATGCTATCACATATCGATGCCACTGT
1 CCAGACATGGTCTTACACG-AATCACATATCGATGTCAATGT
* * **
95362115 CCTAGACAGGGTCTTACACGAATCAAATA-CGATGTTGATGT
1 CC-AGACATGGTCTTACACGAATCACATATCGATGTCAATGT
*
95362156 GCCAGACATAGTCTTACACGTAATCACATATCGATGTCAATGT
1 -CCAGACATGGTCTTACACG-AATCACATATCGATGTCAATGT
95362199 CTCAGACATGGTCTTACA
1 C-CAGACATGGTCTTACA
95362217 TGAGAACACT
Statistics
Matches: 82, Mismatches: 15, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
41 23 0.28
42 20 0.24
43 39 0.48
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (41 bp):
CCAGACATGGTCTTACACGAATCACATATCGATGTCAATGT
Found at i:95365082 original size:40 final size:40
Alignment explanation
Indices: 95365037--95365203 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95365027 CGGAATATAA
95365037 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
95365077 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
95365117 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95365157 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95365196 CCGGATAT
1 CCGGATAT
95365204 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95373093 original size:40 final size:40
Alignment explanation
Indices: 95373048--95373214 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95373038 CGGAATATAA
95373048 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
95373088 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
95373128 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95373168 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95373207 CCGGATAT
1 CCGGATAT
95373215 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95378394 original size:2 final size:2
Alignment explanation
Indices: 95378387--95378412 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95378377 GCACCATAAC
95378387 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95378413 GCAATTGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95384214 original size:42 final size:42
Alignment explanation
Indices: 95384101--95384224 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
95384091 AGTATTATAC
* * * **
95384101 CAATGCCATATCCTAGATATGGTCTTACATGTAATCTTGTAT
1 CAATGCAATATCCCAAATATGGTCTTACATGTAATCTCATAT
* * *
95384143 CAATGCCAATAGCCCAACTATGATCTTACATG-AAGTCTCATAT
1 CAATG-CAATATCCCAAATATGGTCTTACATGTAA-TCTCATAT
* * * *
95384186 CAATGCTATATCCCAAATTTGGTCTTACACGTGATCTCA
1 CAATGCAATATCCCAAATATGGTCTTACATGTAATCTCA
95384225 ATAATCCTAA
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 32 0.50
43 32 0.50
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (42 bp):
CAATGCAATATCCCAAATATGGTCTTACATGTAATCTCATAT
Found at i:95385428 original size:41 final size:40
Alignment explanation
Indices: 95385343--95385625 Score: 217
Period size: 41 Copynumber: 7.0 Consensus size: 40
95385333 AACGCCGCAC
* **** *
95385343 AGAGCAATAGCGGCATTTTACAAAAAACGCCGCTAAAAAC
1 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
* *
95385383 AGAGCAATAGGGGCATTTTTTGGTAAAACGCCGCTAAAAAT
1 AGAGCAATAGCGGC-GTTTTTGGTAAAACGCCGCTAAAAAT
95385424 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
1 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
* * * * * *
95385464 CGGAGCATTAGCGGCGCTTTCGATAAAACGTCGCTAAAAAT
1 -AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
* * * ** *
95385505 CGGAGCATTAGCGGCGCTTTCCGTAAAACGCCGCTAAAAACC
1 -AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAA-T
* * * *** * *
95385547 ATAGCATTAGCGGCGCTTTCCATAAAATGCCGCTAAAAACC
1 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAA-T
* * * *
95385588 AAAGCATTAGCGGCGCTTTCT-GTAAAACACCGCTAAAA
1 AGAGCAATAGCGGCG-TTTTTGGTAAAACGCCGCTAAAA
95385626 GTCATATAAC
Statistics
Matches: 209, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
40 38 0.18
41 169 0.81
42 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (40 bp):
AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAAT
Found at i:95385538 original size:82 final size:81
Alignment explanation
Indices: 95385366--95385625 Score: 306
Period size: 82 Copynumber: 3.2 Consensus size: 81
95385356 CATTTTACAA
* * ** * *
95385366 AAAACGCCGCTAAAAACAGAGCAATAGGGGCATTTTTTGGTAAAACGCCGCTAAAAAT-AGAGCA
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGC-GCTTTCGATAAAACGCCGCTAAAAATCAGAGCA
* * **
95385430 ATAGCGGCGTTTTTGGT
65 TTAGCGGCGCTTTCCGT
* * *
95385447 AAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTCGATAAAACGTCGCTAAAAATCGGAGCA
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAATCAGAGCA
95385512 TTAGCGGCGCTTTCCGT
65 TTAGCGGCGCTTTCCGT
* * * * *
95385529 AAAACGCCGCTAAAAACCATAGCATTAGCGGCGCTTTCCATAAAATGCCGCTAAAAACCAAAGCA
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAATCAGAGCA
*
95385594 TTAGCGGCGCTTTCTGT
65 TTAGCGGCGCTTTCCGT
*
95385611 AAAACACCGCTAAAA
1 AAAACGCCGCTAAAA
95385626 GTCATATAAC
Statistics
Matches: 153, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
81 37 0.24
82 116 0.76
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAATCAGAGCAT
TAGCGGCGCTTTCCGT
Found at i:95385600 original size:123 final size:122
Alignment explanation
Indices: 95385405--95385625 Score: 300
Period size: 123 Copynumber: 1.8 Consensus size: 122
95385395 GCATTTTTTG
* * *** * **
95385405 GTAAAACGCCGCTAAAAATAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAATCGGAGC
1 GTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTCCATAAAACGCCGCTAAAAACCAAAGC
**
95385470 ATTAGCGGCGCTTTC-GATAAAACGTCGCTAAAAATCGGAGCATTAGCGGCGCTTTCC
66 ATTAGCGGCGCTTTCTG-TAAAACACCGCTAAAAATCGGAGCATTAGCGGCGCTTTCC
* * *
95385527 GTAAAACGCCGCTAAAAACCATAGCATTAGCGGCGCTTTCCATAAAATGCCGCTAAAAACCAAAG
1 GTAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTCCATAAAACGCCGCTAAAAACCAAAG
95385592 CATTAGCGGCGCTTTCTGTAAAACACCGCTAAAA
65 CATTAGCGGCGCTTTCTGTAAAACACCGCTAAAA
95385626 GTCATATAAC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
122 18 0.21
123 65 0.77
124 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (122 bp):
GTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTCCATAAAACGCCGCTAAAAACCAAAGC
ATTAGCGGCGCTTTCTGTAAAACACCGCTAAAAATCGGAGCATTAGCGGCGCTTTCC
Found at i:95385980 original size:21 final size:21
Alignment explanation
Indices: 95385954--95385997 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
95385944 TAGGAATTAT
*
95385954 GGTTTAAGTGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
*
95385975 GGTTTAGGGGTTAGGGGTTAA
1 GGTTTAAGGGTTAGGGGTTAA
95385996 GG
1 GG
95385998 GTCTATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:95386294 original size:7 final size:7
Alignment explanation
Indices: 95386279--95386309 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
95386269 AAGTTTAGGA
*
95386279 GTTAGGG
1 GTTATGG
95386286 GTTATGG
1 GTTATGG
95386293 GTTATGG
1 GTTATGG
95386300 GTTATGG
1 GTTATGG
95386307 GTT
1 GTT
95386310 CAGGGTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (7 bp):
GTTATGG
Found at i:95386301 original size:14 final size:14
Alignment explanation
Indices: 95386279--95386314 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
95386269 AAGTTTAGGA
95386279 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
*
95386293 GTTATGGGTTATGG
1 GTTAGGGGTTATGG
95386307 GTTCAGGG
1 GTT-AGGG
95386315 TTAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.14, C:0.03, G:0.47, T:0.36
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:95386344 original size:16 final size:16
Alignment explanation
Indices: 95386323--95386364 Score: 77
Period size: 15 Copynumber: 2.7 Consensus size: 16
95386313 GGTTAATATT
95386323 AACCCCTAAAACCTTA
1 AACCCCTAAAACCTTA
95386339 AACCCCT-AAACCTTA
1 AACCCCTAAAACCTTA
95386354 AACCCCTAAAA
1 AACCCCTAAAA
95386365 AATCATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (16 bp):
AACCCCTAAAACCTTA
Found at i:95387043 original size:19 final size:20
Alignment explanation
Indices: 95387008--95387051 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
95386998 TTAGATTTAA
95387008 AAAAACATTGATAAATAAAT
1 AAAAACATTGATAAATAAAT
95387028 AAAAACATTGAT-AATAAAT
1 AAAAACATTGATAAATAAAT
95387047 AAAAA
1 AAAAA
95387052 TAAAATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAACATTGATAAATAAAT
Found at i:95387054 original size:6 final size:6
Alignment explanation
Indices: 95387038--95387071 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
95387028 AAAAACATTG
95387038 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA AT
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA AT
95387072 GTATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:95387061 original size:13 final size:13
Alignment explanation
Indices: 95387045--95387069 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95387035 TTGATAATAA
95387045 ATAAAAATAAAAT
1 ATAAAAATAAAAT
95387058 ATAAAAATAAAA
1 ATAAAAATAAAA
95387070 ATGTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:95387081 original size:15 final size:14
Alignment explanation
Indices: 95387045--95387086 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
95387035 TTGATAATAA
95387045 ATAAAAAT-AAAAT
1 ATAAAAATAAAAAT
95387058 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
* *
95387072 GTATAAAATAGAAAT
1 ATA-AAAATAAAAAT
95387087 TAGTGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 8 0.32
14 7 0.28
15 10 0.40
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:95387306 original size:6 final size:6
Alignment explanation
Indices: 95387294--95387340 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
95387284 ACCCATACGA
* * *
95387294 TCCCTT CCCCTT CCCCTT CCCCTT TCCCTT TCCCTT TCCCTT TCCCT
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCT
95387341 GGTTTTGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (6 bp):
TCCCTT
Found at i:95390003 original size:19 final size:21
Alignment explanation
Indices: 95389975--95390022 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
95389965 TTATTATTTA
95389975 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
95389995 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
95390015 TTTTAGTT
1 TTTTAGTT
95390023 ACAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:95390227 original size:43 final size:43
Alignment explanation
Indices: 95390166--95390272 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
95390156 TTTAAATTTA
*
95390166 ATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCTACTAAAAATC
1 ATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCACTAAAAATC
* * * **
95390209 ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 ATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCACTAAAAATC
*
95390252 ATGACTTTTAGTGGCGTTTTT
1 ATGACTTTTAGCGGCGTTTTT
95390273 TTAAATAAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
ATGACTTTTAGCGGCGTTTTTGGGAAAAGCGCCACTAAAAATC
Found at i:95393067 original size:27 final size:28
Alignment explanation
Indices: 95393018--95393093 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
95393008 CCACAAAATA
**
95393018 GGTAAAATGACTGTAATACCCCCTGTA-G
1 GGTAAAATGACCATAATA-CCCCTGTATG
95393046 GGTAAAATGACCATAATACCCCTGTATG
1 GGTAAAATGACCATAATACCCCTGTATG
* *
95393074 GG-AAAATGACGATTATACCC
1 GGTAAAATGACCATAATACCC
95393094 TTGTGCTCCG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (28 bp):
GGTAAAATGACCATAATACCCCTGTATG
Found at i:95394141 original size:27 final size:27
Alignment explanation
Indices: 95394075--95394141 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
95394065 CTGTGGAATG
*
95394075 GGTTTTTGAAAATTTTTTCTCAAAATT
1 GGTTTTTGAAAGTTTTTTCTCAAAATT
** * *
95394102 GAGTTTTCAAAAGTTTTTT-TTAAACCTT
1 G-GTTTTTGAAAGTTTTTTCTCAAA-ATT
95394130 GGTTTTTGAAAG
1 GGTTTTTGAAAG
95394142 AGATGATTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.49
Consensus pattern (27 bp):
GGTTTTTGAAAGTTTTTTCTCAAAATT
Found at i:95399186 original size:28 final size:29
Alignment explanation
Indices: 95399119--95399219 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
95399109 ATAGTGAATC
*
95399119 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
95399148 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
95399176 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
95399206 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95399220 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:95407311 original size:29 final size:29
Alignment explanation
Indices: 95407278--95407438 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
95407268 GTGACGAGAT
95407278 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
95407307 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
95407336 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
95407365 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
95407394 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
95407423 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
95407439 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:95414557 original size:29 final size:29
Alignment explanation
Indices: 95414524--95414655 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
95414514 GTGACGAGAT
95414524 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
95414553 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
95414582 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
95414611 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
95414640 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
95414656 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:95416870 original size:28 final size:29
Alignment explanation
Indices: 95416803--95416903 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
95416793 ATAGTGAATC
*
95416803 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
95416832 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
95416860 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
95416890 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95416904 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:95426382 original size:27 final size:28
Alignment explanation
Indices: 95426331--95426396 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
95426321 CCCCAAAATA
95426331 GGTAAAATGACCGTAATACCTCCTGTAG
1 GGTAAAATGACCGTAATACCTCCTGTAG
*
95426359 GGTAAAATGACCGTAATACC-CCTGTAT
1 GGTAAAATGACCGTAATACCTCCTGTAG
95426386 GGTAAAATGAC
1 GGTAAAATGAC
95426397 AATTATGCCC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (28 bp):
GGTAAAATGACCGTAATACCTCCTGTAG
Found at i:95427382 original size:2 final size:2
Alignment explanation
Indices: 95427375--95427399 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95427365 GATACTTTGT
95427375 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95427400 GTACATTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95428482 original size:2 final size:2
Alignment explanation
Indices: 95428475--95428500 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95428465 ATTGAATCAC
95428475 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
95428501 ATTGATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95433148 original size:22 final size:22
Alignment explanation
Indices: 95433103--95433148 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
95433093 ATAGTTTATG
**
95433103 TCTGTAACACCCCTAACCTGTA
1 TCTGTAACACCCCTAACCCATA
* *
95433125 TCTGTAACACTCCTCACCCATA
1 TCTGTAACACCCCTAACCCATA
95433147 TC
1 TC
95433149 CGACGCCGGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.39, G:0.07, T:0.28
Consensus pattern (22 bp):
TCTGTAACACCCCTAACCCATA
Found at i:95440449 original size:40 final size:39
Alignment explanation
Indices: 95440284--95440467 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
95440274 AAATTGAATG
* * *
95440284 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
95440324 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
95440364 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
95440404 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
95440443 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
95440468 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:95440492 original size:80 final size:81
Alignment explanation
Indices: 95440324--95440512 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
95440314 GCTGGAAATT
* * * *
95440324 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
95440389 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
95440405 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
95440468 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
95440484 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
95440513 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:95450817 original size:27 final size:29
Alignment explanation
Indices: 95450787--95450884 Score: 96
Period size: 27 Copynumber: 3.5 Consensus size: 29
95450777 GCAATAAGCC
* *
95450787 CGCACACTTAGTGCTTA-ATAGTC-GACT
1 CGCACACTTAGTGCTTATATAATCAAACT
95450814 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* * ** *
95450842 TGCACACTTAGTGCTGTATA-ATTTGAACC
1 CGCACACTTAGTGCT-TATATAATCAAACT
95450871 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95450885 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.03
27 19 0.32
28 16 0.27
29 18 0.31
30 4 0.07
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:95450855 original size:28 final size:26
Alignment explanation
Indices: 95450787--95450884 Score: 97
Period size: 28 Copynumber: 3.5 Consensus size: 26
95450777 GCAATAAGCC
* *
95450787 CGCACACTTAGTGCTTAATAGTCGACT
1 CGCACACTTAGTGCTT-ATAATCAACT
95450814 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATC-AACT
* * *
95450842 TGCACACTTAGTGCTGTATAATTTGAACC
1 CGCACACTTAGTGCT-TATAA--TCAACT
95450871 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95450885 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 20 0.33
28 23 0.38
29 16 0.27
30 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CGCACACTTAGTGCTTATAATCAACT
Found at i:95453298 original size:40 final size:40
Alignment explanation
Indices: 95453243--95453546 Score: 430
Period size: 40 Copynumber: 7.5 Consensus size: 40
95453233 TATTCGGATG
95453243 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
95453283 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
*
95453326 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
95453366 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
95453406 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
95453446 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
95453486 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
95453526 ATATTC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
95453547 AAACTTGGGT
Statistics
Matches: 242, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.05
40 190 0.79
41 1 0.00
42 1 0.00
43 37 0.15
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:95463184 original size:29 final size:29
Alignment explanation
Indices: 95463130--95463185 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
95463120 CTATTACAAT
* *
95463130 TATTATCATTATAACTATTATTATATAAC
1 TATTATCATTATAACTATAATCATATAAC
*
95463159 TATTATCATTATTA-TATAATACATATA
1 TATTATCATTATAACTATAAT-CATATA
95463186 TATATTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (29 bp):
TATTATCATTATAACTATAATCATATAAC
Found at i:95467426 original size:36 final size:36
Alignment explanation
Indices: 95467385--95467476 Score: 184
Period size: 36 Copynumber: 2.6 Consensus size: 36
95467375 TATATAGCCT
95467385 CCCAAAACGACGTCGTTTTGGGGGCTGCCATTTAAC
1 CCCAAAACGACGTCGTTTTGGGGGCTGCCATTTAAC
95467421 CCCAAAACGACGTCGTTTTGGGGGCTGCCATTTAAC
1 CCCAAAACGACGTCGTTTTGGGGGCTGCCATTTAAC
95467457 CCCAAAACGACGTCGTTTTG
1 CCCAAAACGACGTCGTTTTG
95467477 ATGCGACCCG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (36 bp):
CCCAAAACGACGTCGTTTTGGGGGCTGCCATTTAAC
Found at i:95468238 original size:19 final size:19
Alignment explanation
Indices: 95468203--95468239 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
95468193 TTCTATATTA
* *
95468203 TTATTATTATTATTGTTAC
1 TTATTATTATCACTGTTAC
95468222 TTATTATTATCACTGTTA
1 TTATTATTATCACTGTTA
95468240 TGTACATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (19 bp):
TTATTATTATCACTGTTAC
Found at i:95468303 original size:3 final size:3
Alignment explanation
Indices: 95467971--95468286 Score: 192
Period size: 3 Copynumber: 103.7 Consensus size: 3
95467961 TGAATTTCTA
*
95467971 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * *
95468020 TAT TAT TAT TAC TGT TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT
1 TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT
*
95468067 TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
95468115 TA- TATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT T-T
1 TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT TAT
* *
95468160 TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T CTA- TAT
1 TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT -TAT TAT
* * * * *
95468201 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT CAC TGT TAT GTACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT
* *
95468249 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TAT TA
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA
95468287 CATTTACTAT
Statistics
Matches: 245, Mismatches: 36, Indels: 64
0.71 0.10 0.19
Matches are distributed among these distances:
2 24 0.10
3 190 0.78
4 27 0.11
5 4 0.02
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:95468910 original size:23 final size:23
Alignment explanation
Indices: 95468868--95468925 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
95468858 TTTTACTATC
* *
95468868 TTATGTATATACTTCAAACACTA
1 TTATATATATATTTCAAACACTA
*
95468891 -TATATAGTATATTTCTAACACTA
1 TTATATA-TATATTTCAAACACTA
95468914 TTATATATATAT
1 TTATATATATAT
95468926 ATATATATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.17
23 19 0.63
24 6 0.20
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (23 bp):
TTATATATATATTTCAAACACTA
Found at i:95476671 original size:40 final size:41
Alignment explanation
Indices: 95476626--95476792 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
95476616 CGGAATATAA
*
95476626 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
95476666 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
95476706 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95476746 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
95476785 CCGGATAT
1 CCGGATAT
95476793 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95477637 original size:17 final size:19
Alignment explanation
Indices: 95477614--95477659 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95477604 AAGAAGCATG
95477614 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95477632 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95477650 AATCATGCTC
1 AATCATGCTC
95477660 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95488751 original size:40 final size:40
Alignment explanation
Indices: 95488706--95488871 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
95488696 CGGAATATAA
95488706 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
95488746 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
95488786 CCGGATAT-GCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95488825 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95488864 CCGGATAT
1 CCGGATAT
95488872 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95488828 original size:39 final size:39
Alignment explanation
Indices: 95488722--95488832 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 39
95488712 ATAATCACGT
* *
95488722 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATG-ACAACTA
*
95488762 GCACGAATGCCTTCGGGTCTTAGCCCGGATATG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATGACAACTA
*
95488801 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
95488833 AATTTCCAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 31 0.48
40 30 0.47
41 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATGACAACTA
Found at i:95488855 original size:79 final size:78
Alignment explanation
Indices: 95488722--95488871 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
95488712 ATAATCACGT
*
95488722 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
95488787 CGGATATGCCACTA
65 CGGATATGCCACTA
* * ** * *
95488801 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
95488864 CCGGATAT
64 CCGGATAT
95488872 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATGCCACTA
Found at i:95496745 original size:40 final size:40
Alignment explanation
Indices: 95496700--95496866 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95496690 CGGAATATAA
95496700 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
95496740 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
95496780 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95496820 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95496859 CCGGATAT
1 CCGGATAT
95496867 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95497713 original size:17 final size:19
Alignment explanation
Indices: 95497690--95497735 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95497680 AAGAAGCATG
95497690 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95497708 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95497726 AATCATGCTC
1 AATCATGCTC
95497736 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95504321 original size:74 final size:74
Alignment explanation
Indices: 95504144--95505256 Score: 1040
Period size: 74 Copynumber: 14.7 Consensus size: 74
95504134 TTATATTTTC
* * ** * ** * **
95504144 AAAATTCAACTCATATTACGAGAAATGAGTTGAGTCTCAAGACACGTTGAGGTAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
*
95504209 TATTTTC--
66 TGTTTTCAA
95504216 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504280 TGTTTTCAA
66 TGTTTTCAA
*
95504289 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
95504354 TATTTTTAA
66 TGTTTTCAA
** ** * * *
95504363 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504428 TGTTTTCAA
66 TGTTTTCAA
* ** * *
95504437 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAATT
*
95504502 CCTGTTTGTC--
64 TCTGTTT-TCAA
* * * *
95504512 -AAAATCAACTCATATTGCGAGATGTGAGCTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTAATTTC-AA
*
95504575 GTATGCT-TTTTCAA
62 -T-TTCTGTTTTCAA
* * ** * * * * * * *
95504589 TTTATTTTTGTCAAAA--AAATCCA-ACT-CGTATTGCGAGAGGTGAG--TTGAGCCTCG-GGAC
1 ---A--------AAAATCAACT-CATATTGCG-AGAG-GTGAGTTGAGCCTCGGGACACGCTG--
* * ** *
95504647 ACGCTGAGGTAATTTCAATTTCTGTTTTCAA
50 A-GGTAATTTCA-----ATTTCTGTTTTCAA
95504678 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504743 TGTTTTCAA
66 TGTTTTCAA
* *
95504752 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504817 TGTTTTCAAAAA
66 TGTTTTC---AA
*
95504829 AAAAATCAACTCATATTGCGAGAGGTTAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504894 TGTTTTCAA
66 TGTTTTCAA
** ** * *
95504903 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
95504968 TGTTTTCAA
66 TGTTTTCAA
* * *
95504977 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGTTCACATGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAATT
*
95505042 TCTGTTGTCAA
64 TCTGTTTTCAA
* *
95505053 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TCAA-TT
*
95505117 TTTGTATGTTTCAA
64 TCTG--T-TTTCAA
** *
95505131 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TCAA-TT
*
95505195 TTTGTATGTTTC--
64 TCTG--T-TTTCAA
* **
95505207 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTTAGGACACGCTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
95505257 ATAAGTTGAG
Statistics
Matches: 870, Mismatches: 116, Indels: 106
0.80 0.11 0.10
Matches are distributed among these distances:
71 60 0.07
73 5 0.01
74 420 0.48
75 9 0.01
76 141 0.16
77 77 0.09
78 80 0.09
79 15 0.02
80 8 0.01
81 8 0.01
82 1 0.00
83 1 0.00
84 2 0.00
85 2 0.00
86 9 0.01
87 6 0.01
88 13 0.01
89 12 0.01
90 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAA
Found at i:95504428 original size:148 final size:148
Alignment explanation
Indices: 95504144--95505256 Score: 1312
Period size: 148 Copynumber: 7.3 Consensus size: 148
95504134 TTATATTTTC
* * ** * ** * **
95504144 AAAATTCAACTCATATTACGAGAAATGAGTTGAGTCTCAAGACACGTTGAGGTAATTTTTATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
95504209 TATTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
95504271 TTCAATTTCTGTTTTCAA
131 TTCAATTTCTGTTTTCAA
*
95504289 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* * ** ** * *
95504354 TATTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTATT
66 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
95504419 TTCAATTTCTGTTTTCAA
131 TTCAATTTCTGTTTTCAA
* ** * *
95504437 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAATT
* * *
95504502 CCTGTTTGTC---AAAATCAACTCATATTGCGAGATGTGAGCTGAGCCTCGGGTCACATG-TCGA
64 TCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACATGCT-GA
* *
95504563 GGTATTTTCAAAGTATGCTTTTTCAATTTATTTTTGTCAA
125 GG-----T---A--A-----TTTCAATTTCTGTTT-TCAA
*
95504603 AAAAATCCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
*
95504668 CTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
65 CTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAA
95504733 TTTCAATTTCTGTTTTCAA
130 TTTCAATTTCTGTTTTCAA
* *
95504752 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
95504817 TGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTTAGTTGAGCCTCGGGACACGCTGAGGT
66 TGTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGT
95504882 AATTTCAATTTCTGTTTTCAA
128 AATTTCAATTTCTGTTTTCAA
** ** * *
95504903 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
95504968 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGTA
*
95505033 ATTTCAATTTCTGTTGTCAA
129 ATTTCAATTTCTGTTTTCAA
* *
95505053 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TCAA-TT
* **
95505117 TTTGTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAG
64 TCTG--T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAG
*
95505182 GT-ATTGTCAATTTTTTGTATGTTTC--
126 GTAATT-TCAA-TTTCTG--T-TTTCAA
* **
95505207 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTTAGGACACGCTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
95505257 ATAAGTTGAG
Statistics
Matches: 841, Mismatches: 82, Indels: 81
0.84 0.08 0.08
Matches are distributed among these distances:
145 60 0.07
148 244 0.29
149 14 0.02
150 127 0.15
151 148 0.18
152 16 0.02
153 6 0.01
154 88 0.10
155 3 0.00
156 3 0.00
157 1 0.00
158 1 0.00
160 1 0.00
164 2 0.00
165 47 0.06
166 12 0.01
167 68 0.08
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (148 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
TTCAATTTCTGTTTTCAA
Found at i:95504860 original size:151 final size:148
Alignment explanation
Indices: 95504583--95505256 Score: 942
Period size: 151 Copynumber: 4.5 Consensus size: 148
95504573 AAGTATGCTT
* *
95504583 TTTCAATTTATTTTTGTCAAAAAAATCCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTCAATTTCTGTTT-TCAAAAAAAT-CAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACA
95504648 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
64 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
95504713 CTCGGGACACGCTGAGGTAA
129 CTCGGGACACGCTGAGGTAA
*
95504733 TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
*
95504798 CTGAGGTAATTTCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTTAGTTGAG
66 CTGAGGTAATTTCAATTTCTGTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
95504863 CCTCGGGACACGCTGAGGTAA
128 CCTCGGGACACGCTGAGGTAA
* ** **
95504884 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
* * *
95504949 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT
66 CTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
95505014 CGGTTCACATGCTGAGGTAA
131 CGG--GACACGCTGAGGTAA
* *
95505034 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
*
95505099 CTGAGGT-ATTGTCAATTTTTTGTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
66 CTGAGGTAATT-TCAA-TTTCTG--T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
** *
95505163 AGCCTCAAGACATGCTGAGGT-A
126 AGCCTCGGGACACGCTGAGGTAA
* * * **
95505185 TTGTCAATTTTTTGTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTTAGG
1 TT-TCAA-TTTCTG--T-TTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGG
95505248 ACACGCTGA
61 ACACGCTGA
95505257 ATAAGTTGAG
Statistics
Matches: 473, Mismatches: 36, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
148 106 0.22
149 12 0.03
150 94 0.20
151 147 0.31
152 16 0.03
153 6 0.01
154 88 0.19
155 1 0.00
156 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (148 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGGACACGCTGAGGTAA
Found at i:95504990 original size:540 final size:520
Alignment explanation
Indices: 95504140--95505256 Score: 1589
Period size: 540 Copynumber: 2.1 Consensus size: 520
95504130 TTATTTATAT
* * ** * * * **
95504140 TTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGTCTCAAGACACGTTGAGGTAATTTTTA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
*
95504205 TTTCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
66 TTTCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAA
95504270 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
131 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
*
95504335 CTGAGGTAATTTCAATTTCTATTTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
196 CTGAGGTAATTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * *
95504400 CAAGACATGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGA
261 CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAA
95504465 GTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATTCCTGTTTGTC-AAAATCAACTCATATTG
326 GTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATTCCTG-TTGTCAAAAATCAACTCATATTG
* * * * *
95504529 CGAGATGTGAGCTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAGTATGCTTTTTCAATTTA
390 CGAGAGGCGAGCTGAGCCTCGGG--ACACGCT-GAGGTATTGTC--A--A---TTTTT---TGTA
* * **
95504593 TTTTTGTCAAAAAAATCCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
442 -TGTT-TCAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT-
95504658 ATT-TCAA-TTTCTG-T-
503 ATTGTCAATTTTCTGATG
*
95504672 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* *
95504737 AATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGA
64 AATTTCTATTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGA
*
95504802 GGTAATTTCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTTAGTTGAGCCTC
126 GGTAATTTCAATTTCTGTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
95504867 GGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAG
188 GGGACACACTGAGGTAATTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAG
95504932 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCG
253 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCG
* * *
95504997 AGAGGTAAGTTGAGCCTCGGTTCACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAA
318 AGAGGTAAGTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATTCCTGTTGTC--AAAAATCAA
* *
95505062 CTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTTTGTATGTT
381 CTCATATTGCGAGAGGCGAGCTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTTTGTATGTT
*
95505127 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTGTCAA
446 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAA
*
95505192 TTTTTTGTATG
511 TTTTCTG-ATG
* *
95505203 TTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTTAGGACACGCTGA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
95505257 ATAAGTTGAG
Statistics
Matches: 529, Mismatches: 39, Indels: 37
0.87 0.06 0.06
Matches are distributed among these distances:
526 3 0.01
527 47 0.09
528 15 0.03
529 50 0.09
530 4 0.01
531 4 0.01
532 4 0.01
533 5 0.01
534 61 0.12
536 1 0.00
537 69 0.13
538 1 0.00
539 5 0.01
540 223 0.42
541 1 0.00
542 36 0.07
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (520 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAA
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
CTGAGGTAATTTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAA
GTTGAGCCTCAGTTCACATGCTAAGGTAATTTCAATTCCTGTTGTCAAAAATCAACTCATATTGC
GAGAGGCGAGCTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTTTGTATGTTTCAAAAAAAT
CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTTTCTGATG
Found at i:95504996 original size:225 final size:223
Alignment explanation
Indices: 95504596--95505256 Score: 972
Period size: 225 Copynumber: 2.9 Consensus size: 223
95504586 CAATTTATTT
95504596 TTGTCAAAAAAATCCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
1 TTGTCAAAAAAAT-CAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
**
95504661 TCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
65 TCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
* *
95504726 GAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCG
130 GAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
95504791 GGACACA-CTGAGGTAATTTCAATTTCTG
195 GGACACAGCTGAGGTAATTTCAATTTCTG
* * *
95504819 TTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTTAGTTGAGCCTCGGGACACGCTGAGGTAA
1 TTGTC---AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
**
95504884 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
63 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
* *
95504949 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCT
128 CTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
**
95505014 CGGTTCACATGCTGAGGTAATTTCAATTTCTG
193 CGGGACACA-GCTGAGGTAATTTCAATTTCTG
*
95505046 TTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCTGAGGT-ATTG
1 TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-
*
95505110 TCAATTTTTTGTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
65 TCAA-TTTCTG--T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
95505175 TGCTGAGGTATTGTCAATTTTTTGTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAATT
126 CGCTGAGGTATTTTCAA-TTTCTG--T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
**
95505238 GAGCCTTAGGACAC-GCTGA
187 GAGCCTCGGGACACAGCTGA
95505257 ATAAGTTGAG
Statistics
Matches: 394, Mismatches: 30, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
223 7 0.02
224 56 0.14
225 181 0.46
226 8 0.02
227 26 0.07
228 67 0.17
229 5 0.01
230 39 0.10
231 1 0.00
232 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (223 bp):
TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
CAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
AGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
GACACAGCTGAGGTAATTTCAATTTCTG
Found at i:95507301 original size:9 final size:9
Alignment explanation
Indices: 95507212--95507315 Score: 51
Period size: 9 Copynumber: 11.9 Consensus size: 9
95507202 TGAATTTCTA
*
95507212 TATTATTAT
1 TATTATTAC
*
95507221 TATTATTAT
1 TATTATTAC
* *
95507230 TGTTACTTAT
1 TATTA-TTAC
*
95507240 TATTATCAC
1 TATTATTAC
95507249 TATTATGTAC
1 TATTAT-TAC
95507259 ATATTATT--
1 -TATTATTAC
*
95507267 TA-TACTA-
1 TATTATTAC
* *
95507274 TACTTAATAT
1 TA-TTATTAC
95507284 TATTATTAC
1 TATTATTAC
95507293 TATTATTAC
1 TATTATTAC
95507302 -A-T-TTAC
1 TATTATTAC
95507308 TATTATTA
1 TATTATTA
95507316 TTTATAAATA
Statistics
Matches: 76, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
6 7 0.09
7 6 0.08
8 2 0.03
9 42 0.55
10 13 0.17
11 6 0.08
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.56
Consensus pattern (9 bp):
TATTATTAC
Found at i:95507317 original size:3 final size:3
Alignment explanation
Indices: 95506988--95507300 Score: 193
Period size: 3 Copynumber: 102.7 Consensus size: 3
95506978 TGAATTTCTA
* * * *
95506988 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* * * *
95507036 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAC TAT TAT TAT CAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
95507081 CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
95507129 TAT TAT TAT TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT T-T
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT TAT
* *
95507174 TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T CTA- TAT
1 TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT -TAT TAT
* * * *
95507215 TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT CAC TAT TAT GTACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT
* * *
95507263 TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAC TAT TAT TA
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA
95507301 CATTTACTAT
Statistics
Matches: 242, Mismatches: 38, Indels: 60
0.71 0.11 0.18
Matches are distributed among these distances:
2 22 0.09
3 191 0.79
4 25 0.10
5 4 0.02
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:95507358 original size:12 final size:13
Alignment explanation
Indices: 95507332--95507360 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
95507322 AATATTAGTG
95507332 TATATTTTTATTA
1 TATATTTTTATTA
95507345 TATATTTTTA-TA
1 TATATTTTTATTA
95507357 TATA
1 TATA
95507361 CTCTTTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATATTTTTATTA
Found at i:95507486 original size:3 final size:3
Alignment explanation
Indices: 95507471--95507526 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
95507461 CTTTCTTTTG
*
95507471 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95507519 TAT TAT TA
1 TAT TAT TA
95507527 ATAGGTACTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:95507833 original size:2 final size:2
Alignment explanation
Indices: 95507826--95507863 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
95507816 ATATTTATTT
* *
95507826 TA TA TA TA TA TA TA TA TA TA TG TA TA TA T- TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95507864 TTTAACGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95521157 original size:63 final size:62
Alignment explanation
Indices: 95521031--95521167 Score: 175
Period size: 63 Copynumber: 2.2 Consensus size: 62
95521021 CGGCCTGGGT
* * *
95521031 ACACGTCCGTGTGCCTGGCCGTGTGGTTTTATTCCACAAACAGTGAGTTACACGGCTAAGAC
1 ACACGCCCGTGTGCCTGGCCGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAAGAC
* * * * * **
95521093 ACACGCTCGTGTGCCTTGCTCGTGTGGTTTTGTACCACAAATAGTGAGTTACACATCTCCGAC
1 ACACGCCCGTGTGCCTGGC-CGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAAGAC
95521156 ACACGCCCGTGT
1 ACACGCCCGTGT
95521168 CCATTGTCTG
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 16 0.25
63 47 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (62 bp):
ACACGCCCGTGTGCCTGGCCGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAAGAC
Found at i:95521295 original size:5 final size:5
Alignment explanation
Indices: 95521287--95521315 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
95521277 AAAATAAAAA
95521287 TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTAT
95521316 GGTTGGCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:95530173 original size:49 final size:49
Alignment explanation
Indices: 95530117--95530355 Score: 318
Period size: 49 Copynumber: 4.8 Consensus size: 49
95530107 TAGCCAAAGC
** *
95530117 TATCTGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
95530166 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
95530216 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *
95530267 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
95530316 TAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACAC
95530356 ATGACCTCAC
Statistics
Matches: 166, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
49 79 0.48
50 48 0.29
51 39 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:95530292 original size:101 final size:98
Alignment explanation
Indices: 95530130--95530355 Score: 328
Period size: 101 Copynumber: 2.3 Consensus size: 98
95530120 CTGGTACGTA
* *
95530130 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
*
95530195 GTACTACACACGTGACCTAACCA-TCTGATACACG
66 GTACTACACACGCGACC-AACCATTC-GATACACG
* *
95530229 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
* ** *
95530294 TAGTACTACACATGCGACCAATTATTCGGTACACG
64 TAGTACTACACACGCGACCAACCATTCGATACACG
95530329 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
95530356 ATGACCTCAC
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
99 29 0.25
100 40 0.35
101 46 0.40
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATTCGATACACG
Found at i:95534304 original size:15 final size:16
Alignment explanation
Indices: 95534286--95534315 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95534276 TAAAAATAGA
95534286 TTTTTTAT-ATTTTAT
1 TTTTTTATAATTTTAT
95534301 TTTTTTATAATTTTA
1 TTTTTTATAATTTTA
95534316 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATAATTTTAT
Found at i:95535456 original size:18 final size:18
Alignment explanation
Indices: 95535433--95535476 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
95535423 CCTTTCCCCC
95535433 CTCCCTTCTCTCTTCTTT
1 CTCCCTTCTCTCTTCTTT
* * *
95535451 CTCCCTTTTTTTTTCTTT
1 CTCCCTTCTCTCTTCTTT
*
95535469 CTCTCTTC
1 CTCCCTTC
95535477 AAAATGATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (18 bp):
CTCCCTTCTCTCTTCTTT
Found at i:95536142 original size:18 final size:17
Alignment explanation
Indices: 95536109--95536164 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 17
95536099 TTTTTGTACA
*
95536109 TATTATTA-TTTTATAT
1 TATTATTACTATTATAT
95536125 TATTATTACTAATTATAT
1 TATTATTACT-ATTATAT
* * * *
95536143 CATTTTTCCTATTTTAT
1 TATTATTACTATTATAT
95536160 TATTA
1 TATTA
95536165 GTACATGATT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 8 0.26
17 10 0.32
18 13 0.42
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTATTACTATTATAT
Found at i:95546418 original size:77 final size:74
Alignment explanation
Indices: 95546325--95546608 Score: 325
Period size: 66 Copynumber: 3.9 Consensus size: 74
95546315 GTTTTATTTC
* * *
95546325 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TT
**
95546390 TTCGTATGTTTC
64 TT-GTATGTTAA
*
95546402 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
**
95546463 --A--AAAA
66 GTATGTTAA
* * *
95546468 AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
95546533 TGT-TGTCAA
65 TGTATGTTAA
* *
95546542 AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
95546607 TT
64 TT
95546609 CGTTTTTCAA
Statistics
Matches: 177, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
66 57 0.32
68 1 0.01
74 40 0.23
75 1 0.01
76 21 0.12
77 57 0.32
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
GTATGTTAA
Found at i:95546517 original size:143 final size:141
Alignment explanation
Indices: 95546325--95546604 Score: 402
Period size: 143 Copynumber: 2.0 Consensus size: 141
95546315 GTTTTATTTC
* * * *
95546325 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
* *** * * *
95546389 TTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGCGCTGAG
64 TCT-GT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAG
95546453 GTATTTTCAAAAAAA
127 GTATTTTCAAAAAAA
95546468 AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
95546533 TGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTA
66 TGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTA
95546598 TTTTCAA
130 TTTTCAA
95546605 TTTTCGTTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
140 43 0.35
141 2 0.02
142 22 0.18
143 53 0.43
144 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (141 bp):
AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAT
TTTCAAAAAAA
Found at i:95546606 original size:76 final size:74
Alignment explanation
Indices: 95546466--95546607 Score: 221
Period size: 74 Copynumber: 1.9 Consensus size: 74
95546456 TTTTCAAAAA
* *
95546466 AAAAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
95546531 TCTGTTGTC
66 TCTGTTGTC
* * *
95546540 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
95546605 TTT
64 TTT
95546608 TCGTTTTTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 40 0.66
76 21 0.34
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (74 bp):
AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
TCTGTTGTC
Found at i:95546806 original size:168 final size:167
Alignment explanation
Indices: 95546463--95546913 Score: 656
Period size: 169 Copynumber: 2.7 Consensus size: 167
95546453 GTATTTTCAA
* *
95546463 AAAAAAAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTAATTTCA
*
95546528 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
65 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCA
*
95546593 AGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTC
130 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
*
95546631 AAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGGACACGCTGAGGTAATTTCA
1 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTAATTTCA
* * * * *
95546696 ATTTCTGTTGTAAAAAAAAATCAACTCGTATCGCGAGAGGCGAGTTGAGCCTTAGGTCACATGCC
65 ATTTCTGTTGT-CAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
95546761 AAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
129 AAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * * *
95546800 --AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGG-CTTACGTGCTGAGCTATTT
1 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGAC--AC--GCTGAGGTAATT
* *
95546862 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
62 TCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAG
95546914 TTTCAGATCA
Statistics
Matches: 255, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
165 1 0.00
166 2 0.01
167 39 0.15
168 72 0.28
169 139 0.55
170 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (167 bp):
AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAA
GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
Found at i:95546861 original size:92 final size:91
Alignment explanation
Indices: 95546691--95546879 Score: 220
Period size: 92 Copynumber: 2.1 Consensus size: 91
95546681 GCTGAGGTAA
* *
95546691 TTTCAATTTCTGTTGTAAAAAAAAATCAACTCGTATCGCGAGAGGCGAGTTGAGCCTTAGGTCAC
1 TTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAACCTTAGGTCAC
* *
95546756 ATGCCAAGGTATTTTCAATTTCCGTT
66 ATGCCAAGCTATTTTCAATTTCCGTC
* * * *
95546782 TTTCAATTTCTGCCTT-TCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCTT-GGCT
1 TTTCAATTTCTG--TTGTAAAAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAACCTTAGG-T
* * ** *
95546845 TACGTGCTGAGCTATTTTCAATTTCTGTC
63 CACATGCCAAGCTATTTTCAATTTCCGTC
95546874 TTTCAA
1 TTTCAA
95546880 AAAAATCAAC
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
91 14 0.17
92 66 0.80
93 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (91 bp):
TTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATCGCGAGAGGCGAGTTGAACCTTAGGTCAC
ATGCCAAGCTATTTTCAATTTCCGTC
Found at i:95546938 original size:77 final size:77
Alignment explanation
Indices: 95546780--95546993 Score: 225
Period size: 79 Copynumber: 2.7 Consensus size: 77
95546770 TCAATTTCCG
* * * * *
95546780 TTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGGCT
1 TTTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTAGAT
* ***
95546845 TACGTGCTGAGCTA
64 CACACACTGAGCTA
*
95546859 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATC
95546923 ACACACTGAAG-TA
65 ACACACTG-AGCTA
* * * * * *
95546936 TTTTTTCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAGTTGAGC
1 -TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
95546994 CTCGGGTCAC
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
76 3 0.03
77 42 0.37
78 20 0.18
79 49 0.43
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (77 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCA
CACACTGAGCTA
Found at i:95547004 original size:248 final size:241
Alignment explanation
Indices: 95546612--95547076 Score: 554
Period size: 248 Copynumber: 1.9 Consensus size: 241
95546602 CAATTTTCGT
*
95546612 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGG
1 TTTTCAATTTCTGCCTTTC--AAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGC
* * * * * **
95546677 ACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCGTATCGCGAGAGGCGAGTT
64 ACACACTGAAGTAATTTCAATTTATATTGTAAAAAAAAATCAACGCACATCGCGAGAGGCGAGTT
* ** *
95546742 GAGCCTTAGGTCACATGCCAAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
129 GAGCCTCAGGTCACATGCCAAGGTATTTTCAAAATCCGTTTTTCAAATTCTG-CTTTC---AAAA
* *
95546807 ATCGACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTTACGTGCTGAGCTA
190 ATCAACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTTACGTGCTGAGCTA
* * ** *
95546859 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT-A-AGC
* * ** * * *
95546923 ACACACTGAAGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAG
64 ACACACTGAAGTA--ATTTCAATTTATATTGTAAAAAAAAATCAACGCACATCGCGAGAGGCGAG
* * * * *
95546988 TTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAAT
127 TTGAGCCTCAGGTCACATGCCAAGGTATTTTCAAAATCCGTTTTTCAAATTCTGCTTTCAAAAAT
95547053 CAACTCATATTGCGAGAAGTGAGT
192 CAACTCATATTGCGAGAAGTGAGT
95547077 CAACTCATAT
Statistics
Matches: 183, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
244 64 0.35
245 1 0.01
246 12 0.07
247 22 0.12
248 84 0.46
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (241 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTAAGCAC
ACACTGAAGTAATTTCAATTTATATTGTAAAAAAAAATCAACGCACATCGCGAGAGGCGAGTTGA
GCCTCAGGTCACATGCCAAGGTATTTTCAAAATCCGTTTTTCAAATTCTGCTTTCAAAAATCAAC
TCATATTGCGAGAAGTGAGTTGAACCTTGGCTTACGTGCTGAGCTA
Found at i:95547034 original size:14 final size:13
Alignment explanation
Indices: 95547015--95547050 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
95547005 TGTCGAGGTA
95547015 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
95547028 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
95547042 TTTTCAAAA
1 TTTTCAAAA
95547051 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:95547084 original size:24 final size:24
Alignment explanation
Indices: 95547052--95547100 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
95547042 TTTTCAAAAA
95547052 TCAACTCATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
95547076 TCAACTCATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
95547100 T
1 T
95547101 TGAGCCTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (24 bp):
TCAACTCATATTGCGAGAAGTGAG
Found at i:95547213 original size:30 final size:30
Alignment explanation
Indices: 95547172--95547228 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
95547162 TCATATTGCG
95547172 AGAGGTGAGTTGAGAT-TTTTAATTTCTGCT
1 AGAGGTGAGTTGAG-TCTTTTAATTTCTGCT
*
95547202 AGAGTTGAGTTGAGTCTTTTAATTTCT
1 AGAGGTGAGTTGAGTCTTTTAATTTCT
95547229 ATTTTTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.23, C:0.07, G:0.25, T:0.46
Consensus pattern (30 bp):
AGAGGTGAGTTGAGTCTTTTAATTTCTGCT
Found at i:95547312 original size:277 final size:266
Alignment explanation
Indices: 95546811--95547352 Score: 705
Period size: 277 Copynumber: 2.0 Consensus size: 266
95546801 AAAAAAATCG
* *
95546811 ACTCATATTGCGAGAGGTGAGTTGAACCTTGGCTTACGTGCTGAGCTATTTTCAATTTCTGTCTT
1 ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTCTT
*
95546876 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACTGAAGTATTTTT
66 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACTGAAGTATCTTT
* * *
95546941 TCAATTTATATTTTTCAAAAAAATCAACGCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACAT
131 TCAATTTATATTTTTC-AAAAAATCAACGCACATTACGAGAGGTGAGTTGAGCCTCGAGTCACAT
* * **
95547006 GTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAA
195 ATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG-TTTCAAAAATCAACTCATATTGCGAGAA
95547071 GTGAGTCA
259 GTGAGTCA
* *
95547079 ACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTTT
1 ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACGTGCTGAGCTATTTTCAATTTC---TGT
* * * * *
95547144 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGATTTTTA-ATTTCTGCTAGAGTT
63 CTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG--TTTCAGA--TC-AC-ACA-CT
* * *
95547208 G-AGTTGAGTCTTTT-AATTTCTATTTTTC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAG
120 GAAG-T-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACGCACATTACGAGAGGTGAGTTGAG
* *
95547270 CCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAATCAACTT
182 CCTCGAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAATCAACTC
*
95547335 ATATTGCGAGAGGTGAGT
247 ATATTGCGAGAAGTGAGT
95547353 TGAGCCTTGG
Statistics
Matches: 237, Mismatches: 23, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
268 56 0.24
271 13 0.05
272 29 0.12
273 1 0.00
274 4 0.02
275 2 0.01
276 33 0.14
277 77 0.32
278 3 0.01
279 14 0.06
280 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (266 bp):
ACTCATATTGCGAGAAGTGAGTTGAACCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTCTT
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACTGAAGTATCTTT
TCAATTTATATTTTTCAAAAAATCAACGCACATTACGAGAGGTGAGTTGAGCCTCGAGTCACATA
TCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAATCAACTCATATTGCGAGAAGT
GAGTCA
Found at i:95548068 original size:20 final size:20
Alignment explanation
Indices: 95548051--95548099 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
95548041 TAAGCCCCCT
95548051 AAAAAAAACCTAACCCCCAA
1 AAAAAAAACCTAACCCCCAA
*
95548071 AAAAAAAACCTAA-CCCAAA
1 AAAAAAAACCTAACCCCCAA
95548090 AAAAAAAACC
1 AAAAAAAACC
95548100 AAGAAACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.67, C:0.29, G:0.00, T:0.04
Consensus pattern (20 bp):
AAAAAAAACCTAACCCCCAA
Found at i:95548073 original size:19 final size:19
Alignment explanation
Indices: 95548045--95548099 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
95548035 GCCCATTAAG
*
95548045 CCCCCTAAAAAAAACCTAA
1 CCCCCAAAAAAAAACCTAA
95548064 CCCCCAAAAAAAAAACCTAA
1 CCCCC-AAAAAAAAACCTAA
**
95548084 CCCAAAAAAAAAAACC
1 CCCCCAAAAAAAAACC
95548100 AAGAAACCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.60, C:0.35, G:0.00, T:0.05
Consensus pattern (19 bp):
CCCCCAAAAAAAAACCTAA
Done.