Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 334 of 444
Found at i:96455580 original size:40 final size:40
Alignment explanation
Indices: 96455519--96455682 Score: 206
Period size: 40 Copynumber: 4.1 Consensus size: 40
96455509 CGGAATTTAG
* ** *
96455519 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
*
96455559 CCGGGTATAGA-AACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAAC
*
96455599 CCAGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * * *
96455639 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
96455679 CCGG
1 CCGG
96455683 GTATCATTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 106 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:96457511 original size:40 final size:40
Alignment explanation
Indices: 96457453--96457561 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 40
96457443 CTGTCACAAT
*
96457453 AAATGCCTTCGGGACTTAGCCCAGATATAGTTAC-TAGCAC
1 AAATGCCTTC-GGACTTAGCCCAGATATAGTCACTTAGCAC
* * * *
96457493 AAATGCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCAC
1 AAATGCCTTCGGA-CTTAGCCCAGATATAGTCACTTAGCAC
* * *
96457534 AAAAGCCTTCGGGACTTAGTCCGGATAT
1 AAATGCCTTC-GGACTTAGCCCAGATAT
96457562 CATTCGAGTA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.05
40 25 0.42
41 28 0.47
42 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (40 bp):
AAATGCCTTCGGACTTAGCCCAGATATAGTCACTTAGCAC
Found at i:96462136 original size:28 final size:28
Alignment explanation
Indices: 96462104--96462158 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
96462094 GATATGGCAT
*
96462104 TGGCATTGACCTACGATCCCATGTAAGA
1 TGGCATTGACATACGATCCCATGTAAGA
* **
96462132 TGGCATTGATATGTGATCCCATGTAAG
1 TGGCATTGACATACGATCCCATGTAAG
96462159 GCCATGTCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (28 bp):
TGGCATTGACATACGATCCCATGTAAGA
Found at i:96462234 original size:43 final size:43
Alignment explanation
Indices: 96462147--96462234 Score: 97
Period size: 43 Copynumber: 2.0 Consensus size: 43
96462137 TTGATATGTG
* * * *
96462147 ATCCCATGTAAGGCCATGTCTGGGACATTGAGTTGACATTGAT
1 ATCCCATATAAGACCATGTCTGGGACATTGAATTGACATCGAT
* **
96462190 ATCCCATATAAGACCATGTTTGGGACA-TGACATTGGTATCGAT
1 ATCCCATATAAGACCATGTCTGGGACATTGA-ATTGACATCGAT
96462233 AT
1 AT
96462235 GTGATCCCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
ATCCCATATAAGACCATGTCTGGGACATTGAATTGACATCGAT
Found at i:96463327 original size:43 final size:43
Alignment explanation
Indices: 96463279--96463385 Score: 189
Period size: 43 Copynumber: 2.5 Consensus size: 43
96463269 GGGCACGACT
96463279 ATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGGC
1 ATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGGC
*
96463322 ATGTGTCTCAACCGTGTGAAGGACACAGCCTTAGAACATGGGC
1 ATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGGC
96463365 ATGTG-CTCAAGCCGTGTGAAG
1 ATGTGTCTC-AGCCGTGTGAAG
96463386 TCTGCACTTA
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 3 0.05
43 58 0.95
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (43 bp):
ATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGGC
Found at i:96464143 original size:3 final size:3
Alignment explanation
Indices: 96464137--96464205 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
96464127 CTTGTTACAC
96464137 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
96464185 ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
96464206 GAGTTTCTGT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:96466842 original size:39 final size:39
Alignment explanation
Indices: 96466793--96466915 Score: 140
Period size: 39 Copynumber: 3.1 Consensus size: 39
96466783 ACATTGTAAC
*
96466793 ATATGCTTGAACGTTATGTAATTATATGAGTATTGTGAT
1 ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGAT
* *
96466832 ATATGTTTGAATC-TTATGTGATTATATGAGTATTCTGAT
1 ATATGCTTGAA-CGTTATGTGATTATATGAGTATTGTGAT
* * * * * *
96466871 ACATGCTTAAATGTTATATGATTATATGTGTAGTGTGATT
1 ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGA-T
96466911 ATATG
1 ATATG
96466916 TATAATGTGA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 63 0.91
40 6 0.09
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.46
Consensus pattern (39 bp):
ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGAT
Found at i:96466911 original size:17 final size:17
Alignment explanation
Indices: 96466889--96466931 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
96466879 AAATGTTATA
* *
96466889 TGATTATATGTGTAGTG
1 TGATTATATGTATAATG
96466906 TGATTATATGTATAATG
1 TGATTATATGTATAATG
96466923 TGA-TATATG
1 TGATTATATG
96466932 CCTAAAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (17 bp):
TGATTATATGTATAATG
Found at i:96471102 original size:49 final size:49
Alignment explanation
Indices: 96471037--96471447 Score: 696
Period size: 49 Copynumber: 8.4 Consensus size: 49
96471027 TTTACCACAT
*
96471037 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
96471086 ATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
96471135 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
96471184 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
96471233 ATATATACACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
96471282 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
96471331 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
96471380 ATATACATACACTTTCATATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
96471429 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
96471448 AATTTTAATA
Statistics
Matches: 338, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 338 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:96485739 original size:29 final size:28
Alignment explanation
Indices: 96485707--96485805 Score: 94
Period size: 29 Copynumber: 3.5 Consensus size: 28
96485697 GGGACGAGAT
* *
96485707 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
96485736 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
96485765 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
96485794 TGGCACTA-TGTG
1 TGGCACTAGTGTG
96485806 ACAGCCCAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 4 0.07
28 4 0.07
29 51 0.86
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:96487507 original size:29 final size:29
Alignment explanation
Indices: 96487474--96487634 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
96487464 GTGACGAGAT
96487474 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
96487503 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
96487532 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
96487561 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
96487590 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
96487619 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
96487635 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:96497065 original size:29 final size:28
Alignment explanation
Indices: 96497033--96497135 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
96497023 GGGACGAGAT
* *
96497033 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
96497062 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
96497091 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
96497120 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96497136 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:96499880 original size:21 final size:22
Alignment explanation
Indices: 96499851--96499892 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
96499841 TTTACGTCGC
* *
96499851 AAAGGAAAAAGA-AATGGAATG
1 AAAGCAAAAAGATAAGGGAATG
96499872 AAAGCAAAAAGATAAGGGAAT
1 AAAGCAAAAAGATAAGGGAAT
96499893 TTCAAAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.62, C:0.02, G:0.26, T:0.10
Consensus pattern (22 bp):
AAAGCAAAAAGATAAGGGAATG
Found at i:96501713 original size:40 final size:40
Alignment explanation
Indices: 96501647--96501797 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
96501637 AAATTGAATG
* * *
96501647 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
96501686 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
96501726 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
96501766 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
96501798 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:96501811 original size:40 final size:40
Alignment explanation
Indices: 96501684--96501813 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
96501674 ATGCTGGAAA
* * *
96501684 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
96501724 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
96501764 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
96501804 TTATATCCGG
1 TTATATCCGG
96501814 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:96513112 original size:29 final size:28
Alignment explanation
Indices: 96513024--96513125 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
96513014 TACTCAATCA
* *
96513024 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
96513053 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
96513082 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
96513111 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
96513126 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:96521069 original size:29 final size:28
Alignment explanation
Indices: 96520980--96521079 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
96520970 TACTCAATCA
* *
96520980 CGCACACTTAGTGCCAT-GATTCAAGCC
1 CGCACACTTAGTGCCATACATTCAAGCT
* * *
96521007 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
96521035 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
96521064 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
96521080 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 17 0.29
28 22 0.37
29 20 0.34
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:96527668 original size:47 final size:47
Alignment explanation
Indices: 96527605--96527995 Score: 647
Period size: 47 Copynumber: 8.3 Consensus size: 47
96527595 GTATGAGATA
96527605 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
96527652 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
96527699 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
96527746 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
96527793 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
96527840 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
96527887 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * *
96527934 TATATATGTGATAAGGCCGAGTGGCCAATGCGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
96527981 TATAAATGTGATAAG
1 TATATATGTGATAAG
96527996 TCCCGAAGGG
Statistics
Matches: 325, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 325 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:96532945 original size:31 final size:31
Alignment explanation
Indices: 96532904--96532967 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
96532894 CCTTTTCATA
*
96532904 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
96532935 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
96532966 TT
1 TT
96532968 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:96533212 original size:24 final size:24
Alignment explanation
Indices: 96533160--96533348 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
96533150 GCTTTATCAT
*
96533160 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
96533185 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
96533209 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96533232 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96533256 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96533280 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
96533304 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96533327 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96533349 TCACTTCCTC
Statistics
Matches: 152, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.08
23 33 0.22
24 95 0.62
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:96533236 original size:47 final size:48
Alignment explanation
Indices: 96533159--96533349 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 48
96533149 TGCTTTATCA
* *
96533159 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
96533208 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
96533255 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
96533303 GATAACTGGGGCATAAGCCC-TTTAATAACT-GGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
96533349 T
1 T
96533350 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
46 16 0.12
47 53 0.40
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:96533260 original size:71 final size:72
Alignment explanation
Indices: 96533160--96533349 Score: 280
Period size: 71 Copynumber: 2.7 Consensus size: 72
96533150 GCTTTATCAT
* *
96533160 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
96533224 GCCC-TTTA
64 GCCCTTTTA
* * *
96533232 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
96533297 CCTTTTG
66 CCTTTTA
96533304 ATAACTGGGGCATAAGCCC-TTTAATAACT-GGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
96533350 CACTTCCTCC
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
70 16 0.15
71 59 0.55
72 33 0.31
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:96533425 original size:20 final size:20
Alignment explanation
Indices: 96533402--96533444 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
96533392 GAACATCTCG
96533402 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
96533422 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
96533442 TGT
1 TGT
96533445 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:96533509 original size:25 final size:25
Alignment explanation
Indices: 96533481--96533528 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96533471 ATGTATAAAC
* * *
96533481 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
96533506 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
96533529 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:96534797 original size:27 final size:27
Alignment explanation
Indices: 96534768--96535134 Score: 443
Period size: 27 Copynumber: 13.6 Consensus size: 27
96534758 GGGTATTTTA
* * *
96534768 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
96534795 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
96534822 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
96534849 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
96534876 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * * *
96534903 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
96534930 GTAATTATGTAAAT-TAGGGGTAAAATG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
96534957 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
96534984 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* *
96535011 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
96535038 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
96535065 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
96535092 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
*
96535119 GTAATTCTGTAAATCG
1 GTAATTCTATAAATCG
96535135 GGAGTACTTT
Statistics
Matches: 298, Mismatches: 36, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 293 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:96551139 original size:13 final size:13
Alignment explanation
Indices: 96551123--96551155 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96551113 TTTAATTAAA
*
96551123 TTAGTTAATTAGT
1 TTAGATAATTAGT
96551136 TTAGATAATTAGT
1 TTAGATAATTAGT
96551149 TTA-ATAA
1 TTAGATAA
96551156 AAAAAATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:96554982 original size:18 final size:19
Alignment explanation
Indices: 96554947--96554985 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
96554937 CTCTCCGCGT
96554947 CACACACCCGTGCTCACCAC
1 CACACACCCGTGC-CACCAC
*
96554967 CACACGCCCGTG-CACCAC
1 CACACACCCGTGCCACCAC
96554985 C
1 C
96554986 TTACAACAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.23, C:0.56, G:0.13, T:0.08
Consensus pattern (19 bp):
CACACACCCGTGCCACCAC
Found at i:96556041 original size:17 final size:18
Alignment explanation
Indices: 96555999--96556047 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
96555989 AGTTGAAAAG
96555999 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
96556018 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
96556035 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
96556048 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:96556936 original size:40 final size:40
Alignment explanation
Indices: 96556870--96557036 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
96556860 AAATTGAATG
* * *
96556870 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
96556909 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
96556949 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
96556989 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
96557029 ATATCCGG
1 ATATCCGG
96557037 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:96559713 original size:16 final size:16
Alignment explanation
Indices: 96559692--96559737 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
96559682 TCCTCCTATT
96559692 TTTTTATTTATTCTTA
1 TTTTTATTTATTCTTA
96559708 TTTTTATTTTATT-TTA
1 TTTTTA-TTTATTCTTA
*
96559724 TTTTTCTTT-TTCTT
1 TTTTTATTTATTCTT
96559738 TTGATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 2 0.07
15 5 0.19
16 14 0.52
17 6 0.22
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTATTTATTCTTA
Found at i:96559718 original size:17 final size:16
Alignment explanation
Indices: 96559692--96559776 Score: 77
Period size: 17 Copynumber: 5.2 Consensus size: 16
96559682 TCCTCCTATT
96559692 TTTTTA-TTTATTCTTA
1 TTTTTATTTTATT-TTA
96559708 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
* *
96559724 TTTTTCTTTTTCTTTTGA
1 TTTTT-ATTTTATTTT-A
*
96559742 TTTTTATTTTCATTTCA
1 TTTTTATTTT-ATTTTA
*
96559759 ATTTTA--TTATTTTA
1 TTTTTATTTTATTTTA
96559773 TTTT
1 TTTT
96559777 GAAAGACATA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
14 8 0.14
15 2 0.04
16 14 0.25
17 24 0.42
18 9 0.16
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:96559746 original size:7 final size:6
Alignment explanation
Indices: 96559688--96559756 Score: 63
Period size: 6 Copynumber: 11.8 Consensus size: 6
96559678 TGAATCCTCC
* *
96559688 TATTTT T-TTATT TATTCT TATTTT TA-TTT TA-TTT TATTTT TCTTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * *
96559734 TCTTTT GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTTT TATTT
96559757 CAATTTTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 12 0.23
6 39 0.74
7 2 0.04
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:96559751 original size:12 final size:11
Alignment explanation
Indices: 96559688--96559776 Score: 63
Period size: 12 Copynumber: 7.5 Consensus size: 11
96559678 TGAATCCTCC
*
96559688 TATTTTTTTATT
1 TATTTTATT-TT
96559700 TATTCTTATTTT
1 TATT-TTATTTT
96559712 TATTTTA-TTT
1 TATTTTATTTT
*
96559722 TATTTTTCTTTT
1 TA-TTTTATTTT
*
96559734 TCTTTTGATTTT
1 TATTTT-ATTTT
*
96559746 TATTTTCATTTC
1 TATTTT-ATTTT
*
96559758 AATTTTATTATTT
1 TATTTTA-T-TTT
96559771 TATTTT
1 TATTTT
96559777 GAAAGACATA
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
10 5 0.08
11 12 0.20
12 33 0.54
13 11 0.18
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:96571256 original size:44 final size:39
Alignment explanation
Indices: 96571219--96571301 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
96571209 TAAATGCAAA
* *
96571219 ACACATATTAATGATGTGCAAACTATGACATTGTTAAAG
1 ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
* * *
96571258 ACTCATATTAATAATGTTCAAACTATGACATAATTAAAG
1 ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
96571297 ACACA
1 ACACA
96571302 AGCTAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (39 bp):
ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
Found at i:96576186 original size:24 final size:24
Alignment explanation
Indices: 96576134--96576323 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
96576124 GCTTTATCAT
*
96576134 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
96576159 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
96576183 ATAACTGGGGCGTAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96576206 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96576230 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96576254 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
96576278 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96576301 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96576324 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 44 0.29
24 97 0.63
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:96576210 original size:47 final size:48
Alignment explanation
Indices: 96576133--96576324 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 48
96576123 TGCTTTATCA
* *
96576133 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
* *
96576182 TATAACTGGGGCGTAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
96576229 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
96576277 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
96576324 T
1 T
96576325 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
47 69 0.52
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:96576234 original size:71 final size:72
Alignment explanation
Indices: 96576134--96576324 Score: 280
Period size: 71 Copynumber: 2.7 Consensus size: 72
96576124 GCTTTATCAT
* * *
96576134 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCGTAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
96576198 GCCC-TTTA
64 GCCCTTTTA
* * *
96576206 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
96576271 CCTTTTG
66 CCTTTTA
96576278 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
96576325 CACTTCCTCC
Statistics
Matches: 108, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 75 0.69
72 33 0.31
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:96576400 original size:20 final size:20
Alignment explanation
Indices: 96576377--96576419 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
96576367 GAACATCTCG
96576377 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
96576397 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
96576417 TGT
1 TGT
96576420 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:96576502 original size:25 final size:25
Alignment explanation
Indices: 96576456--96576503 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
96576446 ATATATAAAC
* * * *
96576456 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
96576481 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
96576504 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:96577692 original size:27 final size:26
Alignment explanation
Indices: 96577657--96577734 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
96577647 GGGCATATTC
96577657 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
96577684 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
96577711 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ATAGGGGTATT
96577735 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.10
27 35 0.83
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:96577805 original size:27 final size:27
Alignment explanation
Indices: 96577779--96578031 Score: 145
Period size: 27 Copynumber: 9.3 Consensus size: 27
96577769 ATCTACAAAC
*
96577779 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
96577806 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
96577835 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
96577862 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * ***
96577889 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
96577915 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *** *
96577943 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * *
96577970 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* *** * *
96577997 CGAGGGTAAAACTGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
96578024 CAAGGGTA
1 CAAGGGTA
96578032 AAACGGTAAT
Statistics
Matches: 179, Mismatches: 37, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.02
27 146 0.82
28 11 0.06
29 17 0.09
30 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:96578032 original size:27 final size:26
Alignment explanation
Indices: 96577929--96578131 Score: 237
Period size: 27 Copynumber: 7.6 Consensus size: 26
96577919 GGGTATTTTA
* *
96577929 GTAATTTTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCAAGGGTAAAAC
*
96577955 AGTAATTCTGTAAATCAAGGGTAAAATA
1 -GTAATTCTGTAAATCAAGGGTAAAA-C
* *
96577983 GTAATTCTATAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCAAGGGTAAAAC
96578009 TGTAATTCTGTAAATCAAGGGTAAAAC
1 -GTAATTCTGTAAATCAAGGGTAAAAC
* *
96578036 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 -GTAATTCTGTAAATCAAGGGTAAAAC
* *
96578063 GATAATTATGTAAATCAGGGGTAAAAC
1 G-TAATTCTGTAAATCAAGGGTAAAAC
* *
96578090 GGTAATTATGTAAATC-GGGGTAAAAC
1 -GTAATTCTGTAAATCAAGGGTAAAAC
96578116 GATAATTCTGTAAATC
1 G-TAATTCTGTAAATC
96578132 GGGGTACTTT
Statistics
Matches: 155, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.01
26 24 0.15
27 129 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (26 bp):
GTAATTCTGTAAATCAAGGGTAAAAC
Found at i:96578032 original size:54 final size:54
Alignment explanation
Indices: 96577928--96578131 Score: 288
Period size: 54 Copynumber: 3.8 Consensus size: 54
96577918 AGGGTATTTT
* *
96577928 AGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAAGGGTAAAAC
*
96577982 AGTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAAGGGTAAAAC
* * * *
96578036 GGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAAC
* *
96578090 GGTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
96578132 GGGGTACTTT
Statistics
Matches: 136, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
53 25 0.18
54 111 0.82
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAAC
Found at i:96578205 original size:28 final size:28
Alignment explanation
Indices: 96578143--96578233 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
96578133 GGGTACTTTG
* * *
96578143 GTAATTTTACAAGTCGAAGGTA-TTTCA
1 GTAATTTTACAAATTGAGGGTATTTTCA
96578170 GTAATTTTACAAATTGAGGGTATTTTCA
1 GTAATTTTACAAATTGAGGGTATTTTCA
* * * *
96578198 GTATTTTTACAAACTAAGGGTA-TTTCG
1 GTAATTTTACAAATTGAGGGTATTTTCA
96578225 GTAATTTTA
1 GTAATTTTA
96578234 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 31 0.56
28 24 0.44
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.42
Consensus pattern (28 bp):
GTAATTTTACAAATTGAGGGTATTTTCA
Found at i:96578239 original size:28 final size:27
Alignment explanation
Indices: 96578143--96578242 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 27
96578133 GGGTACTTTG
* *
96578143 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAA-ACTAAGGGTATTTCA
* *
96578170 GTAATTTTACAAATTGAGGGTATTTTCA
1 GTAATTTTACAAACTAAGGGTA-TTTCA
* *
96578198 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
*
96578225 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
96578243 AGTATTCTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 28 0.47
28 31 0.52
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:96579383 original size:40 final size:41
Alignment explanation
Indices: 96579230--96579394 Score: 185
Period size: 40 Copynumber: 4.1 Consensus size: 41
96579220 GGGGTGTTAC
** *
96579230 ATCCGGGCTAAGTCCCGAAGGGTTTTGTGCTAG-TGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACTAT
* *
96579270 ATCCAGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACTAT
* * * *
96579310 ATCCGGGCTATGTCCCAAAGGCATTTCTACGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACTAT
* * * *
96579350 ATCCGGGCCAAGACCTGAAGGCATTTGTGCGAGTTG-TTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACTAT
96579390 ATCCG
1 ATCCG
96579395 ACTCAATCCC
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
40 103 0.97
41 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGACTAT
Found at i:96581291 original size:21 final size:21
Alignment explanation
Indices: 96581267--96581337 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
96581257 TTCGGGTACT
96581267 CGATGAGCTATCTTGCACACC
1 CGATGAGCTATCTTGCACACC
*** * *
96581288 CGATGAGTGCCTAAAGTGTAC-TC
1 CGATGA--G-CTATCTTGCACACC
96581311 -GATGAGCTATCTTGCACACC
1 CGATGAGCTATCTTGCACACC
96581331 CGATGAG
1 CGATGAG
96581338 TGCCTAAAGT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
19 7 0.20
20 2 0.06
21 12 0.34
22 5 0.14
23 2 0.06
24 7 0.20
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (21 bp):
CGATGAGCTATCTTGCACACC
Found at i:96581323 original size:43 final size:43
Alignment explanation
Indices: 96581262--96581352 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
96581252 CACTATTCGG
96581262 GTACTCGATGAGCTATCTTGCACACCCGATGAGTGCCTAAAGT
1 GTACTCGATGAGCTATCTTGCACACCCGATGAGTGCCTAAAGT
96581305 GTACTCGATGAGCTATCTTGCACACCCGATGAGTGCCTAAAGT
1 GTACTCGATGAGCTATCTTGCACACCCGATGAGTGCCTAAAGT
96581348 GTACT
1 GTACT
96581353 ATCTCCTTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (43 bp):
GTACTCGATGAGCTATCTTGCACACCCGATGAGTGCCTAAAGT
Found at i:96582711 original size:16 final size:16
Alignment explanation
Indices: 96582690--96582722 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
96582680 ATGACAAAGA
96582690 GTTAGAAAAGAAACCT
1 GTTAGAAAAGAAACCT
96582706 GTTAGAAAAGAAACCT
1 GTTAGAAAAGAAACCT
96582722 G
1 G
96582723 AATCTGTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.18
Consensus pattern (16 bp):
GTTAGAAAAGAAACCT
Found at i:96587609 original size:40 final size:40
Alignment explanation
Indices: 96587554--96587774 Score: 254
Period size: 40 Copynumber: 5.5 Consensus size: 40
96587544 TATTCGAATG
* *
96587554 ATATCCGGACTAAGTCCTGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCT
* *
96587594 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCT-AG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTG-CT
96587634 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-A-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTG-CT
*
96587674 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCT
* * * * * *
96587714 ATATTCGGACCAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCT
* *
96587754 ATATCC-AGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
96587775 ATGCTTGGGT
Statistics
Matches: 160, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
39 12 0.08
40 144 0.90
41 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCT
Found at i:96587687 original size:80 final size:81
Alignment explanation
Indices: 96587554--96587774 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 81
96587544 TATTCGAATG
* *
96587554 ATATCCGGACTAAGTCCTGAAGGCATTTGTG-TGAGTTGCTATATCCGGGCTAAGTCCTGAAGGC
1 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
* *
96587618 TTTTGTGCTAG-TGACT
66 ATTTGTGCGAGTTG-CT
*
96587634 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-A-TTGACTATATCCGGGCTAAGTCCCGAAGG
1 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTG-CTATATCCGGGCTAAGTCCCGAAGG
96587697 CATTTGTGCGAGTTGCT
65 CATTTGTGCGAGTTGCT
* * * * * *
96587714 ATATTCGGACCAAGACCCGAAGGCATTTGTGC-GAGTTGTTATATCC-AGCTAAATCCCGAAG
1 ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTGCTATATCCGGGCTAAGTCCCGAAG
96587775 ATGCTTGGGT
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
79 16 0.13
80 102 0.82
81 6 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (81 bp):
ATATCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTGCTATATCCGGGCTAAGTCCCGAAGGC
ATTTGTGCGAGTTGCT
Found at i:96590320 original size:17 final size:16
Alignment explanation
Indices: 96590300--96590338 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
96590290 CACTATCTTT
96590300 TCTTTCTTCAATTTCTC
1 TCTTTCTTCAATTT-TC
96590317 TCTTT-TTCAATTTTC
1 TCTTTCTTCAATTTTC
96590332 T-TTTCTT
1 TCTTTCTT
96590339 GTTCACATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 3 0.14
15 5 0.24
16 8 0.38
17 5 0.24
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (16 bp):
TCTTTCTTCAATTTTC
Found at i:96597351 original size:28 final size:29
Alignment explanation
Indices: 96597292--96597351 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
96597282 ATTTATTTCA
*
96597292 CAATTTAACCCCTCAATTTACACTTTTTT
1 CAATTTAACCCCTCAATTGACACTTTTTT
*
96597321 CAATTTAATCCCT-AATTGACA-TTTTTGT
1 CAATTTAACCCCTCAATTGACACTTTTT-T
96597349 CAA
1 CAA
96597352 AAATCACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 5 0.18
28 11 0.39
29 12 0.43
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.43
Consensus pattern (29 bp):
CAATTTAACCCCTCAATTGACACTTTTTT
Found at i:96599067 original size:24 final size:24
Alignment explanation
Indices: 96599035--96599094 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
96599025 GAATCCAATA
* * *
96599035 CACTATGTGTGCG-GTTTACTATGG
1 CACTATGTGTGCGAGTGTAAT-TAG
96599059 CACTATGTGTGCGAGTGTAATTAG
1 CACTATGTGTGCGAGTGTAATTAG
96599083 CACTATGTGTGC
1 CACTATGTGTGC
96599095 AAATACAGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 27 0.84
25 5 0.16
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (24 bp):
CACTATGTGTGCGAGTGTAATTAG
Found at i:96612633 original size:13 final size:13
Alignment explanation
Indices: 96612615--96612639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96612605 ATGCAATCGC
96612615 ACACGAGCGTGTT
1 ACACGAGCGTGTT
96612628 ACACGAGCGTGT
1 ACACGAGCGTGT
96612640 CCTTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGAGCGTGTT
Found at i:96617918 original size:78 final size:80
Alignment explanation
Indices: 96617735--96617957 Score: 314
Period size: 78 Copynumber: 2.8 Consensus size: 80
96617725 TCGAATGATG
* * * * *
96617735 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
96617798 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
*
96617815 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAA-GCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
96617878 GTGC-AGTTACTAAA
66 GTGCGAGTTACTAAA
*
96617892 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
96617956 TG
65 TG
96617958 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
77 22 0.17
78 51 0.39
79 39 0.30
80 18 0.14
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:96617971 original size:40 final size:40
Alignment explanation
Indices: 96617735--96617957 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
96617725 TCGAATGATG
* * * *
96617735 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
96617775 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
96617815 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
96617854 TCCGGGTTAAGTCCCGAA-GCATTTGTGC-AGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
96617892 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
96617933 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
96617958 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 28 0.17
39 60 0.36
40 71 0.42
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96617979 original size:117 final size:118
Alignment explanation
Indices: 96617735--96617980 Score: 306
Period size: 117 Copynumber: 2.1 Consensus size: 118
96617725 TCGAATGATG
* *
96617735 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-AAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* **
96617800 GTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
65 GTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAA
* **
96617854 TCCGGGTTAAGTCCCGAA-GCATTTGTGC-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* *
96617916 TGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-CTAAA
96617972 TCC-GGTTAA
1 TCCGGGTTAA
96617981 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
116 1 0.01
117 59 0.53
118 28 0.25
119 24 0.21
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:96624722 original size:60 final size:57
Alignment explanation
Indices: 96624600--96624722 Score: 133
Period size: 57 Copynumber: 2.1 Consensus size: 57
96624590 TGAGTTGAGG
** * *
96624600 GAAAG-AAGAAAAAAAAAGTGTCCATCATTTTTCACTTCTTTTGGTGAAAGTTCTAA
1 GAAAGAAAGAAAAAAAAAGTGTCCATCATTTTTCACTTCTTTTGCCGAAAATTCAAA
* * *
96624656 GGAAGAAAGAAAAAAAATGTGTCCATCCTTTTTC-CATTCTTCTTGACCGAAAATTCAAAA
1 GAAAGAAAGAAAAAAAAAGTGTCCATCATTTTTCAC-TTCTT-TTG-CCGAAAATTC-AAA
96624716 GAAAGAA
1 GAAAGAA
96624723 GGGAGGAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
56 5 0.09
57 31 0.57
58 3 0.06
59 7 0.13
60 8 0.15
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (57 bp):
GAAAGAAAGAAAAAAAAAGTGTCCATCATTTTTCACTTCTTTTGCCGAAAATTCAAA
Found at i:96626193 original size:39 final size:40
Alignment explanation
Indices: 96626006--96626229 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
96625996 TCGAATGATG
* * *
96626006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
96626046 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96626086 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96626126 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96626166 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
96626206 -CCGGGCTATGTCCC-AAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96626230 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 44 0.27
40 114 0.69
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96629288 original size:25 final size:24
Alignment explanation
Indices: 96629239--96629432 Score: 216
Period size: 25 Copynumber: 8.0 Consensus size: 24
96629229 TGCTTTACCA
*
96629239 TATAACTGGAGGCCT-AG-CCTCTTT
1 TATAACTGG-GGCATAAGCCCT-TTT
* *
96629263 TAGTAACTGGGGCAAAAACCCTTTT
1 TA-TAACTGGGGCATAAGCCCTTTT
*
96629288 TATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTT-TT
*
96629313 CATAACTGGGGCATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCCTTT-T
* *
96629338 CATAACTGGGACATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCCTTT-T
*
96629363 CATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
96629386 AATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
96629409 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
96629433 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
23 43 0.28
24 28 0.18
25 79 0.52
26 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:96629394 original size:23 final size:23
Alignment explanation
Indices: 96629261--96629431 Score: 225
Period size: 25 Copynumber: 7.1 Consensus size: 23
96629251 CCTAGCCTCT
* * *
96629261 TTTAGTAACTGGGGCAAAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
96629284 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
96629308 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
*
96629333 TTTATCATAACTGGGACATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
96629358 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
96629383 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96629406 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96629429 TTT
1 TTT
96629432 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 48 0.36
24 19 0.14
25 68 0.50
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:96629504 original size:9 final size:9
Alignment explanation
Indices: 96629490--96629546 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
96629480 ATCTCATGTG
96629490 CATATCATA
1 CATATCATA
*
96629499 CATATCATGTG
1 CATATCA--TA
96629510 CATATCATA
1 CATATCATA
* *
96629519 CATGTCATGTG
1 CATATCA--TA
96629530 CATATCATA
1 CATATCATA
96629539 CATATCAT
1 CATATCAT
96629547 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:96629506 original size:20 final size:20
Alignment explanation
Indices: 96629478--96629548 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
96629468 GCATTTATGA
*
96629478 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96629498 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
96629518 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96629538 ACATATCATGT
1 ACATATCATGT
96629549 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:96629513 original size:11 final size:11
Alignment explanation
Indices: 96629483--96629537 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96629473 TATGAACATC
96629483 TCATGTGCATA
1 TCATGTGCATA
*
96629494 TCA--TACATA
1 TCATGTGCATA
96629503 TCATGTGCATA
1 TCATGTGCATA
* *
96629514 TCA--TACATG
1 TCATGTGCATA
96629523 TCATGTGCATA
1 TCATGTGCATA
96629534 TCAT
1 TCAT
96629538 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:96629613 original size:25 final size:25
Alignment explanation
Indices: 96629585--96629632 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96629575 ATATATAAAC
* * *
96629585 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
96629610 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
96629633 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:96630821 original size:27 final size:26
Alignment explanation
Indices: 96630791--96630868 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
96630781 AGGCATATTC
96630791 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
* *
96630818 GTCACTTTACCTTACAGAGGCT-TTACG
1 GTCATTTTACC-TACAG-GGGTATTACG
* *
96630845 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
96630869 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.10
27 34 0.83
28 3 0.07
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:96631137 original size:27 final size:27
Alignment explanation
Indices: 96630886--96631192 Score: 156
Period size: 27 Copynumber: 11.3 Consensus size: 27
96630876 TTTCATCCTA
* * * * * *
96630886 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
96630913 CAAGGGTATTTCAGTAATTTTGTTAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
96630940 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
96630969 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
96630996 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * ** * * *
96631023 TGAGGATATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
96631050 CAAGGGTATTTT-GATAATTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* *
96631076 CTAGGGGTATTTTGGTAATTTTATAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
96631103 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *** * *
96631131 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*** *
96631158 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
96631185 CGAGGGTA
1 CAAGGGTA
96631193 AAACTGTAAT
Statistics
Matches: 224, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.01
27 191 0.85
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:96631165 original size:81 final size:81
Alignment explanation
Indices: 96631088--96631381 Score: 268
Period size: 81 Copynumber: 3.6 Consensus size: 81
96631078 AGGGGTATTT
** * **
96631088 TGGTAATTTTATAAA-CTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCT
1 TGGTAATTTTATAAATC-AAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT
*
96631152 GTAAATCAAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* * * * * *
96631169 TAGTAATTCTATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTTTATAAATCAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTG
*
96631234 TAAGTCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * * * * *
96631250 CGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACGGTAATTCTG
1 TGGTAATTTTATAAATCAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTG
* ***
96631315 TAAATCGGGGGTACTT
66 TAAATCGAGGGTAAAA
* * ** **
96631331 TGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTA
1 TGGTAATTTTATAAATC-AAGGGTAAATCAGTAATTTTGTAAATCGAGGGTA
96631382 TTTCAGTATT
Statistics
Matches: 168, Mismatches: 43, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
81 166 0.99
82 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.32
Consensus pattern (81 bp):
TGGTAATTTTATAAATCAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:96631193 original size:27 final size:27
Alignment explanation
Indices: 96631115--96631327 Score: 243
Period size: 27 Copynumber: 7.9 Consensus size: 27
96631105 AAGGGTATTT
*
96631115 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
96631142 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
96631169 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
96631196 CT-GTAATTCTGTAAATCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
** *
96631223 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
96631250 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** * *
96631277 CGGTAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
96631304 CGGTAATTCTGTAAATCGGGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
96631328 CTTTGGTAAT
Statistics
Matches: 167, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
26 2 0.01
27 163 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:96631327 original size:54 final size:54
Alignment explanation
Indices: 96631117--96631320 Score: 282
Period size: 54 Copynumber: 3.8 Consensus size: 54
96631107 GGGTATTTTA
* ** **
96631117 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * *
96631171 GTAATTCTATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * *
96631225 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* *
96631279 GTAATTATGTAAATCGGGGGTAAAACGGTAATTCTGTAAATC
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC
96631321 GGGGGTACTT
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 131 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
Found at i:96631354 original size:27 final size:27
Alignment explanation
Indices: 96631333--96631422 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
96631323 GGGTACTTTG
*
96631333 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
96631360 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
96631387 GTATTTTTACAAA-CTAAGGGTATTTCA
1 GTAATTTTACAAATCGAA-GGTATTTCA
96631414 GTAATTTTA
1 GTAATTTTA
96631423 GTAAACTAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.04
27 54 0.96
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:96631364 original size:54 final size:54
Alignment explanation
Indices: 96631306--96631419 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
96631296 GGGTAAAACG
** * * *
96631306 GTAATTCTGTAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTCTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCA
* * *
96631360 GTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCA
1 GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCA
96631414 GTAATT
1 GTAATT
96631420 TTAGTAAACT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.12
54 44 0.88
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCA
Found at i:96631436 original size:27 final size:26
Alignment explanation
Indices: 96631333--96631437 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
96631323 GGGTACTTTG
* *
96631333 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAGGTATTTCA
* *
96631360 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAGGTATTTCA
*
96631387 GTATTTTTACAAACTAAGGGTATTTCA
1 GTAATTTTACAAACTAA-GGTATTTCA
* *
96631414 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAGGTATT
96631438 CTAAACATGG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 58 0.87
28 7 0.10
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAGGTATTTCA
Found at i:96634336 original size:25 final size:24
Alignment explanation
Indices: 96634288--96634505 Score: 273
Period size: 25 Copynumber: 9.0 Consensus size: 24
96634278 GCTTTACCAT
*
96634288 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* * *
96634312 AGTAACTGGGGCAAAAACCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
96634337 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
96634362 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
96634387 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
96634412 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
96634437 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
*
96634460 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
96634483 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96634506 GCACTTCCTC
Statistics
Matches: 176, Mismatches: 11, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
23 42 0.24
24 33 0.19
25 101 0.57
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:96634436 original size:75 final size:72
Alignment explanation
Indices: 96634309--96634504 Score: 304
Period size: 75 Copynumber: 2.7 Consensus size: 72
96634299 CCTAGCCTCT
* * * * *
96634309 TTTAGTAACTGGGGCAAAAACCCTTTTTATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCA
1 TTTAATAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTTATCATAACTAGGGCA
96634374 TAAGCCC
66 TAAGCCC
*
96634381 TTCATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTAGG
1 TT--TAATAACTGGGGCATAAGCCCTTTAT-ATAACTGGGGCATAAGCCCTTTATCATAACTAGG
96634446 GCATAAGCCC
63 GCATAAGCCC
96634456 TTTAATAACTGGGGCATAAGCCCTTTA-ATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTT
96634505 TGCACTTCCT
Statistics
Matches: 114, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
71 22 0.19
72 2 0.02
73 24 0.21
74 21 0.18
75 45 0.39
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (72 bp):
TTTAATAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTTATCATAACTAGGGCA
TAAGCCC
Found at i:96634577 original size:9 final size:9
Alignment explanation
Indices: 96634563--96634619 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
96634553 ATCTCATGTG
96634563 CATATCATA
1 CATATCATA
*
96634572 CATATCATGTG
1 CATATCA--TA
96634583 CATATCATA
1 CATATCATA
* *
96634592 CATGTCATGTG
1 CATATCA--TA
96634603 CATATCATA
1 CATATCATA
96634612 CATATCAT
1 CATATCAT
96634620 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:96634579 original size:20 final size:20
Alignment explanation
Indices: 96634551--96634621 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
96634541 GCATTTATGA
*
96634551 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96634571 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
96634591 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96634611 ACATATCATGT
1 ACATATCATGT
96634622 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:96634586 original size:11 final size:11
Alignment explanation
Indices: 96634556--96634610 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96634546 TATGAACATC
96634556 TCATGTGCATA
1 TCATGTGCATA
*
96634567 TCA--TACATA
1 TCATGTGCATA
96634576 TCATGTGCATA
1 TCATGTGCATA
* *
96634587 TCA--TACATG
1 TCATGTGCATA
96634596 TCATGTGCATA
1 TCATGTGCATA
96634607 TCAT
1 TCAT
96634611 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:96634686 original size:25 final size:25
Alignment explanation
Indices: 96634658--96634705 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96634648 ATATATAAAC
* * *
96634658 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
96634683 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
96634706 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:96635894 original size:27 final size:27
Alignment explanation
Indices: 96635864--96635926 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
96635854 AGGCATATTC
96635864 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
* *
96635891 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
96635918 GTCTTTTTA
1 GTCATTTTA
96635927 ACTAATAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:96636095 original size:27 final size:27
Alignment explanation
Indices: 96636065--96636197 Score: 137
Period size: 27 Copynumber: 4.9 Consensus size: 27
96636055 GTAACATTGT
96636065 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
96636092 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
96636119 AAACCAAGGGTATTTTGATAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
96636146 AAA-CTAGGGGTATTTTGGTAATTTTA-
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * *
96636172 AAAACTAAGGGTATTTTAGTAATTTT
1 AAATC-AGGGGTATTTTGGTAATTTT
96636198 GTAAATCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.06
27 84 0.94
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:96636130 original size:54 final size:54
Alignment explanation
Indices: 96636072--96636211 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
96636062 TGTAAATCAG
*
96636072 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCAAAAACCAA
* * * * *
96636126 GGGTATTTTGATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTAAAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCAAAAACCAA
* ** *
96636180 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
96636212 AAATAGTAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 70 0.97
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCAAAAACCAA
Found at i:96636209 original size:27 final size:27
Alignment explanation
Indices: 96635986--96636265 Score: 131
Period size: 27 Copynumber: 10.3 Consensus size: 27
96635976 ATCTACAAAC
* * *
96635986 CAAGGGTATTTCAGTAATTTTGTTAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
96636013 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-TAGTAATTTTGT--AAA-T
**
96636042 CAAGGGTATTTCT-GTAACATTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTGTAAAT
* * **
96636069 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
** ** *** *
96636096 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
**
96636123 CAAGGGTATTTT-GATAATTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTGTAAAT
* * * *
96636149 CTAGGGGTATTTTGGTAATTTT-AAAAA
1 C-AAGGGTATTTTAGTAATTTTGTAAAT
96636176 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTGTAAAT
* *** *
96636204 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*** * *
96636231 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
96636258 CGAGGGTA
1 CAAGGGTA
96636266 AAACTGTAAT
Statistics
Matches: 205, Mismatches: 36, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
26 7 0.03
27 169 0.82
28 11 0.05
29 17 0.08
30 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:96636266 original size:27 final size:27
Alignment explanation
Indices: 96636188--96636400 Score: 229
Period size: 27 Copynumber: 7.9 Consensus size: 27
96636178 AAGGGTATTT
*
96636188 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
96636215 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
96636242 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
96636269 CT-GTAATTCTGTAAATCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
*
96636296 CT-GTAATTCTGTAAGTCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
* *
96636323 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
** * * *
96636350 CGGTCATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
96636377 -CGATAATTCTGTAAATCGGGGGTA
1 TAG-TAATTCTGTAAATCGAGGGTA
96636401 CTTTGGTAAT
Statistics
Matches: 165, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.02
27 160 0.97
28 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:96636392 original size:54 final size:54
Alignment explanation
Indices: 96636189--96636400 Score: 259
Period size: 54 Copynumber: 3.9 Consensus size: 54
96636179 AGGGTATTTT
* * * *
96636189 AGTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAGGGGTAAAAC
*
96636243 AGTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATC-GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAG-GGGTAAAAC
* * *
96636297 TGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAAC
* * * * *
96636351 GGTCATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTA
96636401 CTTTGGTAAT
Statistics
Matches: 137, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 135 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAAC
Found at i:96636427 original size:27 final size:27
Alignment explanation
Indices: 96636406--96636495 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
96636396 GGGTACTTTG
*
96636406 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
96636433 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
96636460 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
96636487 GTAATTTTA
1 GTAATTTTA
96636496 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:96636447 original size:54 final size:54
Alignment explanation
Indices: 96636389--96636495 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
96636379 ATAATTCTGT
* * *
96636389 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
96636443 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
96636496 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:96636509 original size:27 final size:27
Alignment explanation
Indices: 96636406--96636510 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
96636396 GGGTACTTTG
* *
96636406 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
96636433 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
96636460 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
96636487 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
96636511 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:96637410 original size:48 final size:48
Alignment explanation
Indices: 96637349--96637830 Score: 811
Period size: 48 Copynumber: 10.0 Consensus size: 48
96637339 CAAGATAAAT
* * *
96637349 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
96637397 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
96637445 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
96637493 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
96637541 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
96637589 ATATGTATATGTGGTAAAGCCGAATGGCCAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
96637637 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
96637685 ATATGTATATGTGGTTAAGACGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
96637733 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
96637781 ATATATATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
96637829 AT
1 AT
96637831 GTGTGTATAT
Statistics
Matches: 409, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 409 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:96638021 original size:37 final size:37
Alignment explanation
Indices: 96637971--96638073 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
96637961 GGAAATATAT
*
96637971 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96638008 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
96638045 TTCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96638074 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96652499 original size:76 final size:74
Alignment explanation
Indices: 96652364--96652639 Score: 285
Period size: 76 Copynumber: 3.7 Consensus size: 74
96652354 AACGCAATCA
* * * * *
96652364 CTATTGTATTTTACATCAATAATATACTTATTTAGAATCTACGAAAACAA-TAGAAAAATTATTT
1 CTATTGTAATTTATATCAATAATATACTTATTTACAATATACGAAAAAAATTA-AAAAATTATTT
96652428 GTATTGTATT
65 GTATTGTATT
* * * *
96652438 CTATTGTAATTTATATCAATAATATTTATTTATTTACAATATATGAAAAAAATTTAAAAATTTTT
1 CTATTGTAATTTATATCAATAATA--TACTTATTTACAATATACGAAAAAAATTAAAAAATTATT
96652503 TGTATTGTATT
64 TGTATTGTATT
* * * *
96652514 TTATTGTATTTTATATCAATAATATATACTTATTTACAATCTA--AAAATACATTAAAAAATTAT
1 CTATTGTAATTTATATCAAT-A-ATATACTTATTTACAATATACGAAAA-AAATTAAAAAATTAT
*
96652577 TTGTATTATATT
63 TTGTATTGTATT
* * *
96652589 CTATTGT-ATGCCT-TCTC-ATAATATATTTATTTACAATATACGAAAAAAATT
1 CTATTGTAAT--TTATATCAATAATATACTTATTTACAATATACGAAAAAAATT
96652640 GTTTATATTG
Statistics
Matches: 168, Mismatches: 24, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
72 18 0.11
73 5 0.03
74 33 0.20
75 32 0.19
76 75 0.45
77 2 0.01
78 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (74 bp):
CTATTGTAATTTATATCAATAATATACTTATTTACAATATACGAAAAAAATTAAAAAATTATTTG
TATTGTATT
Found at i:96652637 original size:150 final size:149
Alignment explanation
Indices: 96652365--96652639 Score: 382
Period size: 151 Copynumber: 1.8 Consensus size: 149
96652355 ACGCAATCAC
* *
96652365 TATTGTATTTTACATCAATAATATACTTATTTAGAATCTACGAAAACAATAGAAAAATTATTTGT
1 TATTGTATTTTACATCAATAATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATTTGT
* * *
96652430 ATTGTATTCTATTGTAATTTATATCAATAATATTTATTTATTTACAATATATGAAAAAAATTTAA
66 ATTATATTCTATTGTAATCTATATCAATAATA-TTATTTATTTACAATATACGAAAAAAATTTAA
96652495 AAATTTTTTGTATTGTATTT
130 AAATTTTTTGTATTGTATTT
* *
96652515 TATTGTATTTTATATCAATAATATATACTTATTTACAATCTA-AAAATACATTA-AAAAATTATT
1 TATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTACAAAA-ACAATAGAAAAATTATT
*
96652578 TGTATTATATTCTATTGT-ATGCCT-TCTC-ATAATA-TATTTATTTACAATATACGAAAAAAAT
63 TGTATTATATTCTATTGTAAT--CTATATCAATAATATTATTTATTTACAATATACGAAAAAAAT
96652639 T
126 T
96652640 GTTTATATTG
Statistics
Matches: 112, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
148 27 0.24
150 26 0.23
151 34 0.30
152 25 0.22
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (149 bp):
TATTGTATTTTACATCAATAATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATTTGT
ATTATATTCTATTGTAATCTATATCAATAATATTATTTATTTACAATATACGAAAAAAATTTAAA
AATTTTTTGTATTGTATTT
Found at i:96652652 original size:140 final size:145
Alignment explanation
Indices: 96652364--96652703 Score: 385
Period size: 140 Copynumber: 2.3 Consensus size: 145
96652354 AACGCAATCA
* *
96652364 CTATTGTATTTTACATCAAT-A-ATATACTTATTTAGAATCTACGAAAACAATAGAAAAATTATT
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATT
* * *
96652427 TGTATTGTATTCTATTGTAATTTATATCAATAATATTTATTTATTTACAATATATGAAAAAAATT
66 TGTATTATATTCTATTGTAATCTATATCAATAATA-TTATTTATTTACAATATACG----AAA--
* *
96652492 TAAAAATTTTTTGTATTGTATT
124 TAAAAATTGTTTATATTGTATT
* * *
96652514 TTATTGTATTTTATATCAATAATATATACTTATTTACAATCTA-AAAATACATTA-AAAAATTAT
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACAAAA-ACAATAGAAAAATTAT
*
96652577 TTGTATTATATTCTATTGT-ATGCCT-TCTC-ATAATA-TATTTATTTACAATATACG-AA-AAA
65 TTGTATTATATTCTATTGTAAT--CTATATCAATAATATTATTTATTTACAATATACGAAATAAA
96652636 AATTGTTTATATTGTATT
128 AATTGTTTATATTGTATT
* * *
96652654 CTACTATATTTTACATCAATAATATATACTTATTTACAATTTACCAAAAA
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTA-CAAAAA
96652704 AAAGCAATGA
Statistics
Matches: 167, Mismatches: 16, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
140 57 0.34
141 1 0.01
142 4 0.02
143 2 0.01
148 18 0.11
150 26 0.16
151 34 0.20
152 25 0.15
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.46
Consensus pattern (145 bp):
CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATT
TGTATTATATTCTATTGTAATCTATATCAATAATATTATTTATTTACAATATACGAAATAAAAAT
TGTTTATATTGTATT
Found at i:96652664 original size:150 final size:149
Alignment explanation
Indices: 96652365--96652666 Score: 355
Period size: 150 Copynumber: 2.0 Consensus size: 149
96652355 ACGCAATCAC
* *
96652365 TATTGTATTTTACATCAATAATATACTTATTTAGAATCTACGAAAACAATAGAAAAATTATTTGT
1 TATTGTATTTTACATCAATAATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATTTGT
* * *
96652430 ATTGTATTCTATTGTAATTTATATCAATAATATTTATTTATTTACAATATATGAAAAAAATTTAA
66 ATTATATTCTATTGTAATCTATATCAATAATA-TTATTTATTTACAATATACGAAAAAAATTTAA
* * * *
96652495 AAATTTTTTGTATTGTATTT
130 AAATTTATTCTACTATATTT
* *
96652515 TATTGTATTTTATATCAATAATATATACTTATTTACAATCTA-AAAATACATTA-AAAAATTATT
1 TATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTACAAAA-ACAATAGAAAAATTATT
*
96652578 TGTATTATATTCTATTGT-ATGCCT-TCTC-ATAATA-TATTTATTTACAATATACGAAAAAAAT
63 TGTATTATATTCTATTGTAAT--CTATATCAATAATATTATTTATTTACAATATACGAAAAAAAT
** *
96652639 TGTTTATATTGTATTCTACTATATTT
126 T-TAAAAATT-TATTCTACTATATTT
96652665 TA
1 TA
96652667 CATCAATAAT
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
148 27 0.21
149 5 0.04
150 39 0.30
151 34 0.26
152 25 0.19
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.47
Consensus pattern (149 bp):
TATTGTATTTTACATCAATAATATACTTATTTACAATCTACAAAAACAATAGAAAAATTATTTGT
ATTATATTCTATTGTAATCTATATCAATAATATTATTTATTTACAATATACGAAAAAAATTTAAA
AATTTATTCTACTATATTT
Found at i:96657869 original size:40 final size:39
Alignment explanation
Indices: 96657704--96657887 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
96657694 AAATTGAATG
* * *
96657704 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
96657744 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
96657784 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
96657824 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
96657863 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
96657888 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:96657912 original size:80 final size:81
Alignment explanation
Indices: 96657744--96657932 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
96657734 GCTGGAAATT
* * * *
96657744 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
96657809 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
96657825 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
96657888 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
96657904 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
96657933 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:96661044 original size:50 final size:49
Alignment explanation
Indices: 96660938--96661120 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 49
96660928 CTGGTAGGCA
* * **
96660938 TAGTAGCCTGCACTTAGTACTACATATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACACG
* *
96660987 TAGTAGCCTACACTTAGTACTACACATGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAACAGTCTAATACACG
* * *** * *
96661037 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG---TCTAATACACG
*
96661088 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
96661121 TCACAATAGA
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 28 0.25
50 39 0.35
51 40 0.36
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACACG
Found at i:96661111 original size:101 final size:99
Alignment explanation
Indices: 96660938--96661124 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
96660928 CTGGTAGGCA
* * * *
96660938 TAGTAGCCTGCACTTAGTACTACATATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTA
*
96661003 GTACTACACATGTGACCTCACCATCTAATACACG
66 GTACTACACATGCGACCTCACCATCTAATACACG
* * * *
96661037 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTACAC
96661101 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACATGCGACCTCAC
96661125 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.38
101 43 0.57
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTA
GTACTACACATGCGACCTCACCATCTAATACACG
Found at i:96666328 original size:51 final size:48
Alignment explanation
Indices: 96666148--96666334 Score: 196
Period size: 50 Copynumber: 3.8 Consensus size: 48
96666138 GCCGAAGCTA
* * * *
96666148 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAG
* *
96666197 TCTGGTACACGTAGCAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-CAG
** * *
96666247 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
* *
96666295 TTTTCGGGTACACATAGTAGCCTGCATTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
96666335 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 36 0.31
50 41 0.35
51 35 0.30
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
Found at i:96666332 original size:101 final size:99
Alignment explanation
Indices: 96666159--96666345 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
96666149 CTGGTACGCA
* * * *
96666159 TAGTAGCCTGCACTTAGTACTACATATGCGACCAACAGTCTGGTACACGTAGCAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGCAGCCTGCACTTA
*
96666224 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
96666258 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACACATAGTAGCCTGCAT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGCAGCCTGCAC
*
96666322 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
96666346 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.39
101 42 0.56
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGCAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:96669106 original size:48 final size:48
Alignment explanation
Indices: 96669022--96669243 Score: 257
Period size: 48 Copynumber: 4.6 Consensus size: 48
96669012 GACATTTGGG
* * * * *
96669022 TGATATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* * * * *
96669070 TGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
** * * *
96669118 CAATATGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* *
96669166 TGATATGTA-CGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAA
1 TGATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* *
96669214 TGAGATGAGAGCTAGTGTAAGACCACGTCT
1 TGATATGAGAGCTAGTGTAAGACCATGTCT
96669244 AAGCCAATGT
Statistics
Matches: 144, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
47 1 0.01
48 142 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
Found at i:96669188 original size:96 final size:96
Alignment explanation
Indices: 96669024--96669244 Score: 309
Period size: 96 Copynumber: 2.3 Consensus size: 96
96669014 CATTTGGGTG
* * * * **
96669024 ATATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATGTGTGTGCTAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATATGTACGCTAGTGTA
*
96669089 AGACCATGTTTGGGACATGGCATC-AGCAACA
66 AGACCATGTCTGGGACATGGCATCGA-CAACA
*
96669120 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGATATGTACGCTAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATATGTACGCTAGTGTA
**
96669185 AGACCATGTCTGGGACATGGCATCGACAATG
66 AGACCATGTCTGGGACATGGCATCGACAACA
* * *
96669216 AGATGAGAGCTAGTGTAAGACCACGTCTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTA
96669245 AGCCAATGTA
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 109 0.99
97 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (96 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATATGTACGCTAGTGTA
AGACCATGTCTGGGACATGGCATCGACAACA
Found at i:96677623 original size:2 final size:2
Alignment explanation
Indices: 96677616--96677658 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
96677606 TGAAATTAGA
*
96677616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96677657 AT
1 AT
96677659 TTTGAAAGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:96679078 original size:43 final size:44
Alignment explanation
Indices: 96679020--96679154 Score: 166
Period size: 43 Copynumber: 3.1 Consensus size: 44
96679010 TATCGAAATG
*
96679020 TGATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
96679064 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
96679107 T-ATTATTCGAGCCTTTGAACCTAGCAGCCTATAATGCCGGTAAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
96679152 TGA
1 TGA
96679155 AATGTTATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.01
43 37 0.49
44 8 0.11
45 29 0.38
46 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:96679467 original size:38 final size:38
Alignment explanation
Indices: 96679424--96679615 Score: 280
Period size: 38 Copynumber: 5.1 Consensus size: 38
96679414 ATGATATTTG
* ** *
96679424 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTAA-TA
96679462 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
96679500 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
96679538 TATCCGGGTTAATTCCCGTAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
96679576 TATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
96679614 TA
1 TA
96679616 GCTTCGTCCT
Statistics
Matches: 142, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
37 1 0.01
38 139 0.98
39 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:96679621 original size:19 final size:19
Alignment explanation
Indices: 96679597--96679634 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
96679587 AATCCCGCAG
*
96679597 GCTTCGTGCTAGTAATATA
1 GCTTCGTCCTAGTAATATA
*
96679616 GCTTCGTCCTGGTAATATA
1 GCTTCGTCCTAGTAATATA
96679635 TCCGGGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (19 bp):
GCTTCGTCCTAGTAATATA
Found at i:96679650 original size:57 final size:57
Alignment explanation
Indices: 96679559--96679672 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
96679549 ATTCCCGTAG
*
96679559 GCTTCGTGCTGGTAATATATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAATATA
1 GCTTCGTCCTGGTAATATATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAATATA
* * * * *
96679616 GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCATGCTTCGTGCTGGTATTATA
1 GCTTCGTCCTGGTAATATATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAATATA
96679673 TCCGGGTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (57 bp):
GCTTCGTCCTGGTAATATATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAATATA
Found at i:96679667 original size:38 final size:38
Alignment explanation
Indices: 96679616--96679716 Score: 139
Period size: 38 Copynumber: 2.7 Consensus size: 38
96679606 TAGTAATATA
* * * *
96679616 GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCAT
1 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
96679654 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
1 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
* * *
96679692 GCCTAGTGCTGGTATTATATTCGGG
1 GCTTCGTGCTGGTATTATATCCGGG
96679717 CCTTTGAGCC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.34
Consensus pattern (38 bp):
GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
Found at i:96679684 original size:95 final size:95
Alignment explanation
Indices: 96679521--96679693 Score: 301
Period size: 95 Copynumber: 1.8 Consensus size: 95
96679511 AATCCCGCAG
* *
96679521 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGTAGGCTTCGTGCTGGTAATATATCCGAGTT
1 GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCGAGTT
96679586 AAATCCCGCAGGCTTCGTGCTAGTAATATA
66 AAATCCCGCAGGCTTCGTGCTAGTAATATA
* * *
96679616 GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCATGCTTCGTGCTGGTATTATATCCGGGTT
1 GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCGAGTT
96679681 AAATCCCGCAGGC
66 AAATCCCGCAGGC
96679694 CTAGTGCTGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (95 bp):
GCTTCGTCCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCGAGTT
AAATCCCGCAGGCTTCGTGCTAGTAATATA
Found at i:96679758 original size:45 final size:45
Alignment explanation
Indices: 96679708--96679834 Score: 202
Period size: 45 Copynumber: 2.8 Consensus size: 45
96679698 TGCTGGTATT
*
96679708 ATATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACA
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
* *
96679753 ATATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATA
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
*
96679798 CTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCG
1 ATATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
96679835 ATGAAATGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
44 4 0.05
45 72 0.95
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
Found at i:96680093 original size:10 final size:10
Alignment explanation
Indices: 96680078--96680106 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
96680068 GGTCAGGGTA
96680078 TGAAAGTATG
1 TGAAAGTATG
96680088 TGAAAGTATG
1 TGAAAGTATG
96680098 TGAAAGTAT
1 TGAAAGTAT
96680107 TTGAGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (10 bp):
TGAAAGTATG
Found at i:96685873 original size:85 final size:85
Alignment explanation
Indices: 96685741--96685900 Score: 232
Period size: 85 Copynumber: 1.9 Consensus size: 85
96685731 TTCACCATAG
* * * * * *
96685741 GTAAGATAATGTTAGAGATCATGTTAGAATCCAATTTCGAATGATCCTGTGTCATACCTGCAACA
1 GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGAATGATCCTGTGACATACCTGCAACA
*
96685806 ACACACGTATTTCAAAATAA
66 ACACAAGTATTTCAAAATAA
*
96685826 GTAAGACAATGTTAGAGATTAGGTCAAAATCCAATTCC-AGATGATCCTGTGACATACCTGCAAC
1 GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGA-ATGATCCTGTGACATACCTGCAAC
96685890 AACACAAGTAT
65 AACACAAGTAT
96685901 GTGAAGCGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
84 1 0.02
85 65 0.98
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGAATGATCCTGTGACATACCTGCAACA
ACACAAGTATTTCAAAATAA
Found at i:96691593 original size:6 final size:6
Alignment explanation
Indices: 96691584--96691611 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
96691574 AAAAATAGAA
96691584 GGGGTG GGGGTG GGGGTG GGGGTG GGGG
1 GGGGTG GGGGTG GGGGTG GGGGTG GGGG
96691612 GAGAGAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.86, T:0.14
Consensus pattern (6 bp):
GGGGTG
Found at i:96699571 original size:3 final size:3
Alignment explanation
Indices: 96699563--96699612 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
96699553 AAAGAACGAG
*
96699563 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA GGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
96699611 AG
1 AG
96699613 TGATTTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:96703072 original size:6 final size:6
Alignment explanation
Indices: 96703061--96703086 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
96703051 AGGGTTACAA
96703061 ATTCAG ATTCAG ATTCAG ATTCAG AT
1 ATTCAG ATTCAG ATTCAG ATTCAG AT
96703087 GATGATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (6 bp):
ATTCAG
Found at i:96703427 original size:16 final size:16
Alignment explanation
Indices: 96703388--96703429 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
96703378 AAAATAACGA
*
96703388 TATAATTACACTTTGT
1 TATAATTACAATTTGT
*
96703404 TA-AATTACAATTTTT
1 TATAATTACAATTTGT
96703419 TATAATTACAA
1 TATAATTACAA
96703430 AAGAGTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (16 bp):
TATAATTACAATTTGT
Found at i:96707031 original size:40 final size:39
Alignment explanation
Indices: 96706940--96707050 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
96706930 ATAACCATGT
* *
96706940 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
96706980 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
96707020 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
96707051 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:96707074 original size:80 final size:80
Alignment explanation
Indices: 96706940--96707089 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
96706930 ATAACCATGT
* * *
96706940 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGGGCTTAGCC
96707005 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
96707020 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTATCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TACCTTCGGGGCTTAG
96707083 CCCGGAT
64 CCCGGAT
96707090 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:96712771 original size:20 final size:20
Alignment explanation
Indices: 96712721--96712772 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
96712711 GTGGTCATAC
*
96712721 ACACGCCCGTGTGTCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
96712741 ACATGCTCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
96712761 ACACGCCCGTGT
1 ACACGCCCGTGT
96712773 CCGCAGCCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.29, G:0.35, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Done.