Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 335 of 444
Found at i:96714528 original size:44 final size:45
Alignment explanation
Indices: 96714441--96714529 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 45
96714431 CAAAACATGA
96714441 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
* *
96714486 GTCACATATATCATGAGCTCAGA-CACAACTCAATGAGTTCAGAT
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
96714530 TTCATAGTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 21 0.50
45 21 0.50
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.24
Consensus pattern (45 bp):
GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
Found at i:96724610 original size:139 final size:138
Alignment explanation
Indices: 96724247--96724629 Score: 608
Period size: 136 Copynumber: 2.8 Consensus size: 138
96724237 GAGAACATAG
* *
96724247 ATATAATTAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCGAATTTTTT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
96724312 AATATAAACAGTTAGATGAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
* *
96724377 TGGAAAGA
131 TAGAAACA
* *
96724385 ATATAATTAATATATGAATTTGATTCATGC-AAA-ATTAATTGCATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
96724448 AATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGGAAATTAATATGCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
96724513 TAGAAACA
131 TAGAAACA
* *
96724521 ATATAATTTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACTGAATTTAT
1 ATATAA-TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
*
96724586 TAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAA
65 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAA
96724630 AGCATGAAGA
Statistics
Matches: 224, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
136 99 0.44
137 26 0.12
138 31 0.14
139 68 0.30
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
TAGAAACA
Found at i:96726698 original size:17 final size:17
Alignment explanation
Indices: 96726673--96726712 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
96726663 CTCAATTAAT
96726673 TTAAA-TAATTTCTCAA
1 TTAAATTAATTTCTCAA
96726689 TTAAATTAATTTCTCAA
1 TTAAATTAATTTCTCAA
*
96726706 TCAAATT
1 TTAAATT
96726713 CTAATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTAATTTCTCAA
Found at i:96730125 original size:31 final size:31
Alignment explanation
Indices: 96730090--96730161 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
96730080 AAGTATTAGG
*
96730090 TACTATGTACCGATGTTTATATTGTATCAGA
1 TACTATGTACCGATGTTTATATTATATCAGA
* *
96730121 TACTATGTATCGATGTTTATATTATATCAGG
1 TACTATGTACCGATGTTTATATTATATCAGA
96730152 TACTATGTAC
1 TACTATGTAC
96730162 TGGTGTTGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (31 bp):
TACTATGTACCGATGTTTATATTATATCAGA
Found at i:96731586 original size:28 final size:28
Alignment explanation
Indices: 96731546--96731604 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
96731536 GAAGCAGTTA
* *
96731546 GGCCTGATGGGCCATATGAATGTGATTG
1 GGCCTGATGGGCCATATGAACGAGATTG
*
96731574 GGCCTGATGGGCCATGTGAACGAGATTG
1 GGCCTGATGGGCCATATGAACGAGATTG
96731602 GGC
1 GGC
96731605 TTAAAGGGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.20, C:0.17, G:0.39, T:0.24
Consensus pattern (28 bp):
GGCCTGATGGGCCATATGAACGAGATTG
Found at i:96731950 original size:27 final size:27
Alignment explanation
Indices: 96731920--96732284 Score: 421
Period size: 27 Copynumber: 13.6 Consensus size: 27
96731910 CGTAAAAAGG
*
96731920 AAAATTACCAAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
96731947 AAAATTACCTAAATACCCCCAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
96731974 AAAATTACCAAAATACCCTTGA-TTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* ** *
96732000 GAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
96732027 AAAATCACCGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
96732054 GAAATTACCAAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * * *
96732081 AAAATTATCGAAACACCCTTGATTTAT
1 AAAATTACCGAAATACCCTCGATTTGT
*
96732108 AAAATTACCGAAAAACCCT-GATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
96732134 GAAATTATCGAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
96732161 AAAATTACCGAAACACCCTTGATTTAT
1 AAAATTACCGAAATACCCTCGATTTGT
*
96732188 -AAATTACCGAAATACCCTCTATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
96732214 AAAATTATCGAAATACCCTCTATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
96732241 AAAATTATCGAAACACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
96732268 AAAATTATCGAAATACC
1 AAAATTACCGAAATACC
96732285 TTTGTAGTGT
Statistics
Matches: 293, Mismatches: 42, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 68 0.23
27 225 0.77
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGATTTGT
Found at i:96732025 original size:53 final size:54
Alignment explanation
Indices: 96731920--96732274 Score: 364
Period size: 53 Copynumber: 6.6 Consensus size: 54
96731910 CGTAAAAAGG
* ***
96731920 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCT-AAATACCCCCAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTA-CTAAAATACCCTTGATTTGT
* * *
96731974 AAAATTACCAAAATACCCTTGA-TTGTGAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGT
* * * * *
96732027 AAAATCACCGAAATACCCTCGATTTGTGAAATTACCAAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGT
* * * * *
96732081 AAAATTATCGAAACACCCTTGATTTATAAAATTACCGAAAA-ACCC-TGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTA-CTAAAATACCCTTGATTTGT
* * * ** * *
96732134 GAAATTATCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTTGATTTAT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGT
* *
96732188 -AAATTACCGAAATACCCTCTATTTGTAAAATTA-TCGAAATACCCTCT-ATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACT-AAAATACCCT-TGATTTGT
* * *
96732241 AAAATTATCGAAACACCCCCGATTTGTAAAATTA
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTA
96732275 TCGAAATACC
Statistics
Matches: 258, Mismatches: 35, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
52 6 0.02
53 129 0.50
54 118 0.46
55 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGT
Found at i:96732059 original size:80 final size:81
Alignment explanation
Indices: 96731920--96732284 Score: 416
Period size: 80 Copynumber: 4.5 Consensus size: 81
96731910 CGTAAAAAGG
** * * * * *
96731920 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCTAAATACCCCCAATTTGTAAAATTACCAA
1 AAAATTACTGAAACACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAA
* *
96731985 AATACCCTTGA-TTGT
66 AACACCCTCGATTTGT
* * * * *
96732000 GAAATTACTAAAATACCCTTGATTTGTAAAATCACCGAAATACCCTCGATTTGTGAAATTACCAA
1 AAAATTACTGAAACACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAA
96732065 AACACCCTCGATTTGT
66 AACACCCTCGATTTGT
* * * * *
96732081 AAAATTA-TCGAAACACCCTTGATTTATAAAATTACCGAAAAACCCT-GATTTGTGAAATTATCG
1 AAAATTACT-GAAACACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCA
96732144 AAACACCCTCGATTTGT
65 AAACACCCTCGATTTGT
* * * * *
96732161 AAAATTACCGAAACACCCTTGATTTAT-AAATTACCGAAATACCCTCTATTTGTAAAATTATCGA
1 AAAATTACTGAAACACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAA
* *
96732225 AATACCCTCTATTTGT
66 AACACCCTCGATTTGT
** *
96732241 AAAATTA-TCGAAACACCCCCGATTTGTAAAATTATCGAAATACC
1 AAAATTACT-GAAACACCCTTGATTTGTAAAATTACCGAAATACC
96732285 TTTGTAGTGT
Statistics
Matches: 250, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
79 17 0.07
80 176 0.70
81 57 0.23
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTGAAACACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAA
AACACCCTCGATTTGT
Found at i:96732280 original size:107 final size:106
Alignment explanation
Indices: 96731920--96732280 Score: 422
Period size: 107 Copynumber: 3.4 Consensus size: 106
96731910 CGTAAAAAGG
* * * * * * *
96731920 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCTAAATACCCCCAATTTGTAAAATTACCAA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGA
* *
96731985 AATACCCTTGA-TTGTGAAATTACTAAAATACCCTTGATTTGT
66 AATACCCTTGATTTGTAAAATTAC-GAAATACCCTT-ATTTGT
* * * * *
96732027 AAAATCACCGAAATACCCTCGATTTGTGAAATTACCAAAACACCCTCGATTTGTAAAATTATCGA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGA
* * * *
96732092 AACACCCTTGATTTATAAAATTACCGAAAAACCCTGATTTGT
66 AATACCCTTGATTTGTAAAATTA-CGAAATACCCTTATTTGT
* * * *
96732134 GAAATTATCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTTGATTTAT-AAATTACCGA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGA
96732198 AATACCCTCT-ATTTGTAAAATTATCGAAATACCCTCTATTTGT
66 AATACCCT-TGATTTGTAAAATTA-CGAAATACCCT-TATTTGT
* * *
96732241 AAAATTATCGAAACACCCCCGATTTGTAAAATTATCGAAA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAA
96732281 TACCTTTGTA
Statistics
Matches: 218, Mismatches: 32, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
106 38 0.17
107 162 0.74
108 17 0.08
109 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (106 bp):
AAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGA
AATACCCTTGATTTGTAAAATTACGAAATACCCTTATTTGT
Found at i:96732295 original size:27 final size:27
Alignment explanation
Indices: 96732158--96732353 Score: 132
Period size: 27 Copynumber: 7.3 Consensus size: 27
96732148 ACCCTCGATT
* * *
96732158 TGTAAAATTACCGAAACACCCTTG-A-
1 TGTAAAATTATCGAAATACCCCTGTAG
* * * *
96732183 TTTATAAATTACCGAAATA-CCCTCTATT
1 TGTA-AAATTATCGAAATACCCCTGTA-G
* *
96732211 TGTAAAATTATCGAAATA-CCCTCTATT
1 TGTAAAATTATCGAAATACCCCTGTA-G
* * *
96732238 TGTAAAATTATCGAAACACCCCCG-ATT
1 TGTAAAATTATCGAAATACCCCTGTA-G
**
96732265 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTATCGAAATACCCCTGTAG
* **
96732292 TGTAAAATTATCAAAATACCATTGTAG
1 TGTAAAATTATCGAAATACCCCTGTAG
* * *
96732319 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCCTGTAG
*
96732346 GGTAAAAT
1 TGTAAAAT
96732354 GACTGTTTGC
Statistics
Matches: 142, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.04
26 14 0.10
27 115 0.81
28 7 0.05
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCCTGTAG
Found at i:96732932 original size:27 final size:27
Alignment explanation
Indices: 96732865--96732932 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
96732855 TGAGGCTAAG
* * *
96732865 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATTCTGTA
* *
96732891 ATGGGCTGTGACCCAAATGATAT-TGTA
1 ATGGGCTTTGGCCCAAATGAT-TCTGTA
96732918 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
96732933 CGTATGCTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATTCTGTA
Found at i:96740962 original size:43 final size:42
Alignment explanation
Indices: 96740910--96741018 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
96740900 TGCCATATAT
* **
96740910 TAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCC
1 TAGATATGGTCTTACACGTAATCTAATATCGATGCC-ATAGCC
* * * *
96740953 TAGCTATGGTCTTGCACG-AAGTCTAATATGGATGCCATATCC
1 TAGATATGGTCTTACACGTAA-TCTAATATCGATGCCATAGCC
*
96740995 TAGATATGGTCTTACAGGTAATCT
1 TAGATATGGTCTTACACGTAATCT
96741019 TAGTAACCCT
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
42 25 0.46
43 29 0.54
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (42 bp):
TAGATATGGTCTTACACGTAATCTAATATCGATGCCATAGCC
Found at i:96743099 original size:40 final size:40
Alignment explanation
Indices: 96742998--96743142 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
96742988 TACTCGAATG
* *
96742998 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
96743039 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
96743079 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
96743119 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
96743143 CTTGGGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:96746272 original size:4 final size:4
Alignment explanation
Indices: 96746263--96746297 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
96746253 TTTAGTTTAG
96746263 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
96746298 ATGGTTTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:96759576 original size:40 final size:40
Alignment explanation
Indices: 96759454--96759569 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 40
96759444 TATTCGGATG
* *
96759454 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
96759494 A-AATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
96759534 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
96759570 AGCTATATCT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.03
40 64 0.94
41 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:96762545 original size:20 final size:18
Alignment explanation
Indices: 96762501--96762545 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
96762491 TAACTAAAAT
96762501 AATAAATTTAAAAATAAA
1 AATAAATTTAAAAATAAA
*
96762519 AGGTAAATATTAAAAATAATA
1 A-ATAAAT-TTAAAAATAA-A
96762540 AATAAA
1 AATAAA
96762546 CGAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.05
19 5 0.23
20 14 0.64
21 2 0.09
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (18 bp):
AATAAATTTAAAAATAAA
Found at i:96766889 original size:14 final size:14
Alignment explanation
Indices: 96766866--96766900 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
96766856 GGGCATGGTT
*
96766866 GTGTGATGGTGTGA
1 GTGTGGTGGTGTGA
96766880 GTGTGGTGGTGTGA
1 GTGTGGTGGTGTGA
*
96766894 GTTTGGT
1 GTGTGGT
96766901 CGTCTAGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.51, T:0.40
Consensus pattern (14 bp):
GTGTGGTGGTGTGA
Found at i:96771250 original size:54 final size:54
Alignment explanation
Indices: 96771192--96771349 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
96771182 ATTACCAAAG
*
96771192 TACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTTTACCATCGATTTACAAAATTACCGTTT
* * * * *
96771246 TACCCTTGATTTATAGAATTACTGTTTTACCATTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCATCGATTTACAAAATTACCGTTT
* * **** * *
96771300 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACTGTTTTACCATCGATTTACAAAATTACC
96771350 AAAATACCCT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 85 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCATCGATTTACAAAATTACCGTTT
Found at i:96771322 original size:27 final size:27
Alignment explanation
Indices: 96771192--96771322 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
96771182 ATTACCAAAG
96771192 TACCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
* * *
96771219 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
96771246 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
96771273 TACCATTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
96771300 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
96771323 AAAATACCAT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.29, C:0.19, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:96771330 original size:27 final size:27
Alignment explanation
Indices: 96771300--96771520 Score: 130
Period size: 27 Copynumber: 8.2 Consensus size: 27
96771290 ATTACTGTTT
*
96771300 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
96771327 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
96771354 TACCCTTGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * ** * *
96771381 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
96771407 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *** *
96771434 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
* **
96771461 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
96771488 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
96771515 TACCCT
1 TACCCT
96771521 TGACTTTCTA
Statistics
Matches: 153, Mismatches: 31, Indels: 19
0.75 0.15 0.09
Matches are distributed among these distances:
26 25 0.16
27 127 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:96771347 original size:81 final size:81
Alignment explanation
Indices: 96771199--96771348 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
96771189 AAGTACCCTC
**** * * *
96771199 GATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTATAGAA
1 GATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATTGATTTACAAAA
96771264 TTACTGTTTTACCATT
66 TTACTGTTTTACCATT
* *
96771280 GATTTATAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTACAAA
1 GATTTATAGAATTATC-GTTTTACCCTCGATTTACAAAATTACCAAAATACCATTGATTTACAAA
96771344 ATTAC
65 ATTAC
96771349 CAAAATACCC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (81 bp):
GATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCATTGATTTACAAAA
TTACTGTTTTACCATT
Found at i:96771358 original size:54 final size:54
Alignment explanation
Indices: 96771300--96771564 Score: 216
Period size: 54 Copynumber: 4.9 Consensus size: 54
96771290 ATTACTGTTT
* * *
96771300 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * * ** * *
96771354 TACCCTTGA-TCAGTAAAATTACCAAAATACC-CTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * *** *
96771407 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * * * *
96771461 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCACTGGTTTACAAAATTACCA-AAA
* * * *
96771515 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTA
1 TACCCTCGA-TTTAT-AAAATTACCA-AAATACCACTGGTTTACAAAATTA
96771565 TTGAAATACC
Statistics
Matches: 167, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 42 0.25
54 90 0.54
55 7 0.04
56 27 0.16
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
Found at i:96771363 original size:81 final size:81
Alignment explanation
Indices: 96771179--96771363 Score: 201
Period size: 81 Copynumber: 2.3 Consensus size: 81
96771169 GTCAAATTGT
* * **
96771179 AAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGT
1 AAAATTACCAAAATACCCTTGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAA
** * *
96771244 TTTACCCTTGATTTAT
66 AATACCATTGATTTAC
* ***** * *
96771260 AGAATTACTGTTTTACCATTGATTTATAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTA
1 AAAATTACCAAAATACCCTTGATTTATAGAATTATC-GTTTTACCCTCGATTTACAAAATTACCA
*
96771324 AAATACCATTGGTTTAC
65 AAATACCATTGATTTAC
96771341 AAAATTACCAAAATACCCTTGAT
1 AAAATTACCAAAATACCCTTGAT
96771364 CAGTAAAATT
Statistics
Matches: 80, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
80 1 0.01
81 79 0.99
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAA
AATACCATTGATTTAC
Found at i:96771570 original size:27 final size:27
Alignment explanation
Indices: 96771531--96771582 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
96771521 TGACTTTCTA
96771531 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
* *
96771558 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATAGAAATACCATTGGTTT
96771583 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:96771666 original size:27 final size:27
Alignment explanation
Indices: 96771636--96771696 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
96771626 ACCTCTATTA
96771636 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** *
96771663 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
96771690 GGTAAAA
1 GGTAAAA
96771697 TGATGAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:96772937 original size:31 final size:31
Alignment explanation
Indices: 96772894--96772968 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
96772884 ACGATTACTG
96772894 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
* *
96772925 GGCCAAAGCCTTTTCATAAATCATTTCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
96772956 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
96772969 ATTGTAAACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:96773043 original size:42 final size:42
Alignment explanation
Indices: 96772992--96773083 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
96772982 TGGCCCATAG
* ** *
96772992 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
96773034 GCCTATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
96773076 GCCCATTT
1 GCCCATTT
96773084 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:96773273 original size:26 final size:26
Alignment explanation
Indices: 96773228--96773377 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
96773218 CCTTTTCAAT
*
96773228 AACTGAGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* ***
96773253 AACTGGGGCATAAGCCATTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
96773279 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
96773305 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
96773331 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
96773357 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
96773378 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
25 9 0.08
26 99 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:96773301 original size:52 final size:52
Alignment explanation
Indices: 96773218--96773377 Score: 261
Period size: 52 Copynumber: 3.1 Consensus size: 52
96773208 GAAGGCCTAG
*
96773218 CCTTTTCAAT-AACTGAGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGC
1 CCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGC
* * *
96773268 CATTTTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAATTGGGGCATAAGC
1 CCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGC
*
96773320 CCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGC
1 CCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGC
96773372 CCTTTT
1 CCTTTT
96773378 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 8 0.08
51 9 0.09
52 83 0.83
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (52 bp):
CCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGC
Found at i:96774221 original size:27 final size:27
Alignment explanation
Indices: 96774179--96774257 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
96774169 GGGCATATTC
* *
96774179 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGTATTACG
*
96774206 GTTACTTTACCCTACAGGGGCT-TTACG
1 GTCACTTTACCCTACAGGGG-TATTACG
*
96774233 GTCACTTTACCCTAATAGGGGTATT
1 GTCACTTTACCCT-ACAGGGGTATT
96774258 TTAGTCATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 35 0.80
28 9 0.20
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGTATTACG
Found at i:96774328 original size:27 final size:27
Alignment explanation
Indices: 96774296--96774513 Score: 184
Period size: 27 Copynumber: 8.0 Consensus size: 27
96774286 TGGTAAATCA
* *
96774296 ACAAACCAAAGGTATTTCAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
** * **
96774323 GTAAACCAATGGTATTTCTATAATTTTT
1 ACAAACCAAGGGTATTTCGGTAA-TTTT
* * * *
96774351 AGAAAGTCAAGGGTATTTCTGTAACTTT
1 ACAAA-CCAAGGGTATTTCGGTAATTTT
** * * *
96774379 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
*** *
96774406 ACAAATTGAGGGTATTTCGGTAATTTC
1 ACAAACCAAGGGTATTTCGGTAATTTT
*
96774433 ACAAACCAAGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
* * *
96774460 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
**
96774487 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
96774514 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 127 0.82
28 13 0.08
29 15 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTCGGTAATTTT
Found at i:96774525 original size:27 final size:27
Alignment explanation
Indices: 96774306--96774554 Score: 171
Period size: 27 Copynumber: 9.1 Consensus size: 27
96774296 ACAAACCAAA
* * * *
96774306 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
96774333 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
96774362 GGTATTTCT-GTAACTTTGTAAATCAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * **
96774389 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
** * * *
96774416 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
96774443 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
96774470 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
96774497 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
96774524 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
96774551 GGTA
1 GGTA
96774555 AAACAATAAT
Statistics
Matches: 180, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.01
27 148 0.82
28 15 0.08
29 15 0.08
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:96774555 original size:27 final size:27
Alignment explanation
Indices: 96774505--96774716 Score: 228
Period size: 27 Copynumber: 7.9 Consensus size: 27
96774495 AGGGTATTTT
* *
96774505 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
96774532 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
96774559 AATAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
96774586 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
96774613 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
96774640 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
96774667 GGCAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
96774694 AGTAATTCTATAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
96774717 CTTTGGTAAT
Statistics
Matches: 159, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 157 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:96774727 original size:81 final size:81
Alignment explanation
Indices: 96774508--96774716 Score: 265
Period size: 81 Copynumber: 2.6 Consensus size: 81
96774498 GTATTTTAGT
* * * * *
96774508 AATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAATAATTCTATAAA
1 AATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTATATAAA
* *
96774573 TTGAGGGTAAAACGGT
66 TCGAGGGTAAAACGGC
* * * * * *
96774589 AATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAA
1 AATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTATATAAA
* *
96774654 TCGGGGGTAAAATGGC
66 TCGAGGGTAAAACGGC
* *
96774670 AATTATGTAAATCGGGGGTAAAACAGTAATTCTATAAATCGGGGGTA
1 AATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
96774717 CTTTGGTAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
AATTATGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTATATAAA
TCGAGGGTAAAACGGC
Found at i:96774794 original size:26 final size:27
Alignment explanation
Indices: 96774722--96774810 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
96774712 GGGTACTTTG
*
96774722 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAAATC-AAGGGTATTTCA
*
96774749 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTCA
* * *
96774776 GTATTTTTACAACT-AAGGGTATTTCG
1 GTAATTTTACAAATCAAGGGTATTTCA
96774802 GTAATTTTA
1 GTAATTTTA
96774811 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.35
27 35 0.65
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTCA
Found at i:96776362 original size:42 final size:42
Alignment explanation
Indices: 96776315--96776402 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
96776305 TAGTCTCCCC
* ** *
96776315 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
96776357 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
96776399 AAAT
1 AAAT
96776403 AGGCCTAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:96776507 original size:31 final size:31
Alignment explanation
Indices: 96776430--96776508 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
96776420 CGTTTACAGT
* *
96776430 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
96776461 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
96776492 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
96776509 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:96787272 original size:40 final size:40
Alignment explanation
Indices: 96787227--96787356 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
96787217 CGGAATACAA
96787227 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
96787267 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
96787307 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
96787347 CCGGATATAA
1 CCGGATATAA
96787357 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:96787371 original size:40 final size:40
Alignment explanation
Indices: 96787227--96787390 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
96787217 CGGAATACAA
* **
96787227 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
96787267 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
96787307 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
96787347 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
96787387 CCGG
1 CCGG
96787391 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:96794924 original size:46 final size:46
Alignment explanation
Indices: 96794869--96795049 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
96794859 TAGGATGGTT
96794869 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
96794915 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
96794961 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
96795008 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96795050 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:96795030 original size:93 final size:93
Alignment explanation
Indices: 96794871--96795041 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
96794861 GGATGGTTGA
* *
96794871 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96794936 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
96794964 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96795029 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96795042 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96798034 original size:15 final size:15
Alignment explanation
Indices: 96797995--96798073 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
96797985 GTATCTTGGG
*
96797995 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
96798010 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
96798025 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
96798039 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
96798054 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
96798068 TTTCTT
1 TTTCTT
96798074 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:96798058 original size:29 final size:29
Alignment explanation
Indices: 96797986--96798072 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
96797976 CATAGTATCG
* * * *
96797986 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
96798016 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
96798045 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
96798073 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:96800480 original size:46 final size:46
Alignment explanation
Indices: 96800425--96800605 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
96800415 TAGGATGGTT
96800425 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
96800471 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
96800517 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
96800564 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96800606 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:96800586 original size:93 final size:93
Alignment explanation
Indices: 96800427--96800597 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
96800417 GGATGGTTGA
* *
96800427 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96800492 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
96800520 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96800585 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96800598 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96806910 original size:21 final size:21
Alignment explanation
Indices: 96806884--96806934 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
96806874 TCCCATAACC
96806884 GTCGCCGGAATAGGTAATGGT
1 GTCGCCGGAATAGGTAATGGT
*
96806905 GTCGCCAGAATAGGTAATGGT
1 GTCGCCGGAATAGGTAATGGT
*
96806926 GTCACCGGA
1 GTCGCCGGA
96806935 CAGATAGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (21 bp):
GTCGCCGGAATAGGTAATGGT
Found at i:96811320 original size:27 final size:27
Alignment explanation
Indices: 96811266--96811349 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
96811256 AGCATGGCTG
* * *
96811266 CCAGAACAGA-TAGTGTGACAGAGTCA
1 CCAGAACAGATTAATGTGGCAGAGCCA
*
96811292 CCAGAACAGATTATTGTGGCAGAGCCA
1 CCAGAACAGATTAATGTGGCAGAGCCA
* * *
96811319 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATTAATGTGGCAGAGCCA
96811346 CCAG
1 CCAG
96811350 GAGGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATTAATGTGGCAGAGCCA
Found at i:96812767 original size:25 final size:24
Alignment explanation
Indices: 96812734--96812790 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 24
96812724 AACTCTTGCT
96812734 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTCT-C
96812760 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
96812784 CCTTATC
1 CCTTATC
96812791 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:96812796 original size:24 final size:25
Alignment explanation
Indices: 96812734--96812797 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
96812724 AACTCTTGCT
*
96812734 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCACCTCCTAAATCTTCTCC
*
96812760 CCTTATCAGCTCCTAAATCTTCT-C
1 CCTTATCACCTCCTAAATCTTCTCC
*
96812784 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
96812798 TACTCAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 13 0.36
25 19 0.53
26 4 0.11
ACGTcount: A:0.17, C:0.42, G:0.05, T:0.36
Consensus pattern (25 bp):
CCTTATCACCTCCTAAATCTTCTCC
Found at i:96819166 original size:27 final size:27
Alignment explanation
Indices: 96819110--96819220 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
96819100 AGCATGGCTG
* *
96819110 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
96819136 CCAGAACAGATAATTATGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
96819163 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
96819190 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
96819217 CCAG
1 CCAG
96819221 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:96819547 original size:16 final size:15
Alignment explanation
Indices: 96819526--96819555 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
96819516 CAAAATACCG
96819526 GCTTTTCGGCATTTTA
1 GCTTTTCGG-ATTTTA
96819542 GCTTTTCGGATTTT
1 GCTTTTCGGATTTT
96819556 GCCGACCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53
Consensus pattern (15 bp):
GCTTTTCGGATTTTA
Found at i:96820543 original size:25 final size:24
Alignment explanation
Indices: 96820510--96820566 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 24
96820500 AACTCTTGCT
96820510 CCTTGATCAGCTCCTAAATCTTCTTC
1 CCTT-ATCAGCTCCTAAATCTTC-TC
96820536 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
96820560 CCTTATC
1 CCTTATC
96820567 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 9 0.29
25 18 0.58
26 4 0.13
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.39
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:96820572 original size:24 final size:25
Alignment explanation
Indices: 96820510--96820573 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
96820500 AACTCTTGCT
*
96820510 CCTTGATCAGCTCCTAAATCTTCTTC
1 CCTT-ATCACCTCCTAAATCTTCTTC
*
96820536 CCTTATCAGCTCCTAAATCTTC-TC
1 CCTTATCACCTCCTAAATCTTCTTC
*
96820560 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
96820574 TACTCAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 14 0.39
25 18 0.50
26 4 0.11
ACGTcount: A:0.17, C:0.41, G:0.05, T:0.38
Consensus pattern (25 bp):
CCTTATCACCTCCTAAATCTTCTTC
Found at i:96822070 original size:15 final size:15
Alignment explanation
Indices: 96822024--96822078 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
96822014 TAAGAAAATT
96822024 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
96822039 -AGATAGA-AAACCCA
1 GA-ATAAAGAAATCCA
96822053 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
96822068 GAATAAAGAAA
1 GAATAAAGAAA
96822079 CCCAAGATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 11 0.33
15 22 0.67
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:96825137 original size:49 final size:49
Alignment explanation
Indices: 96825078--96825274 Score: 223
Period size: 50 Copynumber: 4.0 Consensus size: 49
96825068 GTAGACAAGG
* * *
96825078 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
96825127 TTATCTGGTACACGTAGTAGCCTGCACTTAGTCCTAGACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * * *
96825177 CCACCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * *
96825227 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
96825275 TCACAATAGA
Statistics
Matches: 123, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.33
50 45 0.37
51 38 0.31
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:96825275 original size:101 final size:99
Alignment explanation
Indices: 96825092--96825275 Score: 260
Period size: 101 Copynumber: 1.8 Consensus size: 99
96825082 CTGGTACGCA
* * *
96825092 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
* * *
96825157 GTCCTAGACACGTGACCTAACCACCTGATACACG
66 GTACTACACACGCGACCTAACCACCTGATACACG
* * *
96825191 TAGTAGCCTGCACTTAGTACTACACACGTGATCCAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
*
96825256 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
96825276 CACAATAGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 28 0.38
100 4 0.05
101 41 0.56
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCACCTGATACACG
Found at i:96827714 original size:46 final size:46
Alignment explanation
Indices: 96827647--96827821 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
96827637 TGTAACCCGC
96827647 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
96827693 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
96827743 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
96827786 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96827822 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:96827767 original size:93 final size:93
Alignment explanation
Indices: 96827655--96827825 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96827645 GCCCATAAGT
** *
96827655 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96827720 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
96827748 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
96827813 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96827826 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:96831249 original size:46 final size:44
Alignment explanation
Indices: 96831198--96831353 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 44
96831188 GTTGATGCCG
* * *
96831198 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGT-GCTGATGCA
1 TGTCCCAGACATGTCTTACACTGACACATCT---CGTAGCCGATGCA
*
96831244 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGA-CACATCTCGTAGCCGATGCA
* *
96831288 TGTCCCAGACATGTCTGACACTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCCGATGCA
96831334 TGTCCCAGACATGTCTTACA
1 TGTCCCAGACATGTCTTACA
96831354 GTGGCTCTCA
Statistics
Matches: 96, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.03
44 29 0.30
45 2 0.02
46 62 0.65
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCGATGCA
Found at i:96831359 original size:46 final size:45
Alignment explanation
Indices: 96831238--96831451 Score: 195
Period size: 46 Copynumber: 4.7 Consensus size: 45
96831228 TAACCGTGCT
*
96831238 GATGCATGTCCCAGACATGTCTTACACTAGC-ACATCTCGTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCG-AGGCC
* *
96831282 GACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-ACATCTCGAGGCC
* * * * *
96831328 GATGCATGTCCCAGACATGTCTTACAGTGGCTCTCAAACT-GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-AC-ATCTCGAGGCC
* * * * *
96831374 GATGCATGTCCCAGACATGACTTACACTAGCCCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTACATCTCGAGGCC
*
96831420 GATGCCATGT-CCATACATGGTCTTACACTGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC
96831452 ACACAAATCT
Statistics
Matches: 138, Mismatches: 23, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
44 28 0.20
45 4 0.03
46 86 0.62
47 18 0.13
48 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAGGCC
Found at i:96831421 original size:92 final size:91
Alignment explanation
Indices: 96831238--96831457 Score: 221
Period size: 92 Copynumber: 2.4 Consensus size: 91
96831228 TAACCGTGCT
* * *
96831238 GATGCATGTCCCAGACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGT
1 GATGCATGTCCCAGACATGTCTTACACTGGCCACAACTCGTAGCCGACGCATGTCCCAGACATGA
* * *
96831302 CTGACACTGGCTAACATCTCGAGGCC
66 CTGACACTAGCCAACATCTCAAGGCC
* * * * *
96831328 GATGCATGTCCCAGACATGTCTTACAGTGGCTCTCAAACT-GTGGCTGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-CAC-AACTCGTAGCCGACGCATGTCCCAGACAT
* ** * *
96831392 GACTTACACTAGCCCTCGTCTCAATGCC
64 GACTGACACTAGCCAACATCTCAAGGCC
*
96831420 GATGCCATGT-CCATACATGGTCTTACACTGGCACACAA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-CACAA
96831458 ATCTCATGTA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
90 28 0.27
92 55 0.52
93 22 0.21
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCCACAACTCGTAGCCGACGCATGTCCCAGACATGA
CTGACACTAGCCAACATCTCAAGGCC
Found at i:96834033 original size:46 final size:46
Alignment explanation
Indices: 96833966--96834140 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
96833956 TGTAACCCGC
96833966 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
96834012 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
96834062 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
96834105 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96834141 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:96834086 original size:93 final size:93
Alignment explanation
Indices: 96833974--96834144 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96833964 GCCCATAAGT
** *
96833974 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96834039 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
96834067 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
96834132 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96834145 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:96835128 original size:39 final size:40
Alignment explanation
Indices: 96835070--96835249 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
96835060 AATCAAGCAT
* *
96835070 CTTCGGGT-TTAG-CCGGATATAACCACTCGC-CCAAGGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
*** * *
96835107 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
* *** *
96835147 CTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
* * * ** * *
96835187 CTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAACCAC-TAGCACAAAGGC
*
96835228 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
96835250 CATTCGAGTA
Statistics
Matches: 117, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
37 8 0.07
38 4 0.03
39 14 0.12
40 62 0.53
41 29 0.25
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
Found at i:96835232 original size:41 final size:40
Alignment explanation
Indices: 96835105--96835249 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
96835095 CTCGCCCAAG
* * *
96835105 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
96835145 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
96835185 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
96835226 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
96835250 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:96843263 original size:41 final size:40
Alignment explanation
Indices: 96843136--96843280 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
96843126 CTCGCCCAAG
* * *
96843136 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
96843176 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
96843216 GCCTTC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
96843257 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
96843281 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:96843996 original size:2 final size:2
Alignment explanation
Indices: 96843989--96844018 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
96843979 ATGTGCAAAC
*
96843989 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96844019 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:96845960 original size:2 final size:2
Alignment explanation
Indices: 96845953--96845977 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96845943 TCACTAAAGC
96845953 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
96845978 GTACAAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96848117 original size:47 final size:47
Alignment explanation
Indices: 96848064--96848235 Score: 183
Period size: 47 Copynumber: 3.7 Consensus size: 47
96848054 AGATATTTGA
*
96848064 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
96848111 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATAGATGCGAAC---
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATG-TAACTAG
* *
96848159 G--TCTGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
96848204 GCATCCGAGCTCATTAAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
96848236 ACTTATGGAT
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 1 0.01
46 25 0.25
47 56 0.55
48 1 0.01
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96848232 original size:93 final size:93
Alignment explanation
Indices: 96848073--96848281 Score: 330
Period size: 93 Copynumber: 2.2 Consensus size: 93
96848063 AGCATCCGAA
* * *
96848073 CTCGTTGAGTTGAGTCCGAGTTCGTGGGATGTAACTAGGCATCCGAACTCGTTGAGTTAAGTCCG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTAAGTTAAGTCCG
*
96848138 AGTTCACTTATAGATGCGAAC-GTCTGAG
66 AGTTCACTTATAGATGCAAACGGT-TGAG
* *
96848166 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCATTAAGTTGAGTCCG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTAAGTTAAGTCCG
*
96848231 AGTTCACTTATGGATGCAAACGGTTGAG
66 AGTTCACTTATAGATGCAAACGGTTGAG
*
96848259 CTTGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
96848282 ACTTATGGGC
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 105 0.98
94 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTAAGTTAAGTCCG
AGTTCACTTATAGATGCAAACGGTTGAG
Found at i:96848288 original size:46 final size:47
Alignment explanation
Indices: 96848120--96848289 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 47
96848110 GGCATCCGAA
* * *
96848120 CTCGTTGAGTTAAGTCCGAGTTCACTTATAGATGCGAAC-GTCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGTCTGAG
* * * *
96848166 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAC--GG--TCTGAG
* *
96848213 CTCATTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGT-TGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGTCTGAG
*
96848259 CTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96848290 GCAGGTTACA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 53 0.52
47 27 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGGTCTGAG
Found at i:96853091 original size:37 final size:37
Alignment explanation
Indices: 96853032--96853140 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
96853022 AGCTCAGACG
* *
96853032 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
96853069 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
96853106 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
96853141 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:96853413 original size:48 final size:48
Alignment explanation
Indices: 96853287--96853425 Score: 181
Period size: 52 Copynumber: 2.8 Consensus size: 48
96853277 GCACATCGTC
*
96853287 TACATATTTCACACTCGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACA-TTGCCATTCGGCTTTACCACATATACATATCTC--A-A
* *
96853339 TATATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTG-CCATTCGGCTTTACCACATATACATATCTCAA
*
96853387 TACATATTTCACATTAGCCATTCGGCTTTAACACATATA
1 TACATATTTCACATT-GCCATTCGGCTTTACCACATATA
96853426 TGCATGTTCA
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
48 35 0.44
49 1 0.01
51 2 0.03
52 41 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:96853474 original size:47 final size:47
Alignment explanation
Indices: 96853395--96853588 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
96853385 CATACATATT
* * * *
96853395 TCACATTAGCCATTCGGCTTTAACACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
96853442 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
96853489 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATGCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
** * **
96853536 TCACATTGGCCATTCGGCCTTATCTTATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
96853583 TCACAT
1 TCACAT
96853589 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:96853505 original size:94 final size:95
Alignment explanation
Indices: 96853348--96853559 Score: 279
Period size: 94 Copynumber: 2.2 Consensus size: 95
96853338 ATATATATTT
* * * *
96853348 CACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATATTTCACATTAGCCATTCGG
1 CACATTGGCCATTCGGCCTTATCCACATATGCATAGCTCA-ACATATATCACATTAGCCATTCGG
* * *
96853412 CTTTAACACATATATGCATGTTCATATTCAC
65 CCTTAACACATATATGCATGTTCACATGCAC
*
96853443 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC-ACAT-TCATCACATTGGCCATTCG
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATAGCTCAACATAT-ATCACATTAGCCATTCG
* *
96853505 GCCTTATCACATATATGCATGTTCACATGCAT
64 GCCTTAACACATATATGCATGTTCACATGCAC
96853537 CACATTGGCCATTCGGCCTTATC
1 CACATTGGCCATTCGGCCTTATC
96853560 TTATATATAC
Statistics
Matches: 104, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
93 1 0.01
94 69 0.66
95 19 0.18
96 4 0.04
97 11 0.11
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (95 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATAGCTCAACATATATCACATTAGCCATTCGGC
CTTAACACATATATGCATGTTCACATGCAC
Found at i:96857455 original size:17 final size:18
Alignment explanation
Indices: 96857422--96857456 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
96857412 TTTTAAGAAG
96857422 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
96857440 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
96857457 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:96860634 original size:28 final size:29
Alignment explanation
Indices: 96860524--96860638 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
96860514 GTGAGAATGA
* *
96860524 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
96860552 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
96860581 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
96860610 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
96860638 A
1 A
96860639 GATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:96860646 original size:57 final size:58
Alignment explanation
Indices: 96860537--96860647 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
96860527 TGAATGTGAC
* *
96860537 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
96860595 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
96860648 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:96869891 original size:44 final size:42
Alignment explanation
Indices: 96869828--96869982 Score: 190
Period size: 43 Copynumber: 3.6 Consensus size: 42
96869818 ATGTGTTATT
96869828 GTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTAC
*
96869872 GTGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTT-C
1 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTAC
**
96869914 GTGTAAGACCGTGTCTGGGACAG-TGGCATCGATATTTGA-TTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG--ATTTGATTTAC
* *
96869957 ATGTAAGACCACGTCTAGGACGTTGG
1 GTGTAAGACCACGTCTGGGACGTTGG
96869983 ATTGTACGAG
Statistics
Matches: 98, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
42 30 0.31
43 35 0.36
44 32 0.33
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTAC
Found at i:96872439 original size:47 final size:47
Alignment explanation
Indices: 96872383--96872541 Score: 148
Period size: 46 Copynumber: 3.4 Consensus size: 47
96872373 GAGCTAGTGT
* ***
96872383 AAGACATGTCTAGGACATGCATCAGCCA-TTTTACGAGAGCCAATGC
1 AAGACATGTCTGGGACATGCATCAGCCAGTGAGACGAGAGCCAATGC
* * * *
96872429 AAGACTATGTCTGGGACATGGCATCA-ACAGTGAGACGAGAGCTAGTGT
1 AAGAC-ATGTCTGGGACAT-GCATCAGCCAGTGAGACGAGAGCCAATGC
* * *
96872477 AAGACATGTCTGGGACATGCATCAGCC--TCGAGATGTA-AGCCAGTGA
1 AAGACATGTCTGGGACATGCATCAGCCAGT-GAGACG-AGAGCCAATGC
96872523 AAGACATGTCTGGGACATG
1 AAGACATGTCTGGGACATG
96872542 TATCGGTTAC
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 42 0.44
47 29 0.31
48 23 0.24
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (47 bp):
AAGACATGTCTGGGACATGCATCAGCCAGTGAGACGAGAGCCAATGC
Found at i:96880514 original size:43 final size:43
Alignment explanation
Indices: 96880410--96880527 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 43
96880400 TAGGATTTTT
* * *
96880410 GATATGTGATTACGTGTAAGACCATGTCTGGAACATCAGTATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACATCAGCATC
* * *
96880453 G-TATTTGATT-CTTGTAAGACCTTGTCTGGGACAGTC-GCATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACA-TCAGCATC
*
96880494 GATATGTGATTACATGTAAGACCACGTCTGGGAC
1 GATATGTGATTACATGTAAGACCATGTCTGGGAC
96880528 TTTGGCATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 25 0.40
42 18 0.29
43 20 0.32
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCATGTCTGGGACATCAGCATC
Found at i:96880603 original size:56 final size:56
Alignment explanation
Indices: 96880541--96880731 Score: 278
Period size: 56 Copynumber: 3.4 Consensus size: 56
96880531 GGCATTGTAC
* * * *
96880541 GATATGTGTCTGTGAGTAAGACCATGTTTAATATGTTGGCATCGATCTGTGATTCT
1 GATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
*
96880597 GATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCC
1 GATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
**
96880653 GATATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT-T
1 GATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
*
96880708 CGATATGTGT-TAACGAGTAAGACC
1 -GATATGTGTGT-GCGAGTAAGACC
96880732 CTATCTGGGA
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
55 1 0.01
56 123 0.99
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (56 bp):
GATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
Found at i:96880745 original size:56 final size:56
Alignment explanation
Indices: 96880540--96880758 Score: 228
Period size: 56 Copynumber: 3.9 Consensus size: 56
96880530 TGGCATTGTA
* ** * * ** *
96880540 CGATATGTGTCTGTGAGTAAGACCATGTTTAATATGTTGGCATCGATCTGTGATTC
1 CGATATGTGTGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
* * * **
96880596 TGATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTC
1 CGATATGTGTGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
* * *
96880652 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTT
1 CGATATGTGTGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
**
96880708 CGATATGTGT-TAACGAGTAAGACC-C-TATCTGGGACATTGGCATCGATATGT
1 CGATATGTGTGT-ACGAGTAAGACCACGT-T-TAAGACATTGGCATCGATATGT
96880759 AATTACATGT
Statistics
Matches: 147, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
54 1 0.01
55 3 0.02
56 143 0.97
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (56 bp):
CGATATGTGTGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
Found at i:96880748 original size:112 final size:112
Alignment explanation
Indices: 96880540--96880758 Score: 266
Period size: 112 Copynumber: 2.0 Consensus size: 112
96880530 TGGCATTGTA
* * ** *
96880540 CGATATGTGTCTGTGAGTAAGACCATGTTTAATATGTTGGCATCGATCTGTGATTCTGATATGTG
1 CGATATGTGTCTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATGTG
* * **
96880605 TGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTC
66 TGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
*
96880652 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT-TCGATATGT
1 CGATATGTGTCTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT-GATATGT
**
96880716 GT-TAACGAGTAAGACC-C-TATCTGGGACATTGGCATCGATATGT
65 GTGT-ACGAGTAAGACCACGT-T-TAAGACATTGGCATCGATATGT
96880759 AATTACATGT
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
110 1 0.01
111 4 0.04
112 86 0.95
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (112 bp):
CGATATGTGTCTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATGTG
TGTACGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGATTC
Found at i:96882091 original size:13 final size:14
Alignment explanation
Indices: 96882063--96882095 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
96882053 CATTTTGACC
*
96882063 ATGTTTATATTTAT
1 ATGTTTATATTGAT
96882077 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
96882090 ATGTTT
1 ATGTTT
96882096 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:96885800 original size:25 final size:25
Alignment explanation
Indices: 96885772--96885820 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
96885762 ATAATTAAAC
* * *
96885772 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
96885797 CCTAGGGGCAAAATAGTCATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
96885821 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:96888122 original size:14 final size:15
Alignment explanation
Indices: 96888094--96888123 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96888084 TTTATATGTG
96888094 TTAATTTTTCGTGTT
1 TTAATTTTTCGTGTT
96888109 TTAATTTTTC-TGTT
1 TTAATTTTTCGTGTT
96888123 T
1 T
96888124 GGATGTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (15 bp):
TTAATTTTTCGTGTT
Found at i:96900547 original size:24 final size:24
Alignment explanation
Indices: 96900496--96900684 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
96900486 GCTTTATCAT
*
96900496 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
96900521 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96900545 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
96900568 ATAGCTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
96900591 ATTACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
96900615 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
96900639 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
96900662 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
96900685 TCACTTCCTC
Statistics
Matches: 152, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
23 65 0.43
24 75 0.49
25 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:96900575 original size:23 final size:23
Alignment explanation
Indices: 96900517--96900683 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
96900507 CCTAGCCTCT
*
96900517 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96900540 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
96900564 TTTAATAGCTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
96900587 TTTAATTACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
96900610 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
96900634 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
96900658 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
96900681 TTT
1 TTT
96900684 TTCACTTCCT
Statistics
Matches: 135, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 68 0.50
24 67 0.50
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:96900576 original size:47 final size:47
Alignment explanation
Indices: 96900517--96900684 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
96900507 CCTAGCCTCT
*
96900517 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
96900564 TTTAATAGCTGGGGCATAAGCCC-TTTAATTACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
96900610 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
96900658 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
96900685 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 22 0.20
47 68 0.61
48 21 0.19
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:96900756 original size:9 final size:9
Alignment explanation
Indices: 96900742--96900798 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
96900732 ATCTCATGTG
96900742 CATATCATA
1 CATATCATA
*
96900751 CATATCATGTG
1 CATATCA--TA
96900762 CATATCATA
1 CATATCATA
* *
96900771 CATGTCATGTG
1 CATATCA--TA
96900782 CATATCATA
1 CATATCATA
96900791 CATATCAT
1 CATATCAT
96900799 GTTTATTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:96900758 original size:20 final size:20
Alignment explanation
Indices: 96900730--96900800 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
96900720 GCATTTATGA
*
96900730 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96900750 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
96900770 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
96900790 ACATATCATGT
1 ACATATCATGT
96900801 TTATTAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:96900765 original size:11 final size:11
Alignment explanation
Indices: 96900735--96900789 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
96900725 TATGAACATC
96900735 TCATGTGCATA
1 TCATGTGCATA
*
96900746 TCA--TACATA
1 TCATGTGCATA
96900755 TCATGTGCATA
1 TCATGTGCATA
* *
96900766 TCA--TACATG
1 TCATGTGCATA
96900775 TCATGTGCATA
1 TCATGTGCATA
96900786 TCAT
1 TCAT
96900790 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:96902900 original size:55 final size:56
Alignment explanation
Indices: 96902838--96902971 Score: 207
Period size: 55 Copynumber: 2.4 Consensus size: 56
96902828 GGCATTGTAC
* *
96902838 GATATGTGTATGCGAGCAAGACCACGTTTAATACGTTGGAATCGATATGTGATTCT
1 GATATGTGTATGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATATGATTCT
* *
96902894 G-TATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGATTCT
1 GATATGTGTATGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATATGATTCT
* *
96902949 GATATGTGTTTACGAGTAAGACC
1 GATATGTGTATGCGAGTAAGACC
96902972 CTATTTGGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
55 51 0.72
56 20 0.28
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
GATATGTGTATGCGAGTAAGACCACGTTTAATACGTTGGAATCGATATATGATTCT
Found at i:96902989 original size:56 final size:55
Alignment explanation
Indices: 96902840--96902996 Score: 156
Period size: 55 Copynumber: 2.8 Consensus size: 55
96902830 CATTGTACGA
* * * * * * *
96902840 TATGTGTATGCGAGCAAGACCACGTTTAATACGTTGGAATCGATATGTGATTCTG
1 TATGTGTGTACGAGTAAGACCACATTTAAGACGTTGGCATCGATATATGATTCTG
* * *
96902895 TATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGATTCTG
1 TATGTGTGTACGAGTAAGACCACATTTAAGACGTTGGCATCGATATATGATTCTG
* **
96902950 ATATGTGTTTACGAGTAAGACC-CTATTTGGGACAG-TGGCATCGATAT
1 -TATGTGTGTACGAGTAAGACCAC-ATTTAAGAC-GTTGGCATCGATAT
96902997 GTAATTACAT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
55 52 0.58
56 36 0.40
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (55 bp):
TATGTGTGTACGAGTAAGACCACATTTAAGACGTTGGCATCGATATATGATTCTG
Found at i:96904296 original size:13 final size:14
Alignment explanation
Indices: 96904268--96904300 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
96904258 CATTTTGACC
*
96904268 ATGTTTATATTTAT
1 ATGTTTATATTGAT
96904282 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
96904295 ATGTTT
1 ATGTTT
96904301 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:96906875 original size:27 final size:27
Alignment explanation
Indices: 96906835--96906905 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
96906825 TCGCCCTTAG
**
96906835 GGGAATTTTGGTAATTTTACAAGTCAA
1 GGGAATTTCAGTAATTTTACAAGTCAA
* * * * *
96906862 GGGTATTTCAGTAATTATATAGGTCGA
1 GGGAATTTCAGTAATTTTACAAGTCAA
96906889 GGGAATTTCAGTAATTT
1 GGGAATTTCAGTAATTT
96906906 CACACATTAG
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (27 bp):
GGGAATTTCAGTAATTTTACAAGTCAA
Found at i:96908271 original size:4 final size:4
Alignment explanation
Indices: 96908262--96908291 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
96908252 AGGTATTTGC
96908262 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
96908292 ACAAAAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:96908403 original size:4 final size:4
Alignment explanation
Indices: 96908396--96908423 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
96908386 ATATATATAC
96908396 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
96908424 ATACAAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:96911429 original size:39 final size:39
Alignment explanation
Indices: 96911370--96911506 Score: 195
Period size: 39 Copynumber: 3.5 Consensus size: 39
96911360 TAACAATTAG
* *
96911370 TTATTCAGTACAATAATTTAGTCATTCAGTAACTATCAGA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCA-A
* *
96911410 -TATTCAGTACAGTAGTTTAGTTATTCAATAACTATCAA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
* *
96911448 TTATTCAATATAGTAATTTAGTTATTCAGTAACTATCAA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
*
96911487 TTATTCAGTACAGTAGTTTA
1 TTATTCAGTACAGTAATTTA
96911507 CCCCCATTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 84 0.99
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (39 bp):
TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
Found at i:96911452 original size:78 final size:78
Alignment explanation
Indices: 96911356--96911506 Score: 223
Period size: 78 Copynumber: 1.9 Consensus size: 78
96911346 TATCATACAA
* * *
96911356 TCAATAACAATTAGTTATTCAGTACAATAATTTAGTCATTCAGTAACTATCAGA-TATTCAGTAC
1 TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCA-ATTATTCAGTAC
96911420 AGTAGTTTAGTTAT
65 AGTAGTTTAGTTAT
* * * *
96911434 TCAATAACTATCAATTATTCAATATAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCAATTATTCAGTACA
96911499 GTAGTTTA
66 GTAGTTTA
96911507 CCCCCATTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
77 1 0.02
78 64 0.98
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40
Consensus pattern (78 bp):
TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCAATTATTCAGTACA
GTAGTTTAGTTAT
Found at i:96911494 original size:18 final size:18
Alignment explanation
Indices: 96911393--96911496 Score: 66
Period size: 18 Copynumber: 5.4 Consensus size: 18
96911383 TAATTTAGTC
96911393 ATTCAGTAACTATCAGA-T
1 ATTCAGTAACTATCA-ATT
* * *
96911411 ATTCAGTACAGTAGTTTAGTT
1 ATTCAGTA-ACTA--TCAATT
*
96911432 ATTCAATAACTATCAATT
1 ATTCAGTAACTATCAATT
* * * *
96911450 ATTCAATATAGTAATTTAGTT
1 ATTCAGTA-ACT-A-TCAATT
96911471 ATTCAGTAACTATCAATT
1 ATTCAGTAACTATCAATT
96911489 ATTCAGTA
1 ATTCAGTA
96911497 CAGTAGTTTA
Statistics
Matches: 65, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
18 32 0.49
19 6 0.09
20 6 0.09
21 21 0.32
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (18 bp):
ATTCAGTAACTATCAATT
Found at i:96917093 original size:28 final size:29
Alignment explanation
Indices: 96917008--96917107 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
96916998 GTGACGAGAT
96917008 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96917037 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96917065 TGGCACT-AGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
96917093 TGTCACTAAGTGTGC
1 TGGCACTAAGTGTGC
96917108 GAGCTCGAAG
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 32 0.47
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:96917133 original size:56 final size:56
Alignment explanation
Indices: 96917008--96917133 Score: 175
Period size: 56 Copynumber: 2.2 Consensus size: 56
96916998 GTGACGAGAT
*
96917008 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAATA
1 TGGCACT-AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAATA
* **
96917065 TGGCACTAGTGTGCATGCTGGAAATATATGTCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAA-AATA
96917122 TGGCACT-GTGTG
1 TGGCACTAGTGTG
96917134 TGCGGGCTTA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
56 46 0.73
57 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
TGGCACTAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAATA
Found at i:96924409 original size:29 final size:29
Alignment explanation
Indices: 96924376--96924536 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
96924366 GTGACGAGAT
96924376 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
96924405 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
96924434 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
96924463 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
96924492 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
96924521 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96924537 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:96931256 original size:29 final size:29
Alignment explanation
Indices: 96931135--96931234 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
96931125 GTGACGAGAT
96931135 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96931164 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96931192 TGGCACT-AGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
96931220 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
96931235 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
27 17 0.25
28 20 0.29
29 32 0.46
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:96936095 original size:28 final size:27
Alignment explanation
Indices: 96936032--96936101 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
96936022 ATAGTGAGTC
96936032 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
96936059 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
96936087 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96936102 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:96943918 original size:28 final size:27
Alignment explanation
Indices: 96943855--96943924 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
96943845 ATAGTGAGTC
96943855 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
96943882 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
96943910 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96943925 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:96947997 original size:24 final size:24
Alignment explanation
Indices: 96947965--96948193 Score: 171
Period size: 24 Copynumber: 9.5 Consensus size: 24
96947955 AAGGAAATTT
* * *
96947965 GCACCCATAGTGCCATGTTAACCC
1 GCACACATAGTGCCATGTAAATCC
* *
96947989 GCACACATAGTGCCTTAGT-AATTC
1 GCACACATAGTGCCAT-GTAAATCC
* * * *
96948013 ACATACATATTGACAT-TCAAATCC
1 GCACACATAGTGCCATGT-AAATCC
*
96948037 GCACACATAGTGCCATATAAATCC
1 GCACACATAGTGCCATGTAAATCC
** *
96948061 GCACACATAGTGCCATACAAATTC
1 GCACACATAGTGCCATGTAAATCC
* *
96948085 GCACACATAGTGCCTTAGT-AATTC
1 GCACACATAGTGCCAT-GTAAATCC
* * * *
96948109 ACATACATATTGACAT-TCAAATCC
1 GCACACATAGTGCCATGT-AAATCC
* *
96948133 GCACACATAGTGCCATATAAATTC
1 GCACACATAGTGCCATGTAAATCC
**
96948157 GCACACATAGTGCCAT-TCAAATTA
1 GCACACATAGTGCCATGT-AAATCC
96948181 GCACACATAGTGC
1 GCACACATAGTGC
96948194 TAAAGTCATT
Statistics
Matches: 165, Mismatches: 31, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
22 2 0.01
23 1 0.01
24 158 0.96
25 4 0.02
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCATGTAAATCC
Found at i:96948047 original size:48 final size:48
Alignment explanation
Indices: 96947987--96948193 Score: 247
Period size: 48 Copynumber: 4.3 Consensus size: 48
96947977 CCATGTTAAC
* * *
96947987 CCGCACACATAGTGCCTTAGT-AATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-TAAATTCACACACATAGTGACATTCAAAT
* * * *
96948035 CCGCACACATAGTGCCATATAAATCCGCACACATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATATAAATTCACACACATAGTGACATTCAAAT
* * * *
96948083 TCGCACACATAGTGCCTTAGT-AATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-TAAATTCACACACATAGTGACATTCAAAT
* *
96948131 CCGCACACATAGTGCCATATAAATTCGCACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATATAAATTCACACACATAGTGACATTCAAAT
**
96948179 TAGCACACATAGTGC
1 CCGCACACATAGTGC
96948194 TAAAGTCATT
Statistics
Matches: 133, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.02
48 130 0.98
49 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (48 bp):
CCGCACACATAGTGCCATATAAATTCACACACATAGTGACATTCAAAT
Found at i:96948104 original size:96 final size:96
Alignment explanation
Indices: 96947988--96948193 Score: 385
Period size: 96 Copynumber: 2.1 Consensus size: 96
96947978 CATGTTAACC
96947988 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
96948053 ATAAATCCGCACACATAGTGCCATACAAATT
66 ATAAATCCGCACACATAGTGCCATACAAATT
96948084 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* *
96948149 ATAAATTCGCACACATAGTGCCATTCAAATT
66 ATAAATCCGCACACATAGTGCCATACAAATT
*
96948180 AGCACACATAGTGC
1 CGCACACATAGTGC
96948194 TAAAGTCATT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 107 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACACATAGTGCCATACAAATT
Found at i:96948643 original size:16 final size:16
Alignment explanation
Indices: 96948622--96948653 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96948612 ATTACTGCAA
96948622 ATAAACACACATATAT
1 ATAAACACACATATAT
*
96948638 ATAAACACATATATAT
1 ATAAACACACATATAT
96948654 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:96952085 original size:14 final size:14
Alignment explanation
Indices: 96952068--96952106 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
96952058 AGAAAGAAAA
96952068 TTTGGGAAAATACT
1 TTTGGGAAAATACT
*
96952082 TTTGGGAAAATATT
1 TTTGGGAAAATACT
96952096 TTTGGGAAAAT
1 TTTGGGAAAAT
96952107 TTGATTGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (14 bp):
TTTGGGAAAATACT
Found at i:96959521 original size:18 final size:18
Alignment explanation
Indices: 96959498--96959559 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
96959488 AATAGTTTAG
96959498 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
96959516 TTATTCAATATAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
*
96959537 TTATTCAGTAACTATCAA
1 TTATTCAATAACTATCAA
96959555 TTATT
1 TTATT
96959560 TAGTATAGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 17 0.50
19 3 0.09
20 3 0.09
21 11 0.32
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:96959569 original size:39 final size:39
Alignment explanation
Indices: 96959433--96959559 Score: 182
Period size: 39 Copynumber: 3.3 Consensus size: 39
96959423 ATCAAAAATA
* *
96959433 ATCAGTTATTCAGTACAGTAATTTAGTTATTCAGTAACT
1 ATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACT
* * * * *
96959472 ATCAAATATTCAATGCAATAGTTTAGTTATTCAATAACT
1 ATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACT
*
96959511 ATCAATTATTCAATATAGTAATTTAGTTATTCAGTAACT
1 ATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACT
96959550 ATCAATTATT
1 ATCAATTATT
96959560 TAGTATAGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (39 bp):
ATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACT
Found at i:96960669 original size:16 final size:17
Alignment explanation
Indices: 96960646--96960697 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
96960636 TATTATATAA
96960646 TTATAATAAATATCTAT
1 TTATAATAAATATCTAT
* **
96960663 TTA-AATAATTATAGA-
1 TTATAATAAATATCTAT
*
96960678 TAATAATAAATATCTAT
1 TTATAATAAATATCTAT
96960695 TTA
1 TTA
96960698 CTTTAATAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 4
0.68 0.22 0.11
Matches are distributed among these distances:
15 2 0.08
16 18 0.72
17 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (17 bp):
TTATAATAAATATCTAT
Found at i:96966335 original size:29 final size:29
Alignment explanation
Indices: 96966293--96966374 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
96966283 TTATTTTTTT
96966293 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
96966322 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
96966351 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
96966375 TATCTCGTCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:96971083 original size:40 final size:36
Alignment explanation
Indices: 96970979--96971083 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 36
96970969 ATCACGATTT
*
96970979 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAAACTA
**
96971016 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TA-AAACTA
*
96971056 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
96971084 TTATAATTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
37 28 0.47
39 4 0.07
40 27 0.46
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (36 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAAACTA
Found at i:96979070 original size:36 final size:36
Alignment explanation
Indices: 96979024--96979127 Score: 129
Period size: 36 Copynumber: 2.8 Consensus size: 36
96979014 TATCACGATT
96979024 TGCACAAATGCCTTCGGGTCTTAGCCCGGA-TAAAAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGAGTAAAAC
**
96979060 TGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGA-GTAAAAC
*
96979098 TAGCACAATTGCCTTCGGGTCTTAACCCGG
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGG
96979128 TTATAATTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
36 29 0.48
38 7 0.12
39 24 0.40
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (36 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGAGTAAAAC
Found at i:96982647 original size:39 final size:40
Alignment explanation
Indices: 96982469--96982651 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
96982459 CCGCACCAAG
* * * * * * * *
96982469 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
96982509 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
96982549 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
96982589 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
96982628 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
96982652 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Done.