Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 337 of 444
Found at i:97342096 original size:5 final size:5
Alignment explanation
Indices: 97342081--97342125 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
97342071 TCTGAGTCCA
97342081 TTTATT TTTAT TTTAT TTTATT TTTATT TTTAT TTTA- TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTAT TTTAT TTT
97342126 TCTTAAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.11
5 18 0.49
6 15 0.41
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:97342097 original size:11 final size:11
Alignment explanation
Indices: 97342081--97342120 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
97342071 TCTGAGTCCA
97342081 TTTATTTTTAT
1 TTTATTTTTAT
97342092 TTTA-TTTTATT
1 TTTATTTTTA-T
97342103 TTTATTTTTAT
1 TTTATTTTTAT
97342114 TTTATTT
1 TTTATTT
97342121 ATTTTTCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 17 0.63
12 5 0.19
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:97342106 original size:22 final size:21
Alignment explanation
Indices: 97342081--97342126 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 21
97342071 TCTGAGTCCA
97342081 TTTATTTTTATTTTATTTTATT
1 TTTATTTTTATTTTA-TTTATT
97342103 TTTATTTTTATTTTATTTATT
1 TTTATTTTTATTTTATTTATT
97342124 TTT
1 TTT
97342127 CTTAAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTATTTTTATTTTATTTATT
Found at i:97348258 original size:37 final size:37
Alignment explanation
Indices: 97348205--97348307 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
97348195 CGAATAGTCC
*
97348205 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
97348242 CCACACGCAGTCATCGGGTCTTACACGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
97348279 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
97348308 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:97348506 original size:48 final size:48
Alignment explanation
Indices: 97348448--97349015 Score: 1030
Period size: 48 Copynumber: 11.9 Consensus size: 48
97348438 ATATACACAC
*
97348448 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348496 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
97348544 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348592 A-CTCATACATATTTCACACTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
97348639 ACCTCATACATATTTCACACTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
97348687 ACCTCATACATATTTCACACTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348735 ATCTCATACATATTTCACACTGGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348783 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348831 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
97348879 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
97348927 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
97348975 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
97349016 CACATATATA
Statistics
Matches: 509, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 0.09
48 463 0.91
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:97352372 original size:40 final size:40
Alignment explanation
Indices: 97352316--97352664 Score: 524
Period size: 40 Copynumber: 9.0 Consensus size: 40
97352306 GAATACACAT
* * * *
97352316 CACCAGCATGATTGCTCTTCGGGACCTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
97352356 CACCAGCATGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
97352396 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
97352436 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
97352475 CACCA-CACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
97352513 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG------
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
97352547 -A-CAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
97352585 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
97352625 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
97352664 C
1 C
97352665 TCTCAATTCT
Statistics
Matches: 287, Mismatches: 12, Indels: 21
0.90 0.04 0.07
Matches are distributed among these distances:
32 30 0.10
33 1 0.00
38 37 0.13
39 59 0.21
40 160 0.56
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:97354009 original size:37 final size:37
Alignment explanation
Indices: 97353949--97354050 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
97353939 CGAATAGTCC
*
97353949 CCACACGTAGTTAT-GGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
97353985 CCACACGTAGCCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
97354022 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
97354051 ATATATTTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 12 0.20
37 47 0.80
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:97354251 original size:48 final size:48
Alignment explanation
Indices: 97354192--97354646 Score: 683
Period size: 48 Copynumber: 9.8 Consensus size: 48
97354182 TATACACACT
*
97354192 TCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
97354240 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
97354288 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
97354336 -CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
97354383 TCTCATACATATTTCACACTAG-CATTCGGCTTTACCACATATACACA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* ** * * *
97354430 TCTCATACATA-TTCGCTTTA-CCA--C--ATATA-CACATCT-CATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* *
97354470 ---CATA-TT---TCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
97354511 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
97354559 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
97354607 TCTCATACATATTTCACACTAGCCATTTGGCTTTACCACA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
97354647 CACATATATA
Statistics
Matches: 371, Mismatches: 20, Indels: 32
0.88 0.05 0.08
Matches are distributed among these distances:
34 6 0.02
35 3 0.01
36 1 0.00
37 5 0.01
39 3 0.01
40 9 0.02
41 10 0.03
42 3 0.01
44 5 0.01
45 1 0.00
46 8 0.02
47 82 0.22
48 235 0.63
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
Found at i:97354449 original size:33 final size:34
Alignment explanation
Indices: 97354406--97354475 Score: 133
Period size: 33 Copynumber: 2.1 Consensus size: 34
97354396 TCACACTAGC
97354406 ATTCGGCTTTACCACATATACACATCTCATACAT
1 ATTCGGCTTTACCACATATACACATCTCATACAT
97354440 ATTC-GCTTTACCACATATACACATCTCATACAT
1 ATTCGGCTTTACCACATATACACATCTCATACAT
97354473 ATT
1 ATT
97354476 TCACATTAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 32 0.89
34 4 0.11
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (34 bp):
ATTCGGCTTTACCACATATACACATCTCATACAT
Found at i:97354456 original size:80 final size:82
Alignment explanation
Indices: 97354359--97354523 Score: 289
Period size: 81 Copynumber: 2.0 Consensus size: 82
97354349 CACACTAGCC
*
97354359 ATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG-CATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
97354423 ATACACATCTCATACAT
66 ATACACATCTCATACAT
*
97354440 ATTC-GCTTTACCACATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
*
97354504 ATACATATCTCATACAT
66 ATACACATCTCATACAT
97354521 ATT
1 ATT
97354524 TCACACTAGC
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
80 39 0.49
81 41 0.51
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (82 bp):
ATTCGGCTTTACCACATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
ATACACATCTCATACAT
Found at i:97354475 original size:128 final size:129
Alignment explanation
Indices: 97354312--97354571 Score: 470
Period size: 128 Copynumber: 2.0 Consensus size: 129
97354302 CACACTAGCC
*
97354312 ATTCGGCTTTACCACATATACATACTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
1 ATTCGGCTTTACCACATATACACACTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
97354377 TACATATCTCATACATATTTCACACTAG-CATTCGGCTTTACCACATATACACATCTCATACAT
66 TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACACATCTCATACAT
*
97354440 ATTC-GCTTTACCACATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACACA-CTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
*
97354504 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
65 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACACATCTCATACAT
97354569 ATT
1 ATT
97354572 TCACACTAGC
Statistics
Matches: 127, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
127 18 0.14
128 72 0.57
129 37 0.29
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (129 bp):
ATTCGGCTTTACCACATATACACACTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
TACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACACATCTCATACAT
Found at i:97361965 original size:15 final size:15
Alignment explanation
Indices: 97361945--97361975 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97361935 AAAAGTTATT
97361945 ATTTTTATTTTTAAA
1 ATTTTTATTTTTAAA
97361960 ATTTTTATTTTTAAA
1 ATTTTTATTTTTAAA
97361975 A
1 A
97361976 AGAGAGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTTATTTTTAAA
Found at i:97366747 original size:59 final size:59
Alignment explanation
Indices: 97366680--97366796 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
97366670 AATTTAGCTC
*
97366680 GTTTGAGTTAGATTTAGTTGCTCTCCAGCTTATTTCTTTTATCATTTTAATAAACTAAT
1 GTTTGAGTTAAATTTAGTTGCTCTCCAGCTTATTTCTTTTATCATTTTAATAAACTAAT
97366739 GTTTGAGTTAAATTTAGTTGCTCTCCAGCTTATTTCTTTTATCATTTTAATAAACTAA
1 GTTTGAGTTAAATTTAGTTGCTCTCCAGCTTATTTCTTTTATCATTTTAATAAACTAA
97366797 GTATTGGCAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (59 bp):
GTTTGAGTTAAATTTAGTTGCTCTCCAGCTTATTTCTTTTATCATTTTAATAAACTAAT
Found at i:97370342 original size:40 final size:40
Alignment explanation
Indices: 97370283--97370424 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
97370273 AAATTGAATG
* * *
97370283 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
97370323 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
97370363 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
97370403 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
97370425 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:97370425 original size:40 final size:39
Alignment explanation
Indices: 97370322--97370450 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
97370312 TGCTGGAAAT
* * *
97370322 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
97370362 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
97370402 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
97370442 TATATCCGG
1 TATATCCGG
97370451 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:97378356 original size:40 final size:40
Alignment explanation
Indices: 97378290--97378456 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
97378280 AAATTGAATG
* * *
97378290 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
97378329 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
97378369 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
97378409 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
97378449 ATATCCGG
1 ATATCCGG
97378457 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:97380558 original size:46 final size:45
Alignment explanation
Indices: 97380479--97380646 Score: 133
Period size: 46 Copynumber: 3.6 Consensus size: 45
97380469 TATTCGATGT
* * *
97380479 ATGTCCCAGACATGCCTTACACTTG-TTTACGTCTCGAGGCCATTGC
1 ATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGCCA-TGC
* * ***
97380525 ATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGTTGATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGA-GGCCATG-C
* * * * * *
97380572 ATCTCCCAAACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGC
1 ATGTCCCAGACATG-TCTTACACTAGCTCTCGT-CTCGAGGCC-ATGC
97380619 ATGTCCCAGACATGTCTTACACTAGCTC
1 ATGTCCCAGACATGTCTTACACTAGCTC
97380647 ACACACGAAT
Statistics
Matches: 94, Mismatches: 22, Indels: 12
0.73 0.17 0.09
Matches are distributed among these distances:
46 45 0.48
47 30 0.32
48 18 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCCATGC
Found at i:97383901 original size:53 final size:53
Alignment explanation
Indices: 97383718--97383964 Score: 229
Period size: 55 Copynumber: 4.7 Consensus size: 53
97383708 ATTAGGGTTT
* * *
97383718 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
97383773 AAGGATATCATGTAAGACCATGTCAAGACATGTCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
97383828 AAAGG-TCCCATGTAAGACCATGCCGAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
97383881 AAGGATACCATATAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* *
97383930 AAGGATACCATGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
97383965 ATGTTAAGGT
Statistics
Matches: 161, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 31 0.19
51 1 0.01
52 8 0.05
53 43 0.27
54 8 0.05
55 66 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:97383924 original size:108 final size:110
Alignment explanation
Indices: 97383725--97383925 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
97383715 TTTAAGGATA
* *
97383725 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGATACCATATAAGA
* *
97383790 CCATGTCAAGACATGTCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
97383835 CCATGTAAGACCATGCCGAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATATAAG
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGAAAGGATACCATATAAG
* *
97383897 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
97383926 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGATACCATATAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:97384186 original size:16 final size:16
Alignment explanation
Indices: 97384165--97384195 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97384155 ATAAATTTGA
97384165 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
97384181 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
97384196 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:97385786 original size:26 final size:26
Alignment explanation
Indices: 97385704--97385817 Score: 111
Period size: 26 Copynumber: 4.4 Consensus size: 26
97385694 AGGATGTACT
*
97385704 TTATCTAGCAGGCCTTGAGTCAGTGA
1 TTATCTAGCAGGCCTTGAGCCAGTGA
* *
97385730 TTATCGAGTAGGCCTTGAGCCAGTGA
1 TTATCTAGCAGGCCTTGAGCCAGTGA
* * * *
97385756 TTATTTAGCAGGCCTTCAGCCGGTGT
1 TTATCTAGCAGGCCTTGAGCCAGTGA
* * * * *
97385782 TTATTTAACAGGTCTTGAGCTAATGA
1 TTATCTAGCAGGCCTTGAGCCAGTGA
*
97385808 TTATTTAGCA
1 TTATCTAGCA
97385818 AGTTGGTGAC
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (26 bp):
TTATCTAGCAGGCCTTGAGCCAGTGA
Found at i:97388274 original size:29 final size:29
Alignment explanation
Indices: 97388242--97388306 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
97388232 GTGACGAGAT
97388242 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97388271 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
97388300 CGGCACT
1 TGGCACT
97388307 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:97388586 original size:33 final size:33
Alignment explanation
Indices: 97388544--97388612 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
97388534 ATGCTCGGGG
97388544 TTGAGCTTGGTAAGCTTTAGATCTATGTGATGA
1 TTGAGCTTGGTAAGCTTTAGATCTATGTGATGA
97388577 TTGAGCTTGGTAAGCTTTAGATCTATGTGATGA
1 TTGAGCTTGGTAAGCTTTAGATCTATGTGATGA
97388610 TTG
1 TTG
97388613 CAATTGTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.41
Consensus pattern (33 bp):
TTGAGCTTGGTAAGCTTTAGATCTATGTGATGA
Found at i:97396308 original size:29 final size:29
Alignment explanation
Indices: 97396275--97396339 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
97396265 GTGACGAGAT
97396275 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
97396304 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
97396333 CGGCACT
1 TGGCACT
97396340 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:97399294 original size:40 final size:39
Alignment explanation
Indices: 97399250--97399392 Score: 178
Period size: 39 Copynumber: 3.6 Consensus size: 39
97399240 GTTCAAAACA
* * ** * *
97399250 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
97399290 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
97399330 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
97399369 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
97399393 CTCGAACATT
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 50 0.56
40 40 0.44
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:97406721 original size:40 final size:40
Alignment explanation
Indices: 97406677--97406781 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
97406667 GTTCAAAACA
* * ***
97406677 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * *
97406717 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * *
97406757 CCTTCGAG-CTTAGCCCGGATATCAC
1 CCTTCGGGACATAACCCGGATATCAC
97406782 TCGAACATTC
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 16 0.29
40 39 0.71
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
Found at i:97417561 original size:43 final size:42
Alignment explanation
Indices: 97417496--97417609 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
97417486 AGCTCGTACA
* * * *
97417496 ATGCCATATCCCAAATATGGTCTTACATGTAATC-ACATATCG
1 ATGCCATGTCCCAGATATGGTCTTACATGAAATCGA-ATAACG
* *
97417538 ATGCCACTGTCCCAGATAGGGTCTTACATGAAATCGATTAACG
1 ATGCCA-TGTCCCAGATATGGTCTTACATGAAATCGAATAACG
*
97417581 ATGCCAATGTCCCAGACATGGTCTTACAT
1 ATGCC-ATGTCCCAGATATGGTCTTACAT
97417610 CTTATCGTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 6 0.10
43 53 0.87
44 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGATATGGTCTTACATGAAATCGAATAACG
Found at i:97421250 original size:29 final size:29
Alignment explanation
Indices: 97421215--97421318 Score: 129
Period size: 29 Copynumber: 3.6 Consensus size: 29
97421205 GTAATCGATT
*
97421215 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCATATGATTTAAGC
* ** *
97421244 TCGCACACATAGTGCCATACAATTTAAGT
1 TCGCACACTTAGTGCCATATGATTTAAGC
*
97421273 TTGCACACTTAGTGCCATATG-TTTCAAGC
1 TCGCACACTTAGTGCCATATGATTT-AAGC
*
97421302 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
97421319 ATCTTGTCAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 3 0.05
29 61 0.95
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATGATTTAAGC
Found at i:97430184 original size:28 final size:28
Alignment explanation
Indices: 97430152--97430220 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97430142 GCGTAGATCA
97430152 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97430180 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97430208 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97430221 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97436505 original size:20 final size:20
Alignment explanation
Indices: 97436480--97436517 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97436470 GTTTATTCGC
*
97436480 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97436500 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97436518 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97440043 original size:29 final size:29
Alignment explanation
Indices: 97440008--97440111 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 29
97439998 GTAATCGATT
*
97440008 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCATATGATTTAAGC
* ** *
97440037 TCGCACACATAGTGCCATACAATTTAAGT
1 TCGCACACTTAGTGCCATATGATTTAAGC
97440066 TCGCACACTTAGTGCCATATG-TTTCAAGC
1 TCGCACACTTAGTGCCATATGATTT-AAGC
*
97440095 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
97440112 ATCTTGTCAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 3 0.05
29 61 0.95
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATGATTTAAGC
Found at i:97442416 original size:41 final size:41
Alignment explanation
Indices: 97442336--97442422 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
97442326 AATTGTTGTA
* * *
97442336 TGAATTGCACATAAGTGCCCCTGTTTGTACTTTGATACCCT
1 TGAATTCCACATAAGTGCCCCTGTTTGTACTTAGATACCCC
*
97442377 TGAATTCCACATACGTGCCCCTGTTTGTACTTCAG-TACCCC
1 TGAATTCCACATAAGTGCCCCTGTTTGTACTT-AGATACCCC
97442418 TGAAT
1 TGAAT
97442423 GTAGATTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 40 0.98
42 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (41 bp):
TGAATTCCACATAAGTGCCCCTGTTTGTACTTAGATACCCC
Found at i:97443343 original size:12 final size:12
Alignment explanation
Indices: 97443326--97443351 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97443316 GCTGTTACAT
97443326 GGCCTAGCACAC
1 GGCCTAGCACAC
97443338 GGCCTAGCACAC
1 GGCCTAGCACAC
97443350 GG
1 GG
97443352 GCGTGTGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:97446019 original size:33 final size:33
Alignment explanation
Indices: 97445977--97446045 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
97445967 CATATCTGGG
*
97445977 ATATGGCATCTATATGAGACTTCGTGTAAGACC
1 ATATGGCATCGATATGAGACTTCGTGTAAGACC
97446010 ATATGGCATCGATATGAGACTTCGTGTAAGACC
1 ATATGGCATCGATATGAGACTTCGTGTAAGACC
97446043 ATA
1 ATA
97446046 GCTGGGCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (33 bp):
ATATGGCATCGATATGAGACTTCGTGTAAGACC
Found at i:97459044 original size:15 final size:15
Alignment explanation
Indices: 97459002--97459072 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
97458992 TGATATTGTC
*
97459002 TCTTGGATTTCTGTA
1 TCTTGGATTTCTTTA
97459017 TCTTGGATTTCTTTA
1 TCTTGGATTTCTTTA
* *
97459032 TCTTAGATTTCTTTG
1 TCTTGGATTTCTTTA
*
97459047 T-TCTGGACTTCTTTA
1 TCT-TGGATTTCTTTA
*
97459062 TCTTGGTTTTC
1 TCTTGGATTTC
97459073 ATGTCATCTC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
14 1 0.02
15 44 0.96
16 1 0.02
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.58
Consensus pattern (15 bp):
TCTTGGATTTCTTTA
Found at i:97465801 original size:2 final size:2
Alignment explanation
Indices: 97465794--97465829 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97465784 TTATAACCTC
97465794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97465830 GTTCACTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97466068 original size:63 final size:63
Alignment explanation
Indices: 97465969--97466089 Score: 197
Period size: 63 Copynumber: 1.9 Consensus size: 63
97465959 GAGCTGAACA
* * *
97465969 ATAGTGTGATGGTGCTCCGACTAATTCCAACCTTCACGAACTTCTGAGCACTATAAAACATGG
1 ATAGTGTGATGGTGCTACGACTAATTCCAAACTTCACGAACTTCCGAGCACTATAAAACATGG
* *
97466032 ATAGTGTGATGGTGCTATGACTAATTCCAAACTTCACGAGCTTCCGAGCACTATAAAA
1 ATAGTGTGATGGTGCTACGACTAATTCCAAACTTCACGAACTTCCGAGCACTATAAAA
97466090 TAGAGGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (63 bp):
ATAGTGTGATGGTGCTACGACTAATTCCAAACTTCACGAACTTCCGAGCACTATAAAACATGG
Found at i:97469331 original size:40 final size:40
Alignment explanation
Indices: 97469283--97469470 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
97469273 GCTACTCACT
97469283 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
97469323 CAATTGCCTTCGAGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
97469363 CAAATGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
97469403 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
97469443 CAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
97469471 CAATCCGAAT
Statistics
Matches: 140, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.09
40 127 0.91
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:97469402 original size:80 final size:80
Alignment explanation
Indices: 97469260--97469470 Score: 329
Period size: 80 Copynumber: 2.7 Consensus size: 80
97469250 CCTTCGGGGT
* *
97469260 TTAG-CCGGATATAGCT-ACTCACTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
97469323 CAATTGCCTTCGAGAC
65 CAAATGCCTTCGAGAC
* * *
97469339 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
97469404 AAATGCCTTCGGGAC
66 AAATGCCTTCGAGAC
97469419 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
97469471 CAATCCGAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 17 0.14
80 103 0.86
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAATGCCTTCGAGAC
Found at i:97479745 original size:2 final size:2
Alignment explanation
Indices: 97479738--97479762 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97479728 TCGATCGGAG
97479738 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
97479763 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97479830 original size:29 final size:29
Alignment explanation
Indices: 97479796--97479927 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
97479786 TACTCGATTT
* * *
97479796 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
97479825 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
97479854 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
97479883 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
97479912 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97479928 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:97479888 original size:58 final size:59
Alignment explanation
Indices: 97479795--97479927 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
97479785 ATACTCGATT
* * * *
97479795 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
97479853 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
97479912 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
97479928 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:97487500 original size:2 final size:2
Alignment explanation
Indices: 97487493--97487517 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97487483 TCGATCGGAG
97487493 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
97487518 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97487585 original size:29 final size:29
Alignment explanation
Indices: 97487551--97487682 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
97487541 TACTCGATTT
* * *
97487551 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
97487580 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
97487609 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
97487638 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
97487667 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97487683 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:97487643 original size:58 final size:59
Alignment explanation
Indices: 97487550--97487682 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
97487540 ATACTCGATT
* * * *
97487550 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
97487608 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
97487667 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
97487683 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:97495333 original size:29 final size:29
Alignment explanation
Indices: 97495299--97495430 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
97495289 TACTCGATTT
* * *
97495299 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
97495328 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
97495357 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
97495386 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
97495415 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97495431 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:97495391 original size:58 final size:59
Alignment explanation
Indices: 97495298--97495430 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
97495288 ATACTCGATT
* * * *
97495298 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
97495356 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
97495415 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
97495431 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:97503460 original size:27 final size:27
Alignment explanation
Indices: 97503398--97503466 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
97503388 TTTAAAACCC
*
97503398 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTC-GTAATTTTGCTCTT
97503425 TAGGGGTAATTTCGTAATTTTGCTCTT
1 TAGGGGTAATTTCGTAATTTTGCTCTT
97503452 TAGGGGTAATTTCGT
1 TAGGGGTAATTTCGT
97503467 GATCTACGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (27 bp):
TAGGGGTAATTTCGTAATTTTGCTCTT
Found at i:97505115 original size:20 final size:20
Alignment explanation
Indices: 97505092--97505129 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97505082 CACATCCAAA
*
97505092 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97505112 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97505130 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97511440 original size:28 final size:28
Alignment explanation
Indices: 97511394--97511462 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97511384 TTTAAAACCC
*
97511394 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97511421 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97511449 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97511463 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97514963 original size:40 final size:39
Alignment explanation
Indices: 97514906--97515088 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
97514896 TCGAATGATG
* *
97514906 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
97514946 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
97514985 TTCC-GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
97515023 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
97515063 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
97515089 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 18
0.83 0.05 0.12
Matches are distributed among these distances:
37 17 0.13
38 17 0.13
39 18 0.14
40 66 0.52
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:97515044 original size:77 final size:80
Alignment explanation
Indices: 97514907--97515086 Score: 235
Period size: 77 Copynumber: 2.3 Consensus size: 80
97514897 CGAATGATGT
* *
97514907 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
97514972 TGCGAGTTACTA-ATT
66 TGCGAGTTACTATA-A
* * **
97514987 CC-GGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
97515048 GTGCGAGTTACTATAA
65 GTGCGAGTTACTATAA
*
97515064 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
97515087 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 44 0.50
78 22 0.25
79 19 0.22
80 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:97523138 original size:39 final size:41
Alignment explanation
Indices: 97523038--97523220 Score: 204
Period size: 39 Copynumber: 4.6 Consensus size: 41
97523028 TCGAATGATG
* * *
97523038 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGA-TTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
97523077 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
97523117 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
97523156 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
97523195 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
97523221 AAAGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 1 0.01
39 79 0.64
40 34 0.27
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:97523238 original size:79 final size:79
Alignment explanation
Indices: 97523073--97523239 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 79
97523063 GCTAAGTGAT
* *
97523073 TATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCA
1 TATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
***
97523138 TTGGTGCGAGTCAC
66 TTGGAAAGAGTCAC
* * * *
97523152 TAAATCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGG
1 TATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGG
*
97523215 CATTTGAAAGAGT-AGC
64 CATTGGAAAGAGTCA-C
97523231 TATATCCGG
1 TATATCCGG
97523240 TTAAACTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
77 2 0.03
78 33 0.45
79 39 0.53
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAAAGAGTCAC
Found at i:97528667 original size:55 final size:55
Alignment explanation
Indices: 97528551--97528681 Score: 138
Period size: 55 Copynumber: 2.4 Consensus size: 55
97528541 TGGCCGTGGG
* ** ** *
97528551 CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCATGCCTTGGAACCTTGGC
1 CGAACCTGTCAAATTAACACGGGCGTGCGACACGCCCATGCCAAGCAACCTTGGC
* * * *
97528606 CAAACCTGTCAAATTAACACGGGTGTGCGACACGCCCGTGCCAAGCAA-CTATGGT
1 CGAACCTGTCAAATTAACACGGGCGTGCGACACGCCCATGCCAAGCAACCT-TGGC
* *
97528661 CGAACCTGTTAGATTAACACG
1 CGAACCTGTCAAATTAACACG
97528682 AGCATGGGAC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
54 2 0.03
55 60 0.97
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.17
Consensus pattern (55 bp):
CGAACCTGTCAAATTAACACGGGCGTGCGACACGCCCATGCCAAGCAACCTTGGC
Found at i:97530572 original size:6 final size:6
Alignment explanation
Indices: 97530558--97530616 Score: 86
Period size: 6 Copynumber: 10.0 Consensus size: 6
97530548 GATGTTTAAA
*
97530558 TTTA-T TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
97530605 TATT-TT TTTATT
1 T-TTATT TTTATT
97530617 AATTTCACCT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
5 6 0.12
6 41 0.84
7 2 0.04
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:97532524 original size:13 final size:13
Alignment explanation
Indices: 97532506--97532544 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
97532496 AAGCAATCGT
97532506 ACACGGGCGTGTC
1 ACACGGGCGTGTC
97532519 ACACGGGCGTGTC
1 ACACGGGCGTGTC
97532532 ACACGGGCGTGTC
1 ACACGGGCGTGTC
97532545 CTTGTCAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:97533765 original size:11 final size:11
Alignment explanation
Indices: 97533749--97533793 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
97533739 TAGTAAATAT
97533749 TATTTTATTAA
1 TATTTTATTAA
*
97533760 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
97533773 TATTTTATTAT
1 TATTTTATTAA
97533784 TATTTTATTA
1 TATTTTATTA
97533794 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:97536811 original size:12 final size:12
Alignment explanation
Indices: 97536791--97536820 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
97536781 TAGCCCTATA
*
97536791 CAGTATCAGTAG
1 CAGTGTCAGTAG
97536803 CAGTGTCAGTAG
1 CAGTGTCAGTAG
97536815 CAGTGT
1 CAGTGT
97536821 GGGCCTTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (12 bp):
CAGTGTCAGTAG
Found at i:97537173 original size:27 final size:26
Alignment explanation
Indices: 97537111--97537161 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
97537101 TTATACATAA
*
97537111 CATAGGGGTATATCAGTCATTTTACCT
1 CATAGGGGTATAACAGTCATTTTA-CT
*
97537138 CATAGGGGTATAACGGTCATTTTA
1 CATAGGGGTATAACAGTCATTTTA
97537162 TCAGTATGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (26 bp):
CATAGGGGTATAACAGTCATTTTACT
Found at i:97544173 original size:48 final size:45
Alignment explanation
Indices: 97544068--97544193 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 45
97544058 ATGGATGTGT
*
97544068 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTAAACGAGA
*
97544114 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTAA-ACGAGA
*
97544162 GCTAGTATAAGACATGTCTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
97544194 GCCTCGAGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
45 5 0.07
46 17 0.24
47 29 0.41
48 20 0.28
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAAACGAGA
Found at i:97544316 original size:49 final size:49
Alignment explanation
Indices: 97544071--97544432 Score: 259
Period size: 49 Copynumber: 7.6 Consensus size: 49
97544061 GATGTGTGCT
* * * *
97544071 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
* * * * * * *
97544117 AGTGTAAGACCATGTCTGGGACATGGCATCGACAT-TA-AGACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
* * * * * * *
97544165 AGTATAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATACGTAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
* * * * *
97544213 AGTGTAAGACCTGTCTAGGACATGGCATCAG-CTTG--ACATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
97544257 AGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-CGATAGCA-GAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCGATA-CATGAAAGCC
* * * * *
97544306 AGTGTAAGACCTGTTTGGGACATAGCATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
* * * * **
97544355 AGTGTAAGACCCGTCTGGGACATGGCATCGACTTAGATGTATG--AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
* *
97544402 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
97544433 ACATCGTACC
Statistics
Matches: 252, Mismatches: 47, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
44 30 0.12
45 1 0.00
46 22 0.09
47 41 0.16
48 75 0.30
49 83 0.33
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATACATGAAAGCC
Found at i:97544339 original size:142 final size:142
Alignment explanation
Indices: 97544112--97544435 Score: 372
Period size: 142 Copynumber: 2.3 Consensus size: 142
97544102 CACATTATGA
** * *
97544112 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACGAGAGCTAGTATAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGAAGACGAAAGCCAGTATAAGACAT
* *
97544177 GTCTGGGACATGCATCGGCCTCGAGATACGTAAG-CTAGTGTAAGACCTGTCTAGGACATGGCAT
66 GTCTGGGACATGCATCGGCCTCGAGATACGAAAGTC-AGTGTAAGACCCGTCTAGGACATGGCAT
97544241 C-AGCTT-GA-CAT
130 CGA-CTTAGAGCAT
* * * *
97544252 GTGTCAGTGTAAGACC-TGTCTGGGACATGGCATCGGCACCGATAG-CAGAAAGCCAGTGTAAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA-CGA-AGAC-GAAAGCCAGTATAAGA
* * * * * *
97544315 CCTGTTTGGGACATAGCATTGGCCTCGATATATGAAAGTCAGTGTAAGACCCGTCTGGGACATGG
63 CATGTCTGGGACAT-GCATCGGCCTCGAGATACGAAAGTCAGTGTAAGACCCGTCTAGGACATGG
*
97544380 CATCGACTTAGATGTAT
127 CATCGACTTAGA-GCAT
* *
97544397 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
97544436 TCGTACCCTA
Statistics
Matches: 152, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
139 21 0.14
140 16 0.11
141 27 0.18
142 49 0.32
143 4 0.03
145 16 0.11
146 19 0.12
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (142 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGAAGACGAAAGCCAGTATAAGACAT
GTCTGGGACATGCATCGGCCTCGAGATACGAAAGTCAGTGTAAGACCCGTCTAGGACATGGCATC
GACTTAGAGCAT
Found at i:97548313 original size:94 final size:91
Alignment explanation
Indices: 97548197--97548411 Score: 227
Period size: 94 Copynumber: 2.3 Consensus size: 91
97548187 ACGAGGGCTC
* *
97548197 GTGTAAGACGTGTCTGGGACATGCATCAGCCGC-ATCATGATAGCCCGTGTAAGACCACATCTGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCGCGATCATGATAGCCAGTGTAAG-CCACATCTGG
97548261 GACATGGCATC-AGCGTAGAGGTGAGTGCCA
65 GACAT-GCATCGA-C-TA-AGGTGAGTGCCA
* * * * * * ***
97548291 GTGTAAGACATGTCTGAGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGTCGTGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCGCGATCATGATAGCCAGTGTAAGCCACATCTGGG
* ** *
97548356 ACATGCATCGACTAAGTTTTGTGCTA
66 ACATGCATCGACTAAGGTGAGTGCCA
*
97548382 GTGTAAGACATGTCTGGGACATGTATCAGC
1 GTGTAAGACATGTCTGGGACATGCATCAGC
97548412 ACATATACAC
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
91 35 0.35
92 2 0.02
93 6 0.06
94 41 0.41
95 17 0.17
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (91 bp):
GTGTAAGACATGTCTGGGACATGCATCAGCCGCGATCATGATAGCCAGTGTAAGCCACATCTGGG
ACATGCATCGACTAAGGTGAGTGCCA
Found at i:97555718 original size:47 final size:47
Alignment explanation
Indices: 97555545--97555861 Score: 136
Period size: 48 Copynumber: 6.7 Consensus size: 47
97555535 ATGGGGTTAT
* * * * * *
97555545 GTGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGA
1 GTGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGTAGA
* * * * *
97555592 GATGAGGGCTAGTGTAAGA-CGTGTCTGAGACAT-GCATCAGCCGCATCA
1 G-TGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAG-CGTA-GA
* * *
97555640 -TGA-TAGCCGGTGTAAGACCACGTCTGGGACATGGCATCAGCGTAGA
1 GTGAGT-GCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGTAGA
* **
97555686 GGTGAGTGCCATTGTAAGA-CATGTCTGAGACAT-GCATGGGC-TA-A
1 -GTGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGTAGA
* * * * *
97555730 GTTTCA-TGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCGCGTATA
1 G--TGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATC--AGCGTAGA
** * * * * * *
97555778 CACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 -GTGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGTAGA
* * *
97555826 TGGAGAGAGCCAGCGTAAGACCATGTCT-AGGACATG
1 --GTGAGTGCCAGTGTAAGACCATGTCTGA-GACATG
97555862 CCAGCGGCAA
Statistics
Matches: 205, Mismatches: 44, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 4 0.02
46 28 0.14
47 43 0.21
48 52 0.25
49 43 0.21
50 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
GTGAGTGCCAGTGTAAGACCATGTCTGAGACATGGCATCAGCGTAGA
Found at i:97555810 original size:49 final size:48
Alignment explanation
Indices: 97555737--97555862 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 48
97555727 TAAGTTTCAT
*
97555737 GCTAGTGTAAGA-CATGTCTGGGACATGCATCTG-CGCGTATACACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCGCG-ATACA-GAGA
* **
97555785 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGAGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCGCGATACAGAGA
* * *
97555834 GCCAGCGTAAGACCATGTCTAGGACATGC
1 GCTAGTGTAAGACCATGTCTGGGACATGC
97555863 CAGCGGCAAC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 14 0.21
49 42 0.62
50 9 0.13
51 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCGCGATACAGAGA
Found at i:97564996 original size:21 final size:20
Alignment explanation
Indices: 97564958--97564996 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97564948 CTCTTGAAAC
*
97564958 AGGGCACACGCCCGTGTGAA
1 AGGGCACACGCCCATGTGAA
*
97564978 AGGGCAACATGCCCATGTG
1 AGGGC-ACACGCCCATGTG
97564997 GTCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.28, G:0.33, T:0.13
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGAA
Found at i:97566585 original size:80 final size:80
Alignment explanation
Indices: 97566501--97566649 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
97566491 TATGGTAACC
* * * *
97566501 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
97566565 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
97566581 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
97566646 CCGG
66 CCGG
97566650 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:97566591 original size:40 final size:38
Alignment explanation
Indices: 97566542--97566649 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
97566532 ATCACGATTT
*
97566542 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
97566582 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
97566622 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
97566650 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:97569585 original size:46 final size:47
Alignment explanation
Indices: 97569452--97569711 Score: 173
Period size: 46 Copynumber: 5.6 Consensus size: 47
97569442 AGGGTATAAT
* * *
97569452 GCCGATGCCATATCCCAGGCATGATCTTACACTGGCTTA-TTCATCAA-
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTGGCTTACATC-TCAAG
** * * * * **
97569499 GTTGATGCCATATCCTAGACATGGTCTTACATTGAC--ACATCTTGTA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCAAG
* *
97569545 GCTGATG-CATGTCCCAGACATGTCTTACACTGGCTTACATCTCTAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
* * * * *
97569591 GCCGATG-CATGTCCCAAACATGTCTTACACTAGCTCT-CGTCACAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAG
* *
97569637 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-ATG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCAAG
* *
97569685 GCCAAT-ACATGTCCCAGACATGTCTTA
1 GCCGATGCCATGTCCCAGACATGTCTTA
97569712 TACTAGAATA
Statistics
Matches: 172, Mismatches: 32, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 65 0.38
47 56 0.33
48 24 0.14
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
Found at i:97569696 original size:94 final size:92
Alignment explanation
Indices: 97569548--97569717 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 92
97569538 TCTTGTAGCT
* * * *
97569548 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCTAGGCCGATGCATGTCCCAAACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATATAGGCCAATACATGTCCCAAACATG
97569613 TCTTACACTAGCTCTCGTCACAATGCC
66 TCTTACACTAGCTCTCGTCACAATGCC
*
97569640 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATA-ATATGGCCAATACATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATATATA-GGCCAATACATGTCCCAAA
*
97569703 CATGTCTTATACTAG
62 CATGTCTTACACTAG
97569718 AATACAAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 4 0.06
93 16 0.24
94 47 0.69
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATATAGGCCAATACATGTCCCAAACATG
TCTTACACTAGCTCTCGTCACAATGCC
Found at i:97572667 original size:26 final size:26
Alignment explanation
Indices: 97572638--97572779 Score: 126
Period size: 27 Copynumber: 5.3 Consensus size: 26
97572628 TCAAATGGTA
*
97572638 GTAATTTTACAATCGACGGTATTTCG
1 GTAATTTTACAATCGAGGGTATTTCG
* *
97572664 GTAATTTTATAAACCG-GGGTACTTT-G
1 GTAATTTTA-CAATCGAGGGTA-TTTCG
* *
97572690 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAGGGTATTTCG
* * **
97572717 GTAATTTTACAAATTGAGGGCATTTTA
1 GTAATTTTAC-AATCGAGGGTATTTCG
* *
97572744 GTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATC-GAGGGTATTTCG
97572771 GTAATTTTA
1 GTAATTTTA
97572780 GTAAACTAAA
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
25 2 0.02
26 30 0.33
27 58 0.63
28 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAATCGAGGGTATTTCG
Found at i:97572766 original size:54 final size:51
Alignment explanation
Indices: 97572636--97572779 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 51
97572626 CATCAAATGG
* * *
97572636 TAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGTACTT
1 TAGTAATTTTACAATC-AAGGTATTTCGGTAATTTTACAAACCGGGGCACTT
* * ** *
97572688 TGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATTGAGGGCATTT
1 TAGTAATTTTACAA-TC-AAGGTATTTCGGTAATTTTACAAACCG-GGGCACTT
*
97572742 TAGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 TAGTAATTTTACAATC-AA-GGTATTTCGGTAATTTTA
97572780 GTAAACTAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 13 0.17
53 28 0.36
54 36 0.47
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (51 bp):
TAGTAATTTTACAATCAAGGTATTTCGGTAATTTTACAAACCGGGGCACTT
Found at i:97575080 original size:31 final size:31
Alignment explanation
Indices: 97575041--97575118 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
97575031 TTAACGGGTG
97575041 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
*
97575072 TTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
*
97575103 CTAGGCCGAAG-CTTTT
1 CTGGGCCGAAGCCTTTT
97575119 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 5 0.11
31 39 0.89
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (31 bp):
CTGGGCCGAAGCCTTTTCATAAATCATATCA
Found at i:97575189 original size:42 final size:42
Alignment explanation
Indices: 97575142--97575233 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
97575132 TGGCCCATAG
* * ** *
97575142 GCCCATTTCAATATCATATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
97575184 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
97575226 GCCCATTT
1 GCCCATTT
97575234 GGAGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:97575409 original size:25 final size:25
Alignment explanation
Indices: 97575381--97575450 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
97575371 CTCTTTTAAT
*
97575381 AACTGGGGTAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
97575406 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
97575431 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
97575451 TGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:97576551 original size:27 final size:27
Alignment explanation
Indices: 97576357--97576554 Score: 114
Period size: 27 Copynumber: 7.3 Consensus size: 27
97576347 TTTCATCCTA
* * * * * *
97576357 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTTGTAATTTTATAAAT
* * *
97576384 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTATAAAT
* * * * *
97576411 CAATGGCATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTTTGTAA-TTTTATAAA-T
* * *
97576440 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTTTGTAATTTTATAAAT
* *
97576467 -AAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTTGTAATTTTATAAAT
* * *
97576492 CTAGGGGTATTTTGGTAATTTT-TCTAAT
1 C-AAGGGTATTTTTGTAATTTTAT-AAAT
**
97576520 TGAGGGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTTTGTAATTTTATAAAT
*
97576547 CGAGGGTA
1 CAAGGGTA
97576555 AAACGATAAT
Statistics
Matches: 132, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
26 20 0.15
27 82 0.62
28 15 0.11
29 15 0.11
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTTGTAATTTTATAAAT
Found at i:97576564 original size:27 final size:27
Alignment explanation
Indices: 97576533--97576879 Score: 408
Period size: 27 Copynumber: 12.9 Consensus size: 27
97576523 GGGTATTTTT
* *
97576533 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
97576560 ATAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
97576587 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
97576614 GTAATTCTAG-GAATTGAGGGTAAAATG
1 GTAATTCT-GTAAATCGAGGGTAAAACG
**
97576641 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
97576668 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
97576695 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
97576722 GTAATTTTGTAAATCAAGGGAAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
97576749 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
97576776 GTAATTTTGTAAATCGAGGGTAAGATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
97576803 GTAATTCTGTAAATTGAGGGAAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
97576830 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
97576857 GTAATTTTGTAAATCAAGGGTAA
1 GTAATTCTGTAAATCGAGGGTAA
97576880 TTTGGTAATT
Statistics
Matches: 278, Mismatches: 40, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 277 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:97576591 original size:81 final size:81
Alignment explanation
Indices: 97576533--97576889 Score: 453
Period size: 81 Copynumber: 4.4 Consensus size: 81
97576523 GGGTATTTTT
* * * *
97576533 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGAAAAACAGTAATTCTATA
*
97576598 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
** * * * *
97576614 GTAATTCTAGGAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGAAAAACAGTAATTCTATA
97576679 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
97576695 GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGAAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGAAAAACAGTAATTCTATA
*
97576760 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAATG
* * * ** * * *
97576776 GTAATTTTGTAAATCGAGGGTAAGATGGTAATTCTGTAAATTGAGGGAAAAACGGTAATTTTGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGAAAAACAGTAATTCTATA
* *
97576841 AATCAAGGGTAAAACG
66 AATCGAGGGTAAAATG
* * * **
97576857 GTAATTTTGTAAATCAAGGGTAATTTGGTAATT
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATT
97576890 TTACAAGTCG
Statistics
Matches: 246, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 246 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGAAAAACAGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:97576905 original size:27 final size:26
Alignment explanation
Indices: 97576884--97576973 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 26
97576874 GGGTAATTTG
*
97576884 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCG-AGGTATTTCA
*
97576911 GTAATTTTACAAATCGAGGGCATTTCA
1 GTAATTTTACAAATCGA-GGTATTTCA
* *
97576938 GTAATTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATC-GA-GGTATTTCA
97576965 GTAATTTTA
1 GTAATTTTA
97576974 GTAAACTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.04
27 54 0.96
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGTATTTCA
Found at i:97576915 original size:54 final size:54
Alignment explanation
Indices: 97576857--97576978 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 54
97576847 GGGTAAAACG
* *
97576857 GTAATTTTGTAAATCAAGGGTAATTT-GGTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTGTAAATCAAGGG-AATTTCAGTAATTTTACAA-ACGAAGGGTATTTCA
** * * * *
97576911 GTAATTTTACAAATCGAGGGCATTTCAGTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTGTAAATCAAGGGAATTTCAGTAATTTTACAAACGAAGGGTATTTCA
97576965 GTAATTTTAGTAAA
1 GTAATTTT-GTAAA
97576979 CTAAAGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.13
54 45 0.82
55 3 0.05
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGAATTTCAGTAATTTTACAAACGAAGGGTATTTCA
Found at i:97576925 original size:81 final size:81
Alignment explanation
Indices: 97576533--97576930 Score: 365
Period size: 81 Copynumber: 4.9 Consensus size: 81
97576523 GGGTATTTTT
* * * * * * *
97576533 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-AAGGGTAAAACAGTAATTCTAT
1 GTAATTTTGTAAATCAAGGGTAAGATGGTAATTCTGTAAATCGAA-GGAAAAACAGTAATTTTAT
**
97576597 AAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAACG
* * ** * * * * *
97576614 GTAATTCTAG-GAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
1 GTAATT-TTGTAAATCAAGGGTAAGATGGTAATTCTGTAAATCGAAGGAAAAACAGTAATTTTAT
*
97576678 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* * * * * * *
97576695 GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATC-AAGGGAAAAACGGTAATTCTAT
1 GTAATTTTGTAAATCAAGGGTAAGATGGTAATTCTGTAAATCGAA-GGAAAAACAGTAATTTTAT
97576759 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * * *
97576776 GTAATTTTGTAAATCGAGGGTAAGATGGTAATTCTGTAAATTGAGGGAAAAACGGTAATTTTGTA
1 GTAATTTTGTAAATCAAGGGTAAGATGGTAATTCTGTAAATCGAAGGAAAAACAGTAATTTTATA
*
97576841 AATCAAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * ***
97576857 GTAATTTTGTAAATCAAGGGTAATTTGGTAATT-T-TACAAGTCGAAGGTATTTCAGTAATTTTA
1 GTAATTTTGTAAATCAAGGGTAAGATGGTAATTCTGTA-AA-TCGAAGGAAAAACAGTAATTTTA
*
97576920 CAAATCGAGGG
64 TAAATCGAGGG
97576931 CATTTCAGTA
Statistics
Matches: 268, Mismatches: 42, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.01
80 4 0.01
81 259 0.97
82 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAAGATGGTAATTCTGTAAATCGAAGGAAAAACAGTAATTTTATA
AATCGAGGGTAAAACG
Found at i:97576987 original size:27 final size:27
Alignment explanation
Indices: 97576884--97576988 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
97576874 GGGTAATTTG
* *
97576884 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
97576911 GTAATTTTACAAA-TCGAGGGCATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* *
97576938 GTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
97576965 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
97576989 CTAAACAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:97582769 original size:25 final size:25
Alignment explanation
Indices: 97582741--97582825 Score: 95
Period size: 22 Copynumber: 3.4 Consensus size: 25
97582731 AGACCAGATA
97582741 AGCTTCCCGTTACATGGCTCACATG
1 AGCTTCCCGTTACATGGCTCACATG
97582766 AGCTTCCCGTTAC---GCTCACATG
1 AGCTTCCCGTTACATGGCTCACATG
* * * *
97582788 AGCTTTCCGTTATATGGCTCGAGAGAG
1 AGCTTCCCGTTACATGGCTC-ACA-TG
97582815 AGCTTCCCGTT
1 AGCTTCCCGTT
97582826 TATGTGCTCG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
22 20 0.40
25 17 0.34
26 2 0.04
27 11 0.22
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTTCCCGTTACATGGCTCACATG
Found at i:97582785 original size:22 final size:23
Alignment explanation
Indices: 97582713--97582799 Score: 88
Period size: 25 Copynumber: 3.7 Consensus size: 23
97582703 TATGGCTCTT
*
97582713 ATGAGCTTCCCGTTATACAGAC-CAG
1 ATGAGCTTCCCG-T-TACAG-CTCAC
*
97582738 ATAAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGTTACA--GCTCAC
97582763 ATGAGCTTCCCGTTAC-GCTCAC
1 ATGAGCTTCCCGTTACAGCTCAC
*
97582785 ATGAGCTTTCCGTTA
1 ATGAGCTTCCCGTTA
97582800 TATGGCTCGA
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
22 20 0.36
23 4 0.07
24 2 0.04
25 29 0.53
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (23 bp):
ATGAGCTTCCCGTTACAGCTCAC
Found at i:97588823 original size:2 final size:2
Alignment explanation
Indices: 97588816--97588849 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97588806 TGTATACATG
97588816 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97588850 GTACAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97590936 original size:37 final size:37
Alignment explanation
Indices: 97590882--97590955 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
97590872 TTTTTTAAAC
* * *
97590882 AATGTTAAAAAACTTGAATCAAAAACTGTAACAAAAA
1 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
97590919 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
1 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
97590956 TTACTTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.64, C:0.08, G:0.07, T:0.22
Consensus pattern (37 bp):
AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
Found at i:97593391 original size:22 final size:22
Alignment explanation
Indices: 97593365--97593436 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
97593355 ATGTTACAAA
97593365 CAAATACAAAACATTTACATAC
1 CAAATACAAAACATTTACATAC
* *
97593387 CAAATA-ATAGTA-ATGTTACA-AA
1 CAAATACA-A-AACAT-TTACATAC
97593409 CAAATACAAAACATTTACATAC
1 CAAATACAAAACATTTACATAC
97593431 CAAATA
1 CAAATA
97593437 ATAGTTCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
21 7 0.17
22 26 0.65
23 7 0.17
ACGTcount: A:0.56, C:0.18, G:0.03, T:0.24
Consensus pattern (22 bp):
CAAATACAAAACATTTACATAC
Found at i:97593410 original size:44 final size:44
Alignment explanation
Indices: 97593348--97593441 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
97593338 CAAACTCAAG
97593348 TAATAG-AATGTTACAAACAAATACAAAACATTTACATACCAAA
1 TAATAGTAATGTTACAAACAAATACAAAACATTTACATACCAAA
97593391 TAATAGTAATGTTACAAACAAATACAAAACATTTACATACCAAA
1 TAATAGTAATGTTACAAACAAATACAAAACATTTACATACCAAA
97593435 TAATAGT
1 TAATAGT
97593442 TCAAAATTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 6 0.12
44 44 0.88
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (44 bp):
TAATAGTAATGTTACAAACAAATACAAAACATTTACATACCAAA
Found at i:97601809 original size:30 final size:30
Alignment explanation
Indices: 97601762--97601821 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97601752 ATTCCCAGCC
97601762 TAGGGGAAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGTAAAAGTT
* * *
97601792 TAGGGGCAAAA-TGGTAATTTTGTCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGTAAAAGTT
97601822 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGTAAAAGTT
Found at i:97602381 original size:27 final size:27
Alignment explanation
Indices: 97602343--97602397 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
97602333 GTTATTTGAT
*
97602343 GTAAGTTATGAATTTAAATTGATTACG
1 GTAAGTTATGAATTTAAATTGATCACG
97602370 GTAAGTTATGAATTTAAATTGATCACG
1 GTAAGTTATGAATTTAAATTGATCACG
97602397 G
1 G
97602398 ACAATTTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAAGTTATGAATTTAAATTGATCACG
Found at i:97602654 original size:100 final size:101
Alignment explanation
Indices: 97602472--97602668 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 101
97602462 CAAATGAACT
*
97602472 ATTGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATG
1 ATTGTGA-GTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATG
97602537 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAA
65 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAA
* *
97602574 ATTGTGA-TCACGTGTATAGTATTAAGTGCAGGCTACTACGTGTACC-AGATTATTGGTCGCATG
1 ATTGTGAGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATTGGTCGCATG
97602637 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
65 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
97602669 AGATAGCTTC
Statistics
Matches: 91, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
99 1 0.01
100 83 0.91
102 7 0.08
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (101 bp):
ATTGTGAGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGT
GTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAA
Found at i:97602670 original size:49 final size:49
Alignment explanation
Indices: 97602486--97602673 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
97602476 TGAGGTCACG
*
97602486 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAATTGGTCGCA
* * * *
97602535 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAATTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAATTG-G-TCGCA
* * * *
97602586 TGTATAGTATTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
97602635 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
97602674 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 73 0.63
50 7 0.06
51 36 0.31
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:97606581 original size:14 final size:14
Alignment explanation
Indices: 97606562--97606589 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97606552 AAGCTCAGTG
97606562 TGAGTTTTAAGCAT
1 TGAGTTTTAAGCAT
97606576 TGAGTTTTAAGCAT
1 TGAGTTTTAAGCAT
97606590 ACTTAACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TGAGTTTTAAGCAT
Found at i:97608815 original size:6 final size:6
Alignment explanation
Indices: 97608804--97608979 Score: 300
Period size: 6 Copynumber: 29.3 Consensus size: 6
97608794 ACCAACACTT
* * *
97608804 ATATAC ATATAC ATATAC ATATAC ATATAT ATATAC ATGTAC ATGTAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
97608852 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
97608900 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
*
97608948 ATATAC ATATAC ATATAC ACATAAC ATA-AC AT
1 ATATAC ATATAC ATATAC ATAT-AC ATATAC AT
97608980 TCAAAATGCA
Statistics
Matches: 163, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
5 4 0.02
6 155 0.95
7 4 0.02
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.33
Consensus pattern (6 bp):
ATATAC
Found at i:97612049 original size:46 final size:46
Alignment explanation
Indices: 97611987--97612151 Score: 267
Period size: 46 Copynumber: 3.6 Consensus size: 46
97611977 GAGGCCAATA
* *
97611987 CATGTCCCAGATATATCTTACACTGGCTTTCATAATGTGGCCGATG
1 CATGTCCCAGACATATCTTACACTGGCTCTCATAATGTGGCCGATG
* *
97612033 TATGTCCCAGACATATCTTACACTTGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATATCTTACACTGGCTCTCATAATGTGGCCGATG
* *
97612079 CATGTCCCAAACATATCTTACACTGGCTCTCATAATGTGGCTGATG
1 CATGTCCCAGACATATCTTACACTGGCTCTCATAATGTGGCCGATG
*
97612125 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATATCTTACACTGGC
97612152 ACACATGCCA
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 109 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATATCTTACACTGGCTCTCATAATGTGGCCGATG
Found at i:97613514 original size:18 final size:19
Alignment explanation
Indices: 97613474--97613521 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 19
97613464 GTTCCCAACT
97613474 CATTTCACAATTTCATATTC
1 CATTTCAC-ATTTCATATTC
*
97613494 CATTTCACATTTCA-CTTC
1 CATTTCACATTTCATATTC
97613512 CATTTCACAT
1 CATTTCACAT
97613522 CATTTCCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 13 0.48
19 6 0.22
20 8 0.30
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (19 bp):
CATTTCACATTTCATATTC
Found at i:97631528 original size:2 final size:2
Alignment explanation
Indices: 97631516--97631551 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
97631506 ACTTCATAGG
97631516 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97631552 GCATGCGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97631744 original size:3 final size:3
Alignment explanation
Indices: 97631736--97631779 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
97631726 TTGTGATGCT
97631736 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97631780 GTTTGTTCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97636292 original size:21 final size:21
Alignment explanation
Indices: 97636266--97636306 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97636256 AGACGAGCGA
* *
97636266 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
97636287 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
97636307 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:97641755 original size:40 final size:40
Alignment explanation
Indices: 97641700--97641908 Score: 190
Period size: 41 Copynumber: 5.1 Consensus size: 40
97641690 GCAAAAATTG
* * * *
97641700 TAAAACACATAGCAATAGCGGCATTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCCTTTTAGCAAAAACGCCGC
* *
97641741 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCCTTTTAG-CAAAAACGCCGC
* * * *
97641782 AAAAAACAGAGCATTAGAGGCGCTTTTTGC-AAAACGCCGC
1 TAAAAACAGAGCAATAGCGGC-CTTTTAGCAAAAACGCCGC
* *
97641822 TAAAAACCAGAGCATTAGCGGCCCTTTT-GGAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGG-CCTTTTAGCAAAAACGCCGC
* * **
97641863 TAAAAACCAGAACACTAGCGGCGCTTTT-GGTAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGC-CTTTTAGCAAAAACGCCGC
97641904 TAAAA
1 TAAAA
97641909 GTCATATAAC
Statistics
Matches: 145, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
40 37 0.26
41 102 0.70
42 6 0.04
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCCTTTTAGCAAAAACGCCGC
Found at i:97641825 original size:81 final size:82
Alignment explanation
Indices: 97641731--97641908 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 82
97641721 CATTTTACCA
* * *
97641731 AAAACGCCACTAAAAA-CAGAGCAATAGCGG-CGTTTTAGTAAAAAACGCCGC-AAAAAACAGAG
1 AAAACGCCGCTAAAAACCAGAGCAATAGCGGCCCTTTT-G-AAAAAACGCCGCTAAAAAACAGAA
* *
97641793 CATTAGAGGCGCTTTTTGC
64 CACTAGAGGCGCTTTTGGC
* * *
97641812 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCCCTTTTGGAAAAACGCCGCTAAAAACCAGAACA
1 AAAACGCCGCTAAAAACCAGAGCAATAGCGGCCCTTTTGAAAAAACGCCGCTAAAAAACAGAACA
* *
97641877 CTAGCGGCGCTTTTGGT
66 CTAGAGGCGCTTTTGGC
97641894 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
97641909 GTCATATAAC
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
81 26 0.31
82 53 0.63
83 5 0.06
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (82 bp):
AAAACGCCGCTAAAAACCAGAGCAATAGCGGCCCTTTTGAAAAAACGCCGCTAAAAAACAGAACA
CTAGAGGCGCTTTTGGC
Found at i:97642096 original size:21 final size:21
Alignment explanation
Indices: 97642072--97642153 Score: 76
Period size: 21 Copynumber: 3.8 Consensus size: 21
97642062 CATTATAGTT
*
97642072 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
*
97642093 TATGGTTTAGGGTTTAAGGT-
1 TATGGTTTAGGGTTTAAGATA
**
97642113 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
*
97642138 TATTGTTTAGGGTTTA
1 TATGGTTTAGGGTTTA
97642154 GGGTTTAAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.08
21 28 0.58
24 13 0.27
25 3 0.06
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:97642234 original size:7 final size:7
Alignment explanation
Indices: 97642222--97642326 Score: 63
Period size: 7 Copynumber: 14.7 Consensus size: 7
97642212 GGGATTATAA
97642222 TTTAGGG
1 TTTAGGG
97642229 TTTAGGG
1 TTTAGGG
*
97642236 GTTAGGG
1 TTTAGGG
97642243 -TT-GGAG
1 TTTAGG-G
*
97642249 TTTAAGG
1 TTTAGGG
*
97642256 TGTAAGGG
1 T-TTAGGG
*
97642264 TTTGGGG
1 TTTAGGG
*
97642271 TTAAGGG
1 TTTAGGG
*
97642278 TTTAGAG
1 TTTAGGG
*
97642285 TTTAGTG
1 TTTAGGG
97642292 TTTATGGG
1 TTTA-GGG
*
97642300 -ATATGGG
1 TTTA-GGG
*
97642307 TTAAGAGG
1 TTTAG-GG
97642315 TTTAGGG
1 TTTAGGG
97642322 TTTAG
1 TTTAG
97642327 ATTAATTAGT
Statistics
Matches: 75, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 3 0.04
7 55 0.73
8 15 0.20
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:97643635 original size:15 final size:15
Alignment explanation
Indices: 97643612--97643642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97643602 TTGAAGGTAA
*
97643612 CCTATTGGTTTTCTT
1 CCTACTGGTTTTCTT
97643627 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
97643642 C
1 C
97643643 TAATTCAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.26, G:0.13, T:0.55
Consensus pattern (15 bp):
CCTACTGGTTTTCTT
Found at i:97644903 original size:23 final size:23
Alignment explanation
Indices: 97644858--97644903 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97644848 GAAATTGAGA
*
97644858 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
*
97644881 TGTTAATTGATATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
97644904 GTGTGTGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:97644908 original size:2 final size:2
Alignment explanation
Indices: 97644901--97644941 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
97644891 TATGTTAATA
97644901 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
97644942 CCCTTCTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:97645329 original size:23 final size:23
Alignment explanation
Indices: 97645303--97645748 Score: 369
Period size: 23 Copynumber: 19.4 Consensus size: 23
97645293 AAATGTTGTT
97645303 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTAAAGTGCTGCA
*
97645326 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
97645349 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
97645372 AATTGAAGTGTTAGAGTGCTATA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
97645395 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
97645418 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGCA
* **
97645441 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGCA
*
97645464 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
97645487 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
97645510 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
97645533 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGCA
* **
97645556 AATTGAAATGTTAAAGTGCCACA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
97645579 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
97645602 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
* ** **
97645625 AATTGAAGTACTATAAA-TATTGTT
1 AATTGAAGT-GT-TAAAGTGCTGCA
*
97645649 AATTGAAATGTT-AAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
97645671 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
97645694 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
97645717 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
97645740 AATTGAAGT
1 AATTGAAGT
97645749 TGTGGATTAT
Statistics
Matches: 338, Mismatches: 64, Indels: 42
0.76 0.14 0.09
Matches are distributed among these distances:
21 2 0.01
22 40 0.12
23 250 0.74
24 45 0.13
25 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:97645468 original size:92 final size:90
Alignment explanation
Indices: 97645319--97645746 Score: 475
Period size: 92 Copynumber: 4.7 Consensus size: 90
97645309 GATGTTAAAG
* * * * * ** *
97645319 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAACTG-TTAAAGTGCTGCAAATTGAAGTGT
1 TGCTGTAAATTGAAGTGTTT-AGTGCTGCAAATTGAAGTGTTTAAA-TGTTGTTAATTGAAATGT
* * *
97645383 TAGAGTGCTATAAATTGGAGTGTTTAA
64 TAAAGTGCTACAAATTGAAGTGTTTAA
* * *
97645410 GTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTTAAATGTTGTTAATTGAAATG
1 -TGCTGTAAATTGAAGTGTTTAG-TGCTGCAAATTGAAG-TGTTTAAATGTTGTTAATTGAAATG
*
97645474 TTAAAGTGCTGCAAATTGAAGTGTTTTAA
63 TTAAAGTGCTACAAATTGAAGTG-TTTAA
*
97645503 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTT
1 TGCTGTAAATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTT
*
97645568 AAAGTGCCACAAATTGAAGTGTTTGAA
65 AAAGTGCTACAAATTGAAGTGTTT-AA
* * * * * *
97645595 TGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTACTATAAATATTGTTAATTGAAATGT
1 TGCTGTAAATTGAAGTG-TTTAGTGCTGCAAATTGAAGT-GTTTAAATGTTGTTAATTGAAATGT
*
97645660 T-AAGTGCTGCAAATTGAAGTGTTTTAA
64 TAAAGTGCTACAAATTGAAGTG-TTTAA
* * * *
97645687 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAA
1 TGCTGTAAATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAA
97645747 GTTGTGGATT
Statistics
Matches: 292, Mismatches: 33, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
91 22 0.08
92 228 0.78
93 42 0.14
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (90 bp):
TGCTGTAAATTGAAGTGTTTAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTTA
AAGTGCTACAAATTGAAGTGTTTAA
Found at i:97645652 original size:24 final size:23
Alignment explanation
Indices: 97645601--97645655 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
97645591 TGAATGCTGT
* *
97645601 AAATTGAAGTGCTTAAATGTTGC
1 AAATTGAAGTACTTAAATATTGC
*
97645624 AAATTGAAGTACTATAAATATTGT
1 AAATTGAAGTACT-TAAATATTGC
*
97645648 TAATTGAA
1 AAATTGAA
97645656 ATGTTAAGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.36
Consensus pattern (23 bp):
AAATTGAAGTACTTAAATATTGC
Found at i:97647666 original size:19 final size:19
Alignment explanation
Indices: 97647643--97647689 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
97647633 ATTTAATCTA
*
97647643 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
97647661 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
97647681 ATTTTTATT
1 ATTTTTATT
97647690 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:97648020 original size:12 final size:12
Alignment explanation
Indices: 97648005--97648029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97647995 TTTCAACATT
97648005 ACTATGATTATG
1 ACTATGATTATG
97648017 ACTATGATTATG
1 ACTATGATTATG
97648029 A
1 A
97648030 GTAAATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ACTATGATTATG
Found at i:97651072 original size:21 final size:20
Alignment explanation
Indices: 97651026--97651089 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
97651016 TTATTTTTAA
* *
97651026 TCTATTTTTATTCTTTCATAT
1 TCTATTTTT-TTCTTTCTTTT
97651047 T-TATTTTTTTCCTTTCTTTT
1 TCTATTTTTTT-CTTTCTTTT
97651067 TCTATTTTTTTCTTTCCTTTT
1 TCTATTTTTTTCTTT-CTTTT
97651088 TC
1 TC
97651090 ATCTTCTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 2 0.05
20 19 0.50
21 17 0.45
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTATTTTTTTCTTTCTTTT
Found at i:97651344 original size:27 final size:27
Alignment explanation
Indices: 97651310--97651361 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
97651300 AGGTTACAAA
97651310 AAAAGAAAA-ATAAG-GAGAACGAGAGAG
1 AAAAGAAAAGA-AAGAGAGAA-GAGAGAG
97651337 AAAAGAAAAGAAAGAGAGAAGAGAG
1 AAAAGAAAAGAAAGAGAGAAGAGAG
97651362 TTTTGGTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (27 bp):
AAAAGAAAAGAAAGAGAGAAGAGAGAG
Found at i:97653695 original size:137 final size:137
Alignment explanation
Indices: 97653460--97653735 Score: 543
Period size: 137 Copynumber: 2.0 Consensus size: 137
97653450 AGCCTATTCA
97653460 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
97653525 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
97653590 CCATTTG
131 CCATTTG
97653597 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
*
97653662 CAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
97653727 CCATTTG
131 CCATTTG
97653734 GG
1 GG
97653736 GAGACTACTC
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 138 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (137 bp):
GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
CCATTTG
Found at i:97654012 original size:26 final size:26
Alignment explanation
Indices: 97653983--97654035 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
97653973 TCAAACATGC
97653983 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
97654009 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
97654035 A
1 A
97654036 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:97655556 original size:26 final size:26
Alignment explanation
Indices: 97655520--97655603 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
97655510 CATGAAATTC
97655520 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97655546 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97655572 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97655598 TTATCA
1 TTATCA
97655604 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97663506 original size:42 final size:42
Alignment explanation
Indices: 97663449--97663536 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
97663439 CAACAATCTT
97663449 TTTTCAAAAATACTGGCACATAGTAGGAACTGAGGTAATGTC
1 TTTTCAAAAATACTGGCACATAGTAGGAACTGAGGTAATGTC
*
97663491 TTTTCAAAACTACTGGCACATAGTAGGAACTGAGGTAATGTC
1 TTTTCAAAAATACTGGCACATAGTAGGAACTGAGGTAATGTC
97663533 TTTT
1 TTTT
97663537 TGCTTGGAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (42 bp):
TTTTCAAAAATACTGGCACATAGTAGGAACTGAGGTAATGTC
Found at i:97666747 original size:23 final size:23
Alignment explanation
Indices: 97666700--97666747 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
97666690 CCTAGTATAA
*
97666700 AAATATGAATATTTTAATTATAT
1 AAATATGAATATTTTAATTAAAT
* **
97666723 AAATATGAGTATTTTGTTTAAAT
1 AAATATGAATATTTTAATTAAAT
97666746 AA
1 AA
97666748 CGCTTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (23 bp):
AAATATGAATATTTTAATTAAAT
Found at i:97669365 original size:15 final size:14
Alignment explanation
Indices: 97669345--97669382 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
97669335 AGCATGTCAA
97669345 ATCTGTTATTTATGT
1 ATCTGTT-TTTATGT
*
97669360 ATCTG-TTTTCTGT
1 ATCTGTTTTTATGT
97669373 ATCTGTTTTT
1 ATCTGTTTTT
97669383 GGGGTGGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 11 0.52
14 5 0.24
15 5 0.24
ACGTcount: A:0.13, C:0.11, G:0.13, T:0.63
Consensus pattern (14 bp):
ATCTGTTTTTATGT
Done.