Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 34 of 444
Found at i:8317815 original size:57 final size:57
Alignment explanation
Indices: 8317747--8317871 Score: 169
Period size: 57 Copynumber: 2.2 Consensus size: 57
8317737 CGGCGGTTGA
* * **
8317747 GGCTGTTGCTGCGGTTGAGGTTGTCGCTGCAGTGGAGGCTGTCGAGGCAGCGGTGGC
1 GGCTGTCGCTGCGGTCGAGGTTGTCGCTGCAGTGGAGGCTGTCGAGGCAGCAATGGC
* * * * *
8317804 GGCTGTCGCTGCGGTCGAGGTTGTCGTTGCGGTGGAGGTTGTCGTGGCGGCAATGGC
1 GGCTGTCGCTGCGGTCGAGGTTGTCGCTGCAGTGGAGGCTGTCGAGGCAGCAATGGC
8317861 GGCTGTCGCTG
1 GGCTGTCGCTG
8317872 TAGTAGAAGC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.07, C:0.20, G:0.47, T:0.26
Consensus pattern (57 bp):
GGCTGTCGCTGCGGTCGAGGTTGTCGCTGCAGTGGAGGCTGTCGAGGCAGCAATGGC
Found at i:8317848 original size:18 final size:18
Alignment explanation
Indices: 8317796--8317853 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
8317786 TGTCGAGGCA
* * *
8317796 GCGGTGGCGGCTGTCGCT
1 GCGGTGGAGGTTGTCGTT
*
8317814 GCGGTCGAGGTTGTCGTT
1 GCGGTGGAGGTTGTCGTT
*
8317832 GCGGTGGAGGTTGTCGTG
1 GCGGTGGAGGTTGTCGTT
8317850 GCGG
1 GCGG
8317854 CAATGGCGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.03, C:0.19, G:0.52, T:0.26
Consensus pattern (18 bp):
GCGGTGGAGGTTGTCGTT
Found at i:8321836 original size:4 final size:4
Alignment explanation
Indices: 8321827--8321858 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
8321817 GATAATAATA
8321827 AAAT AAAT AAAT AAAT AAAT AAAT AAACT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAA
8321859 GTTTTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:8321839 original size:16 final size:16
Alignment explanation
Indices: 8321805--8321853 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
8321795 ATGATGATTT
8321805 TAATAATAATAAGAT-AA
1 TAATAA-AATAA-ATAAA
8321822 TAATAAAATAAATAAA
1 TAATAAAATAAATAAA
8321838 TAA-ATAAATAAATAAA
1 TAATA-AAATAAATAAA
8321854 CTAAAGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.10
16 21 0.70
17 6 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
TAATAAAATAAATAAA
Found at i:8322375 original size:26 final size:26
Alignment explanation
Indices: 8322339--8322448 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
8322329 TGATACAAAT
8322339 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
8322365 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
8322391 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
8322417 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
8322443 TGATAA
1 TGATAA
8322449 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:8323960 original size:26 final size:26
Alignment explanation
Indices: 8323931--8323983 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8323921 TTTACAATTT
8323931 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
8323957 TACCCTTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
8323983 T
1 T
8323984 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:8324476 original size:137 final size:136
Alignment explanation
Indices: 8324231--8324516 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
8324221 GAGTAGTCTC
* *
8324231 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATACT
8324296 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACCA
8324361 CTGTTA
131 CTGTTA
8324367 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
*
8324432 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
8324497 ACTGTTA
130 ACTGTTA
**
8324504 CCTGAATGGGCTT
1 CCCAAATGGGCTT
8324517 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 20 0.14
137 124 0.86
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:8328220 original size:18 final size:18
Alignment explanation
Indices: 8328186--8328223 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8328176 AGGCCAATTT
8328186 GGGCTGTGTGAGCCACAC
1 GGGCTGTGTGAGCCACAC
*
8328204 GGGC-GTGTGGGCTCACAC
1 GGGCTGTGTGAGC-CACAC
8328222 GG
1 GG
8328224 ATAGGCCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.13, C:0.26, G:0.45, T:0.16
Consensus pattern (18 bp):
GGGCTGTGTGAGCCACAC
Found at i:8337808 original size:51 final size:51
Alignment explanation
Indices: 8337749--8337856 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
8337739 CAATCTTGGA
* *
8337749 ATCCAAATAAATTACAATTGTTTGTAAATTTATCCATCTCTTGGAGCTGGG
1 ATCCAAATAAATTACAACTGTTTGTAAATTTATCCATCTCTTGGAGCCGGG
* *
8337800 ATCCAAATAAATTGCAACTGTTTGTAAATTTATCCCTCTCTTGGAGCCGGG
1 ATCCAAATAAATTACAACTGTTTGTAAATTTATCCATCTCTTGGAGCCGGG
8337851 ATCCAA
1 ATCCAA
8337857 TTTCCCTTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (51 bp):
ATCCAAATAAATTACAACTGTTTGTAAATTTATCCATCTCTTGGAGCCGGG
Found at i:8339557 original size:16 final size:16
Alignment explanation
Indices: 8339532--8339562 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8339522 CACCACTTGG
*
8339532 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
8339548 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
8339563 TCATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:8342895 original size:31 final size:30
Alignment explanation
Indices: 8342842--8342902 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
8342832 CAACACTTGT
*
8342842 TTTTTTATTGGAACTTAGAAAGTACTACTTA
1 TTTTTTATTGGAAC-TAGAAAGTAATACTTA
8342873 TTTTTTATTGGAA-TAGAAAAAGTAATACTT
1 TTTTTTATTGGAACTAG--AAAGTAATACTT
8342903 TACATTACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
31 24 0.89
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (30 bp):
TTTTTTATTGGAACTAGAAAGTAATACTTA
Found at i:8343327 original size:11 final size:12
Alignment explanation
Indices: 8343304--8343346 Score: 52
Period size: 11 Copynumber: 3.4 Consensus size: 12
8343294 AACAATATAT
8343304 TTTTCTCTTTTTC
1 TTTTCT-TTTTTC
8343317 TTTT-TTTTTTC
1 TTTTCTTTTTTC
8343328 TTTTCCTTTTCTTC
1 TTTT-CTTTT-TTC
8343342 TTTTC
1 TTTTC
8343347 CATTAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.37
12 1 0.04
13 9 0.33
14 7 0.26
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:8343329 original size:17 final size:17
Alignment explanation
Indices: 8343303--8343337 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8343293 GAACAATATA
*
8343303 TTTTTCTCTTTTTCTTT
1 TTTTTCTCTTTTCCTTT
*
8343320 TTTTTTTCTTTTCCTTT
1 TTTTTCTCTTTTCCTTT
8343337 T
1 T
8343338 CTTCTTTTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTCTTTTCCTTT
Found at i:8346572 original size:3 final size:3
Alignment explanation
Indices: 8346564--8346631 Score: 84
Period size: 3 Copynumber: 22.0 Consensus size: 3
8346554 TACTGTTACC
* *
8346564 ATT ATT ATT TTT AATT AATT AATT AAT -TT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT -ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
8346611 ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
8346632 GTCCTTAATG
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 1 0.02
3 48 0.81
4 10 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8346874 original size:22 final size:23
Alignment explanation
Indices: 8346832--8346884 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
8346822 TTTCTTTCAT
8346832 ATTATTATGTATATATGTTTTAAC
1 ATTATTATGTATATA-GTTTTAAC
*
8346856 ATTATTGTGTATATA-TTTTAAC
1 ATTATTATGTATATAGTTTTAAC
8346878 ATTATTA
1 ATTATTA
8346885 ATATTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 13 0.48
24 14 0.52
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.55
Consensus pattern (23 bp):
ATTATTATGTATATAGTTTTAAC
Found at i:8351025 original size:8 final size:8
Alignment explanation
Indices: 8351000--8351051 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
8350990 TAATGATGTG
*
8351000 AATAATAA
1 AATATTAA
8351008 AATATATAA
1 AATAT-TAA
8351017 AATATT-A
1 AATATTAA
*
8351024 AATATCAA
1 AATATTAA
*
8351032 AATATCAA
1 AATATTAA
*
8351040 AATATTAG
1 AATATTAA
8351048 AATA
1 AATA
8351052 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 6 0.16
8 24 0.63
9 8 0.21
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:8351027 original size:24 final size:24
Alignment explanation
Indices: 8350999--8351055 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
8350989 ATAATGATGT
*
8350999 GAATAATAAAATATATAAAATATTA
1 GAATAATAAAATAT-CAAAATATTA
8351024 -AAT-ATCAAAATATCAAAATATTA
1 GAATAAT-AAAATATCAAAATATTA
8351047 GAATAATAA
1 GAATAATAA
8351056 TAATTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 11 0.39
24 15 0.54
25 2 0.07
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATCAAAATATTA
Found at i:8351110 original size:2 final size:2
Alignment explanation
Indices: 8351105--8351134 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8351095 AATGTACGTA
8351105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8351135 TAGAAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8351288 original size:22 final size:24
Alignment explanation
Indices: 8351225--8351289 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
8351215 CGTGATAATA
*
8351225 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
8351250 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
8351273 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
8351290 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:8351309 original size:2 final size:2
Alignment explanation
Indices: 8351302--8351380 Score: 51
Period size: 2 Copynumber: 41.5 Consensus size: 2
8351292 TAACATGTAA
*
8351302 AT AT AT AT AT AT AT AT AT AA AT A- AT AT A- AT AT A- AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
8351340 AA AG AT AT AT AC AT A- AA AT AGT AT AA AA AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT A
8351381 CGTAATATAG
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
1 5 0.08
2 54 0.89
3 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (2 bp):
AT
Found at i:8351378 original size:30 final size:30
Alignment explanation
Indices: 8351308--8351390 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 30
8351298 GTAAATATAT
* * *
8351308 ATATATATATATAAATAATATAATATAATA
1 ATATATATATATACATAATATAGTATAAAA
* * * *
8351338 TTAAAGATATATACATAAAATAGTATAAAA
1 ATATATATATATACATAATATAGTATAAAA
*
8351368 ATATATATATATACGTAATATAG
1 ATATATATATATACATAATATAG
8351391 AATTTAAAAT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (30 bp):
ATATATATATATACATAATATAGTATAAAA
Found at i:8351431 original size:20 final size:20
Alignment explanation
Indices: 8351406--8351450 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8351396 AAAATATACC
*
8351406 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
8351426 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
8351446 TAATA
1 TAATA
8351451 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:8351439 original size:23 final size:23
Alignment explanation
Indices: 8351410--8351453 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8351400 TATACCTAAT
8351410 ATATTAAAAGAATAT-ATAATATA
1 ATATTAAAA-AATATAATAATATA
*
8351433 ATATTAAGAAATATAATAATA
1 ATATTAAAAAATATAATAATA
8351454 ACAAAAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATTAAAAAATATAATAATATA
Found at i:8352276 original size:17 final size:17
Alignment explanation
Indices: 8352254--8352298 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
8352244 TTCTCTTCTA
8352254 CTCCCTCCTCTATTTTC
1 CTCCCTCCTCTATTTTC
8352271 CTCCCTCCTCTATTTTC
1 CTCCCTCCTCTATTTTC
*
8352288 CTCCCTTCTCT
1 CTCCCTCCTCT
8352299 TATAATGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.04, C:0.49, G:0.00, T:0.47
Consensus pattern (17 bp):
CTCCCTCCTCTATTTTC
Found at i:8366682 original size:20 final size:20
Alignment explanation
Indices: 8366648--8366692 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8366638 GGCACGACCC
8366648 ATTTTTTTAATAATATAATTT
1 ATTTTTTTAATAATATAA-TT
* *
8366669 ATTTTTTTGA-AATATTATT
1 ATTTTTTTAATAATATAATT
8366688 ATTTT
1 ATTTT
8366693 ATTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 6 0.27
21 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTTTTAATAATATAATT
Found at i:8366682 original size:23 final size:21
Alignment explanation
Indices: 8366648--8366708 Score: 59
Period size: 24 Copynumber: 2.7 Consensus size: 21
8366638 GGCACGACCC
8366648 ATTTTTTTAATAATATAATTT
1 ATTTTTTTAATAATATAATTT
* *
8366669 ATTTTTTTGAAATATTATTATTTT
1 ATTTTTTT--AATAATA-TAATTT
8366693 ATTATATTTTAATAAT
1 ATT-T-TTTTAATAAT
8366709 TTTTAAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 8 0.25
23 6 0.19
24 13 0.41
25 1 0.03
26 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTTTTAATAATATAATTT
Found at i:8367208 original size:250 final size:251
Alignment explanation
Indices: 8366760--8367250 Score: 930
Period size: 250 Copynumber: 2.0 Consensus size: 251
8366750 GCCAGACCCG
*
8366760 GAGGCGCGACCAGTGGCTCCTGCTGCAGAGGCGCGACTCCCCTGCAGCCCGCCACATGTCCCTGC
1 GAGGCGCGACCAGTCGCTCCTGCTGCAGAGGCGCGACTCCCCTGCAGCCCGCCACATGTCCCTGC
*
8366825 CCCCCACCCCCCGGCCCTGCACCCTCCCATGCCACCTGAGAGAAAAGAAAAAAAATTTATTAAGT
66 CCCCCACCCCCCGGCCCTGCACCCTCCCATGCCACCTGAGAGAAAAGAAAAAAAAATTATTAAGT
8366890 TTAATAATTATTTAGGGTTTTTTTACTAAAATAAATTTAAAAAAATTATTTATCAAATAGGTTGT
131 TTAATAATTATTTAGGGTTTTTTTACTAAAATAAATTTAAAAAAATTATTTATCAAATAGGTTGT
8366955 CAGCCCAATTATATGCGAAAATTGAG-TTTTTTTCATTCGCGCCTAGAATACTGCA
196 CAGCCCAATTATATGCGAAAATTGAGTTTTTTTTCATTCGCGCCTAGAATACTGCA
* *
8367010 GAGGCGTGACCAGTCGCTCCTGCTGCAGAGGCGCGACTCCCCTGCAGCCCGCCACGTGTCCCTGC
1 GAGGCGCGACCAGTCGCTCCTGCTGCAGAGGCGCGACTCCCCTGCAGCCCGCCACATGTCCCTGC
8367075 CCCCCACCCCCCGGCCCTGCACCCTCCCATGCCACCTGAGAGAAAAGAAAAAAAAATTATTAAGT
66 CCCCCACCCCCCGGCCCTGCACCCTCCCATGCCACCTGAGAGAAAAGAAAAAAAAATTATTAAGT
8367140 TTAATAATTATTTAGGGTTTTTTTACTAAAATAAATTTAAAAAAATTATTTATCAAATAGGTTGT
131 TTAATAATTATTTAGGGTTTTTTTACTAAAATAAATTTAAAAAAATTATTTATCAAATAGGTTGT
*
8367205 CAGCCCAATTATATGCGAAAATTGGGTTTTTTTTCATTCGCGCCTA
196 CAGCCCAATTATATGCGAAAATTGAGTTTTTTTTCATTCGCGCCTA
8367251 TCTGACAGGC
Statistics
Matches: 235, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
250 216 0.92
251 19 0.08
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (251 bp):
GAGGCGCGACCAGTCGCTCCTGCTGCAGAGGCGCGACTCCCCTGCAGCCCGCCACATGTCCCTGC
CCCCCACCCCCCGGCCCTGCACCCTCCCATGCCACCTGAGAGAAAAGAAAAAAAAATTATTAAGT
TTAATAATTATTTAGGGTTTTTTTACTAAAATAAATTTAAAAAAATTATTTATCAAATAGGTTGT
CAGCCCAATTATATGCGAAAATTGAGTTTTTTTTCATTCGCGCCTAGAATACTGCA
Found at i:8371072 original size:33 final size:32
Alignment explanation
Indices: 8370997--8371080 Score: 105
Period size: 33 Copynumber: 2.6 Consensus size: 32
8370987 TGATGAACTC
* *
8370997 GAGCCGGGTGGAGTAGAGAACGCGCTGGATAT
1 GAGCCGGGAGGAGTAGAGTACGCGCTGGATAT
* * * *
8371029 GGGCCAGGAGGAGTAGAGTACGGTGGTGGATAT
1 GAGCCGGGAGGAGTAGAGTAC-GCGCTGGATAT
8371062 GAGCCGGGAGGAGTAGAGT
1 GAGCCGGGAGGAGTAGAGT
8371081 GCAGATGTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 17 0.40
33 26 0.60
ACGTcount: A:0.25, C:0.12, G:0.48, T:0.15
Consensus pattern (32 bp):
GAGCCGGGAGGAGTAGAGTACGCGCTGGATAT
Found at i:8371250 original size:12 final size:12
Alignment explanation
Indices: 8371195--8371256 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
8371185 CCTGAGTGTA
8371195 GCTCCGGCTCTG
1 GCTCCGGCTCTG
*
8371207 GC-CCCGCTCTG
1 GCTCCGGCTCTG
* *
8371218 GGTCCGGCACTG
1 GCTCCGGCTCTG
*
8371230 CCTCCGGCTCTG
1 GCTCCGGCTCTG
*
8371242 GCTCTGGCTCTG
1 GCTCCGGCTCTG
8371254 GCT
1 GCT
8371257 AGCTCCGGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
11 9 0.22
12 31 0.77
ACGTcount: A:0.02, C:0.42, G:0.32, T:0.24
Consensus pattern (12 bp):
GCTCCGGCTCTG
Found at i:8372886 original size:11 final size:11
Alignment explanation
Indices: 8372872--8372899 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8372862 ACATTATATC
8372872 AAAATTACATT
1 AAAATTACATT
8372883 AAAATTACATT
1 AAAATTACATT
8372894 AAAATT
1 AAAATT
8372900 TCTTACTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATTACATT
Found at i:8373958 original size:3 final size:3
Alignment explanation
Indices: 8373952--8374008 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
8373942 ACTAACATTT
* * * *
8373952 TTC TTC TTTC TCC TCC TTC TCC TTC TTC TTC TTC TTC TTT TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8373998 TTC TTC TTC TT
1 TTC TTC TTC TT
8374009 TTTTCTCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:8378908 original size:18 final size:18
Alignment explanation
Indices: 8378871--8378963 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
8378861 CCCAACTACT
*
8378871 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* * *
8378889 GTATTCGTAAATAGTGCC
1 GTATACGTGAATAGTACC
*
8378907 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
* * *
8378925 ATATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
8378943 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
8378961 GTA
1 GTA
8378964 AACGGTCGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:8378923 original size:36 final size:36
Alignment explanation
Indices: 8378871--8378963 Score: 132
Period size: 36 Copynumber: 2.6 Consensus size: 36
8378861 CCCAACTACT
* *
8378871 GTATACGTGAACAGTACCGTATTCGTAAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
** * *
8378907 GTATACGTGAATAGTACTATATACGTGAATAGTGCT
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
8378943 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
8378964 AACGGTCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
Found at i:8385834 original size:15 final size:16
Alignment explanation
Indices: 8385803--8385836 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
8385793 GAAATAGTTA
8385803 TTAAATATTAAAATAAT
1 TTAAATATT-AAATAAT
8385820 TTAAATATT-AATAAT
1 TTAAATATTAAATAAT
8385835 TT
1 TT
8385837 TATACAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAATATTAAATAAT
Found at i:8386414 original size:2 final size:2
Alignment explanation
Indices: 8386407--8386452 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8386397 ATAAAAGTGC
8386407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8386449 AT AT
1 AT AT
8386453 CAAAATTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8387992 original size:31 final size:33
Alignment explanation
Indices: 8387938--8388001 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 33
8387928 TGTTCTAATG
* * **
8387938 CCTAAATTATTCCTATTGCTTTTT-TA-TTCTA
1 CCTAAAATATCCCTATTAATTTTTATACTTCTA
8387969 CCTAAAATATCCCTATTAATTTTTATACTTCTA
1 CCTAAAATATCCCTATTAATTTTTATACTTCTA
8388002 AAATACCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 20 0.74
32 2 0.07
33 5 0.19
ACGTcount: A:0.28, C:0.20, G:0.02, T:0.50
Consensus pattern (33 bp):
CCTAAAATATCCCTATTAATTTTTATACTTCTA
Found at i:8388145 original size:180 final size:176
Alignment explanation
Indices: 8387840--8388184 Score: 478
Period size: 180 Copynumber: 1.9 Consensus size: 176
8387830 TATATATATA
* *
8387840 TATATTAAATAAAAATAACTACCAATAAATTTTAAAATTTATAAATAAATAAATTAACTTTGTTT
1 TATATTAAATAAAAATAACTAACAATAAATTTTAAAATTTATAAACAAATAAATTAACTTTGTTT
* * * **
8387905 ATAAAATAAAATAGCGCTTATTATGTTCTAATGCCTAAATTATTCCTATTGCTTTTTTATTCTAC
66 ACAAAATAAAATAGCGCTTATTAAGTTCTAATGCCTAAATTATCCCTATTAATTTTTTATTCTAC
* *
8387970 CTAAAATATCCCTATTAA-TTTTTATACTTCTAAAATACCCTTATT
131 CTAAAATACCCCTATTAATTTTTTATACTCCTAAAATACCCTTATT
* * * *
8388015 TATATTAAATAAAAAATAACTAATAATAAGATTTTAAAATTTATAAACAAATTAATTAATTTTTT
1 TATATTAAAT-AAAAATAACTAACAATAA-ATTTTAAAATTTATAAACAAATAAATTAACTTTGT
* * *
8388080 TTACAAAATACCTAAATTGCTG-TTATTAAGTTTTAATGCTTAAATTATCCCTATTAATTTTTTA
64 TTACAAAATA---AAATAGC-GCTTATTAAGTTCTAATGCCTAAATTATCCCTATTAATTTTTTA
8388144 TTCTACCTAAAATACCCCTATTAATTTTTTATACTCCTAAA
125 TTCTACCTAAAATACCCCTATTAATTTTTTATACTCCTAAA
8388185 GGTTTCTTAC
Statistics
Matches: 147, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
175 10 0.07
176 16 0.11
177 40 0.27
180 65 0.44
181 16 0.11
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.43
Consensus pattern (176 bp):
TATATTAAATAAAAATAACTAACAATAAATTTTAAAATTTATAAACAAATAAATTAACTTTGTTT
ACAAAATAAAATAGCGCTTATTAAGTTCTAATGCCTAAATTATCCCTATTAATTTTTTATTCTAC
CTAAAATACCCCTATTAATTTTTTATACTCCTAAAATACCCTTATT
Found at i:8390904 original size:36 final size:36
Alignment explanation
Indices: 8390857--8390926 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
8390847 TGCTGTTGCT
* * *
8390857 GAAGATGATCGGAATTTTGATAACTTTCTCGAGGAG
1 GAAGATGATCGGAACTCTGATAACTTTCCCGAGGAG
*
8390893 GAAGATGATCGGAGCTCTGATAACTTTCCCGAGG
1 GAAGATGATCGGAACTCTGATAACTTTCCCGAGG
8390927 CTCATGCTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (36 bp):
GAAGATGATCGGAACTCTGATAACTTTCCCGAGGAG
Found at i:8391044 original size:51 final size:50
Alignment explanation
Indices: 8390897--8391646 Score: 470
Period size: 51 Copynumber: 14.8 Consensus size: 50
8390887 GAGGAGGAAG
* * *
8390897 ATGATCGGAGCTCTGATAACTTTCC--CGAGGCTC-ATGCTGCTGCTGTTGAAG
1 ATGATCGGAACTCTGATAACTTTCCGAGGAGGC-CGATGCTG-T--TGTTGAAT
* * * * * *
8390948 ATGATTGAAACTCTGATGATAACTTTCCGA--AAGCTGTTGCTGTTGTTGAAC
1 ATGATCGGAACTC---TGATAACTTTCCGAGGAGGCCGATGCTGTTGTTGAAT
* * *
8390999 ATGATTGGAACTCTGATAACTTTCCAGAGGAGGCCGATGCAGTTGTTGAAG
1 ATGATCGGAACTCTGATAACTTTCC-GAGGAGGCCGATGCTGTTGTTGAAT
* ** ** *
8391050 ATG-TCCCG-ACTCCTGATAACTTTCTCGAGGCTG-ATATTGCTGTTGTTGAAA
1 ATGAT-CGGAACT-CTGATAACTTTC-CGAGGAGGCCGA-TGCTGTTGTTGAAT
* * *
8391101 ATGATCGGAACTCTGATAACTTTCCCGAGGAGGCTGACGCTGTTGTTGATGAAG
1 ATGATCGGAACTCTGATAACTTT-CCGAGGAGGCCGATGCTGTTG-T--TGAAT
* * * *
8391155 ATGATCGGAACTCTGACAACTCTCCCGATGAGGCTGATGCTGTTGTTGAAT
1 ATGATCGGAACTCTGATAACT-TTCCGAGGAGGCCGATGCTGTTGTTGAAT
* * * * * *
8391206 ATGATCTGAGCTCTTATAAGTTTCC--CGAGGCTGATGCTGTTGTTGAAT
1 ATGATCGGAACTCTGATAACTTTCCGAGGAGGCCGATGCTGTTGTTGAAT
* * * * * * * *
8391254 ATGATCTGAGCTCTTAGAAGTTTCC--CGAGGCTGATGCTGTTGTTTAAT
1 ATGATCGGAACTCTGATAACTTTCCGAGGAGGCCGATGCTGTTGTTGAAT
* * * *
8391302 ATGATTTGG-ACTCTGATAACTTTCTCGAGGAGGACGAAGCTCTTGTTGAAT
1 ATGA-TCGGAACTCTGATAACTTTC-CGAGGAGGCCGATGCTGTTGTTGAAT
** * * * * * *
8391353 ATGATTTGAGCTCTTATAAGTTTCTC---GAGGCTGATACTGTTGTTGAAG
1 ATGATCGGAACTCTGATAACTTTC-CGAGGAGGCCGATGCTGTTGTTGAAT
* * * **
8391401 ATGATCGGAACTTTGATAAATATCTCGAGGAGGTGGATGCTGTTGTTGAAT
1 ATGATCGGAACTCTGATAACTTTC-CGAGGAGGCCGATGCTGTTGTTGAAT
* * * * *
8391452 ATGATCTGAGCTCTTATAAGTTTCCCGAGGAGGCCGATGCTGTTGTTGAAG
1 ATGATCGGAACTCTGATAACTTT-CCGAGGAGGCCGATGCTGTTGTTGAAT
* * * * **
8391503 ATGATCGGAACTTTGATAAATATCTAGAGGAGGTGGATGCTGTTGTTGAAT
1 ATGATCGGAACTCTGATAACTTTC-CGAGGAGGCCGATGCTGTTGTTGAAT
* * * * *
8391554 ACGATCGGAACTCTTAGAAGTTTCCCGAGGAGGCCGATGCTGTTGTTGAAG
1 ATGATCGGAACTCTGATAACTTT-CCGAGGAGGCCGATGCTGTTGTTGAAT
* * * * *
8391605 ATCAACAGAGCTCTGATAACTTTCTCGAGGAGGTCGATGCTG
1 ATGATCGGAACTCTGATAACTTTC-CGAGGAGGCCGATGCTG
8391647 CTGCTGGCTC
Statistics
Matches: 553, Mismatches: 113, Indels: 66
0.76 0.15 0.09
Matches are distributed among these distances:
48 130 0.24
49 5 0.01
50 13 0.02
51 329 0.59
52 10 0.02
53 2 0.00
54 63 0.11
55 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
ATGATCGGAACTCTGATAACTTTCCGAGGAGGCCGATGCTGTTGTTGAAT
Found at i:8391533 original size:102 final size:100
Alignment explanation
Indices: 8391087--8391646 Score: 542
Period size: 102 Copynumber: 5.5 Consensus size: 100
8391077 AGGCTGATAT
* * * * *
8391087 TGCTGTTGTTGAAAATGATCGGAACTCTGATAACTTTCCCGAGGAGGCTGACGCTGTTGTTGATG
1 TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATTTCTCGAGGAGG-TGATGCTGTTG-T--TG
* * * * * * *
8391152 AAGATGATCGGAACTCTGACAACTCTCCCGATGAGGCTGA
62 AATATGATCTGAGCTCTTAGAAGTTTCCCGA-GAGGCTGA
* * * * * *
8391192 TGCTGTTGTTGAATATGATCTGAGCTCTT-ATAAGTTTCCCGA-G-GCTGATGCTGTTGTTGAAT
1 TGCTGTTGTTGAAGATGATCGGAACT-TTGATAAATTTCTCGAGGAGGTGATGCTGTTGTTGAAT
8391254 ATGATCTGAGCTCTTAGAAGTTTCCC--GAGGCTGA
65 ATGATCTGAGCTCTTAGAAGTTTCCCGAGAGGCTGA
* * * * * * * *
8391288 TGCTGTTGTTTAATATGATTTGG-ACTCTGATAACTTTCTCGAGGAGGACGAAGCTCTTGTTGAA
1 TGCTGTTGTTGAAGATGA-TCGGAACTTTGATAAATTTCTCGAGGAGG-TGATGCTGTTGTTGAA
* * *
8391352 TATGATTTGAGCTCTTATAAGTTTCTC--GAGGCTGA
64 TATGATCTGAGCTCTTAGAAGTTTCCCGAGAGGCTGA
* *
8391387 TACTGTTGTTGAAGATGATCGGAACTTTGATAAATATCTCGAGGAGGTGGATGCTGTTGTTGAAT
1 TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATTTCTCGAGGAGGT-GATGCTGTTGTTGAAT
* *
8391452 ATGATCTGAGCTCTTATAAGTTTCCCGAGGAGGCCGA
65 ATGATCTGAGCTCTTAGAAGTTTCCCGA-GAGGCTGA
* *
8391489 TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATATCTAGAGGAGGTGGATGCTGTTGTTGAAT
1 TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATTTCTCGAGGAGGT-GATGCTGTTGTTGAAT
* * * *
8391554 ACGATCGGAACTCTTAGAAGTTTCCCGAGGAGGCCGA
65 ATGATCTGAGCTCTTAGAAGTTTCCCGA-GAGGCTGA
* * * * * *
8391591 TGCTGTTGTTGAAGATCAACAGAGCTCTGATAACTTTCTCGAGGAGGTCGATGCTG
1 TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATTTCTCGAGGAGGT-GATGCTG
8391647 CTGCTGGCTC
Statistics
Matches: 388, Mismatches: 56, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
95 1 0.00
96 38 0.10
97 3 0.01
98 4 0.01
99 143 0.37
101 1 0.00
102 160 0.41
103 1 0.00
104 1 0.00
105 35 0.09
106 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (100 bp):
TGCTGTTGTTGAAGATGATCGGAACTTTGATAAATTTCTCGAGGAGGTGATGCTGTTGTTGAATA
TGATCTGAGCTCTTAGAAGTTTCCCGAGAGGCTGA
Found at i:8392098 original size:37 final size:37
Alignment explanation
Indices: 8392036--8392109 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
8392026 ATTATTGTTA
*
8392036 GAGAATATAGATTCAAATGCTTGTAACTAAATAATTT
1 GAGAATATAGATTCAAATGATTGTAACTAAATAATTT
* * *
8392073 GAGAATATAGATTCGAAT-ATATGTAAGTGAATAATTT
1 GAGAATATAGATTCAAATGAT-TGTAACTAAATAATTT
8392110 TTTAAGGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (37 bp):
GAGAATATAGATTCAAATGATTGTAACTAAATAATTT
Found at i:8392501 original size:48 final size:49
Alignment explanation
Indices: 8392411--8392512 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 49
8392401 TAAGAAATTT
*
8392411 TTCATTTTCATTTTACTAATTTTTTAGTAAGATTCAGATATAGTTTGTA
1 TTCATTTTCAGTTTACTAATTTTTTAGTAAGATTCAGATATAGTTTGTA
8392460 TTCATTTTCAGTTTACTAA-TTTTTAGTAAGATTCAGATATAGTTTGTA
1 TTCATTTTCAGTTTACTAATTTTTTAGTAAGATTCAGATATAGTTTGTA
8392508 TTCAT
1 TTCAT
8392513 AAACATAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 34 0.65
49 18 0.35
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (49 bp):
TTCATTTTCAGTTTACTAATTTTTTAGTAAGATTCAGATATAGTTTGTA
Found at i:8395547 original size:19 final size:19
Alignment explanation
Indices: 8395521--8395560 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
8395511 GTCCACTGAA
8395521 TTTTTTTAAATATA-TTAT
1 TTTTTTTAAATATAGTTAT
8395539 TTTTATTTAAATATAGTTAT
1 TTTT-TTTAAATATAGTTAT
8395559 TT
1 TT
8395561 CATATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 10 0.50
20 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTTTAAATATAGTTAT
Found at i:8395568 original size:19 final size:19
Alignment explanation
Indices: 8395527--8395568 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8395517 TGAATTTTTT
* *
8395527 TAAATATATTATTTTTATT
1 TAAATATATTATTTTCATA
8395546 TAAATATAGTTA-TTTCATA
1 TAAATATA-TTATTTTCATA
8395565 TAAA
1 TAAA
8395569 ATAATCATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
TAAATATATTATTTTCATA
Found at i:8400092 original size:23 final size:23
Alignment explanation
Indices: 8400066--8400124 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
8400056 ACGGATTTCC
*
8400066 ACCCAAACACACCAGAATATCCA
1 ACCCAAACACACCAAAATATCCA
8400089 ACCCAAACACACCAAAATATCCA
1 ACCCAAACACACCAAAATATCCA
*
8400112 ACCTAAACACACC
1 ACCCAAACACACC
8400125 CGGAATATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.49, C:0.41, G:0.02, T:0.08
Consensus pattern (23 bp):
ACCCAAACACACCAAAATATCCA
Found at i:8401633 original size:5 final size:5
Alignment explanation
Indices: 8401615--8401650 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
8401605 TGTTTCTTTT
8401615 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
8401651 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:8407752 original size:15 final size:15
Alignment explanation
Indices: 8407732--8407773 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
8407722 TATATTTGCA
8407732 TATATATTTTCATTG
1 TATATATTTTCATTG
*
8407747 TATATATTATTCATTT
1 TATATATT-TTCATTG
8407763 TACTATATTTT
1 TA-TATATTTT
8407774 ATTTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 8 0.33
16 10 0.42
17 6 0.25
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATATTTTCATTG
Found at i:8407890 original size:15 final size:14
Alignment explanation
Indices: 8407865--8407908 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
8407855 CATATTATTT
8407865 TTATATATTATAAA
1 TTATATATTATAAA
*
8407879 TTATATTATTATACA
1 TTATA-TATTATAAA
*
8407894 TTTTAT-TTATAAA
1 TTATATATTATAAA
8407907 TT
1 TT
8407909 TAGCATATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 8 0.31
14 6 0.23
15 12 0.46
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATATATTATAAA
Found at i:8408013 original size:22 final size:21
Alignment explanation
Indices: 8407979--8408019 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
8407969 ACTTATTAAA
*
8407979 TCATTATTTTTATATATTTCC
1 TCATTATTATTATATATTTCC
8408000 TCATATATTATTATATATTT
1 TCAT-TATTATTATATATTT
8408020 TATTACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (21 bp):
TCATTATTATTATATATTTCC
Found at i:8408031 original size:14 final size:15
Alignment explanation
Indices: 8408011--8408044 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8408001 CATATATTAT
8408011 TATATATTTTATTACA
1 TATAT-TTTTATTACA
8408027 TATATTTTTATTAC-
1 TATATTTTTATTACA
8408041 TATA
1 TATA
8408045 CGATTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 9 0.50
16 5 0.28
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTTTTATTACA
Found at i:8409230 original size:136 final size:137
Alignment explanation
Indices: 8408998--8409271 Score: 496
Period size: 136 Copynumber: 2.0 Consensus size: 137
8408988 GCCCATTCAA
* *
8408998 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTACTC
1 GTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTACTC
8409063 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
8409127 CATTTGG
131 CATTTGG
* *
8409134 GTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTT
1 GTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTACTC
*
8409199 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
8409264 CATTTGG
131 CATTTGG
8409271 G
1 G
8409272 GAGACTACTC
Statistics
Matches: 132, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
136 110 0.83
137 22 0.17
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
GTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTACTC
AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
CATTTGG
Found at i:8411092 original size:25 final size:26
Alignment explanation
Indices: 8411058--8411166 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
8411048 CATGAAATTC
8411058 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
8411083 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
8411109 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
8411135 TTATCATGGAACATTTATCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
8411161 TTATCA
1 TTATCA
8411167 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 24 0.30
26 56 0.70
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:8412583 original size:29 final size:29
Alignment explanation
Indices: 8412521--8412588 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8412511 TTTATTAAAT
* * *
8412521 TTTTAAATATAAATTATTTAATATATATT
1 TTTTAAATTTAGATTATTTAATATATATA
* *
8412550 TTTTATATTTAGATTATTATAATTTA-ATA
1 TTTTAAATTTAGATTATT-TAATATATATA
8412579 TTTTAAATTT
1 TTTTAAATTT
8412589 TTATATAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 26 0.81
30 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (29 bp):
TTTTAAATTTAGATTATTTAATATATATA
Found at i:8414900 original size:22 final size:22
Alignment explanation
Indices: 8414857--8414901 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8414847 AAATATACAT
*
8414857 AATATACATATATATATATAAA
1 AATATACATATAGATATATAAA
*
8414879 AATATATATATGAGATAT-TAAA
1 AATATACATAT-AGATATATAAA
8414901 A
1 A
8414902 TGTATCTGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (22 bp):
AATATACATATAGATATATAAA
Found at i:8419094 original size:17 final size:17
Alignment explanation
Indices: 8419067--8419128 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
8419057 ACTCCCCCTA
*
8419067 TTTACTTCCCCTCAAACT
1 TTTACTTCCCC-AAAACT
8419085 TTTA-TTCCCCAAAACTT
1 TTTACTTCCCCAAAAC-T
* *
8419102 TTTATTTTCCCCCTAAACT
1 TTTA-CTT-CCCCAAAACT
8419121 TTTACTTC
1 TTTACTTC
8419129 TCACCTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 4 0.11
17 12 0.32
18 6 0.16
19 7 0.19
20 8 0.22
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTACTTCCCCAAAACT
Found at i:8419261 original size:17 final size:17
Alignment explanation
Indices: 8419241--8419287 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
8419231 CACATTTTAT
8419241 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
8419258 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
*
8419276 A-GATTTATATTA
1 ATTATTTATATTA
8419288 AAATTGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.12
17 13 0.50
18 8 0.31
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:8421093 original size:51 final size:51
Alignment explanation
Indices: 8421009--8421106 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
8420999 TGGATAATAT
* *
8421009 GGATCCGGATATGCCACCACAGGTGAAGTTACCGGGGCTTGGGGATAGTGC
1 GGATCCGGATATGCCACCACAGGTGAAGCTACCGGGGCTTGAGGATAGTGC
* *
8421060 GGATCCGGATATGCCACCACGGGTGACA-CTACCGGGGGTTGAGGATA
1 GGATCCGGATATGCCACCACAGGTGA-AGCTACCGGGGCTTGAGGATA
8421107 ACCTACAGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.18
Consensus pattern (51 bp):
GGATCCGGATATGCCACCACAGGTGAAGCTACCGGGGCTTGAGGATAGTGC
Found at i:8422023 original size:2 final size:2
Alignment explanation
Indices: 8422016--8422054 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8422006 ATAAAACCAA
8422016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8422055 CTTCTAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8422811 original size:14 final size:14
Alignment explanation
Indices: 8422776--8422803 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8422766 AATATAAAGT
8422776 AGATTTAGAGTTTA
1 AGATTTAGAGTTTA
8422790 AGATTTAGAGTTTA
1 AGATTTAGAGTTTA
8422804 GGGTTTAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (14 bp):
AGATTTAGAGTTTA
Found at i:8428308 original size:10 final size:9
Alignment explanation
Indices: 8428282--8428312 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8428272 TTATGTGTTC
8428282 TTTATTTTA
1 TTTATTTTA
8428291 TTTATTTTA
1 TTTATTTTA
8428300 TTCTATTTTA
1 TT-TATTTTA
8428310 TTT
1 TTT
8428313 TTCACATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:8434584 original size:21 final size:21
Alignment explanation
Indices: 8434551--8434599 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
8434541 ATTTTTCTAA
* *
8434551 AAAT-AATCAAATAATCAACC
1 AAATAAATTAAATAATAAACC
*
8434571 TAATAAATTAAATAATAAACC
1 AAATAAATTAAATAATAAACC
8434592 AAATAAAT
1 AAATAAAT
8434600 AGTTGAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAAATTAAATAATAAACC
Found at i:8435520 original size:8 final size:8
Alignment explanation
Indices: 8435507--8435540 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
8435497 TTTGGCTCTC
8435507 TTTTTCTT
1 TTTTTCTT
8435515 TTTTTC-T
1 TTTTTCTT
8435522 TTTTTCTT
1 TTTTTCTT
*
8435530 TTTTACTT
1 TTTTTCTT
8435538 TTT
1 TTT
8435541 CCGAATGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:8435524 original size:7 final size:7
Alignment explanation
Indices: 8435507--8435540 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
8435497 TTTGGCTCTC
8435507 TTTTTCTT
1 TTTTTC-T
8435515 TTTTTCT
1 TTTTTCT
8435522 TTTTTCT
1 TTTTTCT
8435529 TTTTTACT
1 TTTTT-CT
8435537 TTTT
1 TTTT
8435541 CCGAATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 13 0.52
8 12 0.48
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:8435527 original size:15 final size:15
Alignment explanation
Indices: 8435507--8435540 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
8435497 TTTGGCTCTC
*
8435507 TTTTTCTTTTTTTCT
1 TTTTTCTTTTTTACT
8435522 TTTTTCTTTTTTACT
1 TTTTTCTTTTTTACT
8435537 TTTT
1 TTTT
8435541 CCGAATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTACT
Found at i:8437311 original size:11 final size:11
Alignment explanation
Indices: 8437297--8437323 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8437287 ATAAATTAGA
8437297 ATTTTATTTTT
1 ATTTTATTTTT
8437308 ATTTTATTTTT
1 ATTTTATTTTT
8437319 ATTTT
1 ATTTT
8437324 TTATATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:8437665 original size:2 final size:2
Alignment explanation
Indices: 8437658--8437687 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8437648 ACTTAAACTG
8437658 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8437688 TTGGTGAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8437943 original size:102 final size:102
Alignment explanation
Indices: 8437767--8437955 Score: 378
Period size: 102 Copynumber: 1.9 Consensus size: 102
8437757 ACAATTGTAG
8437767 ACTCTCTTCCCTTTCAAAGGCCACTTTAGTTAGGTAATCAGCATAATTATTAGTCTCTCTAGGGA
1 ACTCTCTTCCCTTTCAAAGGCCACTTTAGTTAGGTAATCAGCATAATTATTAGTCTCTCTAGGGA
8437832 AGTGTTGTAAGATTCATTGTCTGGCAAAAGCTGATGA
66 AGTGTTGTAAGATTCATTGTCTGGCAAAAGCTGATGA
8437869 ACTCTCTTCCCTTTCAAAGGCCACTTTAGTTAGGTAATCAGCATAATTATTAGTCTCTCTAGGGA
1 ACTCTCTTCCCTTTCAAAGGCCACTTTAGTTAGGTAATCAGCATAATTATTAGTCTCTCTAGGGA
8437934 AGTGTTGTAAGATTCATTGTCT
66 AGTGTTGTAAGATTCATTGTCT
8437956 ATCCTTAAGT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 87 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (102 bp):
ACTCTCTTCCCTTTCAAAGGCCACTTTAGTTAGGTAATCAGCATAATTATTAGTCTCTCTAGGGA
AGTGTTGTAAGATTCATTGTCTGGCAAAAGCTGATGA
Found at i:8440026 original size:24 final size:24
Alignment explanation
Indices: 8440006--8440056 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
8439996 AAGAAAAGCT
*
8440006 ATAATAATAATTATAATAAAAGTA
1 ATAATAATAAATATAATAAAAGTA
* *
8440030 ATAATAATAAATATAACAATAGTA
1 ATAATAATAAATATAATAAAAGTA
8440054 ATA
1 ATA
8440057 TTAGTGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAATAATAAATATAATAAAAGTA
Found at i:8440037 original size:6 final size:6
Alignment explanation
Indices: 8440006--8440163 Score: 62
Period size: 6 Copynumber: 26.5 Consensus size: 6
8439996 AAGAAAAGCT
* * *
8440006 ATAATA ATAATT ATAATA A-AAGTA ATAATA ATAA-A TATAACA ATAGTA
1 ATAATA ATAATA ATAATA ATAA-TA ATAATA ATAATA -ATAATA ATAATA
* * * * * **
8440054 ATATTA GTGATA A-AA-A ATAATA GCT-ATA AAAATA A-ACATA ATAACC
1 ATAATA ATAATA ATAATA ATAATA -ATAATA ATAATA ATA-ATA ATAATA
* * * *
8440100 ATGACA ATAAAGA ATAATA GTAATA ATAATA ATAATA ATGAA-A ATAA-A
1 ATAATA AT-AATA ATAATA ATAATA ATAATA ATAATA AT-AATA ATAATA
*
8440148 AGTAATA TTAATA ATA
1 A-TAATA ATAATA ATA
8440164 CATTATATTA
Statistics
Matches: 114, Mismatches: 24, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
4 2 0.02
5 11 0.10
6 89 0.78
7 12 0.11
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.28
Consensus pattern (6 bp):
ATAATA
Found at i:8440126 original size:9 final size:9
Alignment explanation
Indices: 8440112--8440163 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
8440102 GACAATAAAG
*
8440112 AATAATAGT
1 AATAATAAT
8440121 AATAATAAT
1 AATAATAAT
8440130 AATAATAAT
1 AATAATAAT
8440139 GAA-AATAA-
1 -AATAATAAT
*
8440147 AAGTAATATT
1 AA-TAATAAT
8440157 AATAATA
1 AATAATA
8440164 CATTATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 2 0.05
9 31 0.84
10 4 0.11
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (9 bp):
AATAATAAT
Found at i:8440526 original size:3 final size:3
Alignment explanation
Indices: 8440512--8440713 Score: 195
Period size: 3 Copynumber: 67.3 Consensus size: 3
8440502 AAACATACAC
*
8440512 TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
8440560 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
8440607 CACA -AA TAA GTAA -ATA TAA T-A TAA TAA TAA TAC TAA -AA TAA -AG
1 TA-A TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
8440650 TAA TAA -AA AAA TAA TAC TACA TACA TATA TAA TAA -AA TTA TACA CTAA
1 TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A TAA TAA TAA TAA TA-A -TAA
*
8440698 TAT TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
8440714 GATCAATTAA
Statistics
Matches: 169, Mismatches: 16, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
2 12 0.07
3 139 0.82
4 16 0.09
5 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8440692 original size:26 final size:23
Alignment explanation
Indices: 8440652--8440713 Score: 63
Period size: 26 Copynumber: 2.6 Consensus size: 23
8440642 AAATAAAGTA
*
8440652 ATAAAAAAATAATACTACATACATAT
1 ATAATAAAATAATAC-AC-TA-ATAT
*
8440678 ATAATAAAATTATACACTAATAT
1 ATAATAAAATAATACACTAATAT
8440701 -TAATAATAATAAT
1 ATAATAA-AATAAT
8440714 GATCAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 6 0.19
23 9 0.28
24 2 0.06
25 2 0.06
26 13 0.41
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (23 bp):
ATAATAAAATAATACACTAATAT
Found at i:8443591 original size:20 final size:18
Alignment explanation
Indices: 8443565--8443617 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
8443555 TTTCAGCTGC
8443565 TTGTTTTCTGCTTTTCTTT
1 TTGTTTTCTGCTTTTC-TT
* *
8443584 TCTGTTTTTTGGTTTTCTT
1 T-TGTTTTCTGCTTTTCTT
*
8443603 TTGTATTCTGCTTTT
1 TTGTTTTCTGCTTTT
8443618 GTTTGTTGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 11 0.39
19 4 0.14
20 13 0.46
ACGTcount: A:0.02, C:0.13, G:0.13, T:0.72
Consensus pattern (18 bp):
TTGTTTTCTGCTTTTCTT
Found at i:8446353 original size:11 final size:11
Alignment explanation
Indices: 8446337--8446372 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
8446327 TAACAACAAT
*
8446337 ATAGTAGTAAC
1 ATAGTAGTAAA
8446348 ATAGTAGTAAA
1 ATAGTAGTAAA
*
8446359 ATAGTAGCAAA
1 ATAGTAGTAAA
8446370 ATA
1 ATA
8446373 ATAAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.25
Consensus pattern (11 bp):
ATAGTAGTAAA
Found at i:8447759 original size:16 final size:16
Alignment explanation
Indices: 8447740--8447778 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
8447730 TTAAAATATA
8447740 TATAAATTTTGAATTT
1 TATAAATTTTGAATTT
8447756 TATAAATATTTTGAATTT
1 TAT-AA-ATTTTGAATTT
8447774 T-TAAA
1 TATAAA
8447779 AATTATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.05
16 5 0.24
17 3 0.14
18 12 0.57
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (16 bp):
TATAAATTTTGAATTT
Found at i:8447759 original size:18 final size:18
Alignment explanation
Indices: 8447745--8447794 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
8447735 ATATATATAA
8447745 ATTTTGAATTTTATAAAT
1 ATTTTGAATTTTATAAAT
*
8447763 ATTTTGAATTTTTAAAAATT
1 ATTTTGAA-TTTTATAAA-T
8447783 ATTTTGAATTTT
1 ATTTTGAATTTT
8447795 TTTGTAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 8 0.28
19 12 0.41
20 9 0.31
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (18 bp):
ATTTTGAATTTTATAAAT
Found at i:8447787 original size:20 final size:19
Alignment explanation
Indices: 8447745--8447795 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
8447735 ATATATATAA
*
8447745 ATTTTGAA-TTTTATAAAT
1 ATTTTGAATTTTTAAAAAT
8447763 ATTTTGAATTTTTAAAAATT
1 ATTTTGAATTTTTAAAAA-T
8447783 ATTTTGAATTTTT
1 ATTTTGAATTTTT
8447796 TTGTAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 8 0.27
19 8 0.27
20 14 0.47
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:8447989 original size:16 final size:15
Alignment explanation
Indices: 8447953--8447991 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
8447943 ATGACTCAAA
8447953 AAATTCGAATAACTC
1 AAATTCGAATAACTC
*
8447968 -AATTCGATTAACTC
1 AAATTCGAATAACTC
8447982 GAAATTCGAA
1 -AAATTCGAA
8447992 AAAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 13 0.65
16 7 0.35
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (15 bp):
AAATTCGAATAACTC
Found at i:8448131 original size:13 final size:13
Alignment explanation
Indices: 8448115--8448139 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8448105 ATTATTTTGG
8448115 CTCATATCTGTTA
1 CTCATATCTGTTA
8448128 CTCATATCTGTT
1 CTCATATCTGTT
8448140 GCATCGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.48
Consensus pattern (13 bp):
CTCATATCTGTTA
Found at i:8457103 original size:18 final size:19
Alignment explanation
Indices: 8457082--8457117 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8457072 GATTAAATCA
8457082 TAAAAAAAATAGA-AAAAT
1 TAAAAAAAATAGATAAAAT
*
8457100 TAAAAAATATAGATAAAA
1 TAAAAAAAATAGATAAAA
8457118 AAAATTAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
TAAAAAAAATAGATAAAAT
Found at i:8458005 original size:2 final size:2
Alignment explanation
Indices: 8457993--8458030 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8457983 TTTATCTTAA
*
8457993 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8458031 TTCATATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:8461645 original size:152 final size:152
Alignment explanation
Indices: 8461369--8461676 Score: 607
Period size: 152 Copynumber: 2.0 Consensus size: 152
8461359 TTCGGCCACA
8461369 TCTGATAAACAAAAGGCTGAAAACATAACAATTATGAAAAGACAGAATTTAGTCCCATTAACAAA
1 TCTGATAAACAAAAGGCTGAAAACATAACAATTATGAAAAGACAGAATTTAGTCCCATTAACAAA
8461434 CCACTATTATACATTACACATTTCAACAAAAGCTACTCCAAAAAAGAAATTATAATAAAATGAAT
66 CCACTATTATACATTACACATTTCAACAAAAGCTACTCCAAAAAAGAAATTATAATAAAATGAAT
8461499 TGAAGTCCAAACCTGATTATAC
131 TGAAGTCCAAACCTGATTATAC
*
8461521 TCTGATAAACAAAAGGCTGAAAACATAACAATTATGTAAAGACAGAATTTAGTCCCATTAACAAA
1 TCTGATAAACAAAAGGCTGAAAACATAACAATTATGAAAAGACAGAATTTAGTCCCATTAACAAA
8461586 CCACTATTATACATTACACATTTCAACAAAAGCTACTCCAAAAAAGAAATTATAATAAAATGAAT
66 CCACTATTATACATTACACATTTCAACAAAAGCTACTCCAAAAAAGAAATTATAATAAAATGAAT
8461651 TGAAGTCCAAACCTGATTATAC
131 TGAAGTCCAAACCTGATTATAC
8461673 TCTG
1 TCTG
8461677 GCAGGTCCCC
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 155 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.25
Consensus pattern (152 bp):
TCTGATAAACAAAAGGCTGAAAACATAACAATTATGAAAAGACAGAATTTAGTCCCATTAACAAA
CCACTATTATACATTACACATTTCAACAAAAGCTACTCCAAAAAAGAAATTATAATAAAATGAAT
TGAAGTCCAAACCTGATTATAC
Found at i:8469955 original size:11 final size:11
Alignment explanation
Indices: 8469935--8469983 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
8469925 TTTTCTTACT
8469935 ATTAAATTTAA
1 ATTAAATTTAA
*
8469946 ATTAATTTTAA
1 ATTAAATTTAA
8469957 A-T-AATTT-A
1 ATTAAATTTAA
*
8469965 ATTAAAATTAA
1 ATTAAATTTAA
8469976 ATTAAATT
1 ATTAAATT
8469984 AGAGAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
8 2 0.06
9 5 0.16
10 5 0.16
11 19 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:8469975 original size:19 final size:20
Alignment explanation
Indices: 8469939--8469977 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8469929 CTTACTATTA
**
8469939 AATTTAAATTAATTTTAAAT
1 AATTTAAATTAAAATTAAAT
8469959 AATTT-AATTAAAATTAAAT
1 AATTTAAATTAAAATTAAAT
8469978 TAAATTAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTTAAATTAAAATTAAAT
Found at i:8477358 original size:53 final size:53
Alignment explanation
Indices: 8477277--8477427 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
8477267 CTTACACGGT
* *
8477277 TCACATATCATACCGAAGCCATATCCCAGAC-ACGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTACGGTCTTATACGGAATCACATTA
* *
8477332 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTACGGTCTTATACGGAATCACATTA
** * *
8477385 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTACGGTCTTATACGG
8477428 GCACACTTGT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTACGGTCTTATACGGAATCACATTA
Found at i:8483041 original size:46 final size:46
Alignment explanation
Indices: 8482974--8483236 Score: 348
Period size: 46 Copynumber: 5.7 Consensus size: 46
8482964 TGGCAACCTG
*
8482974 TGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
8483020 TGTGTAAGACCGTGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
8483066 TGTGTAAGACCATGGTTGGAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
8483112 TGTGTAAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * * *
8483158 AGAATAAGACCATGGCTGAAAGATATCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
8483204 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
8483237 TCACGTCAAA
Statistics
Matches: 192, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 191 0.99
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:8483178 original size:138 final size:130
Alignment explanation
Indices: 8482925--8483236 Score: 383
Period size: 138 Copynumber: 2.3 Consensus size: 130
8482915 AGTGTGTTCT
8482925 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATAGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATAGT
* * ** * *
8482990 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGCAAC
*
8483055 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
* * * *
8483120 ACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAATAAGACCATGGCTGAAAGATATC
58 ACCATAGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGCTGAAAGATACC
8483185 ATGGCAAC
123 ATGGCAAC
* * * * * *
8483193 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8483237 TCACGTCAAA
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
130 46 0.30
135 1 0.01
137 2 0.01
138 106 0.68
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATAGT
TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGCAAC
Found at i:8483542 original size:23 final size:25
Alignment explanation
Indices: 8483498--8483543 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
8483488 ATAAATATAC
*
8483498 ATAAAATATATGGAAATGATGAAGG
1 ATAAAATATATGGAAATAATGAAGG
*
8483523 ATAAAATAT-T-GATATAATGAA
1 ATAAAATATATGGAAATAATGAA
8483544 ATGAATGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 1 0.05
25 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.28
Consensus pattern (25 bp):
ATAAAATATATGGAAATAATGAAGG
Found at i:8485372 original size:19 final size:20
Alignment explanation
Indices: 8485330--8485372 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
8485320 GTAAAGTTTG
8485330 TTGATAAATATTTTATATAA
1 TTGATAAATATTTTATATAA
* *
8485350 TTGATTAATATTTT-TATAT
1 TTGATAAATATTTTATATAA
8485369 TTGA
1 TTGA
8485373 AATTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTGATAAATATTTTATATAA
Found at i:8485889 original size:16 final size:16
Alignment explanation
Indices: 8485868--8485902 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
8485858 TTATACTAAA
8485868 CCTAAAAGGTAAAGTG
1 CCTAAAAGGTAAAGTG
8485884 CCTAAAAGGTAAAGTG
1 CCTAAAAGGTAAAGTG
8485900 CCT
1 CCT
8485903 TTTATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (16 bp):
CCTAAAAGGTAAAGTG
Found at i:8490966 original size:10 final size:10
Alignment explanation
Indices: 8490951--8490981 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8490941 ATATTACTAA
8490951 TTCGATTAAT
1 TTCGATTAAT
8490961 TTCGATTAAT
1 TTCGATTAAT
*
8490971 TTTGATTAAT
1 TTCGATTAAT
8490981 T
1 T
8490982 CGGTTAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (10 bp):
TTCGATTAAT
Found at i:8491111 original size:28 final size:28
Alignment explanation
Indices: 8491071--8491135 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
8491061 TTTTGATTTA
*
8491071 TTCAGTTAACTAACCGAATAAACTAAAT
1 TTCAGTTAACTAACCAAATAAACTAAAT
8491099 TTCAGTTAACTAACCAAATAAACTAAAT
1 TTCAGTTAACTAACCAAATAAACTAAAT
8491127 TTCAGTTAA
1 TTCAGTTAA
8491136 TTTATTTTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (28 bp):
TTCAGTTAACTAACCAAATAAACTAAAT
Found at i:8493341 original size:37 final size:37
Alignment explanation
Indices: 8493300--8493374 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
8493290 CAAAGGATGT
8493300 AAAAGAAAGCATCATGATTGATCAGTGTTGGAACAAA
1 AAAAGAAAGCATCATGATTGATCAGTGTTGGAACAAA
8493337 AAAAGAAAGCATCATGATTGATCAGTGTTGGAACAAA
1 AAAAGAAAGCATCATGATTGATCAGTGTTGGAACAAA
8493374 A
1 A
8493375 TTTAGGCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (37 bp):
AAAAGAAAGCATCATGATTGATCAGTGTTGGAACAAA
Found at i:8497730 original size:31 final size:31
Alignment explanation
Indices: 8497678--8497746 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
8497668 GTTACAAAAT
*
8497678 AGTCATTAAACTATTCGAAAGTTTTCATTTA
1 AGTCATTAAACTATTCAAAAGTTTTCATTTA
* * *
8497709 AGTCATTCAACTTTTCAAAAGTTTTTATTTA
1 AGTCATTAAACTATTCAAAAGTTTTCATTTA
8497740 AGTCATT
1 AGTCATT
8497747 TGGGCTGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (31 bp):
AGTCATTAAACTATTCAAAAGTTTTCATTTA
Found at i:8498832 original size:33 final size:34
Alignment explanation
Indices: 8498790--8498857 Score: 129
Period size: 33 Copynumber: 2.0 Consensus size: 34
8498780 TTTTTTATAA
8498790 TGTTTACTTCAGATTATTAC-AAAAAAATATATT
1 TGTTTACTTCAGATTATTACAAAAAAAATATATT
8498823 TGTTTACTTCAGATTATTACAAAAAAAATATATT
1 TGTTTACTTCAGATTATTACAAAAAAAATATATT
8498857 T
1 T
8498858 TGGCATAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 20 0.59
34 14 0.41
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (34 bp):
TGTTTACTTCAGATTATTACAAAAAAAATATATT
Found at i:8502423 original size:17 final size:18
Alignment explanation
Indices: 8502396--8502432 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8502386 CACAAGTGAT
8502396 TATTATTATTTATTTAAA
1 TATTATTATTTATTTAAA
*
8502414 TATT-TTATTTTTTTAAA
1 TATTATTATTTATTTAAA
8502431 TA
1 TA
8502433 AGGAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATTATTTATTTAAA
Found at i:8510979 original size:30 final size:31
Alignment explanation
Indices: 8510943--8511000 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
8510933 CAACCAAGTA
* *
8510943 AATTAATT-AATTTTTTAATTAAATAAATTT
1 AATTAATTAAAATTTTAAATTAAATAAATTT
*
8510973 AATTAATTAAAATTTTAAATTAATTAAA
1 AATTAATTAAAATTTTAAATTAAATAAA
8511001 GAGAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
AATTAATTAAAATTTTAAATTAAATAAATTT
Found at i:8510995 original size:17 final size:16
Alignment explanation
Indices: 8510941--8511000 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
8510931 TCCAACCAAG
*
8510941 TAAATTAATTAATTTT
1 TAAATTAATTAAATTT
* *
8510957 TTAATTAAATAAA-TT
1 TAAATTAATTAAATTT
8510972 T-AATTAATTAAAATTT
1 TAAATTAATT-AAATTT
8510988 TAAATTAATTAAA
1 TAAATTAATTAAA
8511001 GAGAAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 7 0.19
15 6 0.16
16 16 0.43
17 8 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAAATTAATTAAATTT
Found at i:8513752 original size:111 final size:111
Alignment explanation
Indices: 8513558--8513781 Score: 394
Period size: 111 Copynumber: 2.0 Consensus size: 111
8513548 TTAACAAGAT
*
8513558 AACAGGAGAAATATTTCATATCAAATTAAAGAAAGCCTACTTAATAAGATATGCATGCAGACTAC
1 AACAGGAGAAATATTTCATATCAAATTAAAGAAAGCCTACTTAATAAGATATGCATGCAGACCAC
8513623 ATCACTCTGAAACAATGTCAAACACGTTAGTTACATTTCAATAGCC
66 ATCACTCTGAAACAATGTCAAACACGTTAGTTACATTTCAATAGCC
*
8513669 AACAGGAGAAATATTTCATATCCAATTAAAGAAAGCCTACTTAATAAGATATGCATGCAGACCAC
1 AACAGGAGAAATATTTCATATCAAATTAAAGAAAGCCTACTTAATAAGATATGCATGCAGACCAC
* * * *
8513734 GTCAGTCTGAAACAATGTCAAACACGTTATTTTCATTTCAATAGCC
66 ATCACTCTGAAACAATGTCAAACACGTTAGTTACATTTCAATAGCC
8513780 AA
1 AA
8513782 TGAATCACGG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 107 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (111 bp):
AACAGGAGAAATATTTCATATCAAATTAAAGAAAGCCTACTTAATAAGATATGCATGCAGACCAC
ATCACTCTGAAACAATGTCAAACACGTTAGTTACATTTCAATAGCC
Found at i:8519161 original size:2 final size:2
Alignment explanation
Indices: 8519156--8519202 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8519146 TTAAATTTTT
*
8519156 TA TA TA AA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8519197 TA TA TA
1 TA TA TA
8519203 ATACATCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8521131 original size:11 final size:10
Alignment explanation
Indices: 8521103--8521150 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
8521093 CAATTAATTT
8521103 TTTTCTTTTA
1 TTTTCTTTTA
*
8521113 TGTTCTTTTAA
1 TTTTCTTTT-A
*
8521124 TTTTCTTTTT
1 TTTTCTTTTA
8521134 TTTTCCTTTTTA
1 TTTT-C-TTTTA
8521146 TTTTC
1 TTTTC
8521151 AATTCTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 12 0.39
11 11 0.35
12 8 0.26
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.77
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:8521133 original size:22 final size:21
Alignment explanation
Indices: 8521103--8521150 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
8521093 CAATTAATTT
8521103 TTTTCTTTTATGTT-CTTTTAA
1 TTTTCTTTT-TGTTCCTTTTAA
* *
8521124 TTTTCTTTTTTTTTCCTTTTTA
1 TTTTC-TTTTTGTTCCTTTTAA
8521146 TTTTC
1 TTTTC
8521151 AATTCTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTCTTTTTGTTCCTTTTAA
Found at i:8522928 original size:2 final size:2
Alignment explanation
Indices: 8522921--8522946 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8522911 CCCACAGAAA
8522921 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
8522947 GAAAAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8527311 original size:25 final size:25
Alignment explanation
Indices: 8527282--8527332 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8527272 TGAATTGGAC
8527282 TGGACCTGTCAGGTTGGACTAGAAA
1 TGGACCTGTCAGGTTGGACTAGAAA
8527307 TGGACCTGTCAGGTTGGACTAGAAA
1 TGGACCTGTCAGGTTGGACTAGAAA
8527332 T
1 T
8527333 TGATTGGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (25 bp):
TGGACCTGTCAGGTTGGACTAGAAA
Found at i:8527545 original size:26 final size:26
Alignment explanation
Indices: 8527516--8527569 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
8527506 AGCGAATCAA
*
8527516 TGGCGTGACTAGTTCGACCACTATTT
1 TGGCGCGACTAGTTCGACCACTATTT
8527542 TGGCGCGACTAGTTCGACCACTATTT
1 TGGCGCGACTAGTTCGACCACTATTT
8527568 TG
1 TG
8527570 TTTTTCAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (26 bp):
TGGCGCGACTAGTTCGACCACTATTT
Found at i:8530354 original size:21 final size:21
Alignment explanation
Indices: 8530328--8530380 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
8530318 CGCTGTTTAT
*
8530328 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
8530349 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
8530370 AATCTCACCGC
1 AATCTCACCGC
8530381 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:8532689 original size:51 final size:51
Alignment explanation
Indices: 8532618--8532778 Score: 250
Period size: 51 Copynumber: 3.2 Consensus size: 51
8532608 CTGATCACAT
*
8532618 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
8532669 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * * * *
8532720 TTGTCACTTATCACTGATCAGATAAGTGTAGTTGAGGTTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
8532771 TTGTCACT
1 TTATCACT
8532779 GATCAGAAGT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 103 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:8535653 original size:2 final size:2
Alignment explanation
Indices: 8535646--8535677 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8535636 TTTATAACAC
8535646 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8535678 AATGCTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8543282 original size:22 final size:19
Alignment explanation
Indices: 8543257--8543303 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8543247 TATAATTTTT
8543257 TTTAATATTATTAAAATAAATA
1 TTTAATA-T-TTAAAAT-AATA
8543279 TTT-ATATTTAAAATAATA
1 TTTAATATTTAAAATAATA
*
8543297 TATAATA
1 TTTAATA
8543304 AATCGAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 6 0.26
19 10 0.43
20 1 0.04
21 3 0.13
22 3 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTAATATTTAAAATAATA
Found at i:8543394 original size:19 final size:19
Alignment explanation
Indices: 8543370--8543408 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
8543360 CAATTTTATT
*
8543370 TTAATACTAAATTTTAACA
1 TTAATAATAAATTTTAACA
**
8543389 TTAATAATACTTTTTAACA
1 TTAATAATAAATTTTAACA
8543408 T
1 T
8543409 GCTAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAATAATAAATTTTAACA
Found at i:8545941 original size:30 final size:29
Alignment explanation
Indices: 8545905--8545989 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 29
8545895 CCAGCAGAAA
8545905 GACACAAATGACAAGGAAACAAACGGCAAG
1 GACACAAATGACAAGG-AACAAACGGCAAG
* *
8545935 GACACAAATGAGAAGGAACTGAACGGCAAG
1 GACACAAATGACAAGGAAC-AAACGGCAAG
*
8545965 GACACAGATGACAAGGGAACAAACG
1 GACACAAATGACAA-GGAACAAACG
8545990 ACATTGAAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
29 3 0.06
30 40 0.83
31 5 0.10
ACGTcount: A:0.49, C:0.19, G:0.27, T:0.05
Consensus pattern (29 bp):
GACACAAATGACAAGGAACAAACGGCAAG
Found at i:8545979 original size:15 final size:15
Alignment explanation
Indices: 8545905--8545980 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 15
8545895 CCAGCAGAAA
8545905 GACACAAATGACAAG
1 GACACAAATGACAAG
* * *
8545920 GAAACAAACGGCAAG
1 GACACAAATGACAAG
*
8545935 GACACAAATGAGAAG
1 GACACAAATGACAAG
* * *
8545950 GA-ACTGAACGGCAAG
1 GACAC-AAATGACAAG
*
8545965 GACACAGATGACAAG
1 GACACAAATGACAAG
8545980 G
1 G
8545981 GAACAAACGA
Statistics
Matches: 44, Mismatches: 15, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
14 2 0.05
15 40 0.91
16 2 0.05
ACGTcount: A:0.49, C:0.18, G:0.28, T:0.05
Consensus pattern (15 bp):
GACACAAATGACAAG
Found at i:8545992 original size:15 final size:14
Alignment explanation
Indices: 8545908--8545992 Score: 53
Period size: 15 Copynumber: 5.7 Consensus size: 14
8545898 GCAGAAAGAC
*
8545908 ACAAATGACAAGGAA
1 ACAAACGACAAGG-A
*
8545923 ACAAACGGCAAGGA
1 ACAAACGACAAGGA
* *
8545937 CACAAATGAGAAGGA
1 -ACAAACGACAAGGA
* *
8545952 ACTGAACGGCAAGGA
1 AC-AAACGACAAGGA
* *
8545967 CACAGATGACAAGGGA
1 -ACAAACGACAA-GGA
8545983 ACAAACGACA
1 ACAAACGACA
8545993 TTGAAGGGCA
Statistics
Matches: 51, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
14 3 0.06
15 43 0.84
16 5 0.10
ACGTcount: A:0.51, C:0.19, G:0.26, T:0.05
Consensus pattern (14 bp):
ACAAACGACAAGGA
Found at i:8547660 original size:31 final size:32
Alignment explanation
Indices: 8547614--8547680 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
8547604 ATGATCATTG
* *
8547614 AACTATTCAAAAAGTTTTCATTTAAGTTACTT
1 AACTATTCAAAAAGTTTTCATTTAAGTCACTA
* *
8547646 AACTATT-TAAAAGTTTTTATTTAAGTCACTA
1 AACTATTCAAAAAGTTTTCATTTAAGTCACTA
8547677 AACT
1 AACT
8547681 GTTAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 24 0.77
32 7 0.23
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (32 bp):
AACTATTCAAAAAGTTTTCATTTAAGTCACTA
Found at i:8548738 original size:2 final size:2
Alignment explanation
Indices: 8548731--8548776 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8548721 AATACATACG
8548731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8548773 AT AT
1 AT AT
8548777 GATGTGAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8549039 original size:2 final size:2
Alignment explanation
Indices: 8549032--8549061 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8549022 TCAAAAGCGC
*
8549032 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8549062 GATCCATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8551134 original size:25 final size:25
Alignment explanation
Indices: 8551084--8551154 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 25
8551074 CATTTTTAAG
* *
8551084 TTTATGATATAT-TATAT-TATGTAA
1 TTTATAATATATATATATATAT-AAA
8551108 TTTATAATATATATATATATATAAA
1 TTTATAATATATATATATATATAAA
*
8551133 -TTA-AATCTATAGTA-ATATATAA
1 TTTATAATATATA-TATATATATAA
8551155 TACTATAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 15 0.37
24 16 0.39
25 7 0.17
26 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.48
Consensus pattern (25 bp):
TTTATAATATATATATATATATAAA
Found at i:8551237 original size:15 final size:15
Alignment explanation
Indices: 8551219--8551254 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
8551209 TAAATGAAAA
8551219 AAATATAAA-AATATT
1 AAATATAAATAATA-T
8551234 AAATATAAATAATAT
1 AAATATAAATAATAT
8551249 AAATAT
1 AAATAT
8551255 TTTTTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATATAAATAATAT
Found at i:8553663 original size:32 final size:30
Alignment explanation
Indices: 8553621--8553688 Score: 73
Period size: 32 Copynumber: 2.2 Consensus size: 30
8553611 TTTTTATTTT
* *
8553621 TTTTGAAAATTTTAATTAACCTCACTTAAAAA
1 TTTTAAAAATTCTAATTAACCTCA--TAAAAA
* * *
8553653 TTTTAAAAATTCTCATTGATCTCATAAAAA
1 TTTTAAAAATTCTAATTAACCTCATAAAAA
8553683 TTTTAA
1 TTTTAA
8553689 TTAGACCCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 12 0.39
32 19 0.61
ACGTcount: A:0.43, C:0.12, G:0.03, T:0.43
Consensus pattern (30 bp):
TTTTAAAAATTCTAATTAACCTCATAAAAA
Found at i:8558075 original size:10 final size:10
Alignment explanation
Indices: 8558046--8558086 Score: 55
Period size: 10 Copynumber: 3.8 Consensus size: 10
8558036 TTGCATAGTG
8558046 ATATGTATAT
1 ATATGTATAT
8558056 CATGTATGTATAT
1 -A--TATGTATAT
8558069 ATATGTATAT
1 ATATGTATAT
8558079 ATATGTAT
1 ATATGTAT
8558087 GGAGAGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 17 0.61
11 1 0.04
12 1 0.04
13 9 0.32
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49
Consensus pattern (10 bp):
ATATGTATAT
Done.