Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 340 of 444
Found at i:98413032 original size:50 final size:49
Alignment explanation
Indices: 98412914--98413183 Score: 172
Period size: 46 Copynumber: 5.7 Consensus size: 49
98412904 GAGGTAAATT
* * *
98412914 GCCGATGCCATGTCCCAAACATAGTCTTACACTGATTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAATTATCATCATCGAG
* * * *
98412963 GCCGATGTCATGTCTCAGACATGGTCTTACACTAATTCTCGTAT-ATCCG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAATTATC--ATCAT-CGAG
* * *
98413013 GCTGATGCCATGTCCCAGACATGGTCTTACACTGA-CA-CATC-TCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAATTATCATCATCG-AG
* * ** * *
98413059 GTCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTC-TAGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-AATTATCATCATCGAG
* * ** * * *
98413105 GCTGATG-CATGTCCTAGACAT-GTCTTACACT-AGCACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAATTA-TCATCATCGAG
*
98413151 GCCGATGCCATGTCCCGGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
98413184 GGCTCACACC
Statistics
Matches: 174, Mismatches: 33, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.06
45 19 0.11
46 50 0.29
47 12 0.07
48 11 0.06
49 34 0.20
50 33 0.19
51 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAATTATCATCATCGAG
Found at i:98419604 original size:110 final size:111
Alignment explanation
Indices: 98419410--98419630 Score: 435
Period size: 110 Copynumber: 2.0 Consensus size: 111
98419400 TCTTAAAGTT
98419410 GTGTTCTGCCAGCTCTTGTTTCTATTCGAAAACCCCACCGAATCATTCATTCGGGTAGTGAATTC
1 GTGTTCTGCCAGCTCTTGTTTCTATTCGAAAACCCCACCGAATCATTCATTCGGGTAGTGAATTC
98419475 CTTTGATCTTTTAGATGAGGACTGATGTGATTTCCCCATTTGTCTC
66 CTTTGATCTTTTAGATGAGGACTGATGTGATTTCCCCATTTGTCTC
98419521 GTGTTCTGCCAGCTCTTGTTTCTATTCGAAAA-CCCACCGAATCATTCATTCGGGTAGTGAATTC
1 GTGTTCTGCCAGCTCTTGTTTCTATTCGAAAACCCCACCGAATCATTCATTCGGGTAGTGAATTC
98419585 CTTTGATCTTTTAGATGAGGACTGATGTGATTTCCCCATTTGTCTC
66 CTTTGATCTTTTAGATGAGGACTGATGTGATTTCCCCATTTGTCTC
98419631 TTCCTTGAGT
Statistics
Matches: 110, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
110 78 0.71
111 32 0.29
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (111 bp):
GTGTTCTGCCAGCTCTTGTTTCTATTCGAAAACCCCACCGAATCATTCATTCGGGTAGTGAATTC
CTTTGATCTTTTAGATGAGGACTGATGTGATTTCCCCATTTGTCTC
Found at i:98421669 original size:46 final size:46
Alignment explanation
Indices: 98421602--98421692 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
98421592 AAGAAAAAGG
*
98421602 AGTAAGTATAATAGCTTAGTAAGTTGCACATAAATAACTATACAAT
1 AGTAAGTATAATAGCTAAGTAAGTTGCACATAAATAACTATACAAT
*
98421648 AGTAAGTATAATAGCTAAGTAAGTTGTACATAAATAACTATACAA
1 AGTAAGTATAATAGCTAAGTAAGTTGCACATAAATAACTATACAA
98421693 CAACAATTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (46 bp):
AGTAAGTATAATAGCTAAGTAAGTTGCACATAAATAACTATACAAT
Found at i:98422119 original size:46 final size:46
Alignment explanation
Indices: 98421945--98422156 Score: 166
Period size: 46 Copynumber: 4.5 Consensus size: 46
98421935 TTGTCGATTC
* * *
98421945 CATGTCTCGGACATGGTCTTACACTGGCTA-TCATCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TCGA-GCCGATG
* *
98421993 CCATGTCCCAGACATGGTCTTACACTA--ACACATCTCGTAGCCAATG
1 -CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCG-AGCCGATG
* * * *
98422039 CATGTCCCAAACAT-GTCTTACATTAGC-TTACGTCTCGAGACCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACT-CATCTCGAG-CCGATG
* * * *
98422085 CATATCCTAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGA-GCCGATG
* *
98422131 CCATGTCTCGGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
98422157 GGCTCACACT
Statistics
Matches: 132, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.08
45 15 0.11
46 57 0.43
47 17 0.13
48 10 0.08
49 23 0.17
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGAGCCGATG
Found at i:98423834 original size:191 final size:190
Alignment explanation
Indices: 98423508--98423890 Score: 714
Period size: 191 Copynumber: 2.0 Consensus size: 190
98423498 ACCTGTAGCG
98423508 ACGTAAAAAATTCGTTTTGGTTTGGGGTCGCTAAATGTGGCAATTTATTAAACACTTGAAAACCA
1 ACGTAAAAAATTCGTTTTGGTTT-GGGTCGCTAAATGTGGCAATTTATTAAACACTTGAAAACCA
98423573 ACTTTCGATTTTATTAACAAAGGGAGTCGCCACCGATCCTTTTTTATAGGTGTGATCGGACACCT
65 ACTTTCGATTTTATTAACAAAGGGAGTCGCCACCGATCCTTTTTTATAGGTGTGATCGGACACCT
98423638 AATAAAATTATTTTAAAAACAAAAAAGAAGGCCAAATTTAGGTCTACGTGAAAGTCCAGAGAA
130 AATAAAATTATTTT-AAAAC-AAAAAGAAGGCCAAATTTAGGTCTACGTGAAAGTCCAGAGAA
* *
98423701 ACGTAAAAAATTCGTTTTGGTTT-GGTCGCTAAATGTGGCGATTTATTAAACATTTGAAAACCAA
1 ACGTAAAAAATTCGTTTTGGTTTGGGTCGCTAAATGTGGCAATTTATTAAACACTTGAAAACCAA
98423765 CTTTCGATTTTATTAACAAAGGGAGTCGCCACCGATCCTTTTTTATAGGTGTGATCGGACACCTA
66 CTTTCGATTTTATTAACAAAGGGAGTCGCCACCGATCCTTTTTTATAGGTGTGATCGGACACCTA
98423830 ATAAAATTATTTTAAAACAAAAAGAAGGCCAAATTTAGGTCTACGTGAAAGTCCAGAGAA
131 ATAAAATTATTTTAAAACAAAAAGAAGGCCAAATTTAGGTCTACGTGAAAGTCCAGAGAA
98423890 A
1 A
98423891 AATTGGGGTT
Statistics
Matches: 188, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
189 43 0.23
190 5 0.03
191 117 0.62
193 23 0.12
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (190 bp):
ACGTAAAAAATTCGTTTTGGTTTGGGTCGCTAAATGTGGCAATTTATTAAACACTTGAAAACCAA
CTTTCGATTTTATTAACAAAGGGAGTCGCCACCGATCCTTTTTTATAGGTGTGATCGGACACCTA
ATAAAATTATTTTAAAACAAAAAGAAGGCCAAATTTAGGTCTACGTGAAAGTCCAGAGAA
Found at i:98424366 original size:3 final size:3
Alignment explanation
Indices: 98424358--98424456 Score: 82
Period size: 3 Copynumber: 32.7 Consensus size: 3
98424348 GATTATTTGG
* *
98424358 TAA TAA TAA T-A TAA -AA TAA TAA TATG TACA TAA AAA TACA T-A TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TA-A
*
98424404 TATA TATA TGA T-A TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TA-A TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98424449 TAA TAA TA
1 TAA TAA TA
98424457 TCTACAATAA
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
2 10 0.12
3 56 0.68
4 16 0.20
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:98424608 original size:15 final size:15
Alignment explanation
Indices: 98424586--98424640 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
98424576 AAATATACAC
98424586 TAAT-ATAATAATAG
1 TAATAATAATAATAG
* *
98424600 TTATAATAATACTAG
1 TAATAATAATAATAG
* * *
98424615 CAATAGTAATAATTG
1 TAATAATAATAATAG
98424630 TAATAATAATA
1 TAATAATAATA
98424641 TATACACAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
14 3 0.10
15 28 0.90
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:98425245 original size:31 final size:30
Alignment explanation
Indices: 98425210--98425293 Score: 127
Period size: 30 Copynumber: 2.8 Consensus size: 30
98425200 GTTTTTTAGT
98425210 TTTTTTTTGGGTTAGGTTTTCTTTTTTCTTC
1 TTTTTTTTGGGTTAGGTTTT-TTTTTTCTTC
98425241 -TTTTTTTGGGTTAGGTTTTTCTTTTTCTTC
1 TTTTTTTTGGGTTAGGTTTTT-TTTTTCTTC
*
98425271 TTTTTTTTTGGTTA-GTTTTTTTT
1 TTTTTTTTGGGTTAGGTTTTTTTT
98425294 GGGGGCTTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
29 4 0.08
30 34 0.68
31 12 0.24
ACGTcount: A:0.04, C:0.07, G:0.15, T:0.74
Consensus pattern (30 bp):
TTTTTTTTGGGTTAGGTTTTTTTTTTCTTC
Found at i:98426159 original size:30 final size:29
Alignment explanation
Indices: 98426113--98426170 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
98426103 TTGAAAAACA
*
98426113 AAATTAAAGACTCAACTCAACTCTCGCAG
1 AAATTAAAAACTCAACTCAACTCTCGCAG
*
98426142 AAATTAAAAAGCTCAACTCACCTCTCGCA
1 AAATTAAAAA-CTCAACTCAACTCTCGCA
98426171 ATATGAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.21
Consensus pattern (29 bp):
AAATTAAAAACTCAACTCAACTCTCGCAG
Found at i:98426345 original size:86 final size:87
Alignment explanation
Indices: 98425894--98426353 Score: 319
Period size: 88 Copynumber: 5.4 Consensus size: 87
98425884 GTGATCCTGA
** * * * * *
98425894 GCTCAACTCATTTTTCGCAATATGAATTGACTCTCTAAAAACAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAACAGA-ATTGAAAAACAGAAATTGA
*
98425958 AAATAGCTCAGCACGTGAGCCAAG
64 AAATACCTCAGCACGTGAGCCAAG
* ** * **
98425982 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGA
1 GCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAACAGAA-TTGAAAAACAGAAATTGA
* * *
98426046 AAATACCTC-GATATGTGA-CTGAAG
64 AAATACCTCAG-CACGTGAGC-CAAG
* * * * ** * *
98426070 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATT-AAAGAC-TCAACT-CA
1 GCTCAACTCACATCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTGAAAAACAGAAATTGAA
* ** *** *
98426132 ACT--CTC-GCA-GAAATTAAAAA
65 AATACCTCAGCACGTGA-GCCAAG
* ***
98426152 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTGA-A-AA---AAAAACAGAAATTGAAA
1 GCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGAAATTGAAA
*
98426211 ATAGCTCAGCACGTGAGCCAAG
66 ATACCTCAGCACGTGAGCCAAG
* **
98426233 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGATTTTGAAA
1 GCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGAAATTGAAA
* *
98426298 ATACCTC-GACATGTGA-CCGAG
66 ATACCTCAG-CACGTGAGCCAAG
*
98426319 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTT
1 GCTCAACTCACATCTCGCAATATGAGTTGATTTTT
98426354 TTGAAAAATA
Statistics
Matches: 289, Mismatches: 62, Indels: 44
0.73 0.16 0.11
Matches are distributed among these distances:
76 5 0.02
77 3 0.01
78 5 0.02
79 1 0.00
80 4 0.01
81 41 0.14
82 40 0.14
83 5 0.02
84 2 0.01
85 3 0.01
86 40 0.14
87 46 0.16
88 88 0.30
89 6 0.02
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (87 bp):
GCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGAAATTGAAA
ATACCTCAGCACGTGAGCCAAG
Found at i:98426534 original size:76 final size:75
Alignment explanation
Indices: 98426278--98426631 Score: 407
Period size: 76 Copynumber: 4.7 Consensus size: 75
98426268 GAAAACAGAA
** * ** *
98426278 TTGAAAAACAGATTTTGAAAATACCTC-GACATGTGAC-CGAGGCTCAACTCACATCTCGCAATG
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CATGT--CTTGAGGCTCAACTCATTTCTCGCAATA
98426341 TGAGTTGATTTTT
63 TGAGTTGATTTTT
* * ** * * **
98426354 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTG--AAAATACCTCAGCATGT-CT-TGAGGCTCAACTCATTTCTCGCAAT
98426419 ATGAGTTGATTTTT
62 ATGAGTTGATTTTT
* *
98426433 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
98426498 GTTGATTTTTT
66 GTTGA-TTTTT
*
98426509 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
98426574 GTTGA--ATT
66 GTTGATTTTT
* *
98426582 TTG-AAAACAGAAATTG-AAAT-TCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
98426632 TGAACAGAAA
Statistics
Matches: 243, Mismatches: 29, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
70 27 0.11
71 4 0.02
72 13 0.05
73 5 0.02
75 30 0.12
76 86 0.35
77 15 0.06
78 13 0.05
79 50 0.21
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
GTTGATTTTT
Found at i:98426662 original size:49 final size:47
Alignment explanation
Indices: 98426587--98426680 Score: 161
Period size: 49 Copynumber: 2.0 Consensus size: 47
98426577 GAATTTTGAA
*
98426587 AACAGAAATTGAAATTCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTCTCAACGTGTCTTGAGGCTCAACTCATTTTG
98426634 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATT--CTCAACGTGTCTTGAGGCTCAACTCATTT
98426681 CTCGCAATAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 16 0.36
49 28 0.64
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (47 bp):
AACAGAAATTGAAATTCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:98426724 original size:72 final size:72
Alignment explanation
Indices: 98426634--98426856 Score: 290
Period size: 72 Copynumber: 3.0 Consensus size: 72
98426624 ACTCATTTTG
98426634 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
98426699 TTTTGAA
66 TTTTGAA
98426706 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT-AA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
98426770 TTTTTTTTGAA
66 ----TTTTGAA
* * * * ** *
98426781 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
98426845 TG-ATTTTGAA
62 TGAATTTTGAA
98426855 AA
1 AA
98426857 AGTAGAAATT
Statistics
Matches: 135, Mismatches: 7, Indels: 17
0.85 0.04 0.11
Matches are distributed among these distances:
71 2 0.01
72 62 0.46
73 1 0.01
74 8 0.06
75 8 0.06
76 20 0.15
78 33 0.24
79 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:98426920 original size:54 final size:55
Alignment explanation
Indices: 98426820--98426925 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
98426810 GAACCGAGGC
* *
98426820 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
98426874 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
98426926 TAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:98426934 original size:13 final size:13
Alignment explanation
Indices: 98426916--98426940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98426906 TGAACAACAT
98426916 AAATTGAAAATAG
1 AAATTGAAAATAG
98426929 AAATTGAAAATA
1 AAATTGAAAATA
98426941 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:98426986 original size:140 final size:140
Alignment explanation
Indices: 98426776--98427542 Score: 1457
Period size: 140 Copynumber: 5.5 Consensus size: 140
98426766 TTAATTTTTT
98426776 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
98426840 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
98426905 TTGAACAACATAAA
127 TTGAACAACGTAAA
*
98426919 TTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
98426984 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTT-A
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427048 ACAACGTAAA
131 ACAACGTAAA
98427058 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427123 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427188 ACAACGTAAA
131 ACAACGTAAA
98427198 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427263 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427328 ACAACGTAAA
131 ACAACGTAAA
98427338 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427403 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427468 ACAACGTAAA
131 ACAACGTAAA
98427478 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427543 TTGAAATTAA
Statistics
Matches: 617, Mismatches: 5, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
139 139 0.23
140 450 0.73
142 22 0.04
143 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:98427148 original size:279 final size:280
Alignment explanation
Indices: 98426776--98427542 Score: 1457
Period size: 279 Copynumber: 2.7 Consensus size: 280
98426766 TTAATTTTTT
98426776 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
98426840 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
* *
98426905 TTGAACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
127 TTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
98426970 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
192 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
98427035 GAGTTGATTCTT-AACAACGTAAA
257 GAGTTGATTCTTGAACAACGTAAA
98427058 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427123 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427188 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
131 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
98427253 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
196 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
98427318 TGATTCTTGAACAACGTAAA
261 TGATTCTTGAACAACGTAAA
98427338 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
98427403 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
98427468 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
131 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
98427533 GCAATATGAG
196 GCAATATGAG
98427543 TTGAAATTAA
Statistics
Matches: 480, Mismatches: 3, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
278 3 0.01
279 232 0.48
280 216 0.45
281 23 0.05
282 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (280 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
TGATTCTTGAACAACGTAAA
Found at i:98427199 original size:54 final size:54
Alignment explanation
Indices: 98427099--98427204 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
98427089 GACCTGAGGC
*
98427099 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
98427153 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
98427205 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:98427286 original size:419 final size:422
Alignment explanation
Indices: 98426776--98427542 Score: 1461
Period size: 419 Copynumber: 1.8 Consensus size: 422
98426766 TTAATTTTTT
98426776 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATAT
98426841 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
65 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
98426906 TGAACAACATAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
*
98426971 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATG
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
98427036 AGTTGATTCTT-AACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
260 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
98427100 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
325 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
98427165 TCGCAATATGAGTTGATTCTTGAACAACGTAAA
390 TCGCAATATGAGTTGATTCTTGAACAACGTAAA
98427198 TTGAAA-ACAGAAATTGAAAATACCTCAGC-GTG-ACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATAT
98427260 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
65 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
98427325 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
98427390 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
98427455 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
260 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
98427520 CAACTCACCTCTCGCAATATGAG
325 CAACTCACCTCTCGCAATATGAG
98427543 TTGAAATTAA
Statistics
Matches: 340, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
418 3 0.01
419 232 0.68
420 76 0.22
421 23 0.07
422 6 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (422 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATG
AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
GAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
GTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
AACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT
CGCAATATGAGTTGATTCTTGAACAACGTAAA
Found at i:98427339 original size:54 final size:54
Alignment explanation
Indices: 98427239--98427344 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
98427229 GACCTGAGGC
*
98427239 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
98427293 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
98427345 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:98427479 original size:54 final size:54
Alignment explanation
Indices: 98427379--98427484 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
98427369 GACCTGAGGC
*
98427379 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
98427433 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
98427485 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:98427601 original size:71 final size:71
Alignment explanation
Indices: 98427475--98427639 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
98427465 TGAACAACGT
* * * *
98427475 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
98427540 GAGTTG
66 GAGTTG
98427546 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
98427610 TGAGTTG
65 TGAGTTG
**
98427617 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
98427640 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
70 4 0.05
71 53 0.62
72 29 0.34
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:98436163 original size:3 final size:3
Alignment explanation
Indices: 98436155--98436221 Score: 59
Period size: 3 Copynumber: 21.7 Consensus size: 3
98436145 ATCTATTTGG
*
98436155 TAA TAA TAA T-A TAA -AA TAA TAA TATG TAA TACA T-A TATA TATA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A TAA TA-A TA-A TA-A
98436202 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
98436222 TCTACAATAA
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
2 6 0.11
3 35 0.62
4 15 0.27
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:98437035 original size:36 final size:34
Alignment explanation
Indices: 98436995--98437099 Score: 111
Period size: 36 Copynumber: 3.0 Consensus size: 34
98436985 AGGTGGCTAG
*
98436995 TTTTTTTTAGTTTTTTTTTTTGGGTTAGGTTTTTC
1 TTTTTTTT-TTTTTTTTTTTTGGGTTAGGTTTTTC
****
98437030 TTTTTTCTTCTTTTTTTTGGGGGGGTTAGGTTTTTC
1 TTTTTT-TT-TTTTTTTTTTTTGGGTTAGGTTTTTC
* *
98437066 TTTTTCTTCTTTTTTTTTTTTGGGTTAGTTTTTT
1 TTTTT-TTTTTTTTTTTTTTTGGGTTAGGTTTTT
98437100 TGGGGGGGCT
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
35 26 0.46
36 29 0.52
37 1 0.02
ACGTcount: A:0.04, C:0.06, G:0.18, T:0.72
Consensus pattern (34 bp):
TTTTTTTTTTTTTTTTTTTTGGGTTAGGTTTTTC
Found at i:98437100 original size:36 final size:36
Alignment explanation
Indices: 98437005--98437099 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 36
98436995 TTTTTTTTAG
98437005 TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTCT
1 TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTCT
****
98437041 TTTTTTTGGGGGGGTTAGGTTTTTC-TTTTTCTTCT
1 TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTCT
*
98437076 TTTTTTTTTTTGGGTTAGTTTTTT
1 TTTTTTTTTTTGGGTTAGGTTTTT
98437100 TGGGGGGGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 29 0.58
36 21 0.42
ACGTcount: A:0.03, C:0.06, G:0.19, T:0.72
Consensus pattern (36 bp):
TTTTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTCT
Found at i:98442083 original size:19 final size:19
Alignment explanation
Indices: 98442060--98442114 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 19
98442050 ATTTTTCCTA
*
98442060 ATTTTTAATAAATTTTAA-
1 ATTTTTTATAAATTTTAAT
*
98442078 ATTTTTTATTAATATTTAAT
1 ATTTTTTATAAAT-TTTAAT
*
98442098 ATTTTTTATAACTTTTA
1 ATTTTTTATAAATTTTA
98442115 TTGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 11 0.35
19 9 0.29
20 11 0.35
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTTTATAAATTTTAAT
Found at i:98442094 original size:20 final size:19
Alignment explanation
Indices: 98442061--98442106 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
98442051 TTTTTCCTAA
*
98442061 TTTTTAATAAATTTTAA-AT
1 TTTTTATTAAA-TTTAATAT
98442080 TTTTTATTAATATTTAATAT
1 TTTTTATTAA-ATTTAATAT
98442100 TTTTTAT
1 TTTTTAT
98442107 AACTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTATTAAATTTAATAT
Found at i:98443623 original size:2 final size:2
Alignment explanation
Indices: 98443616--98443652 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
98443606 GTATTTTAAA
*
98443616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98443653 CAATAGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:98443746 original size:2 final size:2
Alignment explanation
Indices: 98443739--98443788 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
98443729 GGCATTTAAA
* * *
98443739 AT AT AT AT AT AT AT AC AT A- AT AT AT AT A- AA AT AC AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98443778 AT AT AT AT AT A
1 AT AT AT AT AT A
98443789 CGTATTAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
1 3 0.08
2 37 0.93
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:98443771 original size:11 final size:11
Alignment explanation
Indices: 98443745--98443788 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
98443735 TAAAATATAT
98443745 ATATATATACATA
1 ATATATATA-A-A
98443758 ATATATATAAA
1 ATATATATAAA
* *
98443769 ATACATATAAT
1 ATATATATAAA
98443780 ATATATATA
1 ATATATATA
98443789 CGTATTAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 18 0.64
12 1 0.04
13 9 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATATATAAA
Found at i:98444545 original size:17 final size:17
Alignment explanation
Indices: 98444525--98444563 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
98444515 AAATAAAATA
*
98444525 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
98444542 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
98444559 AAAAT
1 AAAAT
98444564 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:98451879 original size:6 final size:6
Alignment explanation
Indices: 98451868--98451912 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
98451858 CAAAGCTTTT
* * *
98451868 ACTCAC ACTCAC ACTCAC GCTCAC GCTCAC GCTCAC ACTCAC ACT
1 ACTCAC ACTCAC ACTCAC ACTCAC ACTCAC ACTCAC ACTCAC ACT
98451913 TGTTTAAGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.27, C:0.49, G:0.07, T:0.18
Consensus pattern (6 bp):
ACTCAC
Found at i:98453367 original size:22 final size:22
Alignment explanation
Indices: 98453327--98453368 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
98453317 TGGCCACCCA
*
98453327 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
98453349 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
98453369 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:98453448 original size:21 final size:22
Alignment explanation
Indices: 98453431--98453515 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
98453421 TTAGAGGGGG
*
98453431 TTTTTGGTTTTTTGGAGGAGGA
1 TTTTTGGTTTTTTGGAGGAGGT
* **
98453453 TTGTTCTTTGTTTTGGAGGAGGTTT
1 TTTTTGGTT-TTTTGGAGGAGG--T
* * *
98453478 TTTTTGTTTTTTTGGAGGTGTT
1 TTTTTGGTTTTTTGGAGGAGGT
*
98453500 TTTTTGTTTTTTTGGA
1 TTTTTGGTTTTTTGGA
98453516 AAGAAGGTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
22 23 0.44
23 12 0.23
24 10 0.19
25 7 0.13
ACGTcount: A:0.08, C:0.01, G:0.29, T:0.61
Consensus pattern (22 bp):
TTTTTGGTTTTTTGGAGGAGGT
Found at i:98453470 original size:23 final size:21
Alignment explanation
Indices: 98453414--98453487 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 21
98453404 CCATTCAAGA
* *
98453414 CTTTGTTTTAGAGGGGGTTTT
1 CTTTGTTTTGGAGGAGGTTTT
98453435 -TGGTT-TTTTGGAGGAGGATTGTT
1 CT--TTGTTTTGGAGGAGG-TT-TT
98453458 CTTTGTTTTGGAGGAGGTTTT
1 CTTTGTTTTGGAGGAGGTTTT
*
98453479 TTTTGTTTT
1 CTTTGTTTT
98453488 TTTGGAGGTG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
20 1 0.02
21 20 0.45
22 8 0.18
23 14 0.32
24 1 0.02
ACGTcount: A:0.09, C:0.03, G:0.32, T:0.55
Consensus pattern (21 bp):
CTTTGTTTTGGAGGAGGTTTT
Found at i:98453489 original size:23 final size:23
Alignment explanation
Indices: 98453431--98453540 Score: 84
Period size: 23 Copynumber: 4.7 Consensus size: 23
98453421 TTAGAGGGGG
*
98453431 TTTTTGGTTTTTTGGAGGAGGATT
1 TTTTTTGTTTTTTGGAGGAGG-TT
*
98453455 GTTCTTTG--TTTTGGAGGAGGTT
1 -TTTTTTGTTTTTTGGAGGAGGTT
*
98453477 TTTTTTGTTTTTT--TGGAGGTGT
1 TTTTTTGTTTTTTGGAGGAGGT-T
*
98453499 TTTTTTGTTTTTTTGGAAAGAAGGTT
1 TTTTTTG-TTTTTTGG--AGGAGGTT
* *
98453525 GTTTTTGTTTCTTGGA
1 TTTTTTGTTTTTTGGA
98453541 AAGGCTAGTT
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
21 12 0.17
22 10 0.14
23 23 0.33
25 12 0.17
26 7 0.10
27 5 0.07
ACGTcount: A:0.11, C:0.02, G:0.29, T:0.58
Consensus pattern (23 bp):
TTTTTTGTTTTTTGGAGGAGGTT
Found at i:98453501 original size:22 final size:21
Alignment explanation
Indices: 98453470--98453515 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 21
98453460 TTGTTTTGGA
98453470 GGAGGTTTTTTTTGTTTTTTT
1 GGAGGTTTTTTTTGTTTTTTT
98453491 GGAGGTGTTTTTTTGTTTTTTT
1 GGAGGT-TTTTTTTGTTTTTTT
98453513 GGA
1 GGA
98453516 AAGAAGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.07, C:0.00, G:0.28, T:0.65
Consensus pattern (21 bp):
GGAGGTTTTTTTTGTTTTTTT
Found at i:98453857 original size:3 final size:3
Alignment explanation
Indices: 98453843--98453926 Score: 66
Period size: 3 Copynumber: 27.3 Consensus size: 3
98453833 GAGCTTTGTT
* *
98453843 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
98453887 TTC TCA TGTA TATA TTA TTA TT- TATA TTA TTA TATA TTA T
1 TTA TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA T-TA TTA T
98453927 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
2 4 0.06
3 51 0.78
4 10 0.15
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:98454287 original size:2 final size:2
Alignment explanation
Indices: 98454282--98454313 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
98454272 GTATTTCTAT
98454282 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98454314 GTATTATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:98456772 original size:19 final size:19
Alignment explanation
Indices: 98456750--98456796 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
98456740 CTTCCTTTCT
98456750 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
98456769 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
98456788 TTTGCATTA
1 TTTGCATTA
98456797 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:98459649 original size:1 final size:1
Alignment explanation
Indices: 98459597--98459637 Score: 64
Period size: 1 Copynumber: 41.0 Consensus size: 1
98459587 AGGCAAAGGC
* *
98459597 AAAAAAAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
98459638 TTCTAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.95, C:0.05, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:98459649 original size:22 final size:22
Alignment explanation
Indices: 98459596--98459637 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
98459586 AAGGCAAAGG
98459596 CAAAAAAAAAAAAAAAAAAACA
1 CAAAAAAAAAAAAAAAAAAACA
98459618 CAAAAAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAAAAAA
98459638 TTCTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (22 bp):
CAAAAAAAAAAAAAAAAAAACA
Found at i:98460878 original size:66 final size:66
Alignment explanation
Indices: 98460778--98460904 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
98460768 CATTCATATA
*
98460778 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
98460843 C
66 C
*
98460844 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
98460905 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:98461120 original size:86 final size:85
Alignment explanation
Indices: 98460968--98461605 Score: 436
Period size: 86 Copynumber: 7.3 Consensus size: 85
98460958 ATTCACAAGC
* * * *
98460968 CTTAAGCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAG
*
98461033 GGAAACAGATCGAAGACGAAGGGT
63 GGAAACAGATCGAAGACGAA-GAT
* * * * *
98461057 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGGG
1 CTT-AACCCCTAAGCAGTAGGGAAACAGACCGAAGTTGCAGATCTTAACCCCCTAAGCAGTAGGG
*
98461121 AAACAGATCGAAGATGAAGAT
65 AAACAGATCGAAGACGAAGAT
* * ** *
98461142 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGTAGTAG
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGACCGAAGTTGCA-GATC-TTAACCCCCTAAGCAGTAG
* * * * *
98461206 GGTAACA-AGCCAAATTTAC-AA-AC
63 GGAAACAGA-TCGAA--GACGAAGAT
* * * * * *
98461229 CTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGG
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAGG
*
98461294 GAAACAGATCGAAGATGAAGAT
64 GAAACAGATCGAAGACGAAGAT
* * * *
98461316 CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATAGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGTTGCAGA-TC-TTAACCCCCTAAGCAGTAGG
* * * * *
98461380 GTAACA-AGCTAAATTTAC-AAG-C
64 GAAACAGATC-GAA--GACGAAGAT
* * * *
98461402 CTTAACCCCTAAGCAGTAGGGCAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAGG
* * * **
98461467 GAAACAGATCAAAGATGATGGG
64 GAAACAGATCGAAGACGAAGAT
* * * * *
98461489 CTTTAACCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACA-AGCCTTAAACCCCTAAGCAGTAG
1 C-TTAACCCCTAAGCAGTAGGGAAACAGA-CCGAAGTTGCAGA-TCTTAACCCCCTAAGCAGTAG
* * * * **
98461552 GGTAACTG-GCTAAAGATTTACAGAT
63 GGAAACAGATC-GAAGA-CGA-AGAT
98461577 CTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGA
98461606 TAAAAAATGA
Statistics
Matches: 430, Mismatches: 86, Indels: 66
0.74 0.15 0.11
Matches are distributed among these distances:
84 4 0.01
85 38 0.09
86 168 0.39
87 125 0.29
88 61 0.14
89 32 0.07
90 2 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (85 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGTTGCAGATCTTAACCCCCTAAGCAGTAGGGA
AACAGATCGAAGACGAAGAT
Found at i:98461207 original size:129 final size:130
Alignment explanation
Indices: 98460956--98461428 Score: 509
Period size: 129 Copynumber: 3.6 Consensus size: 130
98460946 TAGAATCAGT
* *
98460956 GAATTCACAAGCCTTAAGCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAACCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * *
98461021 CCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAA-TCGGTAGGGTAACAG
65 CCTAAGCAGTAGGGAAACAGATCGAAGATGAAGGG-CTTTAACCCCTAAGT-AGTAGGGTAACAG
98461085 ACC
128 ACC
* * * * * * *
98461088 GAA-TTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAACC
1 GAATTTACAAACCTTAAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAACC
*
98461149 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACA-
64 CCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGGGCTTTAA-CCCCTAAGTAGTAGGGTAACAG
98461213 AGCC
128 A-CC
* * *
98461217 AAATTTACAAACCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCC
1 GAATTTACAAACCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
** * * *
98461282 CTAAGCAGTAGGGAAACAGATCGAAGATGAAGATC-TTAACCCCTAAGCAGTAGGGAAACAGATC
66 CTAAGCAGTAGGGAAACAGATCGAAGATGAAGGGCTTTAACCCCTAAGTAGTAGGGTAACAGACC
* * * ** * * *
98461346 GAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCT-AA-ATTTACA-AGCCTTAA-
1 GAA-TTTACAAACCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTTAAC
*
98461407 CCCCTAAGCAGTAGGGCAACAG
63 CCCCTAAGCAGTAGGGAAACAG
98461429 GCTGAAGATT
Statistics
Matches: 287, Mismatches: 41, Indels: 30
0.80 0.11 0.08
Matches are distributed among these distances:
128 27 0.09
129 124 0.43
130 35 0.12
131 98 0.34
132 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (130 bp):
GAATTTACAAACCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAGATCGAAGATGAAGGGCTTTAACCCCTAAGTAGTAGGGTAACAGACC
Found at i:98461233 original size:87 final size:86
Alignment explanation
Indices: 98461142--98461822 Score: 438
Period size: 87 Copynumber: 7.8 Consensus size: 86
98461132 AGATGAAGAT
** *
98461142 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGTAGTAGG
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATCAGCTTTAACCCCCTAAGCAGTAGG
*
98461207 GTAACAAGCCAAATTTACAAAC
65 GTAACAAGCCAAATTTACAGAC
* * * * * *
98461229 CTTAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGATCTTATCTCCCTAAGCAGTA
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAT-CAGCT-TTAACCCCCTAAGCAGTA
* * * * *
98461292 GGGAAACAGATCGAAGA-TGA-AGAT
63 GGGTAACA-AGCCAA-ATTTACAGAC
98461316 CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGAT-AGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATCA-GCTTTAACCCCCTAAGCAGTAGG
*
98461380 GTAACAAGCTAAATTTACA-AGC
65 GTAACAAGCCAAATTTACAGA-C
* * * *
98461402 CTTAACCCCTAAGCAGTAGGGCAACAG-GCTGAAGAT-TTACAGATCTTAACCCCCTAAGCAGTA
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAT-CAGCT-TTAACCCCCTAAGCAGTA
* * * * ** *
98461465 GGGAAAC-AGATCAAAGATGATGGGC
63 GGGTAACAAG-CCAAA-TTTACAGAC
* * * * * * *
98461490 TTTAACCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTA-CAAGCCTTAAACCCCTAAGCAGTAG
1 CTTAACCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGATC-AGCTTTAACCCCCTAAGCAGTAG
** * *
98461552 GGTAACTGGCTAAAGATTTACAGAT
64 GGTAACAAGC-CAA-ATTTACAGAC
** * ** *
98461577 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAACCCCTTAAGCAGTAGG
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATCAGCTTTAACCCCCTAAGCAGTAGG
* *
98461642 GTAACAAGCCGAATTTACAAAC
65 GTAACAAGCCAAATTTACAGAC
* * * * ** * *
98461664 CTTAAACCCCTAAGCAGTAGGGTAACTG-GCTGAAGAT-TTACAAATCTTAA-CCCCTAAACTAA
1 CTT-AACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGAT-CAGCT-TTAACCCCCTAAGC-AG
* *** *
98461726 TAGGGTAACAGGTTGAATTTACAGAT
61 TAGGGTAACAAGCCAAATTTACAGAC
* * * ** * * *
98461752 CTTAACTCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGG
1 CTTAAC-CCCTAAGCAGTAGGGAAACAGATCGAAGATGATCAGCTTTAACCCCCTAAGCAGTAGG
98461817 GTAACA
65 GTAACA
98461823 GGCTGGAAAT
Statistics
Matches: 448, Mismatches: 108, Indels: 76
0.71 0.17 0.12
Matches are distributed among these distances:
84 1 0.00
85 11 0.02
86 115 0.26
87 165 0.37
88 122 0.27
89 34 0.08
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (86 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATCAGCTTTAACCCCCTAAGCAGTAGGG
TAACAAGCCAAATTTACAGAC
Found at i:98461347 original size:173 final size:173
Alignment explanation
Indices: 98461061--98461604 Score: 729
Period size: 173 Copynumber: 3.1 Consensus size: 173
98461051 AAGGGTCTTA
* * * * *
98461061 AACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAGGGAA
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGGAA
*
98461123 ACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTT
66 ACAGATCGAAGATGAAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTT
*
98461188 TAACCCCCTAAGTAGTAGGGTAACAAGCCAAATTTACAAACCTT
130 TAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTT
98461232 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGGAA
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGGAA
98461297 ACAGATCGAAGATGAAGATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTT
66 ACAGATCGAAGATGAAGATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTT
* *
98461362 AACCCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAAGCCTT
131 AACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTT
* * *
98461405 AACCCCTAAGCAGTAGGGCAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAA
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGGAA
* * ** * * * * * * *
98461470 ACAGATCAAAGATGATGGGCTTTAACCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAGCC
66 ACAGATCGAAGATGAAGATC-TTAACCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGATAGGCT
* ** * * *
98461533 TTAAACCCCTAAGCAGTAGGGTAACTGGCTAAAGATTTACAGATCTT
129 TTAACCCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACAAACCTT
*
98461580 AACCCCCTAAGCAGTAGGGAAACAG
1 AA-CCCCTAAGCAGTAGGGTAACAG
98461605 ATAAAAAATG
Statistics
Matches: 334, Mismatches: 31, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
171 24 0.07
172 1 0.00
173 191 0.57
174 85 0.25
175 12 0.04
176 21 0.06
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (173 bp):
AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGGAA
ACAGATCGAAGATGAAGATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCTTT
AACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTT
Found at i:98461369 original size:131 final size:129
Alignment explanation
Indices: 98460969--98461685 Score: 647
Period size: 131 Copynumber: 5.5 Consensus size: 129
98460959 TTCACAAGCC
* * *
98460969 TTAAGCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAA-ATTTACAGACCTTAA-CCCCTAAGCAGTAGG
* * * * * * * * * *
98461034 GAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTG-CA-G
64 GAAACAGATCGAAGATGAA-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAATGATAGG
*
98461097 AT
128 CT
* * * * * *
98461099 CTTATCTCCCTAAGCAGTAGGGAAAC-AGATCGAAGA-TGA-AGATCTTAACCCCCTAAGCAGTA
1 -TTAACCCCCTAAGCAGTAGGGTAACAAGCT-GAA-ATTTACAGACCTTAA-CCCCTAAGCAGTA
* ** * * * * * *
98461161 GGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGTAGTAGGGTAACA-AGCCAAATTTAC
62 GGGAAACAGATCGAAGATGAAGATC-TTAACCCCCTAAGCAGTAGGGAAACAGA-TCAAAATGAT
** *
98461225 AAACC
125 AGGCT
* * *
98461230 TTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAA-ATTTACAGACCTTAAC-CCCTAAGCAGTAGG
*
98461294 GAAACAGATCGAAGATGAAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGG
64 GAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAAATGATAGG
98461358 CT
128 CT
98461360 TTAACCCCCTAAGCAGTAGGGTAACAAGCT-AAATTTACA-AGCCTTAACCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAGA-CCTTAACCCCTAAGCAGTAGGG
* * * *
98461423 CAACAG-GCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATG
65 AAACAGATC-GAAGA-TGA-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAA-ATGATA
98461487 GGCT
126 GGCT
*
98461491 TTAA-CCCCTAAGCAGTAGGGTAACAAGCCG-AATTTACA-AGCCTTAAACCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAGA-CCTT-AACCCCTAAGCAGTAGG
* * * * * *
98461553 GTAACTG-GCTAAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGAT
64 GAAACAGATC-GAAGA-TGA-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT-CAAAATGAT
*
98461617 GGGCT
125 AGGCT
* * *
98461622 TTAACCCCTTAAGCAGTAGGGTAACAAGCCG-AATTTACAAACCTTAAACCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAGACCTT-AACCCCTAAGCAGTAGGG
98461686 TAACTGGCTG
Statistics
Matches: 510, Mismatches: 53, Indels: 45
0.84 0.09 0.07
Matches are distributed among these distances:
127 1 0.00
128 30 0.06
129 127 0.25
130 80 0.16
131 212 0.42
132 59 0.12
133 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (129 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAATTTACAGACCTTAACCCCTAAGCAGTAGGGA
AACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAATGATAGGCT
Found at i:98461674 original size:175 final size:175
Alignment explanation
Indices: 98461493--98461822 Score: 425
Period size: 175 Copynumber: 1.9 Consensus size: 175
98461483 GATGGGCTTT
* * *
98461493 AACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAGCCTTAAACCCCTAAGC-AGTAGGGT
1 AACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAACCTT-AACCCCTAAACTAATAGGGT
*
98461555 AACTGGCTAAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
65 AACAGG-TAAA-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
*
98461620 -CTTTAACCCCTTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTA
128 CCTTAAACCCC-TAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTA
** * *
98461668 AACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAAATCTTAACCCCTAAACTAATAGGGTA
1 AACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAACCTTAACCCCTAAACTAATAGGGTA
** * * * * ** *
98461733 ACAGGTTGAATTTACAGATCTTAACTCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCT
66 ACAGGTAAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCCT
*
98461798 TAAACCCCTAAGTAGTAGGGTAACA
131 TAAACCCCTAAGCAGTAGGGTAACA
98461823 GGCTGGAAAT
Statistics
Matches: 132, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
175 87 0.66
176 22 0.17
177 23 0.17
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (175 bp):
AACCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAAACCTTAACCCCTAAACTAATAGGGTA
ACAGGTAAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCCT
TAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTA
Found at i:98461720 original size:131 final size:130
Alignment explanation
Indices: 98461230--98461717 Score: 687
Period size: 131 Copynumber: 3.7 Consensus size: 130
98461220 TTTACAAACC
* * * * *
98461230 TTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCTCCCTAAGCAGTAGGG
1 TTAACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAACCTTAAC-CCCTAAGCAGTAGGG
* * * * * *
98461295 AAAC-AGATCGAAGA-TGA-AGATCTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATA
63 TAACTGGCT-GAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATG
98461356 GGCT
127 GGCT
** * *
98461360 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAAGCCTTAACCCCTAAGCAGTAGGGCA
1 TTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCTAAGCAGTAGGGTA
*
98461425 ACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGC
65 ACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGC
98461490 T
130 T
*
98461491 TTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTA
1 TTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTT-AACCCCTAAGCAGTAGGGTA
* * *
98461556 ACTGGCTAAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGC
65 ACTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGC
98461621 T
130 T
98461622 TTAACCCCTTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGT
1 TTAACCCC-TAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTT-AACCCCTAAGCAGTAGGGT
*
98461687 AACTGGCTGAAGATTTACAAATCTTAACCCC
64 AACTGGCTGAAGATTTACAGATCTTAACCCC
98461718 TAAACTAATA
Statistics
Matches: 329, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
128 23 0.07
129 16 0.05
130 52 0.16
131 154 0.47
132 84 0.26
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (130 bp):
TTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCTAAGCAGTAGGGTAA
CTGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCT
Found at i:98461754 original size:43 final size:42
Alignment explanation
Indices: 98461622--98461757 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 42
98461612 ATGATGGGCT
* * * * *
98461622 TTAACCCCTTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
1 TTAACCCC-TAAACAATAGGGTAACAGGCTGAATTTACAAATC
* * *
98461665 TTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAAATC
1 TT-AACCCCTAAACAATAGGGTAACAGGCTG-A-ATTTACAAATC
* *
98461710 TTAACCCCTAAACTAATAGGGTAACAGGTTGAATTTACAGATC
1 TTAACCCCTAAAC-AATAGGGTAACAGGCTGAATTTACAAATC
98461753 TTAAC
1 TTAAC
98461758 TCCTTAAGCA
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
43 36 0.45
44 18 0.22
45 26 0.32
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (42 bp):
TTAACCCCTAAACAATAGGGTAACAGGCTGAATTTACAAATC
Found at i:98461958 original size:68 final size:67
Alignment explanation
Indices: 98461841--98462039 Score: 283
Period size: 68 Copynumber: 2.9 Consensus size: 67
98461831 ATTACAAATT
*
98461841 TCTTTTTCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-A
1 TCTTTTTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA
*
98461905 GGA
66 -AA
* * *
98461908 TCTTTTCTTCCTGAAATGGCGTTGGAGCGACTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTT-TTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
98461973 AAA
65 AAA
* * * *
98461976 CCTCTTATTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCT-TTTTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
98462040 TGGAAGAAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
67 6 0.05
68 108 0.92
69 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (67 bp):
TCTTTTTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA
AA
Found at i:98462199 original size:44 final size:44
Alignment explanation
Indices: 98462151--98462527 Score: 361
Period size: 44 Copynumber: 8.6 Consensus size: 44
98462141 GATTTCAGCA
98462151 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
* * * * * *
98462195 TGGCATCCTTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
* * * * * ***
98462239 TGACATTCCTGTGCTTATAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACAGCAG-ATT
* *
98462283 TGGCATCTCTGTGCTTATAGGGAACAAGTTGAAAACAGTAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
* * * * *
98462327 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
* * * * * * ***
98462371 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACAGCAG-ATT
* *
98462415 TGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
*
98462459 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
98462503 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
98462528 GGATCGAAGA
Statistics
Matches: 266, Mismatches: 55, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.01
43 10 0.04
44 240 0.90
45 12 0.05
46 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
Found at i:98462428 original size:176 final size:175
Alignment explanation
Indices: 98462151--98462586 Score: 544
Period size: 176 Copynumber: 2.5 Consensus size: 175
98462141 GATTTCAGCA
* * * * * * *
98462151 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCA-TCCTTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCC-TGTGCTTACAG
* * * * **
98462215 GGAA-CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTAT-AGTGAAGC-AGATCAAAGATT
65 TGAAGCAGATCAAAGATAGCAGA-CTGACATCCCTGTGCTTATAAG-GAA-CAAGATCAAA-ACA
*
98462277 TCAGCA-TGGCATCTCTGTGCTTATAGGGAACAAGTTGAAAACAGT-AGATT
126 TCAG-ATTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA-TCAGATT
98462327 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
** * * *
98462392 GAAGCAGATCAAAGATTTCAG-CATGGCATCCCTGTGCTTATAAGGAACAAGTTGAAAACATCAG
66 GAAGCAGATCAAAGATAGCAGAC-TGACATCCCTGTGCTTATAAGGAACAAGATCAAAACATCAG
98462456 ATTTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
130 A-TTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
** *
98462503 TGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
98462568 GAAGCAGATCAAAGATAGC
66 GAAGCAGATCAAAGATAGC
98462587 GGATATCGCC
Statistics
Matches: 228, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
174 1 0.00
175 8 0.04
176 201 0.88
177 18 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (175 bp):
TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
GAAGCAGATCAAAGATAGCAGACTGACATCCCTGTGCTTATAAGGAACAAGATCAAAACATCAGA
TTGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
Found at i:98462519 original size:132 final size:132
Alignment explanation
Indices: 98462092--98462485 Score: 718
Period size: 132 Copynumber: 3.0 Consensus size: 132
98462082 AGGAGCAGAC
*
98462092 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
* *
98462157 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCTTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
98462222 AT
131 AT
*
98462224 CGAAGATAGCAGATCTGACATTCCTGTGCTTATAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
98462289 CTCTGTGCTTATAGGGAACAAGTTGAAAACAGT-AGATTTGGCATCCCTGTGCTTATAGGGAACA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACA-TCAGATTTGGCATCCCTGTGCTTATAGGGAACA
98462353 AAT
130 AAT
98462356 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
98462421 CCCTGTGCTTATAAGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
98462486 GTTGAAAACA
Statistics
Matches: 252, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
131 1 0.00
132 251 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
AT
Found at i:98462558 original size:44 final size:44
Alignment explanation
Indices: 98462092--98462586 Score: 349
Period size: 44 Copynumber: 11.2 Consensus size: 44
98462082 AGGAGCAGAC
* * * *
98462092 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAA-CAAAT
** * *
98462137 CGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACAAGT
1 CGAAGATAGCAGATC-TGGCATTCCTGTGCTTATAGGGAACAAAT
* * * *
98462180 TGAAAACAGCAGATTTGGCA-TCCTTGTGCTTATAGGGAACAAAT
1 CGAAGATAGCAGATCTGGCATTCC-TGTGCTTATAGGGAACAAAT
* * *
98462224 CGAAGATAGCAGATCTGACATTCCTGTGCTTATAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAA-CAAAT
* ** *
98462269 CAAAGATTTCAG--CATGGCA-TCTCTGTGCTTATAGGGAACAAGT
1 CGAAGATAGCAGATC-TGGCATTC-CTGTGCTTATAGGGAACAAAT
* * * * * *
98462312 TGAAAACAGTAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAACAAAT
* * * *
98462356 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAA-CAAAT
* ** * * *
98462401 CAAAGATTTCAG--CATGGCATCCCTGTGCTTATAAGGAACAAGT
1 CGAAGATAGCAGATC-TGGCATTCCTGTGCTTATAGGGAACAAAT
* * * * * * *
98462444 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAACAAAT
* * * * * * **
98462488 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAACAAAT
* * * * *
98462532 CGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAA-CAAAT
*
98462577 CAAAGATAGC
1 CGAAGATAGC
98462587 GGATATCGCC
Statistics
Matches: 352, Mismatches: 82, Indels: 32
0.76 0.18 0.07
Matches are distributed among these distances:
43 35 0.10
44 264 0.75
45 53 0.15
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
CGAAGATAGCAGATCTGGCATTCCTGTGCTTATAGGGAACAAAT
Found at i:98463094 original size:23 final size:23
Alignment explanation
Indices: 98463036--98463143 Score: 89
Period size: 23 Copynumber: 4.7 Consensus size: 23
98463026 AGATGGGGGG
*
98463036 TTTTTGGTTTTTTGGAGGAGGATT
1 TTTTTTGTTTTTTGGAGGAGG-TT
*
98463060 GTTCTTTG--TTTTGGAGGAGGTT
1 -TTTTTTGTTTTTTGGAGGAGGTT
* *
98463082 TTTTTTGTTTTTTTGAGG-TG-T
1 TTTTTTGTTTTTTGGAGGAGGTT
*
98463103 TTTTTTGTTTTTTGGAAAGAAGGTT
1 TTTTTTGTTTTTTGG--AGGAGGTT
* *
98463128 GTTTTTGTTTCTTGGA
1 TTTTTTGTTTTTTGGA
98463144 AAGGCTAGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
21 21 0.31
22 3 0.04
23 23 0.34
24 1 0.01
25 19 0.28
ACGTcount: A:0.11, C:0.02, G:0.29, T:0.58
Consensus pattern (23 bp):
TTTTTTGTTTTTTGGAGGAGGTT
Found at i:98463105 original size:20 final size:21
Alignment explanation
Indices: 98463076--98463115 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
98463066 TGTTTTGGAG
98463076 GAGGT-TTTTTTTGTTTTTTT
1 GAGGTGTTTTTTTGTTTTTTT
98463096 GAGGTGTTTTTTTGTTTTTT
1 GAGGTGTTTTTTTGTTTTTT
98463116 GGAAAGAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.05, C:0.00, G:0.23, T:0.72
Consensus pattern (21 bp):
GAGGTGTTTTTTTGTTTTTTT
Found at i:98463457 original size:3 final size:3
Alignment explanation
Indices: 98463443--98463549 Score: 114
Period size: 3 Copynumber: 35.3 Consensus size: 3
98463433 GAGCTTTGTT
* *
98463443 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
98463487 TTA TTA TTA TTA TTA TTA TTA TTA TT- TCA TGTA TATA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA
98463532 TATA TTA TTA TATA TTA T
1 T-TA TTA TTA T-TA TTA T
98463550 ATATGCCCTC
Statistics
Matches: 89, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
2 5 0.06
3 74 0.83
4 10 0.11
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:98463978 original size:24 final size:24
Alignment explanation
Indices: 98463923--98463971 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
98463913 TACATATATA
98463923 TATATTTATATATAGTATTATTGT
1 TATATTTATATATAGTATTATTGT
98463947 TATATTTATATATAGTATTATTGT
1 TATATTTATATATAGTATTATTGT
98463971 T
1 T
98463972 TACTTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (24 bp):
TATATTTATATATAGTATTATTGT
Found at i:98464005 original size:126 final size:125
Alignment explanation
Indices: 98463748--98463982 Score: 275
Period size: 123 Copynumber: 1.9 Consensus size: 125
98463738 TTATTTTTGC
* * *
98463748 TATCACTATTACTATTATATATTAGTGTATATTTTTATTTATATATATATATATTTATATATAGT
1 TATCATTATTACTATTATATAGTAGTGTATATTTCTATTTATATATATATATATTTATATATAGT
* * * * *
98463813 ATTGTTTTTTATTACTTTAATTTAATATTTTTATTATATTTGCTTTTTGTATTTCTATAT
66 ATTGATTGTTATTACTTTAATATAATATTATTATTATATTTACTTTTTGTATTTCTATAT
* *
98463873 T-T-ATTATTATTATTATATAGTAGTGTGTATTTCTATTATATACATATATATATATTTATATAT
1 TATCATTATTACTATTATATAGTAGTGTATATTTCTATT-TAT--ATATATATATATTTATATAT
* *
98463936 AGTATT-ATTGTTA-TA-TTTATATATAGTATTATTGTT-TACTTTACTTT
63 AGTATTGATTGTTATTACTTTA-ATATAATATTATTATTATA-TTTACTTT
98463983 AATATTATTC
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
123 36 0.39
124 25 0.27
125 6 0.06
126 26 0.28
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (125 bp):
TATCATTATTACTATTATATAGTAGTGTATATTTCTATTTATATATATATATATTTATATATAGT
ATTGATTGTTATTACTTTAATATAATATTATTATTATATTTACTTTTTGTATTTCTATAT
Found at i:98465428 original size:63 final size:59
Alignment explanation
Indices: 98465352--98465476 Score: 144
Period size: 58 Copynumber: 2.1 Consensus size: 59
98465342 TATTGATGTT
* * *
98465352 TTTAAGTATTTTTCACATATATAGTTATAGCCTAATTTTTAGTTTCTTTATAAATTATATA-TA
1 TTTAAATAATTTTCAC-T-TATAGTTATA---TAATTTTTAGTTTCTTAATAAATTATATATTA
* **
98465415 TTTAAATAATTTTCACTTATATTTATATTTTTTTTAGTTTCTTAATAAATTATATATTA
1 TTTAAATAATTTTCACTTATAGTTATATAATTTTTAGTTTCTTAATAAATTATATATTA
98465474 TTT
1 TTT
98465477 TGGTCAAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
58 26 0.47
59 5 0.09
61 9 0.16
62 1 0.02
63 14 0.25
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (59 bp):
TTTAAATAATTTTCACTTATAGTTATATAATTTTTAGTTTCTTAATAAATTATATATTA
Found at i:98476587 original size:18 final size:18
Alignment explanation
Indices: 98476540--98476589 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
98476530 TTTTAACAAT
* *
98476540 TTTTAAAAATTAAAAAAA
1 TTTTAAAATTTATAAAAA
* *
98476558 ATTAAAATATTTATAAAAA
1 TTTTAAA-ATTTATAAAAA
98476577 TTTTAAAATTTAT
1 TTTTAAAATTTAT
98476590 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTTAAAATTTATAAAAA
Found at i:98476685 original size:11 final size:11
Alignment explanation
Indices: 98476640--98476666 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98476630 AAGAATATAC
98476640 AAAAAAAAGTT
1 AAAAAAAAGTT
98476651 AAAAAAAAGTT
1 AAAAAAAAGTT
98476662 AAAAA
1 AAAAA
98476667 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (11 bp):
AAAAAAAAGTT
Found at i:98477773 original size:26 final size:26
Alignment explanation
Indices: 98477743--98477796 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
98477733 ACTTTTTAAG
*
98477743 TAATTAATAC-AAATTATTTGTAAAAT
1 TAATT-ATACAAAAATATTTGTAAAAT
*
98477769 TAATTATACATAAAATATTTTTAAAAT
1 TAATTATACA-AAAATATTTGTAAAAT
98477796 T
1 T
98477797 TAAATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 5 0.21
27 15 0.62
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTATACAAAAATATTTGTAAAAT
Found at i:98484368 original size:30 final size:30
Alignment explanation
Indices: 98484332--98484424 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
98484322 TATCTTTCAA
98484332 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
* **
98484362 CCATGG---TA-TC-TTTCAAC--CATGGTCAA
1 CCATGGTCTTATTCATTTC-CCGTCAT-GT-TG
98484388 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
98484418 CCATGGT
1 CCATGGT
98484425 ATCTCTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 20
0.64 0.08 0.27
Matches are distributed among these distances:
24 3 0.06
25 6 0.13
26 9 0.19
27 2 0.04
29 2 0.04
30 16 0.34
31 6 0.13
32 3 0.06
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (30 bp):
CCATGGTCTTATTCATTTCCCGTCATGTTG
Found at i:98484394 original size:56 final size:56
Alignment explanation
Indices: 98484328--98484441 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
98484318 ATGGTATCTT
*
98484328 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
98484384 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
98484440 TC
1 TC
98484442 CTATTCATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (56 bp):
TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
Found at i:98484464 original size:102 final size:102
Alignment explanation
Indices: 98484282--98484487 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
98484272 ATGGTATCTT
* * *
98484282 TCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* * *
98484347 TTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
66 TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
* * *
98484384 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
*
98484449 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
66 TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
98484486 TC
1 TC
98484488 TTACACATTT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.38
Consensus pattern (102 bp):
TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
Found at i:98484510 original size:148 final size:148
Alignment explanation
Indices: 98484236--98484533 Score: 461
Period size: 148 Copynumber: 2.0 Consensus size: 148
98484226 ATAGTGTCTT
* * * * *
98484236 TCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* ** * * *
98484301 TTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCAT
66 TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
98484366 GGTATCTTTCAACCATGG
131 GGTATCTTTCAACCATGG
*
98484384 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* * *
98484449 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCAT
66 TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
98484514 GGTATCTTTCAACCATGG
131 GGTATCTTTCAACCATGG
98484532 TC
1 TC
98484534 TTACACATTT
Statistics
Matches: 135, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
148 135 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (148 bp):
TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
GGTATCTTTCAACCATGG
Found at i:98484537 original size:46 final size:46
Alignment explanation
Indices: 98484222--98484551 Score: 347
Period size: 46 Copynumber: 7.0 Consensus size: 46
98484212 TTTGACATGA
* * * *
98484222 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGT
* * *
98484268 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* ** *
98484314 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* ** *
98484360 TGCCATGGTATCTTTCAACCATGGTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATC--T------T--TCAACCATGGTCTTACTCATTTCATGTCAGGT
* * * *
98484416 TGCCATGGTATCTCTCAACCATGGTCCTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* *
98484462 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* *
98484508 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
98484552 AGAGCACACT
Statistics
Matches: 253, Mismatches: 20, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
45 4 0.02
46 202 0.80
48 1 0.00
54 2 0.01
56 44 0.17
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
Found at i:98488080 original size:3 final size:3
Alignment explanation
Indices: 98488072--98488179 Score: 173
Period size: 3 Copynumber: 36.0 Consensus size: 3
98488062 ACTGATAATT
98488072 AAG AAG AAG -AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
98488119 AAG AAG AAG AAG GAG AAG AAG AAG AAG AAG GAG AAG AAG AAG AAG AATG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G
*
98488168 ACG AAG AAG AAG
1 AAG AAG AAG AAG
98488180 GACGAAGGGT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
2 2 0.02
3 93 0.96
4 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.35, T:0.01
Consensus pattern (3 bp):
AAG
Found at i:98488215 original size:37 final size:36
Alignment explanation
Indices: 98488174--98488292 Score: 94
Period size: 37 Copynumber: 3.2 Consensus size: 36
98488164 AATGACGAAG
98488174 AAGAAGGACGAAGGGTTTTTTTTAGAGATTTTTGAAT
1 AAGAAGGA-GAAGGGTTTTTTTTAGAGATTTTTGAAT
* ** **** * * *** *
98488211 AAGAAGGAAAAGAATGGAGTTAAGAAGAATGACGAAG
1 AAGAAGGAGAAGGGTTTTTTTTAG-AGATTTTTGAAT
98488248 AAGAAGGATGAAGGGTTTTTTTTAGAGATTTTTGAAT
1 AAGAAGGA-GAAGGGTTTTTTTTAGAGATTTTTGAAT
98488285 AAGAAGGA
1 AAGAAGGA
98488293 AAAGAATGGA
Statistics
Matches: 54, Mismatches: 26, Indels: 4
0.64 0.31 0.05
Matches are distributed among these distances:
36 8 0.15
37 38 0.70
38 8 0.15
ACGTcount: A:0.41, C:0.02, G:0.29, T:0.28
Consensus pattern (36 bp):
AAGAAGGAGAAGGGTTTTTTTTAGAGATTTTTGAAT
Found at i:98488244 original size:74 final size:74
Alignment explanation
Indices: 98488158--98488306 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
98488148 GGAGAAGAAG
98488158 AAGAAGAATGACGAAGAAGAAGGACGAAGGGTTTTTTTTAGAGATTTTTGAATAAGAAGGAAAAG
1 AAGAAGAATGACGAAGAAGAAGGACGAAGGGTTTTTTTTAGAGATTTTTGAATAAGAAGGAAAAG
98488223 AATGGAGTT
66 AATGGAGTT
*
98488232 AAGAAGAATGACGAAGAAGAAGGATGAAGGGTTTTTTTTAGAGATTTTTGAATAAGAAGGAAAAG
1 AAGAAGAATGACGAAGAAGAAGGACGAAGGGTTTTTTTTAGAGATTTTTGAATAAGAAGGAAAAG
98488297 AATGGAGTT
66 AATGGAGTT
98488306 A
1 A
98488307 GGGTTTAATT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.25
Consensus pattern (74 bp):
AAGAAGAATGACGAAGAAGAAGGACGAAGGGTTTTTTTTAGAGATTTTTGAATAAGAAGGAAAAG
AATGGAGTT
Found at i:98498155 original size:2 final size:2
Alignment explanation
Indices: 98498148--98498186 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98498138 TTTTCAGATT
98498148 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98498187 TGTTTTGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98504975 original size:37 final size:37
Alignment explanation
Indices: 98504925--98505003 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
98504915 CACTCCAGAT
*
98504925 ATGTCGTGCTTGAGCTGTAACATAGTTGATTGTCAAC
1 ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
98504962 ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
1 ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
98504999 ATGTC
1 ATGTC
98505004 ATAATGTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (37 bp):
ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
Found at i:98509816 original size:22 final size:22
Alignment explanation
Indices: 98509773--98509827 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
98509763 TATGGTTTAA
98509773 TTATTATATTTTTTATTGTTATT
1 TTATTA-ATTTTTTATTGTTATT
*
98509796 TTATTAAGTTTTTTGTT-TTATT
1 TTATTAA-TTTTTTATTGTTATT
*
98509818 TTTTTAATTT
1 TTATTAATTT
98509828 AAAAAAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.10
22 12 0.41
23 14 0.48
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (22 bp):
TTATTAATTTTTTATTGTTATT
Found at i:98511343 original size:47 final size:46
Alignment explanation
Indices: 98511272--98511443 Score: 161
Period size: 47 Copynumber: 3.7 Consensus size: 46
98511262 ATCCATAAGT
* *
98511272 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAGTTCCA-TTCAC
* * * * * * *
98511319 GAACTCGGACTCAACTTAAAGAGTTCGGACG-ATCGCATCCA-TAAGT
1 GAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAG-TTCCATTCA-C
* *
98511365 GAACTTGGACTCAACTCAACA-AGCTCGGATGCCTAGTTCCATCTCAC
1 GAACTCGGACTCAACTCAA-AGAGTTCGGATGCCTAGTTCCAT-TCAC
* *
98511412 GAACTCAGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAAAGAGTTCGGATGC
98511444 TCAAATATCC
Statistics
Matches: 96, Mismatches: 22, Indels: 14
0.73 0.17 0.11
Matches are distributed among these distances:
45 2 0.02
46 31 0.32
47 61 0.64
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAGTTCCATTCAC
Found at i:98511355 original size:93 final size:93
Alignment explanation
Indices: 98511225--98511440 Score: 310
Period size: 93 Copynumber: 2.3 Consensus size: 93
98511215 CACCCATAAG
* *
98511225 CGAACTCGGACTCAACTCAATGAGCTT-GGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAAGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
* * *
98511289 AACGAGTTCGGATGCCTAGTTACATTTCA
65 AACAAGCTCGGATGCCTAGTTACATCTCA
* *
98511318 CGAACTCGGACTCAACTTAAAGAGTTCGGACGA-TCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAAAGAGTTCGGAC-ATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
98511382 AACAAGCTCGGATGCCTAGTTCCATCTCA
65 AACAAGCTCGGATGCCTAGTTACATCTCA
* *
98511411 CGAACTCAGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAAAGAGTTCGGA
98511441 TGCTCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
92 2 0.02
93 107 0.97
94 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAAAGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:98511393 original size:46 final size:46
Alignment explanation
Indices: 98511218--98511393 Score: 126
Period size: 46 Copynumber: 3.8 Consensus size: 46
98511208 TGTAACCCAC
** * *
98511218 CCATAAGCGAACTCGGACTCAACTCAATGAGCTTGGGC-ATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGA-TCGCAT
* * * * * * *
98511264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACG-ATCGCAT
* * * *
98511310 ACATTTCA-CGAACTCGGACTCAACTTAA-AGAGTTCGGACGATCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACA-AGCTCGGACGATCGCAT
* *
98511357 CCATAAGTGAACTTGGACTCAACTCAACAAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGA
98511394 TGCCTAGTTC
Statistics
Matches: 98, Mismatches: 24, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
45 2 0.02
46 61 0.62
47 33 0.34
48 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGATCGCAT
Found at i:98516210 original size:30 final size:28
Alignment explanation
Indices: 98516174--98516274 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
98516164 GACAAGAGTG
* *
98516174 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* * *
98516204 GCACTAAGTGTGAGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* *
98516232 GCACTAAGTGTGCGAGCTGAATGTATACA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
98516261 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98516275 GATTCACTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 24 0.40
29 19 0.32
30 17 0.28
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:98524157 original size:30 final size:28
Alignment explanation
Indices: 98524121--98524221 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
98524111 GACAAGAGTG
* *
98524121 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
98524151 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* *
98524179 GCACTAAGTGTGCGAGCTGAATGTATACA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
98524208 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98524222 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 19 0.31
30 18 0.29
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:98531693 original size:131 final size:131
Alignment explanation
Indices: 98531396--98531812 Score: 398
Period size: 131 Copynumber: 3.2 Consensus size: 131
98531386 CTTTATTTAA
* * * * * *
98531396 CATGAACAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCTGAAAAACTTGCTGATTTAAG
1 CATGAACAATTTTATTTGAGTTAACTGATTTAATATCACAACTCCGAAAAACTTACTAATTTAAG
* *
98531461 ATCACAATTGATATTATTAAGGTTCACTGATTTAAGATCGCAATCTAAGTTCATTCGATTTTAGA
66 ATCACAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGATTTTAGA
98531526 T
131 T
* * * *
98531527 CATGAATAATTCTATTTGAGTTAAC-GAATTCAATATCACAACTCCGAACAA-TTCACTAATTTA
1 CATGAACAATTTTATTTGAGTTAACTG-ATTTAATATCACAACTCCGAAAAACTT-ACTAATTTA
* **
98531590 AGATCGCAACTGATATTATTAAGGTTTGCTGATTTCAA-ATCGCAACCTAAGTTCATTCGATTTT
64 AGATCACAACTGATATTATTAAGGTTCACTGATTT-AAGATCGCAACCTAAGTTCATTCGATTTT
98531654 AGAT
128 AGAT
** ** * * *
98531658 CATGAACAATTTTATTTGAGTTTTCTGATTTAATATCGTAACTCC-AAACAGC-TAGTTGATTTA
1 CATGAACAATTTTATTTGAGTTAACTGATTTAATATCACAACTCCGAAA-AACTTA-CTAATTTA
*** * * ** * *
98531721 AGATCATGGCTAATATTGTTAAAATT-AGCTGATTTAAAATCGCAACATATA-TTCATTCGATTT
64 AGATCACAACTGATATTATTAAGGTTCA-CTGATTTAAGATCGCAACCTA-AGTTCATTCGATTT
* *
98531784 AATAT
127 TAGAT
* **
98531789 CATTAACAATTTTATCGGAGTTAA
1 CATGAACAATTTTATTTGAGTTAA
98531813 TTATTTTCAT
Statistics
Matches: 233, Mismatches: 43, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
130 8 0.03
131 221 0.95
132 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (131 bp):
CATGAACAATTTTATTTGAGTTAACTGATTTAATATCACAACTCCGAAAAACTTACTAATTTAAG
ATCACAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGATTTTAGA
T
Found at i:98537721 original size:63 final size:63
Alignment explanation
Indices: 98537600--98537747 Score: 181
Period size: 63 Copynumber: 2.3 Consensus size: 63
98537590 GTGATGTGAG
* * * * ** *
98537600 TTTGATTAATTATATAAGTAATCTAAAGTCTTCTTAAATTGTGTTTTTATAATTAAATAAGAT
1 TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAAT
* *
98537663 TTTGATTAATTAAATAATTAATCTAAAGTGTTCTTAAATTGAGTTTCTACT-GCCAAATAAAAT
1 TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTA-TAACCAAATAAAAT
* *
98537726 TTTGTTTAATTAGATAATTAAT
1 TTTGATTAATTAAATAATTAAT
98537748 AAAACTTTCT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
63 72 0.99
64 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (63 bp):
TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAAT
Found at i:98540442 original size:3 final size:3
Alignment explanation
Indices: 98540434--98540705 Score: 117
Period size: 3 Copynumber: 88.7 Consensus size: 3
98540424 ATTTATTTAC
* * *
98540434 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * **
98540482 ATT ATT -TT GTT AGC A-T ATT ATT CCTT TTT ACCGC ATT ATT ATT -TCCT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT A--TT ATT ATT ATT AT--T
* * * ** * * *
98540529 ATT CTTT ATAT ATT ATT ATT GTT ATC AAC ATAT GTT ATT ATT AAGT ACT
1 ATT -ATT AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT -ATT ATT
* * * * * *
98540578 AGT ATT -TT CCATT ATT ATT ATT AAT ATC ACT ACT ATC ATT ATT ATT
1 ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
98540624 ATT ATT ATT A-T ATT ACG A-T ACCTT TTT ATT ATT ATT ACT ATT -GT
1 ATT ATT ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT
98540668 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
98540706 ATTTCCCTTT
Statistics
Matches: 205, Mismatches: 44, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
2 10 0.05
3 179 0.87
4 11 0.05
5 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:98540802 original size:20 final size:21
Alignment explanation
Indices: 98540777--98540839 Score: 56
Period size: 26 Copynumber: 2.8 Consensus size: 21
98540767 TATTTTAGCA
98540777 CATTTATTTTATTTATTT-AT
1 CATTTATTTTATTTATTTCAT
98540797 CATTTACTCTCATTATTATTATTTCAT
1 CATTTA-T-T--TTA-T-TTATTTCAT
*
98540824 CATCTATTTTATTTAT
1 CATTTATTTTATTTAT
98540840 AGTTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
20 6 0.17
21 5 0.14
22 2 0.06
23 3 0.09
24 3 0.09
25 2 0.06
26 7 0.20
27 7 0.20
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTATTTTATTTATTTCAT
Found at i:98552783 original size:131 final size:131
Alignment explanation
Indices: 98552531--98552872 Score: 603
Period size: 131 Copynumber: 2.6 Consensus size: 131
98552521 GTGAATTCAT
98552531 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGTA
1 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGTA
* *
98552596 GTAGGGAAATAGATCAAAGATGATAGGCTTTAACCCCCTAAGCATTAGGGTAACAAGCCGAATTT
65 GTAGGGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTT
98552661 AC
130 AC
98552663 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAG
1 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAG
* *
98552728 TAGGGAAACAGATCAAAGATGATGGGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGAATTTA
66 TAGGGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTA
98552793 C
131 C
* *
98552794 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTGATCCCCTAAGTA
1 AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT-AACCCCTAAGTA
*
98552859 GTAGGGTAACAGAT
65 GTAGGGAAACAGAT
98552873 TGAATTGCAG
Statistics
Matches: 202, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
131 124 0.61
132 78 0.39
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (131 bp):
AAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAG
TAGGGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTA
C
Found at i:98552930 original size:131 final size:129
Alignment explanation
Indices: 98552532--98553300 Score: 568
Period size: 131 Copynumber: 5.9 Consensus size: 129
98552522 TGAATTCATA
98552532 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGTAG
* * * * * * *
98552597 TAGGGAAATAGATCAAAGATGATAGGCTTTAACCCCCTAAGCATTAGGGTAACA-AGCCGAATTT
65 TAGGGAAACAGATCGAAGATGAGA-GC-TTAACTCCCTAAGCAGTAGGGTAACAGA-TCGAA--G
98552661 AC-A-
125 ACGAG
98552664 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAGT
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAGT
* * * *
98552729 AGGGAAACAGATCAAAGATGATGGGCTTTAACTCCCTAAGCAGTAGGGTAACA-AGCCGAATTTA
66 AGGGAAACAGATCGAAGATGA-GAGC-TTAACTCCCTAAGCAGTAGGGTAACAGA-TCGAA--GA
98552793 C-A-
126 CGAG
* *
98552795 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTGATCCCCTAAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT-AACCCCTAAGTAG
* * * * * *
98552860 TAGGGTAACAGATTGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACG
65 TAGGGAAACAGATCGAAGATG-AGAGCTTAACTCCCTAAGCAGTAG-GGTAACAGATCGAAGACG
98552923 AAG
128 -AG
* * * *
98552926 AACCTTAAACCCCTAAGTAGTAGGGTAACA-G--GAAGATTTACAGATCTTATCTCCCTAAGCAA
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAC-CCCTAAGTAG
* * * * *
98552988 TAGTGG-AGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGGGTAACAGGTTGAATT
65 TAG-GGAAACAGATCGAAGATG-AG-AGCTT-AACTCCCTAAGCAGTAGGGTAACAGATCGAA--
98553051 G-C-AG
124 GACGAG
* * * * ** *
98553055 -ATCTT-ATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGA-CGA-AGAACATTAAACCCCTAA
1 AACCTTAAAC-CCCTAAGCAGTAG-GGTAACAGGCT-GAAGATTTACAGATC-TT-AACCCCTAA
* * * * * * * *
98553114 GCAGTAGGGTAACAGGTTGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAA
61 GTAGTAGGGAAACAGATCGAAGATG-AGAGCTTAACTCCCTAAGCAGTAG-GGTAACAGATCGAA
98553177 GACGAAG
124 GACG-AG
* * * *
98553184 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGATCTTATCTCCCTAAGCAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAC-CCCTAAGTAG
* * * *
98553246 TAGTGG-AGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGCGTAACAG
65 TAG-GGAAACAGATCGAAGATG-AG-AGCTT-AACTCCCTAAGCAGTAGGGTAACAG
98553301 GTTGAGTTTA
Statistics
Matches: 527, Mismatches: 70, Indels: 82
0.78 0.10 0.12
Matches are distributed among these distances:
126 1 0.00
127 10 0.02
128 107 0.20
129 37 0.07
130 117 0.22
131 174 0.33
132 81 0.15
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (129 bp):
AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGTAGT
AGGGAAACAGATCGAAGATGAGAGCTTAACTCCCTAAGCAGTAGGGTAACAGATCGAAGACGAG
Found at i:98552952 original size:86 final size:86
Alignment explanation
Indices: 98552849--98553392 Score: 844
Period size: 86 Copynumber: 6.3 Consensus size: 86
98552839 AAATCTTGAT
* *
98552849 CCCCTAAGTAGTAGGGTAACAGATTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
98552914 TCGAAGACGAAGAACCTTAAA
66 TCGAAGACGAAGAACCTTAAA
* ** * * *
98552935 CCCCTAAGTAGTAGGGTAACAGGAAGATTTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
98553000 TCGAAGACGAAGAACCTTAAA
66 TCGAAGACGAAGAACCTTAAA
98553021 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
98553086 TCGAAGACGAAGAACATTAAA
66 TCGAAGACGAAGAACCTTAAA
98553107 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
98553172 TCGAAGACGAAGAACCTTAAA
66 TCGAAGACGAAGAACCTTAAA
98553193 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
98553258 TCGAAGACGAAGAACCTTAAA
66 TCGAAGACGAAGAACCTTAAA
* * * *** *
98553279 CCCCTAAGCAGTAGCGTAACAGGTTGAGTTTACAGATC-TAAAACCCTAAGCAGTAG-GGAAACA
1 CCCCTAAGCAGTAGGGTAACAGGTTGA-ATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCA
* * *
98553342 GATC-AAGGATGACA-AGCCTTAAT
64 GATCGAA-GACGA-AGAACCTTAAA
*
98553365 CCCCTAAGCAGTAGGGTAACAGGCTGAA
1 CCCCTAAGCAGTAGGGTAACAGGTTGAA
98553393 AATTAAATAT
Statistics
Matches: 427, Mismatches: 27, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
85 4 0.01
86 414 0.97
87 9 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (86 bp):
CCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
TCGAAGACGAAGAACCTTAAA
Found at i:98553050 original size:172 final size:172
Alignment explanation
Indices: 98552664--98553392 Score: 868
Period size: 172 Copynumber: 4.2 Consensus size: 172
98552654 CGAATTTACA
* * * *
98552664 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAC-CCCTAAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGATCTTATCTCCCTAAGCAG
* * * * ** * * **
98552728 TAG-GGAAACAGATCAAAGATGATG-GGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGAATT
63 TAGTGG-AGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGGGTAACAGGTTG-ATT
* * * * * **
98552791 TACAAACCTTAAAC-CCCTAAGCAGTAG-GGTAACAG-GCTGAAGATTTACA-
125 TACAGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATC-GAAGA-CGA-AG
* * * * *
98552840 AATCTTGATCCCCTAAGTAGTAGGGTAACAGATTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
* **
98552905 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGTAGTAGGGTAACAGGAAGATTTACAGA
66 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATTTACAGA
*
98552970 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAG
131 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAG
98553012 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
98553077 TGGAGCAGATCGAAGACGAAGAACATTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGA
66 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATTTACAGA
98553142 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAG
131 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAG
98553184 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
*
98553249 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGCGTAACAGGTTGAGTTTACAG
66 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA-TTTACAG
*** * *
98553314 ATC-TAAAACCCTAAGCAGTAG-GGAAACAGATC-AAGGATGACA-
130 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAA-GACGA-AG
* * *
98553356 AGCCTTAATCCCCTAAGCAGTAGGGTAACAGGCTGAA
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAA
98553393 AATTAAATAT
Statistics
Matches: 490, Mismatches: 52, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
171 5 0.01
172 343 0.70
173 53 0.11
174 51 0.10
175 9 0.02
176 29 0.06
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (172 bp):
AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATTTACAGA
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAG
Found at i:98553139 original size:258 final size:258
Alignment explanation
Indices: 98552664--98553392 Score: 857
Period size: 258 Copynumber: 2.8 Consensus size: 258
98552654 CGAATTTACA
* * * *
98552664 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAC-CCCTAAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACA-G--GAAGAATTACAGATCTTATCTCCCTAAGCAA
* * * * ** * * * **
98552728 TAG-GGAAACAGATCAAAGATGATG-GGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCCGA-AT
63 TAGTGG-AGCAGATCGAAGACGAAGAACCTTAAAC-CCCTAAGCAGTAGCGTAACAGGTTGAGA-
* * * * * * ** * *
98552790 TTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA-GATTTACAAATC-TTGATCCCC
125 TTACAGATC-TAAAACCCTAAGCAGTAGGGAAACA-GATCAAGGA-CGACAAA-CATTAAACCCC
* *
98552853 TAAGTAGTAGGGTAACAGATTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
186 TAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA
98552918 AGACGAAG
251 AGACGAAG
* *
98552926 AACCTTAAACCCCTAAGTAGTAGGGTAACAGGAAGATTTACAGATCTTATCTCCCTAAGCAATAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGAAGAATTACAGATCTTATCTCCCTAAGCAATAG
* *
98552991 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA-ATTGCAG
66 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGCGTAACAGGTTGAGATTACAG
*** *
98553055 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAA-GACGA-AGAACATTAAACCCCTAAGCA
131 ATC-TAAAACCCTAAGCAGTAG-GGAAACAGATC-AAGGACGACA-AACATTAAACCCCTAAGCA
98553117 GTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
192 GTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
98553182 AG
257 AG
** * *
98553184 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAG
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGAAGAATTACAGATCTTATCTCCCTAAGCAATAG
*
98553249 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGCGTAACAGGTTGAGTTTACAG
66 TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGCGTAACAGGTTGAGATTACAG
* * * *
98553314 ATCTAAAACCCTAAGCAGTAGGGAAACAGATCAAGGATGACAAGCCTTAATCCCCTAAGCAGTAG
131 ATCTAAAACCCTAAGCAGTAGGGAAACAGATCAAGGACGACAAACATTAAACCCCTAAGCAGTAG
*
98553379 GGTAACAGGCTGAA
196 GGTAACAGGTTGAA
98553393 AATTAAATAT
Statistics
Matches: 409, Mismatches: 47, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
257 6 0.01
258 257 0.63
259 57 0.14
260 51 0.12
261 9 0.02
262 29 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (258 bp):
AACCTTAAACCCCTAAGCAGTAGGGTAACAGGAAGAATTACAGATCTTATCTCCCTAAGCAATAG
TGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTAGCGTAACAGGTTGAGATTACAG
ATCTAAAACCCTAAGCAGTAGGGAAACAGATCAAGGACGACAAACATTAAACCCCTAAGCAGTAG
GGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAG
Found at i:98555405 original size:3 final size:3
Alignment explanation
Indices: 98555397--98555684 Score: 147
Period size: 3 Copynumber: 92.7 Consensus size: 3
98555387 ATTTATTTAC
* *
98555397 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * **
98555445 ATT ATT -TT GTT AGC A-T ATT ATT CCTT TTT ACCGC ATT ATT ATT -TCCT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT A--TT ATT ATT ATT AT--T
* * * ** * *
98555492 ATT CTTT ATAT ATT ATT ATT GTT ATC AAC ATAT GTT ATT ATT AAGGT
1 ATT -ATT AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT -A-TT
* * * * * * *
98555539 ACT AGT ATT -TT CCATT ATT ATT ATT AAT ATC ACT ACT ATC ATT ATT
1 ATT ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
98555585 ATT ATT ATT A-T ATT ACG A-T ACCTT TTT ATT ATT ATT ACT ACTGT ATT
1 ATT ATT ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT A-T-T ATT
98555632 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98555680 ATT AT
1 ATT AT
98555685 ATTTCCCTTT
Statistics
Matches: 221, Mismatches: 42, Indels: 44
0.72 0.14 0.14
Matches are distributed among these distances:
2 9 0.04
3 192 0.87
4 12 0.05
5 8 0.04
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:98555781 original size:20 final size:21
Alignment explanation
Indices: 98555756--98555818 Score: 56
Period size: 26 Copynumber: 2.8 Consensus size: 21
98555746 TATTTTAGCA
98555756 CATTTATTTTATTTATTT-AT
1 CATTTATTTTATTTATTTCAT
98555776 CATTTACTCTCATTATTATTATTTCAT
1 CATTTA-T-T--TTA-T-TTATTTCAT
*
98555803 CATCTATTTTATTTAT
1 CATTTATTTTATTTAT
98555819 AGTTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
20 6 0.17
21 5 0.14
22 2 0.06
23 3 0.09
24 3 0.09
25 2 0.06
26 7 0.20
27 7 0.20
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTATTTTATTTATTTCAT
Found at i:98559431 original size:86 final size:86
Alignment explanation
Indices: 98559286--98559459 Score: 321
Period size: 86 Copynumber: 2.0 Consensus size: 86
98559276 AATGTGATTT
* *
98559286 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTTATACCAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
98559351 ATTTTATGGCATAATTAATAA
66 ATTTTATGGCATAATTAATAA
*
98559372 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGACT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
98559437 ATTTTATGGCATAATTAATAA
66 ATTTTATGGCATAATTAATAA
98559458 TT
1 TT
98559460 AAATTTTAAT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.39
Consensus pattern (86 bp):
TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
ATTTTATGGCATAATTAATAA
Found at i:98563994 original size:46 final size:46
Alignment explanation
Indices: 98563927--98564273 Score: 505
Period size: 46 Copynumber: 7.7 Consensus size: 46
98563917 TGGCAACCTG
*
98563927 TGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
98563973 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
98564011 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
98564057 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
98564103 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
98564149 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
98564195 AGAATAAGACCATGGTTGAAAGATATCATGGCAACATGATA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
98564241 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
98564274 TCACGTCAAA
Statistics
Matches: 275, Mismatches: 17, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
38 36 0.13
41 2 0.01
43 2 0.01
45 1 0.00
46 234 0.85
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:98564013 original size:84 final size:85
Alignment explanation
Indices: 98563878--98564273 Score: 546
Period size: 92 Copynumber: 4.5 Consensus size: 85
98563868 AGTGTGCTCT
98563878 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG-TGTGTAAGACCATGG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
*
98563942 TTGAAAGATACCATGGTAAC
66 TTGAAAGATACCATGGCAAC
98563962 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG-TGTGTAAGACCATGG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
98564026 TTGAAAGATACCATGGCAAC
66 TTGAAAGATACCATGGCAAC
98564046 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--ATGTGTAAG
98564111 ACCATGGTTGAAAGATACCATGGCAAC
59 ACCATGGTTGAAAGATACCATGGCAAC
* * *
98564138 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--ATG---TG--TAAG
*
98564203 ACCATGGTTGAAAGATATCATGGCAAC
59 ACCATGGTTGAAAGATACCATGGCAAC
* * * * *
98564230 ATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
98564274 TCACGTCAAA
Statistics
Matches: 286, Mismatches: 12, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
84 130 0.45
87 6 0.02
89 2 0.01
90 1 0.00
91 1 0.00
92 146 0.51
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.23
Consensus pattern (85 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGTAAGACCATGG
TTGAAAGATACCATGGCAAC
Found at i:98564579 original size:23 final size:25
Alignment explanation
Indices: 98564535--98564580 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
98564525 ATAAATATAC
*
98564535 ATAAAATATATGGAAATGATGAAGA
1 ATAAAATATATGGAAATAATGAAGA
*
98564560 ATAAAATAT-T-GATATAATGAA
1 ATAAAATATATGGAAATAATGAA
98564581 ATGAATGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 1 0.05
25 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (25 bp):
ATAAAATATATGGAAATAATGAAGA
Found at i:98569366 original size:40 final size:40
Alignment explanation
Indices: 98569322--98569398 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
98569312 TTATTTTGTG
* *
98569322 ATAGTTAAATTGCTATCTTTCTTACGAATGATCAAATGTT
1 ATAGTTAAATTGCCATCTTTCTTACGAATAATCAAATGTT
*
98569362 ATAGTTAATTTGCCATCTTTCTTACGAATAATCAAAT
1 ATAGTTAAATTGCCATCTTTCTTACGAATAATCAAAT
98569399 ATTTCATGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (40 bp):
ATAGTTAAATTGCCATCTTTCTTACGAATAATCAAATGTT
Found at i:98569659 original size:29 final size:29
Alignment explanation
Indices: 98569615--98569690 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
98569605 GAAGAGGTGG
*
98569615 AGAACTTGTTCATTGAGAGTTTATGATGA
1 AGAACTTGTTCGTTGAGAGTTTATGATGA
*
98569644 AGAACTTGTTCGTTGAGAGTTTGTGATGA
1 AGAACTTGTTCGTTGAGAGTTTATGATGA
98569673 AGAACTTGTTCGTTGAGA
1 AGAACTTGTTCGTTGAGA
98569691 ATTCGTGTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.37
Consensus pattern (29 bp):
AGAACTTGTTCGTTGAGAGTTTATGATGA
Found at i:98578250 original size:31 final size:31
Alignment explanation
Indices: 98578212--98578273 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
98578202 CTAAAAGGTA
** *
98578212 GAGATGTCTATGGAGGAAACAGTACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
*
98578243 GAGATGTCTATAAAGGAAATAATACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
98578274 TACCACATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (31 bp):
GAGATGTCTATAAAGGAAACAATACTCATCT
Found at i:98586466 original size:23 final size:24
Alignment explanation
Indices: 98586428--98586472 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
98586418 TTTGCTCTTC
*
98586428 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
98586452 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
98586473 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:98586731 original size:55 final size:52
Alignment explanation
Indices: 98586541--98586795 Score: 232
Period size: 55 Copynumber: 4.8 Consensus size: 52
98586531 ACACGGGTAC
* * * * *
98586541 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATG-AA
* * *
98586590 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAA
* ** *
98586643 CTCACCAATGCCATGCCTTGGTATGGTCTTACATGGGACCTTTGCCTTATGGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-G-AA
* * * *
98586698 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATG-AA
*
98586751 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
98586796 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 34 0.20
52 2 0.01
53 46 0.27
54 15 0.09
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAA
Found at i:98586732 original size:108 final size:110
Alignment explanation
Indices: 98586588--98586788 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
98586578 ATCCTTTTGA
* *
98586588 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
98586651 -TGCCATGCCTTGGTATGGTCTTACATGGGACCTTTGCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
* * * *
98586696 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
98586761 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
98586789 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
Found at i:98592430 original size:23 final size:23
Alignment explanation
Indices: 98592404--98592462 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
98592394 TAGAGATCAA
* *
98592404 ACTTGTGTGCATTT-CGATTTGGT
1 ACTTGTGTGCATTTAC-ATATGGC
*
98592427 ACTTGTGTGCGTTTACATATGGC
1 ACTTGTGTGCATTTACATATGGC
*
98592450 ACTTATGTGCATT
1 ACTTGTGTGCATT
98592463 CTCAGAGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (23 bp):
ACTTGTGTGCATTTACATATGGC
Found at i:98594064 original size:19 final size:19
Alignment explanation
Indices: 98594032--98594074 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
98594022 AAAGCGTATA
*
98594032 CTGGCAGATGAAGTACATC
1 CTGGCACATGAAGTACATC
* *
98594051 CTGGCACATTAAGTTCATC
1 CTGGCACATGAAGTACATC
*
98594070 TTGGC
1 CTGGC
98594075 TCATAAGCGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
CTGGCACATGAAGTACATC
Found at i:98602064 original size:56 final size:55
Alignment explanation
Indices: 98601931--98602084 Score: 197
Period size: 53 Copynumber: 2.8 Consensus size: 55
98601921 AACATAGCAC
* * *
98601931 GCCTCTCAACGGGGCTACATAAGCTCCCGGACCTAGCATGCATCACATAACCACA
1 GCCTCTCAACGGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
** *
98601986 -CCTCTCATA--GGGCTACATAAGCTCCCGGACCTAGTGTGTACCACATAATAACA
1 GCCTCTCA-ACGGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
* *
98602039 TGCCTCTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTACCA
1 -GCCTCTCAACGGGGCTACATAAGCTCCCGGACCTAGCATGTACCA
98602085 TGTCATCAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
53 38 0.45
54 8 0.10
55 8 0.10
56 30 0.36
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (55 bp):
GCCTCTCAACGGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
Found at i:98609270 original size:56 final size:54
Alignment explanation
Indices: 98609123--98609277 Score: 159
Period size: 54 Copynumber: 2.8 Consensus size: 54
98609113 CACAACATAG
* * * * * *
98609123 CACGCCTTTCAACGGGGCTACACGAGCTCCTGGACCTAGCATGCATCACATAAC
1 CACGCCTTTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTACCACATAAA
* ** * * *
98609177 CACGCCTCTCAACAAGGCTACATAAGGTCCC-AGACCTAGCGTGTACCACATAATAA
1 CACGCCTTTCAACGGGGCTACACAAGCTCCCGA-ACCTAGCATGTACCACAT-A-AA
*
98609233 CATGCCTTTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTA
1 CACGCCTTTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTA
98609278 TCATGTCATC
Statistics
Matches: 78, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
54 39 0.50
55 1 0.01
56 37 0.47
57 1 0.01
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.19
Consensus pattern (54 bp):
CACGCCTTTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTACCACATAAA
Found at i:98614153 original size:40 final size:40
Alignment explanation
Indices: 98614108--98614295 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
98614098 ATAACCACAA
* * * *
98614108 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
98614148 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
98614188 GCACGAATGCCTTCTGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* * *
98614228 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAATC-CCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
98614268 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
98614296 GTATCATTCA
Statistics
Matches: 133, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:98614215 original size:80 final size:80
Alignment explanation
Indices: 98614088--98614299 Score: 284
Period size: 80 Copynumber: 2.7 Consensus size: 80
98614078 TCTTCGGAAT
* * * * *
98614088 TTAG-CCAGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCAC
98614152 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * *
98614167 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCTGGTCTTAGCCCGGATATAACAACTCGCA
1 TTAGCCCAGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCA
98614231 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* * *
98614247 TTAGCCCAGATATAATCCCTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTAT
98614300 CATTCAAATG
Statistics
Matches: 113, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
79 5 0.04
80 107 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAACAACTCGCAC
AAATGCCTTCGGGTC
Found at i:98616617 original size:39 final size:40
Alignment explanation
Indices: 98616569--98616652 Score: 125
Period size: 42 Copynumber: 2.1 Consensus size: 40
98616559 TCTTAGATCC
*
98616569 GCCACCAC-TTTACGGCTAAGGGCATCAGCTACTACGTTA
1 GCCACCACTTTTACGGCTAAGGGCATCAGCTACCACGTTA
*
98616608 GCCATCACTTATTTACGGCTAAGGGCATCAGCTACCACGTTA
1 GCCACCAC-T-TTTACGGCTAAGGGCATCAGCTACCACGTTA
98616650 GCC
1 GCC
98616653 TTACCTGGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
39 7 0.17
42 33 0.82
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (40 bp):
GCCACCACTTTTACGGCTAAGGGCATCAGCTACCACGTTA
Found at i:98618766 original size:15 final size:15
Alignment explanation
Indices: 98618746--98618775 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98618736 CATTTTATTT
98618746 ATATTAGGATAATTA
1 ATATTAGGATAATTA
98618761 ATATTAGGATAATTA
1 ATATTAGGATAATTA
98618776 TTAGGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:98618822 original size:10 final size:10
Alignment explanation
Indices: 98618807--98618832 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
98618797 GATTTTATTC
98618807 TAATTATCTT
1 TAATTATCTT
98618817 TAATTATCTT
1 TAATTATCTT
98618827 TAATTA
1 TAATTA
98618833 AATGTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATTATCTT
Found at i:98622998 original size:21 final size:21
Alignment explanation
Indices: 98622972--98623014 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
98622962 ACAACATGAG
* *
98622972 ATTGTGTACTTCCATATGGCT
1 ATTGTGTACGTCCATATAGCT
98622993 ATTGTGTACGTCCATATAGCT
1 ATTGTGTACGTCCATATAGCT
98623014 A
1 A
98623015 AGACCCATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (21 bp):
ATTGTGTACGTCCATATAGCT
Found at i:98627795 original size:46 final size:44
Alignment explanation
Indices: 98627692--98627905 Score: 207
Period size: 46 Copynumber: 4.7 Consensus size: 44
98627682 ATGCTGATAC
* * *
98627692 CATGTCCCAGACATGATCTTACACTGGCACATCTC-ATAGCCGATG
1 CATGTCCCAGACATG-TCTTACACTGGCTCTTCTCGA-GGCCGATG
*
98627737 CATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGC-T-CTTCTCGAGGCCGATG
* * * *
98627783 CATGTCCAAGACATGTCTTACACTAGCGCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACT-G-GCTCTTCTCGAGGCCGATG
* * *
98627829 CCATGTCCCAGACATGGTCTTACACTGACTC-TCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTTC-T--CGAGGCCGATG
*
98627877 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
98627906 ACACAAGTGA
Statistics
Matches: 142, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
44 12 0.08
45 17 0.12
46 63 0.44
47 31 0.22
48 19 0.13
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTTCTCGAGGCCGATG
Found at i:98627877 original size:94 final size:92
Alignment explanation
Indices: 98627692--98627908 Score: 264
Period size: 94 Copynumber: 2.3 Consensus size: 92
98627682 ATGCTGATAC
98627692 CATGTCCCAGACATGATCTTACACT-G-GCACATCTCATAGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACATG-TCTTACACTAGCGCACATCTCATAGCCGATGCATGTCCCAGACATGTCT
* ** *
98627755 TACACTGGCTTACTTCTCGAGGCTGATG
65 TACACTGACTTACTAATCGAGGCCGATG
* * *
98627783 CATGTCCAAGACATGTCTTACACTAGCGCTCGTCTCA-ATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCGCACATCTCATA-GCCGATG-CATGTCCCAGACAT-GT
*
98627847 CTTACACTGACTCT-CATAAT-GTGGCCGATG
63 CTTACACTGACT-TAC-TAATCGAGGCCGATG
*
98627877 CATGTCCCAGACATGTCTTACACTAGCTCACA
1 CATGTCCCAGACATGTCTTACACTAGCGCACA
98627909 CAAGTGACCC
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
90 9 0.08
91 16 0.15
92 15 0.14
93 14 0.13
94 50 0.47
95 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTT
ACACTGACTTACTAATCGAGGCCGATG
Found at i:98627896 original size:140 final size:141
Alignment explanation
Indices: 98627634--98627900 Score: 357
Period size: 140 Copynumber: 1.9 Consensus size: 141
98627624 GGGGTCAGGT
* * * *
98627634 GCTGATGCTATGTCCCAGACATGGTCTTACACAAGCTCTAGTATATCTATGCTGATACCATGTCC
1 GCTGATGCTATGTCCAAGACATGGTCTTACACAAGCGCTAG-ATATCAATGCCGATACCATGTCC
98627699 CAGACATGATCTTACACTGGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
65 CAGACATGATCTTACACTGGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
98627764 TTACTTCTCGAG
130 TTACTTCTCGAG
* * * *
98627776 GCTGATGC-ATGTCCAAGACAT-GTCTTACACTAGCGCTCG-TCTCAATGCCGATGCCATGTCCC
1 GCTGATGCTATGTCCAAGACATGGTCTTACACAAGCGCTAGATATCAATGCCGATACCATGTCCC
*
98627838 AGACATGGTCTTACACT-G-AC-TCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACAC
66 AGACATGATCTTACACTGGCACATCTCAT-A----GCCGATGCATGTCCCAGACATGTCTTACAC
98627900 T
126 T
98627901 AGCTCACACA
Statistics
Matches: 111, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
135 6 0.05
136 3 0.03
137 1 0.01
138 35 0.32
140 46 0.41
141 12 0.11
142 8 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCTGATGCTATGTCCAAGACATGGTCTTACACAAGCGCTAGATATCAATGCCGATACCATGTCCC
AGACATGATCTTACACTGGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACTTCTCGAG
Found at i:98641033 original size:17 final size:19
Alignment explanation
Indices: 98641000--98641034 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
98640990 ATTATTTGGA
98641000 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
98641019 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
98641035 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:98641208 original size:12 final size:12
Alignment explanation
Indices: 98641177--98641210 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
98641167 ATATTTTTTA
98641177 AAAAATT-ATAT
1 AAAAATTAATAT
98641188 AAAAA-TAATAT
1 AAAAATTAATAT
98641199 AAAAATTAATAT
1 AAAAATTAATAT
98641211 GGACGAGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATTAATAT
Found at i:98644113 original size:5 final size:5
Alignment explanation
Indices: 98644103--98644133 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
98644093 TCAATATAAC
98644103 ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA A
98644134 AAGAAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:98644249 original size:24 final size:23
Alignment explanation
Indices: 98644201--98644250 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
98644191 AAATAAAAAA
98644201 ATTTATAATATAATGAATTTTTAT
1 ATTTATAATATAAT-AATTTTTAT
98644225 ATTTATAATTATAAT-ATTTTATAT
1 ATTTATAA-TATAATAATTTT-TAT
98644249 AT
1 AT
98644251 AGAATATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 5 0.21
24 13 0.54
25 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTATAATATAATAATTTTTAT
Found at i:98649665 original size:11 final size:11
Alignment explanation
Indices: 98649649--98649682 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
98649639 TAGTTTAGTC
98649649 CTTGAATATTT
1 CTTGAATATTT
*
98649660 CTTGAATATTC
1 CTTGAATATTT
98649671 CTTGAATTATTT
1 CTTGAA-TATTT
98649683 TTAGAGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (11 bp):
CTTGAATATTT
Done.