Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 341 of 444
Found at i:98649911 original size:38 final size:38
Alignment explanation
Indices: 98649855--98649928 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
98649845 CTCTACTGAG
*
98649855 TACATGTTAAGCAAGTCTACTGCTAGTGTTGAATTGAA
1 TACATGTTAAGCAAGTCTACTGCTAGCGTTGAATTGAA
* * *
98649893 TACATGTTAAGCATGTCTATTGTTAGCGTTGAATTG
1 TACATGTTAAGCAAGTCTACTGCTAGCGTTGAATTG
98649929 TTCTATTACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (38 bp):
TACATGTTAAGCAAGTCTACTGCTAGCGTTGAATTGAA
Found at i:98652807 original size:11 final size:10
Alignment explanation
Indices: 98652782--98652815 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
98652772 CTCCAAAAAA
*
98652782 TTTAAACTTT
1 TTTAAAATTT
98652792 TTTAAAATTAT
1 TTTAAAATT-T
98652803 TTTAAAATTT
1 TTTAAAATTT
98652813 TTT
1 TTT
98652816 TATATGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:98653914 original size:6 final size:6
Alignment explanation
Indices: 98653903--98653942 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
98653893 TTAGTTTGTT
98653903 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
1 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
98653943 TCCTATTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCAAC
Found at i:98663739 original size:40 final size:40
Alignment explanation
Indices: 98663694--98663860 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
98663684 CGGAATATAA
98663694 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
98663734 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
98663774 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98663814 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
98663853 CCGGATAT
1 CCGGATAT
98663861 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98663844 original size:80 final size:79
Alignment explanation
Indices: 98663694--98663860 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
98663684 CGGAATATAA
* *
98663694 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
98663759 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
98663774 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
98663836 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
98663853 CCGGATAT
1 CCGGATAT
98663861 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:98664709 original size:17 final size:19
Alignment explanation
Indices: 98664686--98664731 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
98664676 AAGAAGCATG
98664686 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
98664704 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
98664722 AATCATGCTC
1 AATCATGCTC
98664732 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:98671780 original size:46 final size:46
Alignment explanation
Indices: 98671727--98671902 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98671717 TATTTGGGCA
98671727 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98671773 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98671820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98671866 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98671903 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98671882 original size:93 final size:93
Alignment explanation
Indices: 98671723--98671894 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98671713 GGGATATTTG
* *
98671723 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98671788 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98671816 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98671881 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98671895 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98674889 original size:15 final size:15
Alignment explanation
Indices: 98674850--98674928 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
98674840 GTATCTTGGG
*
98674850 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
98674865 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
98674880 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
98674894 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
98674909 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
98674923 TTTCTT
1 TTTCTT
98674929 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:98674913 original size:29 final size:29
Alignment explanation
Indices: 98674841--98674927 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
98674831 CATAGTATCG
* * * *
98674841 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
98674871 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
98674900 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
98674928 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:98677364 original size:46 final size:46
Alignment explanation
Indices: 98677311--98677486 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98677301 TATTTGGGCA
98677311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98677357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98677404 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98677450 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98677487 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98677466 original size:93 final size:93
Alignment explanation
Indices: 98677307--98677478 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98677297 GGGATATTTG
* *
98677307 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98677372 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98677400 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98677465 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98677479 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98680473 original size:15 final size:15
Alignment explanation
Indices: 98680434--98680512 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
98680424 GTATCTTGGG
*
98680434 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
98680449 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
98680464 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
98680478 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
98680493 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
98680507 TTTCTT
1 TTTCTT
98680513 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:98680497 original size:29 final size:29
Alignment explanation
Indices: 98680425--98680511 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
98680415 CATAGTATCG
* * * *
98680425 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
98680455 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
98680484 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
98680512 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:98682948 original size:46 final size:46
Alignment explanation
Indices: 98682895--98683070 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98682885 TATTTGGGCA
98682895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98682941 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98682988 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98683034 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98683071 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98683050 original size:93 final size:93
Alignment explanation
Indices: 98682891--98683062 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98682881 GGGATATTTG
* *
98682891 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98682956 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98682984 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98683049 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98683063 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98685369 original size:48 final size:50
Alignment explanation
Indices: 98685202--98685374 Score: 160
Period size: 48 Copynumber: 3.5 Consensus size: 50
98685192 CAATGTCATG
** ** *
98685202 TCCCAGACATGGTCTTACACTGACTA-TCGAAATCGACG--CCGATGCCATG
1 TCCCAGACATGGTCTTACACTGAC-ACTC-ACTTATACGTACCGATGCCATA
* ** * * *
98685251 TCCCAGACATGGTCTTACACT-AGCTCTCACTTATTTGTACAGATACCATT
1 TCCCAGACATGGTCTTACACTGA-CACTCACTTATACGTACCGATGCCATA
* *
98685301 TCCCAGACATGGTCTTACACTGACAC-CTC-TATACGTTCCGATGCCATA
1 TCCCAGACATGGTCTTACACTGACACTCACTTATACGTACCGATGCCATA
98685349 TCCCAGACATGGTCTTACACTGACAC
1 TCCCAGACATGGTCTTACACTGACAC
98685375 ATCTCGTAGC
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
48 43 0.43
49 26 0.26
50 31 0.31
51 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACACTGACACTCACTTATACGTACCGATGCCATA
Found at i:98685506 original size:48 final size:47
Alignment explanation
Indices: 98685198--98685553 Score: 227
Period size: 46 Copynumber: 7.5 Consensus size: 47
98685188 AAGTCAATGT
* ** * *
98685198 CATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGACGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTG-CTCTC-ATCTCAATGCCGATGC
* * * *
98685247 CATGTCCCAGACATGGTCTTACACTAGCTCTCA-CTTATTTGTACAGATAC
1 CATGTCCCAGACATGGTCTTACACT-GCTCTCATCTCA-ATG--CCGATGC
* * *
98685297 CATTTCCCAGACATGGTCTTACACTGACAC-C-TCT-ATACGTTCCGATGC
1 CATGTCCCAGACATGGTCTTACACTG-CTCTCATCTCA-A--TGCCGATGC
* * * *
98685345 CATATCCCAGACATGGTCTTACACTG-ACACATCTC-GTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGCTCTCATCTCAAT-GCCGATGC
* * * *
98685390 CTTGTCTCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACT-GCTCT-CATCTCAATGCCGATGC
* * **
98685436 CATGTCCCAAACGT-GTCTTACACTAGCTCTTGTCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACT-GCTCTCATCTCAATGCCGATGC
* **
98685483 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTA-GCCGATG-
1 CATGTCCCAGACATGGTCTTACACT-GCTCTCAT-CTCAATGCCGATGC
98685530 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
98685554 AGTACACAAA
Statistics
Matches: 246, Mismatches: 41, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
44 10 0.04
45 13 0.05
46 66 0.27
47 29 0.12
48 60 0.24
49 35 0.14
50 33 0.13
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGCTCTCATCTCAATGCCGATGC
Found at i:98685527 original size:94 final size:92
Alignment explanation
Indices: 98685383--98685555 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
98685373 ACATCTCGTA
* * *
98685383 GCCGATGCTTGTCTCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAAC
*
98685448 GTGTCTTACACTAGCTCTTGTCTCAAT
66 ATGTCTTACACTAGCTCTTGTCTCAAT
98685475 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTA-GCCGATGCATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCG-AGGCCGATGCATGTCC
*
98685537 CAGACATGTCTTACACTAG
61 CAAACATGTCTTACACTAG
98685556 TACACAAATA
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 49 0.69
95 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:98691719 original size:20 final size:21
Alignment explanation
Indices: 98691694--98691733 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98691684 CTCTTGAAAC
98691694 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
* *
98691714 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
98691734 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:98693067 original size:48 final size:51
Alignment explanation
Indices: 98692948--98693080 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 51
98692938 AATCGAGGCT
*
98692948 GATGCCATGTCCCAAACATGGTCTTACACT-AGC-TCTCACATATCTGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGA-CACCTCACATATCTGTGCC
* * * **
98692998 GATGTCC-TGTCCCAGATATGGTTTTACACTGACACCT-GTATA-C-GTGCC
1 GATG-CCATGTCCCAAACATGGTCTTACACTGACACCTCACATATCTGTGCC
98693046 GATGCCATGTCCCAAACATGGTCTTACACTGACAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACAC
98693081 ATCTCGTAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
47 2 0.03
48 34 0.49
49 1 0.01
50 28 0.40
51 5 0.07
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (51 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACACCTCACATATCTGTGCC
Found at i:98693147 original size:46 final size:44
Alignment explanation
Indices: 98693051--98693165 Score: 115
Period size: 46 Copynumber: 2.5 Consensus size: 44
98693041 GTGCCGATGC
* * *
98693051 CATGTCCCAAACATGGTCTTACACTGACACATCTCGTAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGACGATA
* *
98693096 GATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGACGATA
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GACGATA
* * *
98693142 CATGTCCTAGATATGTTTTACACT
1 CATGTCCCAGACATGTCTTACACT
98693166 AGATCTTGTC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
44 12 0.21
45 13 0.22
46 33 0.57
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGACGATA
Found at i:98699609 original size:18 final size:18
Alignment explanation
Indices: 98699586--98699622 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
98699576 CTTAAAAATT
98699586 GAAGTAACTTATTTTAGA
1 GAAGTAACTTATTTTAGA
98699604 GAAGTAACTTATTTTAGA
1 GAAGTAACTTATTTTAGA
98699622 G
1 G
98699623 CTTACTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (18 bp):
GAAGTAACTTATTTTAGA
Found at i:98700957 original size:2 final size:2
Alignment explanation
Indices: 98700950--98700988 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98700940 AAATGTTGTT
98700950 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98700989 TACATAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98701072 original size:7 final size:7
Alignment explanation
Indices: 98701060--98701085 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
98701050 TGAATGGAGT
98701060 ATGAAAG
1 ATGAAAG
98701067 ATGAAAG
1 ATGAAAG
98701074 ATGAAAG
1 ATGAAAG
98701081 ATGAA
1 ATGAA
98701086 TTATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (7 bp):
ATGAAAG
Found at i:98703753 original size:25 final size:29
Alignment explanation
Indices: 98703725--98703789 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 29
98703715 TTACGGAAAC
98703725 TATATTAATT-A-TAATATTA-AA-TAAT
1 TATATTAATTAATTAATATTACAACTAAT
*
98703750 TATATCAAATTAATTAATATTACAACTAAT
1 TATAT-TAATTAATTAATATTACAACTAAT
98703780 T-TATTTAATT
1 TATA-TTAATT
98703790 TAAAAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
25 5 0.16
26 4 0.12
27 1 0.03
28 8 0.25
29 8 0.25
30 6 0.19
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (29 bp):
TATATTAATTAATTAATATTACAACTAAT
Found at i:98705871 original size:25 final size:25
Alignment explanation
Indices: 98705830--98705877 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
98705820 ACAGGATTCA
*
98705830 CCATATAGACTTTCTAGATAACTCG
1 CCATATAGACTTCCTAGATAACTCG
98705855 CCATA-AGAGCTTCCTAGATAACT
1 CCATATAGA-CTTCCTAGATAACT
98705878 TCAGCACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (25 bp):
CCATATAGACTTCCTAGATAACTCG
Found at i:98706546 original size:4 final size:4
Alignment explanation
Indices: 98706537--98706648 Score: 215
Period size: 4 Copynumber: 28.0 Consensus size: 4
98706527 GAACACATAC
*
98706537 ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
98706585 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
98706633 ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT
98706649 CAACTCCTCA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 106 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:98708664 original size:8 final size:8
Alignment explanation
Indices: 98708651--98708678 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
98708641 AGGAGGGCCA
98708651 AATTGAAG
1 AATTGAAG
98708659 AATTGAAG
1 AATTGAAG
98708667 AATTGAAG
1 AATTGAAG
98708675 AATT
1 AATT
98708679 AGTGGTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:98709670 original size:19 final size:18
Alignment explanation
Indices: 98709641--98709676 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
98709631 AGATATTAAA
98709641 TTCACTAATTTAATTTAT
1 TTCACTAATTTAATTTAT
*
98709659 TTCACTTAATTTATTTTA
1 TTCAC-TAATTTAATTTA
98709677 CAATCACAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (18 bp):
TTCACTAATTTAATTTAT
Found at i:98716869 original size:78 final size:78
Alignment explanation
Indices: 98716759--98716915 Score: 262
Period size: 78 Copynumber: 2.0 Consensus size: 78
98716749 TAGGTCAAAT
* *
98716759 AGGTTTTTTTGGTTTGTAACGCTCTAAGGCTT-AGTACAGGTATGAAAGTCAAAAACAATAAGCA
1 AGGTGTTTTTGGTTTGTAACGCTCTAAAGCTTAAG-ACAGGTATGAAAGTCAAAAACAATAAGCA
98716823 TTAAAGATGGTTAC
65 TTAAAGATGGTTAC
* *
98716837 AGGTGTTTTTGGTTTGTAACGTTCTAAAGCTTAAGACAGGTATGAAATTCAAAAACAATAAGCAT
1 AGGTGTTTTTGGTTTGTAACGCTCTAAAGCTTAAGACAGGTATGAAAGTCAAAAACAATAAGCAT
98716902 TAAAGATGGTTAC
66 TAAAGATGGTTAC
98716915 A
1 A
98716916 AACAAGAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
78 72 0.97
79 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (78 bp):
AGGTGTTTTTGGTTTGTAACGCTCTAAAGCTTAAGACAGGTATGAAAGTCAAAAACAATAAGCAT
TAAAGATGGTTAC
Found at i:98726205 original size:30 final size:30
Alignment explanation
Indices: 98726169--98726269 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
98726159 GACAAGATTG
* * *
98726169 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
98726199 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
98726227 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
98726256 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98726270 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:98726281 original size:29 final size:28
Alignment explanation
Indices: 98726198--98726273 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
98726188 AAAATTGTAC
* *
98726198 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
98726226 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
98726255 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
98726274 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:98734061 original size:30 final size:30
Alignment explanation
Indices: 98734025--98734125 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
98734015 GACAAGATTG
* * *
98734025 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
98734055 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
98734083 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
98734112 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98734126 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:98734137 original size:29 final size:28
Alignment explanation
Indices: 98734054--98734129 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
98734044 AAAATTGTAC
* *
98734054 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
98734082 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
98734111 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
98734130 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:98738204 original size:46 final size:46
Alignment explanation
Indices: 98738106--98738276 Score: 132
Period size: 46 Copynumber: 3.7 Consensus size: 46
98738096 GATGAGTGCT
* * *
98738106 AGTGTAAGACATGTCTGGGACATGCTTCGGCCTTGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGACGTAAGCC
* * *
98738152 AATGTAAGACATGTCTGGGACATGCATC-GACTACGAGA-GGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGACT-CGAGACGTA-AGCC
*** * ** * *
98738198 AGTGTAAGACTATGTCTAATACATGGCATC-AACTTAAGACATGAGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGACTCGAGACGTAAGCC
*
98738245 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
98738277 CACCTTACCC
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
45 5 0.05
46 42 0.43
47 42 0.43
48 9 0.09
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGACGTAAGCC
Found at i:98738222 original size:93 final size:94
Alignment explanation
Indices: 98738054--98738275 Score: 204
Period size: 93 Copynumber: 2.4 Consensus size: 94
98738044 ACATTTTGAG
* ** * **
98738054 AGCCATTGTAAGACCATGTCTAGGACATAACATCGGC-A-TTGA-GATGAGTGCTAGTGTAAGAC
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGAT-AGT-C-AGTGTAAGAC
** * ** * *
98738116 ATGTCTGGGACAT-GCTTCGGCCTTGAGACGTA
63 ATGTCTAAGACATGGCATC-AACTTAAGACATA
*
98738148 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGAGGATAGTCAGTGTAAGACTAT
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTCAGTGTAAGAC-AT
* *
98738211 GTCTAATACATGGCATCAACTTAAGACATG
65 GTCTAAGACATGGCATCAACTTAAGACATA
*
98738241 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCG
98738276 GCACCTTACC
Statistics
Matches: 104, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
92 16 0.15
93 45 0.43
94 34 0.33
95 9 0.09
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (94 bp):
AGCCAATGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTCAGTGTAAGACATG
TCTAAGACATGGCATCAACTTAAGACATA
Found at i:98745873 original size:46 final size:46
Alignment explanation
Indices: 98745782--98745899 Score: 132
Period size: 46 Copynumber: 2.5 Consensus size: 46
98745772 AGTGCTAGTA
* * *
98745782 TAAGACATGTTTGGGACATGCTTCGGCCTCGAGATGTAAGCCAGTG
1 TAAGACATGTTTGGGACATGCATCGGCCTCGAAAGGTAAGCCAGTG
*
98745828 TAAGACATGTTTGGGACATGCATCGG-CTACGAAAGG-ATAGTCAGTG
1 TAAGACATGTTTGGGACATGCATCGGCCT-CGAAAGGTA-AGCCAGTG
* *
98745874 TAAGACCATGTCTGAGACATGGCATC
1 TAAGA-CATGTTTGGGACAT-GCATC
98745900 AACTTGAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
45 3 0.05
46 42 0.68
47 12 0.19
48 5 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
TAAGACATGTTTGGGACATGCATCGGCCTCGAAAGGTAAGCCAGTG
Found at i:98750571 original size:17 final size:18
Alignment explanation
Indices: 98750529--98750577 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
98750519 AGTTGAAAAG
98750529 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
98750548 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
98750565 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
98750578 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:98751465 original size:40 final size:40
Alignment explanation
Indices: 98751399--98751565 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
98751389 AAATTGAATG
* * *
98751399 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
98751438 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
98751478 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
98751518 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
98751558 ATATCCGG
1 ATATCCGG
98751566 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:98758575 original size:17 final size:18
Alignment explanation
Indices: 98758533--98758581 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
98758523 AGTTGAAAAG
98758533 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
98758552 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
98758569 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
98758582 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:98759469 original size:40 final size:40
Alignment explanation
Indices: 98759403--98759569 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
98759393 AAATTGAATG
* * *
98759403 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
98759442 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
98759482 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
98759522 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
98759562 ATATCCGG
1 ATATCCGG
98759570 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:98767458 original size:40 final size:38
Alignment explanation
Indices: 98767322--98767463 Score: 144
Period size: 40 Copynumber: 3.7 Consensus size: 38
98767312 CCGCACCAAG
* * * *
98767322 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACAACTTGCAC-AAT
*
98767362 GCCTTCGGGTCTTAGCCCGGATA-A-AACTTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATACAACTTGCAC-AAT
* * *
98767399 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CAACTTGCACAA-T
*
98767439 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
98767464 ATTTCCAGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
37 33 0.38
38 2 0.02
39 2 0.02
40 51 0.58
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGTCTTAACCCGGATATACAACTTGCACAAT
Found at i:98767479 original size:40 final size:40
Alignment explanation
Indices: 98767354--98767502 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
98767344 ATCACGATTT
* **
98767354 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-AA--ACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* *
98767391 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * ***
98767431 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * *
98767471 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
98767503 CATTCAATTT
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
37 28 0.30
38 3 0.03
39 2 0.02
40 60 0.65
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
Found at i:98775460 original size:40 final size:40
Alignment explanation
Indices: 98775386--98775531 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
98775376 CCGCACCAAG
* * * * * *
98775386 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
98775426 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
98775466 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
98775506 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
98775532 TTTCAGCATA
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:98777710 original size:40 final size:40
Alignment explanation
Indices: 98777645--98777812 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
98777635 TCTACGGGAT
* *
98777645 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTC
**
98777684 TTAGATCGGATATAGCAACTCACACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTC
* * *
98777724 TTAGCCCGGATATAATC-ACT-AGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCA-CACAAATGCCTTCGGGTC
* * *
98777764 ATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTC
*
98777804 TTAGTCCGG
1 TTAGCCCGG
98777813 TTATCATCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
39 7 0.06
40 99 0.92
41 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTC
Found at i:98777755 original size:80 final size:79
Alignment explanation
Indices: 98777641--98777812 Score: 231
Period size: 80 Copynumber: 2.2 Consensus size: 79
98777631 AGTATCTACG
* * * *
98777641 GGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGATCGGATATAGCAACTC
1 GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAACTC
98777705 ACACAAATGCCTTC
66 ACACAAATGCCTTC
* * *
98777719 GGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAAC
1 GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAAC
*
98777783 TCGCACAAATGCCTTC
64 TCACACAAATGCCTTC
98777799 GGATCTTAGTCCGG
1 GGATCTTAG-CCGG
98777813 TTATCATCCG
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 3 0.04
79 4 0.05
80 73 0.90
81 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (79 bp):
GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAACTC
ACACAAATGCCTTC
Found at i:98778912 original size:38 final size:35
Alignment explanation
Indices: 98778853--98778970 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
98778843 TCAATCATGC
*
98778853 ACTGGGCCGTAACCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCG-AAGCCTTTTCATATTTCATATTT-AT--T
98778892 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
*
98778923 ACTGGGCCGATGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
98778954 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
98778971 ATTGTAAACG
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
31 47 0.62
33 2 0.03
34 1 0.01
36 1 0.01
38 16 0.21
39 9 0.12
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:98778914 original size:31 final size:31
Alignment explanation
Indices: 98778876--98778970 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
98778866 CCTTTTCATA
*
98778876 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
98778907 TTTCATATTTCATATTACTGGGCCGATGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98778938 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98778969 TT
1 TT
98778971 ATTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:98779213 original size:24 final size:24
Alignment explanation
Indices: 98779162--98779328 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
98779152 GCTTTATCAT
* *
98779162 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
98779187 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
98779211 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
98779234 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
98779258 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
98779282 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
98779306 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98779329 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:98779262 original size:71 final size:71
Alignment explanation
Indices: 98779161--98779328 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
98779151 TGCTTTATCA
*
98779161 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
98779225 AGCCCTTT
64 AGCCCTTT
* * **
98779233 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
98779298 CCCTTT
66 CCCTTT
98779304 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
98779329 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:98779403 original size:20 final size:20
Alignment explanation
Indices: 98779378--98779438 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
98779368 TTATGATTAC
98779378 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
98779398 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
98779418 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
98779438 A
1 A
98779439 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:98779513 original size:25 final size:25
Alignment explanation
Indices: 98779481--98779528 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98779471 ATACATAAAC
* * *
98779481 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98779506 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98779529 CATAGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98780718 original size:27 final size:26
Alignment explanation
Indices: 98780688--98780771 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
98780678 GGGCATATTC
* *
98780688 GTCATTTTACTATACAGGGGTATTACG
1 GTCACTTTACCATACAGGGGT-TTACG
* *
98780715 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCATAC-AGGGGTTTACG
*
98780742 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGG-TTTACG
98780769 GTC
1 GTC
98780772 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 4 0.08
27 41 0.82
28 5 0.10
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GTCACTTTACCATACAGGGGTTTACG
Found at i:98780788 original size:27 final size:27
Alignment explanation
Indices: 98780700--98780771 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
98780690 CATTTTACTA
98780700 TACAGGGG-TATTACGGTCACTTTACCC
1 TACAGGGGCT-TTACGGTCACTTTACCC
*
98780727 TACAAGGGCTTTACGGTCACTTTACCC
1 TACAGGGGCTTTACGGTCACTTTACCC
98780754 TACAGGGGCTTTACGGTC
1 TACAGGGGCTTTACGGTC
98780772 TTTTTACCTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (27 bp):
TACAGGGGCTTTACGGTCACTTTACCC
Found at i:98780863 original size:27 final size:27
Alignment explanation
Indices: 98780833--98780884 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
98780823 GTAAATCTAC
98780833 AAACCAAAAGTATTTC-AGTAATTTTGT
1 AAACCAAAAGTATTTCTA-TAATTTTGT
**
98780860 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAAGTATTTCTATAATTTT
98780885 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (27 bp):
AAACCAAAAGTATTTCTATAATTTTGT
Found at i:98780981 original size:54 final size:54
Alignment explanation
Indices: 98780923--98781062 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
98780913 TGTAAATCAG
*
98780923 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * *
98780977 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
98781031 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
98781063 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:98781060 original size:27 final size:27
Alignment explanation
Indices: 98780842--98781109 Score: 164
Period size: 27 Copynumber: 9.9 Consensus size: 27
98780832 CAAACCAAAA
* * * *
98780842 GTATTTCAGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTATAAATCAAGG
*
98780869 GTATTTCTA-TAATTTTTAGAAAGTCAAGG
1 GTATTT-TAGTAA-TTTTATAAA-TCAAGG
* * *
98780898 GTATTTCT-GTAACTTTGTAAATCAGGG
1 GTATTT-TAGTAATTTTATAAATCAAGG
* * **
98780925 GTATTTTGGTAATTTTACAAATTGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
** * * **
98780952 GTATTTCGGTAATTTCACAAGCCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* * *
98780979 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTAGTAATTTTATAAATC-AAGG
* * *
98781006 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* *
98781033 GTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
*** * *
98781060 GTAAAATAGTAATTCTGTAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
***
98781087 GTAAAATAGTAATTTTATAAATC
1 GTATTTTAGTAATTTTATAAATC
98781110 GACGGTAAAA
Statistics
Matches: 196, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.01
27 164 0.84
28 15 0.08
29 15 0.08
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAATCAAGG
Found at i:98781116 original size:27 final size:27
Alignment explanation
Indices: 98781040--98781332 Score: 306
Period size: 27 Copynumber: 10.9 Consensus size: 27
98781030 AGGGTATTTT
*
98781040 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
98781067 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
98781094 AGTAATTTTATAAATCGACGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
98781121 -GATAATTTTGTAAATCGAGGGTAAAAC
1 AG-TAATTTTGTAAATCGAGGGTAAAAC
* * *
98781148 AATAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
98781175 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
98781202 AGTAATTTAGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * * *
98781229 GGTAATTCTGTAAGTTGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
98781256 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTTTGTAAATCGA-GGGTAAAAC
* * *
98781283 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTTTGTAAATCGA-GGGTAAAAC
* * *
98781310 GGTAATTCTGTAAATTGAGGGTA
1 AGTAATTTTGTAAATCGAGGGTA
98781333 CTTTGGTAAT
Statistics
Matches: 231, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.01
27 226 0.98
28 2 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:98781332 original size:81 final size:81
Alignment explanation
Indices: 98781041--98781324 Score: 358
Period size: 81 Copynumber: 3.5 Consensus size: 81
98781031 GGGTATTTTA
* * *
98781041 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTTTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATA
*
98781106 AATC-GACGGTAAAACG
66 AATCAG-GGGTAAAACG
* * *
98781122 ATAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATA
* *
98781187 AATCAAGGGTAAAACA
66 AATCAGGGGTAAAACG
* * * ** *
98781203 GTAATTTAGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTTGAGGGTAAAAC-GATAATTATGT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTATAT
98781267 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
* * *
98781284 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAAT
1 GTAATTTTGTAAATCGA-GGGTAAAACAGTAATTCTGTAAAT
98781325 TGAGGGTACT
Statistics
Matches: 177, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 175 0.99
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATA
AATCAGGGGTAAAACG
Found at i:98781367 original size:54 final size:52
Alignment explanation
Indices: 98781321--98781424 Score: 129
Period size: 54 Copynumber: 2.0 Consensus size: 52
98781311 GTAATTCTGT
* * *
98781321 AAATTGAGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGTATTTCGGT-AATTTAC
* *
98781375 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGTATTTCGGTAATTT
98781425 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
52 5 0.11
53 17 0.39
54 22 0.50
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (52 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGTATTTCGGTAATTTAC
Found at i:98781425 original size:26 final size:26
Alignment explanation
Indices: 98781329--98781426 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
98781319 GTAAATTGAG
*
98781329 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAA-ACGAA
* *
98781356 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAA-CGAA
* * *
98781383 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCGGTAATTTTACAAACGAA
98781409 GGTATTTCGGTAATTTTA
1 GGTATTTCGGTAATTTTA
98781427 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
26 21 0.36
27 38 0.64
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAAACGAA
Found at i:98781432 original size:27 final size:26
Alignment explanation
Indices: 98781329--98781441 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
98781319 GTAAATTGAG
* *
98781329 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAA-ACTAA
* * *
98781356 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAA-CTAA
* *
98781383 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCGGTAATTTTACAAACTAA
*
98781409 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCGGTAATTTTA-CAAACTAA
*
98781436 AGTATT
1 GGTATT
98781442 CTAAACAGGG
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 21 0.30
27 50 0.70
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAAACTAA
Found at i:98792864 original size:40 final size:40
Alignment explanation
Indices: 98792773--98792918 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
98792763 GCTACTCGTT
* *
98792773 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
98792813 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
98792853 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
98792894 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98792919 CATCATTCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:98799328 original size:18 final size:19
Alignment explanation
Indices: 98799295--98799335 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
98799285 ATGTTCATAT
98799295 TTTTAAAATGATTTAATTA
1 TTTTAAAATGATTTAATTA
*
98799314 TTTTATAAT-ATTTAATTA
1 TTTTAAAATGATTTAATTA
98799332 TTTT
1 TTTT
98799336 TTGAAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTAAAATGATTTAATTA
Found at i:98799336 original size:19 final size:20
Alignment explanation
Indices: 98799292--98799336 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
98799282 ACCATGTTCA
98799292 TATTTTTAAAATGATTTAAT
1 TATTTTTAAAATGATTTAAT
*
98799312 TA-TTTTATAAT-ATTTAAT
1 TATTTTTAAAATGATTTAAT
98799330 TATTTTT
1 TATTTTT
98799337 TGAAAAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 12 0.52
20 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTTTTAAAATGATTTAAT
Found at i:98806302 original size:19 final size:19
Alignment explanation
Indices: 98806278--98806321 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
98806268 TTTTAGATTT
98806278 ATTTTA-TTTTAAGTTTTTA
1 ATTTTATTTTTAA-TTTTTA
98806297 ATTTTATTTTTAATTTTTA
1 ATTTTATTTTTAATTTTTA
*
98806316 CTTTTA
1 ATTTTA
98806322 AAAGTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTTATTTTTAATTTTTA
Found at i:98826856 original size:13 final size:13
Alignment explanation
Indices: 98826840--98826872 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98826830 TTTGATTAAA
*
98826840 TTAGTTAATTAGT
1 TTAGATAATTAGT
98826853 TTAGATAATTAGT
1 TTAGATAATTAGT
98826866 TTA-ATAA
1 TTAGATAA
98826873 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98832407 original size:27 final size:27
Alignment explanation
Indices: 98832373--98832557 Score: 255
Period size: 27 Copynumber: 6.9 Consensus size: 27
98832363 TGGATAAGTT
*
98832373 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
98832400 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
**
98832427 GTAGAATTATTGAAATA-CCTCTGTAGG
1 GTAGAATTACCGAAATACCCT-TGTAGG
* *
98832454 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
98832481 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
98832508 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
98832535 GTAAAATTACCGAGATACCCTTG
1 GTAGAATTACCGAAATACCCTTG
98832558 AGTAAAATTA
Statistics
Matches: 137, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 133 0.97
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:98832457 original size:54 final size:54
Alignment explanation
Indices: 98832373--98832557 Score: 282
Period size: 54 Copynumber: 3.4 Consensus size: 54
98832363 TGGATAAGTT
*
98832373 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
** *
98832427 GTAGAATTATTGAAATA-CCTCTGTAGGGTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCT-TGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* *
98832481 ATAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* *
98832535 GTAAAATTACCGAGATACCCTTG
1 GTAGAATTACCGAAATACCCTTG
98832558 AGTAAAATTA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.03
54 111 0.95
55 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Found at i:98832508 original size:81 final size:81
Alignment explanation
Indices: 98832373--98832554 Score: 285
Period size: 81 Copynumber: 2.2 Consensus size: 81
98832363 TGGATAAGTT
* * *
98832373 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
*
98832438 GAAATACCTCTGTAGG
66 GAAATACCCCTGTAGG
*
98832454 GTAGAATTACCGAAATACCCCTAT-AGGATAGAATTACCGAAATACCCTTGTAGGGTAGAATTAT
1 GTAGAATTACCGAAATACCCCTATAAGG-TAGAATTACCGAAATACCCCTGTAGGGTAGAATTAT
98832518 CGAAATACCCCTGTAGG
65 CGAAATACCCCTGTAGG
* *
98832535 GTAAAATTACCGAGATACCC
1 GTAGAATTACCGAAATACCC
98832555 TTGAGTAAAA
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 3 0.03
81 90 0.97
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
GAAATACCCCTGTAGG
Found at i:98840033 original size:27 final size:27
Alignment explanation
Indices: 98839978--98840176 Score: 247
Period size: 27 Copynumber: 7.4 Consensus size: 27
98839968 TAGATAAGTT
* *
98839978 GTAGAATTACCAAAATA-CCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
98840004 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
98840031 GTAAAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
98840058 GTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
98840085 ATAGAATTATCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
98840112 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
98840139 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
98840166 GTAAAATTACC
1 GTAGAATTACC
98840177 ATTTTGCCCC
Statistics
Matches: 152, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 16 0.11
27 136 0.89
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:98841173 original size:37 final size:37
Alignment explanation
Indices: 98841111--98841219 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
98841101 AGCTCAGACG
* * *
98841111 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
98841148 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98841185 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
98841220 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98841423 original size:48 final size:47
Alignment explanation
Indices: 98841366--98841500 Score: 216
Period size: 48 Copynumber: 2.8 Consensus size: 47
98841356 GCACATCGCC
98841366 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
98841414 TATATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATACATATCTCA
98841462 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATA
98841501 TGCATGCTCA
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 2 0.03
48 75 0.95
49 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (47 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:98841549 original size:47 final size:47
Alignment explanation
Indices: 98841470--98841663 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
98841460 CATACATATT
* * *
98841470 TCACATTAGCCATTCGGCTTTACCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
98841517 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
98841564 TCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * ***
98841611 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
98841658 TCACAT
1 TCACAT
98841664 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:98841595 original size:94 final size:93
Alignment explanation
Indices: 98841423--98841663 Score: 290
Period size: 94 Copynumber: 2.5 Consensus size: 93
98841413 ATATATATTT
* * *
98841423 CACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCATTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCATA-CTC--ACAT-TCATCACATTAGCCATTCG
*
98841486 GCTTTACCACATATATGCATGCTCACATTCAC
62 GCCTTACCACATATATGCATGCTCACATTCAC
*
98841518 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT-GTCCATTCGGC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACATTAG-CCATTCGGC
* * *
98841582 CTTATCACATATATGCATGTTCACATTCAT
64 CTTACCACATATATGCATGCTCACATTCAC
* * * *
98841612 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACAT
98841664 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
93 2 0.02
94 92 0.72
95 19 0.15
96 4 0.03
97 11 0.09
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATACTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGCTCACATTCAC
Found at i:98842096 original size:15 final size:15
Alignment explanation
Indices: 98842076--98842105 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98842066 GTAGGAAACA
98842076 ATAAAATAAAAAAAG
1 ATAAAATAAAAAAAG
98842091 ATAAAATAAAAAAAG
1 ATAAAATAAAAAAAG
98842106 CTTATCATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (15 bp):
ATAAAATAAAAAAAG
Found at i:98844298 original size:48 final size:48
Alignment explanation
Indices: 98844227--98845188 Score: 1645
Period size: 48 Copynumber: 20.0 Consensus size: 48
98844217 CAAGATAAAT
* *
98844227 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844275 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
98844323 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844371 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844419 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
98844467 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
98844515 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844563 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
98844611 AAATATATATGAGATATGTATATGTGGTAAAGCCTAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
98844659 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
98844707 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
98844755 AAATATATGTGCGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
98844803 AAATATATATGAGATATGTATATGTGGTAAAGCCTAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844851 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844899 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98844947 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
98844995 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98845043 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
98845091 AAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCAAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
98845139 AAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
98845187 AA
1 AA
98845189 TGTTGTAACA
Statistics
Matches: 866, Mismatches: 48, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 866 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:98845333 original size:37 final size:37
Alignment explanation
Indices: 98845233--98845339 Score: 162
Period size: 36 Copynumber: 2.9 Consensus size: 37
98845223 GGAAATATAT
* *
98845233 TCCGGGTGAGACCCGATGACTACGTGTGTAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
98845270 TCCGGGTAA-ACCCGATGACTAGGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
98845306 TCCGGGTAAGACCCGATGGCTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
98845340 TCGTCTGAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 34 0.54
37 29 0.46
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:98850128 original size:40 final size:40
Alignment explanation
Indices: 98850081--98850316 Score: 346
Period size: 40 Copynumber: 5.9 Consensus size: 40
98850071 ACCAGCATAT
* * * *
98850081 TGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
98850121 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98850161 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
98850201 TGCTCTTCGGGACTTAGTCCAGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
98850241 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
98850281 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCA
98850317 ATTCTCATGT
Statistics
Matches: 175, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:98851927 original size:48 final size:48
Alignment explanation
Indices: 98851800--98851936 Score: 188
Period size: 50 Copynumber: 2.8 Consensus size: 48
98851790 GCACATCGCC
*
98851800 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCA-A
* *
98851850 TATATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCG-CTTTACCACATATACATATCTCAA
98851898 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTC-GCTTTACCACATATA
98851937 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
48 34 0.44
49 4 0.05
50 40 0.51
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGCTTTACCACATATACATATCTCAA
Found at i:98851985 original size:47 final size:47
Alignment explanation
Indices: 98851906--98852099 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
98851896 CATACATATT
* * * *
98851906 TCACATTAGCCATTCAGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
98851953 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
98852000 TCACATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
98852047 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98852094 TCACAT
1 TCACAT
98852100 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:98854573 original size:48 final size:48
Alignment explanation
Indices: 98854446--98854582 Score: 188
Period size: 50 Copynumber: 2.8 Consensus size: 48
98854436 GCACATCGCC
*
98854446 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCA-A
* *
98854496 TATATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCG-CTTTACCACATATACATATCTCAA
98854544 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTC-GCTTTACCACATATA
98854583 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
48 34 0.44
49 4 0.05
50 40 0.51
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGCTTTACCACATATACATATCTCAA
Found at i:98854631 original size:47 final size:47
Alignment explanation
Indices: 98854552--98854745 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
98854542 CATACATATT
* * * *
98854552 TCACATTAGCCATTCAGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
98854599 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98854646 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
98854693 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98854740 TCACAT
1 TCACAT
98854746 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:98854672 original size:22 final size:22
Alignment explanation
Indices: 98854645--98854716 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
98854635 GCTCACATTC
98854645 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
98854667 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
98854691 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
98854714 ATC
1 ATC
98854717 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:98857840 original size:27 final size:26
Alignment explanation
Indices: 98857796--98857847 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
98857786 CTCGCTGCAA
*
98857796 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
98857823 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
98857848 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:98857912 original size:33 final size:32
Alignment explanation
Indices: 98857863--98857926 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
98857853 CTCGCTACAA
* *
98857863 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
98857896 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
98857927 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:98857940 original size:27 final size:26
Alignment explanation
Indices: 98857888--98857947 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
98857878 ACACATATAT
*
98857888 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
98857914 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
98857941 ATATCTG
1 ATATCTG
98857948 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:98859388 original size:6 final size:6
Alignment explanation
Indices: 98859377--98859457 Score: 53
Period size: 6 Copynumber: 13.7 Consensus size: 6
98859367 AATCCTCCTA
* *
98859377 TTTTAT TTTTAT TTTTA- -TTAAT TCTTAT TTTTAT TTTCT-T TCATTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT T--TTTAT
* * * *
98859424 TTTTAT TCTTAT TTTTCT TTTGAT TTTGAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
98859458 TAATGTTCTT
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
4 3 0.05
5 4 0.07
6 46 0.79
7 3 0.05
8 2 0.03
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:98859406 original size:16 final size:15
Alignment explanation
Indices: 98859379--98859439 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
98859369 TCCTCCTATT
*
98859379 TTATTTTTATTTTTA
1 TTATTCTTATTTTTA
98859394 TTAATTCTTATTTTTA
1 TT-ATTCTTATTTTTA
98859410 TT-TTCTTTCATTTATT-
1 TTATTC-TT-ATTT-TTA
98859426 TTATTCTTATTTTT
1 TTATTCTTATTTTT
98859440 CTTTTGATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
14 5 0.12
15 8 0.20
16 22 0.55
17 5 0.12
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (15 bp):
TTATTCTTATTTTTA
Found at i:98866188 original size:29 final size:29
Alignment explanation
Indices: 98866152--98866373 Score: 354
Period size: 29 Copynumber: 7.7 Consensus size: 29
98866142 ATAAACGATC
*** *
98866152 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
* *
98866181 TCGTACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
98866210 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
98866239 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
98866268 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
98866297 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
98866326 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
98866355 TCGCACACTTATTGCCATA
1 TCGCACACTTAGTGCCATA
98866374 CCTTCCAAGC
Statistics
Matches: 180, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 180 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:98866390 original size:87 final size:87
Alignment explanation
Indices: 98866152--98866400 Score: 320
Period size: 87 Copynumber: 2.9 Consensus size: 87
98866142 ATAAACGATC
*** * * * * ***
98866152 TCGCACACTTAGTGCCATGCGATTTAAGCTCGTACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCCCGCACA
98866217 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * ***
98866239 TCGCACACTTAGTGCCATATAATTTAAGTTTGCACACTTAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCCCGCACA
98866304 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* **
98866326 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTATTGCCATA-CCTTCCAAGCCCGCAC
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATT-CAAGCCCGCAC
98866390 ACTTAGTGCCA
65 ACTTAGTGCCA
98866401 ATCTTGTCAC
Statistics
Matches: 146, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
86 2 0.01
87 144 0.99
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.33
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCCCGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:98870091 original size:15 final size:15
Alignment explanation
Indices: 98870071--98870101 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98870061 AATGGCATGA
*
98870071 TTGAATAAGTTGAAT
1 TTGAATAAATTGAAT
98870086 TTGAATAAATTGAAT
1 TTGAATAAATTGAAT
98870101 T
1 T
98870102 GATATGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (15 bp):
TTGAATAAATTGAAT
Found at i:98872533 original size:45 final size:44
Alignment explanation
Indices: 98872330--98872539 Score: 174
Period size: 45 Copynumber: 4.6 Consensus size: 44
98872320 TCACTCGTGT
* * *
98872330 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAC--GA-GAC
* *
98872376 GAGCCAGTGTAAGACCATGTCTAGGACATGACATCGG-TATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCTA-CGAGAC
* * * *
98872422 AAGCTCTAGTGTAAGACATGTCTGGGCCATGCATTGGCT-CAAGAC
1 GAGC-C-AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
* * * *
98872467 GTAAGCTAGTGTAAGATATGTCTGGGACATGCATCAGCTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
*
98872513 GTGCCAGTGTAAGACCATGTCTGGGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGAC
98872540 GTGGCATTGG
Statistics
Matches: 131, Mismatches: 22, Indels: 23
0.74 0.12 0.13
Matches are distributed among these distances:
44 11 0.08
45 45 0.34
46 27 0.21
47 33 0.25
48 15 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
Found at i:98875529 original size:54 final size:54
Alignment explanation
Indices: 98875389--98875546 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
98875379 TATGATGACA
* * *
98875389 TGATACATGCTAGG-TCGGGGAGCTTGTGTATCCCCGTTGAGAAGCATGTTATTATG
1 TGATACATGCTAGGTTC-GGGAGCTTGTGTAGCCCCGTTGAGAGGC--GTGATTATG
* * * * * * *
98875445 TGGTACACGCTAGGTCCGGGAGGTTATGTAGCCCTGTTGAGAGGCGTGGTTATG
1 TGATACATGCTAGGTTCGGGAGCTTGTGTAGCCCCGTTGAGAGGCGTGATTATG
* *
98875499 TGATGCATGCTAGGTTCAGGAGCTTGTGTAGCCCCGTTGAGAGGCGTG
1 TGATACATGCTAGGTTCGGGAGCTTGTGTAGCCCCGTTGAGAGGCGTG
98875547 CTATGTTGTG
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 47 0.57
56 35 0.42
57 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.29
Consensus pattern (54 bp):
TGATACATGCTAGGTTCGGGAGCTTGTGTAGCCCCGTTGAGAGGCGTGATTATG
Found at i:98882772 original size:45 final size:45
Alignment explanation
Indices: 98882688--98882815 Score: 197
Period size: 45 Copynumber: 2.9 Consensus size: 45
98882678 CCGAATTCAT
* * * *
98882688 TCACCAGCATT-TCGCCTGCTGGGCTC-GAGGCCCAAATAATATC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
98882731 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
98882776 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
98882816 GTACTGTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 11 0.14
44 13 0.17
45 54 0.69
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:98888415 original size:19 final size:19
Alignment explanation
Indices: 98888391--98888427 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98888381 ATTAATAAGC
*
98888391 CATTTCAAACGACCATATA
1 CATTTCAAACAACCATATA
*
98888410 CATTTCTAACAACCATAT
1 CATTTCAAACAACCATAT
98888428 CCAAAAAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.27, G:0.03, T:0.30
Consensus pattern (19 bp):
CATTTCAAACAACCATATA
Found at i:98892227 original size:30 final size:30
Alignment explanation
Indices: 98892191--98892321 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
98892181 GACAAGATTG
* * * * *
98892191 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
98892221 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
98892249 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98892279 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98892308 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98892322 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:98892282 original size:58 final size:58
Alignment explanation
Indices: 98892191--98892321 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
98892181 GACAAGATTG
* * * * * *
98892191 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
98892249 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
98892308 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98892322 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:98900012 original size:30 final size:30
Alignment explanation
Indices: 98899976--98900106 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
98899966 GACAAGATTG
* * * * *
98899976 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
98900006 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
98900034 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98900064 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
98900093 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98900107 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:98900067 original size:58 final size:58
Alignment explanation
Indices: 98899976--98900106 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
98899966 GACAAGATTG
* * * * * *
98899976 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
98900034 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
98900093 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98900107 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:98907407 original size:40 final size:40
Alignment explanation
Indices: 98907322--98907472 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
98907312 AATTGAATGA
* * *
98907322 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
98907362 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
98907403 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
98907442 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
98907473 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:98907486 original size:40 final size:40
Alignment explanation
Indices: 98907359--98907488 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
98907349 ATGCTGGAAA
* * * *
98907359 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
98907399 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
98907439 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
98907479 TTATATCCGG
1 TTATATCCGG
98907489 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:98909010 original size:37 final size:37
Alignment explanation
Indices: 98908960--98909033 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
98908950 GGTTAAGGGT
* * * *
98908960 GTTAATTATATCCTAGAGGTGCTTTGTTCGAATCCCC
1 GTTAATTAAATCCTAGAGGTCCTCTGCTCGAATCCCC
98908997 GTTAATTAAATCCTAGAGGTCCTCTGCTCGAATCCCC
1 GTTAATTAAATCCTAGAGGTCCTCTGCTCGAATCCCC
98909034 CTACACTCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (37 bp):
GTTAATTAAATCCTAGAGGTCCTCTGCTCGAATCCCC
Found at i:98911392 original size:40 final size:40
Alignment explanation
Indices: 98911314--98911521 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
98911304 TGAATGATAC
* * *
98911314 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* * *
98911354 CCGAGCTAAGACCCGAAGGTATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
98911394 CCGGGCTAAGACCGGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
98911434 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
98911474 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98911514 CC-GGCTAA
1 CCGGGCTAA
98911522 ATTCTGAAGA
Statistics
Matches: 146, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.03
40 139 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:98913811 original size:40 final size:40
Alignment explanation
Indices: 98913755--98913922 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
98913745 CAATTGAATG
* * * *
98913755 ATATCCAGGTTAAGACCCGAAGGCAATTGTCCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
98913796 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
98913835 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
98913875 ATATCCGAGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
98913915 ATATCCGG
1 ATATCCGG
98913923 TTGTATCCGA
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
39 8 0.08
40 94 0.89
41 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:98916843 original size:22 final size:23
Alignment explanation
Indices: 98916794--98916843 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
98916784 GAGGACTAAA
98916794 GTGCTAATACAGAGAGCACGTGC
1 GTGCTAATACAGAGAGCACGTGC
* * * *
98916817 ATGCTAA-ATAGAGAGCACTTTC
1 GTGCTAATACAGAGAGCACGTGC
98916839 GTGCT
1 GTGCT
98916844 TAGAAATCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (23 bp):
GTGCTAATACAGAGAGCACGTGC
Found at i:98921616 original size:20 final size:20
Alignment explanation
Indices: 98921591--98921628 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98921581 GTTTATTTGC
*
98921591 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
98921611 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
98921629 TTTGGAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:98928790 original size:58 final size:57
Alignment explanation
Indices: 98928641--98928790 Score: 146
Period size: 57 Copynumber: 2.6 Consensus size: 57
98928631 ATCGTATAAC
* *
98928641 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAGAGGGGCTTTATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTATAACGTATACTCAGAGAGGCTTTATT
* * * *
98928698 AGGATTACCAATCCAGGCTAAA-CCATAATC-ATAACGTATGCTTA-AGAGG-TATTATAT
1 AGGATTACCAGTCCAGGCTAAATCC-T-TTCTATAACGTATACTCAGAGAGGCT-TTAT-T
* * *
98928755 CGAGATTACCCGTCCGGGCTAAATCCTTTCTATAAC
1 AG-GATTACCAGTCCAGGCTAAATCCTTTCTATAAC
98928791 AAGGTCAATG
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
55 1 0.01
56 10 0.13
57 38 0.51
58 24 0.32
59 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTCTATAACGTATACTCAGAGAGGCTTTATT
Found at i:98929371 original size:20 final size:20
Alignment explanation
Indices: 98929330--98929371 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
98929320 AGCACTTGTA
* *
98929330 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
98929350 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
98929370 TT
1 TT
98929372 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:98931492 original size:12 final size:12
Alignment explanation
Indices: 98931475--98931499 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98931465 ACATTGGTCT
98931475 AGCTTTTAACTC
1 AGCTTTTAACTC
98931487 AGCTTTTAACTC
1 AGCTTTTAACTC
98931499 A
1 A
98931500 TTGCTCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (12 bp):
AGCTTTTAACTC
Found at i:98940264 original size:135 final size:133
Alignment explanation
Indices: 98940069--98940310 Score: 358
Period size: 135 Copynumber: 1.8 Consensus size: 133
98940059 GCTCCAATGT
* *
98940069 AACTTCAAGGAGACAAGATCTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACG
1 AACTTCAAGGAGACAAGATCTGATATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGAC-
* * ** *
98940134 TGGGTAATTTTATCTTGCTCTACTGCAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTGTTTC
65 TGGCTAATTTGA-CCCGCTCTACTACAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTGTTTC
98940199 GTTGC
129 GTTGC
* * *
98940204 AACTTCAGGGAGGCACGATCTGATATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT
1 AACTTCAAGGAGACAAGATCTGATATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT
* *
98940269 TGCTACTTTGACCCGCTCTACTACAACTTCAGAGAGATAAGG
66 GGCTAATTTGACCCGCTCTACTACAACTTCAGAGAGATAAGG
98940311 TTTGCTATGA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
133 28 0.29
134 8 0.08
135 59 0.62
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (133 bp):
AACTTCAAGGAGACAAGATCTGATATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT
GGCTAATTTGACCCGCTCTACTACAACTTCAGAGAGATAAGGATTGTGGCTTCGATCTGTTTCGT
TGC
Found at i:98946992 original size:13 final size:13
Alignment explanation
Indices: 98946974--98946999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98946964 CACATTCTTG
98946974 AATTTTGTGCCCC
1 AATTTTGTGCCCC
98946987 AATTTTGTGCCCC
1 AATTTTGTGCCCC
98947000 TCTTCATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
AATTTTGTGCCCC
Found at i:98960211 original size:46 final size:46
Alignment explanation
Indices: 98960161--98960336 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98960151 TATTTGGGCA
98960161 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98960207 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98960254 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98960300 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98960337 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98960316 original size:93 final size:93
Alignment explanation
Indices: 98960157--98960328 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98960147 TGGATATTTG
* *
98960157 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98960222 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98960250 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98960315 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98960329 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98963305 original size:15 final size:15
Alignment explanation
Indices: 98963285--98963353 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98963275 GTATCTTGGG
98963285 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98963300 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98963315 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98963330 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98963345 TTTCTTTAT
1 TTTCTTTAT
98963354 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98963354 original size:30 final size:30
Alignment explanation
Indices: 98963276--98963363 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98963266 CATAGTATCG
* * * *
98963276 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98963306 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98963336 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98963364 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98965800 original size:46 final size:46
Alignment explanation
Indices: 98965747--98965922 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98965737 TATTTGGGCA
98965747 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98965793 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98965840 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98965886 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98965923 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98965902 original size:93 final size:93
Alignment explanation
Indices: 98965743--98965914 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98965733 GGGATATTTG
* *
98965743 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98965808 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98965836 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98965901 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98965915 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98972412 original size:40 final size:40
Alignment explanation
Indices: 98972310--98972492 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
98972300 AAATTGAATG
* * * * *
98972310 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
98972350 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98972390 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
98972430 AAATCC-GGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
98972469 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
98972493 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Done.