Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 342 of 444
Found at i:98976712 original size:25 final size:25
Alignment explanation
Indices: 98976665--98976713 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
98976655 TTGGCTTGAC
**
98976665 ATTTACTAAGCAATATCGGATATTT
1 ATTTACTAAGCAATATCAAATATTT
* *
98976690 ATTTATTAGGCAATATCAAATATT
1 ATTTACTAAGCAATATCAAATATT
98976714 CAAATTATTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTTACTAAGCAATATCAAATATTT
Found at i:98978774 original size:13 final size:13
Alignment explanation
Indices: 98978756--98978784 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
98978746 CTATCCGGGC
98978756 TAAATCCTTTCTA
1 TAAATCCTTTCTA
98978769 TAAATCCTTTCTA
1 TAAATCCTTTCTA
98978782 TAA
1 TAA
98978785 TGAGGCCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAATCCTTTCTA
Found at i:98983931 original size:34 final size:34
Alignment explanation
Indices: 98983892--98983961 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
98983882 CCCGTGTGAC
98983892 CCTAGGACACGCCCGTGCTACAGGCCGTGTTTGA
1 CCTAGGACACGCCCGTGCTACAGGCCGTGTTTGA
98983926 CCTAGGACACGCCCGTGCTACAGGCCGTGTTTGA
1 CCTAGGACACGCCCGTGCTACAGGCCGTGTTTGA
98983960 CC
1 CC
98983962 CCGTGTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (34 bp):
CCTAGGACACGCCCGTGCTACAGGCCGTGTTTGA
Found at i:98988884 original size:15 final size:15
Alignment explanation
Indices: 98988860--98988916 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
98988850 AATATATTTG
*
98988860 AAATAATTTAATATA
1 AAATATTTTAATATA
*
98988875 AAATATTTT-ATTTCA
1 AAATATTTTAATAT-A
*
98988890 AAATATAATTTAAAATA
1 AAATAT--TTTAATATA
98988907 AAATATTTTA
1 AAATATTTTA
98988917 TTTTAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.09
15 19 0.56
17 10 0.29
18 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATTTTAATATA
Found at i:98988908 original size:32 final size:32
Alignment explanation
Indices: 98988862--98988936 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
98988852 TATATTTGAA
*
98988862 ATAATTTAATATAAAATATTTTATTTCAAAAT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
* *
98988894 ATAATTTAAAATAAAATATTTTATTTTAAATT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
98988926 AT-A-TTAAAATA
1 ATAATTTAAAATA
98988937 TATGATGGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.20
31 1 0.03
32 31 0.77
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
ATAATTTAAAATAAAATATTTTATTTCAAAAT
Found at i:98991892 original size:16 final size:16
Alignment explanation
Indices: 98991864--98991934 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
98991854 GTTTGGTTCA
*
98991864 CTGTAATGAAATAGGG
1 CTGTAATGGAATAGGG
*
98991880 CTATAATGGAATAGGG
1 CTGTAATGGAATAGGG
* *
98991896 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGGG
*
98991912 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGGG
98991928 CTGTAAT
1 CTGTAAT
98991935 AAGTAATTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.06, G:0.30, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGGG
Found at i:98991969 original size:46 final size:44
Alignment explanation
Indices: 98991916--98992009 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
98991906 ATAGAGCTGT
* *
98991916 AATGGAATAGAGCTGTAATAAGTAATTC-AACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCTAA-TGTTTGGTTGAATGA
*
98991962 AATGGAATAGAACTGTAATAGTATTCTTATGTTTGGTTGAATGA
1 AATGGAATAGAACTGTAATAGTATTCTAATGTTTGGTTGAATGA
98992006 AATG
1 AATG
98992010 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 22 0.50
45 4 0.09
46 18 0.41
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTAATGTTTGGTTGAATGA
Found at i:98992192 original size:58 final size:58
Alignment explanation
Indices: 98992113--98992238 Score: 173
Period size: 58 Copynumber: 2.2 Consensus size: 58
98992103 TTTTAATAAG
* *
98992113 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAACATA
** * * *
98992171 ATTATTATTAAGTATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
98992229 ATTATTATTA
1 ATTATTATTA
98992239 TATGAATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 22 0.37
58 38 0.63
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:98992259 original size:58 final size:57
Alignment explanation
Indices: 98992100--98992266 Score: 171
Period size: 58 Copynumber: 2.9 Consensus size: 57
98992090 TATTGTTATT
* ** * *
98992100 AAATTTTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAACATA-ATTATTATTAAGTATAATTTAA-AAAAATAATATATAATTTAACA
* * *
98992158 ATATTTTAACATAATTATTATTAAGTATAATTTAATAAAATAATATATAATTTAATA
1 AAATTTTAACATAATTATTATTAAGTATAATTTAAAAAAATAATATATAATTTAACA
*
98992215 AAATTCTTAATATAATTATTATT-A-TATGAA-TTAAAAAATCATAATATATAAT
1 AAATT-TTAACATAATTATTATTAAGTAT-AATTTAAAAAA--ATAATATATAAT
98992267 ACTACAAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
56 10 0.11
57 25 0.27
58 57 0.61
59 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (57 bp):
AAATTTTAACATAATTATTATTAAGTATAATTTAAAAAAATAATATATAATTTAACA
Found at i:98999357 original size:24 final size:24
Alignment explanation
Indices: 98999330--98999406 Score: 154
Period size: 24 Copynumber: 3.2 Consensus size: 24
98999320 TGAAAAGGTA
98999330 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
98999354 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
98999378 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
98999402 AAAAG
1 AAAAG
98999407 CTTACACGTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (24 bp):
AAAAGGATTTTAAAGTGAATGAAG
Found at i:99000614 original size:2 final size:2
Alignment explanation
Indices: 99000607--99000636 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
99000597 TGCCGCTCAA
99000607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99000637 GTGTGATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99001741 original size:33 final size:30
Alignment explanation
Indices: 99001694--99001761 Score: 75
Period size: 33 Copynumber: 2.2 Consensus size: 30
99001684 AACTTCACAA
*
99001694 TATTATTTATTT-AAATTCAATCTAATATTAAT
1 TATTATTTATTTAAAATT-AAACTAATA-T-AT
*
99001726 TATTATGTTTTTTAAAATTAAACTAATATAT
1 TATTAT-TTATTTAAAATTAAACTAATATAT
99001757 TATTA
1 TATTA
99001762 AATTTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 7 0.22
32 7 0.22
33 13 0.41
34 5 0.16
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (30 bp):
TATTATTTATTTAAAATTAAACTAATATAT
Found at i:99002359 original size:13 final size:13
Alignment explanation
Indices: 99002341--99002367 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99002331 AAAATAGTCT
99002341 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
99002354 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
99002367 A
1 A
99002368 GAATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTTGTAGGTTAA
Found at i:99002418 original size:44 final size:44
Alignment explanation
Indices: 99002369--99002458 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
99002359 TAGGTTAAAG
* *
99002369 AATATTAAAATATCCTATACTAATCATAGTTTAAGTAAGAAACT
1 AATATTAAAATAACCTATACTAATCAGAGTTTAAGTAAGAAACT
* * * *
99002413 AATATTAAAATAACCTATACTAGTTAGAGTTTAAGTGATAAACT
1 AATATTAAAATAACCTATACTAATCAGAGTTTAAGTAAGAAACT
99002457 AA
1 AA
99002459 AAATAGAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (44 bp):
AATATTAAAATAACCTATACTAATCAGAGTTTAAGTAAGAAACT
Found at i:99016262 original size:24 final size:22
Alignment explanation
Indices: 99016224--99016283 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 22
99016214 TGTGTAAATT
99016224 ATATATATTAATTATGTCAA-AA
1 ATATATATTAATTAT-TCAACAA
99016246 ATATATATTAATTTTATTCAACAA
1 ATATATATTAA--TTATTCAACAA
*
99016270 A-ATATTTTTAATTA
1 ATATA-TATTAATTA
99016284 AAAATTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 14 0.42
23 7 0.21
24 12 0.36
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATATTAATTATTCAACAA
Found at i:99016428 original size:23 final size:23
Alignment explanation
Indices: 99016402--99016445 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
99016392 AATATTTCAA
99016402 TATTT-TTATAATAATT-AAAATAT
1 TATTTCTT-TAAT-ATTCAAAATAT
99016425 TATTTCTTTAATATTCAAAAT
1 TATTTCTTTAATATTCAAAAT
99016446 CAAACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.16
23 14 0.74
24 2 0.11
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTTCTTTAATATTCAAAATAT
Found at i:99016562 original size:27 final size:27
Alignment explanation
Indices: 99016529--99016600 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
99016519 TATTTAATGT
* *
99016529 TTAAAAAGTATGTCTTACATTTTTATAA
1 TTAAAAA-TACGTATTACATTTTTATAA
* *
99016557 TTAAAAATGCGTATTGCATTTTTATAA
1 TTAAAAATACGTATTACATTTTTATAA
99016584 TTAAAAATATC-TATTAC
1 TTAAAAATA-CGTATTAC
99016601 CAATTTCAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 29 0.78
28 8 0.22
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.44
Consensus pattern (27 bp):
TTAAAAATACGTATTACATTTTTATAA
Found at i:99020712 original size:23 final size:24
Alignment explanation
Indices: 99020677--99020723 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
99020667 ATGTTTCTTC
99020677 ATTGTTTATGCATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
99020701 ATTG-TTATGCATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
99020724 TTAATGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.53
Consensus pattern (24 bp):
ATTGTTTATGCATGTATGTTATGT
Found at i:99020721 original size:13 final size:13
Alignment explanation
Indices: 99020682--99020722 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
99020672 TCTTCATTGT
99020682 TTATGCATGTATG
1 TTATGCATGTATG
*
99020695 TTATG--TAT-TG
1 TTATGCATGTATG
99020705 TTATGCATGTATG
1 TTATGCATGTATG
99020718 TTATG
1 TTATG
99020723 TTTAATGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 7 0.30
11 2 0.09
12 2 0.09
13 12 0.52
ACGTcount: A:0.22, C:0.05, G:0.22, T:0.51
Consensus pattern (13 bp):
TTATGCATGTATG
Found at i:99020741 original size:25 final size:23
Alignment explanation
Indices: 99020682--99020734 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 23
99020672 TCTTCATTGT
*
99020682 TTATGCATGTATGTTATGTATTG
1 TTATGCATGTATGTTATGTAATG
99020705 TTATGCATGTATGTTATGTTTAATG
1 TTATGCATGTATGTTATG--TAATG
99020730 TTATG
1 TTATG
99020735 TTTGTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 18 0.67
25 9 0.33
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.53
Consensus pattern (23 bp):
TTATGCATGTATGTTATGTAATG
Found at i:99020826 original size:4 final size:4
Alignment explanation
Indices: 99020817--99020926 Score: 139
Period size: 4 Copynumber: 27.2 Consensus size: 4
99020807 TATTAATGTT
* * * *
99020817 TATG TATG TATG TATA TATG CATG TATA TATG TATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
99020865 TATG TATG TATG TATG TATG TACG TATG TATG TATG GATG GATG GATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
99020913 TATG TATG TTATG T
1 TATG TATG -TATG T
99020927 TTAGTACTGT
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
4 89 0.96
5 4 0.04
ACGTcount: A:0.26, C:0.03, G:0.25, T:0.45
Consensus pattern (4 bp):
TATG
Found at i:99022723 original size:3 final size:3
Alignment explanation
Indices: 99022715--99022769 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
99022705 AGCCATCTAA
99022715 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
99022763 TAT TAT T
1 TAT TAT T
99022770 TGCATTTAGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:99024317 original size:13 final size:14
Alignment explanation
Indices: 99024298--99024329 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
99024288 TGGATGGTTT
99024298 TATTTTGTTGGATG
1 TATTTTGTTGGATG
99024312 -ATTTTGTTGGATG
1 TATTTTGTTGGATG
99024325 TATTT
1 TATTT
99024330 CGATGATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (14 bp):
TATTTTGTTGGATG
Found at i:99034249 original size:40 final size:40
Alignment explanation
Indices: 99034122--99034251 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
99034112 ATGCTGGAAA
* *
99034122 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
99034162 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
99034202 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
99034242 TTATATCCGG
1 TTATATCCGG
99034252 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:99042201 original size:40 final size:40
Alignment explanation
Indices: 99042135--99042278 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
99042125 AAATTGAATG
* * *
99042135 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
99042174 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99042214 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
99042254 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
99042279 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99042299 original size:40 final size:40
Alignment explanation
Indices: 99042172--99042301 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
99042162 ATGCTGGAAA
* *
99042172 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
99042212 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
99042252 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
99042292 TTATATCCGG
1 TTATATCCGG
99042302 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:99046940 original size:43 final size:43
Alignment explanation
Indices: 99046882--99046967 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
99046872 GATATATGTG
* *
99046882 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA
1 GCATCTGAACTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
* *
99046925 GCATCTGAACTCGTTGAGTGGTTCGAGTTCATAATGGATGCGA
1 GCATCTGAACTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
99046968 TACATGTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
GCATCTGAACTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:99047385 original size:2 final size:2
Alignment explanation
Indices: 99047380--99047408 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
99047370 TATATATATA
99047380 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
99047409 ACATGTGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:99051396 original size:87 final size:86
Alignment explanation
Indices: 99051249--99051499 Score: 369
Period size: 87 Copynumber: 2.9 Consensus size: 86
99051239 AGATTAAAAT
** * *
99051249 TCAGTGAATTCATCAAGTCCGTCTCAATAAAACCACCCAAACTTTAGGATATGAGCTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGA-CACCCAAACTTTGGGATATGAGTTCATTAAGA
*
99051314 GTAAGAAACTTAACCTCACATG
65 GTAAGAAACTCAACCTCACATG
*
99051336 TCAGTGAATTCATCAAGTCCGTCTCAATAGGATCACTCAAACTTTGGGATATGAGTTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGA-CACCCAAACTTTGGGATATGAGTTCATTAAGA
*
99051401 GTAAGAAACTCAACCTCATATG
65 GTAAGAAACTCAACCTCACATG
* * *
99051423 TCGGTGAATTCATCAAGTCCGTCTCAATAGGACTACCCAAACTTTGGGCTATGAATTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGAC-ACCCAAACTTTGGGATATGAGTTCATTAAGA
*
99051488 GTAA-TAACTCAA
65 GTAAGAAACTCAA
99051500 TCTTATGCAT
Statistics
Matches: 150, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
86 8 0.05
87 142 0.95
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (86 bp):
TCAGTGAATTCATCAAGTCCGTCTCAATAGGACACCCAAACTTTGGGATATGAGTTCATTAAGAG
TAAGAAACTCAACCTCACATG
Found at i:99056495 original size:38 final size:38
Alignment explanation
Indices: 99056442--99056634 Score: 224
Period size: 38 Copynumber: 5.1 Consensus size: 38
99056432 AACTTTTAAT
* * * * *
99056442 ACACTGGCAATAAGCCAACTAGGCACTAAGCTTGAATA
1 ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
* * * *
99056480 ATACCGACACTAAGCCTACTAGGCATAAAACCTGAATA
1 ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
* *
99056518 ACACTGGCACTAAGCCTACTAGGCAAAAAGCCTGAATA
1 ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
* ** * *
99056556 ACGCCGGCACTAAGCCTGTTAGGCTCAAAGCCCGAATA
1 ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
* *
99056594 ACACCGGCACTAAGCCTGCTAGGCACAAAGCTTGAATA
1 ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
99056632 ACA
1 ACA
99056635 ATATAATTCA
Statistics
Matches: 129, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 129 1.00
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (38 bp):
ACACCGGCACTAAGCCTACTAGGCACAAAGCCTGAATA
Found at i:99058031 original size:27 final size:27
Alignment explanation
Indices: 99057993--99058052 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
99057983 GAGAAAATCT
* *
99057993 GAATAGATCACCTTCATGGTGTACTCG
1 GAATGGATCACCTTCATGGCGTACTCG
** *
99058020 GAATGGATCACCTTTGTGGCGTACTCT
1 GAATGGATCACCTTCATGGCGTACTCG
99058047 GAATGG
1 GAATGG
99058053 GTTGCCTTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (27 bp):
GAATGGATCACCTTCATGGCGTACTCG
Found at i:99064254 original size:20 final size:19
Alignment explanation
Indices: 99064229--99064285 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
99064219 TTACAAAAAT
*
99064229 AAAATTCAAAATAATTTTTA
1 AAAATTCAAAAT-ATTTATA
99064249 AAAATTCAAAATATTTATA
1 AAAATTCAAAATATTTATA
*
99064268 AAAATTCTAAA-ATTTATA
1 AAAATTCAAAATATTTATA
99064286 TTTTTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.20
19 16 0.46
20 12 0.34
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCAAAATATTTATA
Found at i:99064264 original size:19 final size:20
Alignment explanation
Indices: 99064229--99064280 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
99064219 TTACAAAAAT
*
99064229 AAAATTCAAAATAATTTTTA
1 AAAATTCAAAATAATTTATA
99064249 AAAATTCAAAAT-ATTTATA
1 AAAATTCAAAATAATTTATA
99064268 AAAATTCTAAAAT
1 AAAATTC-AAAAT
99064281 TTATATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATTCAAAATAATTTATA
Found at i:99064342 original size:20 final size:18
Alignment explanation
Indices: 99064288--99064333 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
99064278 AATTTATATT
99064288 TTTTGAAAAATTATAAAG
1 TTTTGAAAAATTATAAAG
99064306 TTTTGAAAAATTATAAAG
1 TTTTGAAAAATTATAAAG
99064324 TTTTGAAAAA
1 TTTTGAAAAA
99064334 AATTCTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (18 bp):
TTTTGAAAAATTATAAAG
Found at i:99069922 original size:19 final size:19
Alignment explanation
Indices: 99069898--99069934 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
99069888 AACATTAATT
*
99069898 TTTTTTAAAATTTAATATA
1 TTTTTTAAAATTAAATATA
99069917 TTTTTTAAAATTAAATAT
1 TTTTTTAAAATTAAATAT
99069935 TCAAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTTTAAAATTAAATATA
Found at i:99070160 original size:41 final size:41
Alignment explanation
Indices: 99070100--99070181 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
99070090 TTGAGATAGT
99070100 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTG
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTG
* *
99070141 TGATTATCTAATTTTATCTCATTTTAAAATCTAATAAATTG
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTG
99070182 GATGAGGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (41 bp):
TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTG
Found at i:99070473 original size:16 final size:18
Alignment explanation
Indices: 99070427--99070474 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 18
99070417 AAATGTCTAA
*
99070427 ATAATTATAACTAAAACT
1 ATAATTAGAACTAAAACT
*
99070445 A-AATTAGTA-TAAAA-T
1 ATAATTAGAACTAAAACT
99070460 ATAATTA-AACTAAAA
1 ATAATTAGAACTAAAA
99070475 ATTTAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
15 3 0.12
16 15 0.60
17 6 0.24
18 1 0.04
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.31
Consensus pattern (18 bp):
ATAATTAGAACTAAAACT
Found at i:99080816 original size:47 final size:48
Alignment explanation
Indices: 99080745--99080868 Score: 159
Period size: 47 Copynumber: 2.6 Consensus size: 48
99080735 TATCGTAAGC
*
99080745 CAGTGTAAGACCATGTTTGGGACATGGCATCAGC-ATCA-A-GACAAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCTATCAGATGA-AAGT
* *
99080791 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTATGAGATGATAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCTATCAGATGAAAGT
99080839 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
99080869 TGGCACCTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
46 17 0.25
47 32 0.47
48 17 0.25
49 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCTATCAGATGAAAGT
Found at i:99082577 original size:28 final size:28
Alignment explanation
Indices: 99082545--99082643 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99082535 GCAATAAGCC
*
99082545 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99082573 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99082601 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99082630 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99082644 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99089321 original size:19 final size:19
Alignment explanation
Indices: 99089277--99089321 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
99089267 GAGTAAACGG
*
99089277 AGTAAGCACTACAATGCTT
1 AGTAAGTACTACAATGCTT
99089296 AGTAAGTACTACAATGCTT
1 AGTAAGTACTACAATGCTT
99089315 AGTAAGT
1 AGTAAGT
99089322 TTTAAGCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AGTAAGTACTACAATGCTT
Found at i:99089832 original size:49 final size:49
Alignment explanation
Indices: 99089767--99090812 Score: 1799
Period size: 49 Copynumber: 21.4 Consensus size: 49
99089757 TTTACCACAT
* *
99089767 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99089816 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
99089865 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99089914 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99089963 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
99090012 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99090061 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99090110 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090159 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99090208 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090257 ATATACATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
99090305 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090354 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99090403 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99090452 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99090501 ATATACACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090550 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99090599 ATATATACACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090647 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99090696 ATATATGCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99090745 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99090794 ATATATATACACTTTCACA
1 ATATATACACACTTTCACA
99090813 AATTTTAATA
Statistics
Matches: 953, Mismatches: 42, Indels: 4
0.95 0.04 0.00
Matches are distributed among these distances:
48 93 0.10
49 860 0.90
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:99094661 original size:40 final size:40
Alignment explanation
Indices: 99094612--99095042 Score: 774
Period size: 40 Copynumber: 10.8 Consensus size: 40
99094602 CCAGCATGAT
* * *
99094612 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99094652 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99094692 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99094732 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99094772 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
99094812 TGCT-TTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
99094851 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
99094891 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
99094931 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99094971 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99095011 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
99095043 CTCAATTCTC
Statistics
Matches: 383, Mismatches: 7, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
39 38 0.10
40 345 0.90
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:99097102 original size:49 final size:49
Alignment explanation
Indices: 99097037--99097531 Score: 891
Period size: 49 Copynumber: 10.1 Consensus size: 49
99097027 TTTACCACAT
* *
99097037 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097086 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
99097135 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097184 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097233 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99097282 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097331 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99097380 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097429 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097478 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
99097527 ATATA
1 ATATA
99097532 CATACATCAC
Statistics
Matches: 426, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 426 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:99097180 original size:98 final size:98
Alignment explanation
Indices: 99097037--99098301 Score: 2109
Period size: 98 Copynumber: 13.2 Consensus size: 98
99097027 TTTACCACAT
*
99097037 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097102 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097135 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097200 ACATTCATCACATCGGCCATTAAGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99097233 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097298 ACATTCATCACATTGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99097331 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097396 ACATTCATCACATTGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097429 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097494 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
99097527 ----ATATACA---T---A--CATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097580 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
99097613 ----ATATACA---T---A--CATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097666 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
99097699 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097764 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097797 ATATACATACACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097861 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097894 ATATACA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATAT-CACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097956 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
99097989 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99098054 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99098087 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99098152 ACATTCATCACATTGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
99098185 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99098250 ACATTCACCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
99098283 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
99098302 AATTTTAATA
Statistics
Matches: 1129, Mismatches: 22, Indels: 32
0.95 0.02 0.03
Matches are distributed among these distances:
86 163 0.14
88 1 0.00
90 6 0.01
91 1 0.00
93 1 0.00
94 6 0.01
95 48 0.04
96 68 0.06
97 99 0.09
98 736 0.65
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (98 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:99097278 original size:147 final size:147
Alignment explanation
Indices: 99097037--99098301 Score: 2127
Period size: 147 Copynumber: 8.8 Consensus size: 147
99097027 TTTACCACAT
* *
99097037 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097102 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097167 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
*
99097184 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99097249 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097314 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
* *
99097331 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99097396 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097461 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
99097478 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT--ACA---T-
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097535 --A--CATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097596 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
99097613 --ATAT--ACA---T---A--CATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99097666 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097731 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
* *
99097748 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097813 ACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99097877 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
*
99097894 ATATACA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATAT-CACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097956 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99098021 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
99098038 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99098103 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
99098168 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
* *
99098185 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99098250 ACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
99098302 AATTTTAATA
Statistics
Matches: 1058, Mismatches: 32, Indels: 56
0.92 0.03 0.05
Matches are distributed among these distances:
123 28 0.03
125 5 0.00
127 3 0.00
128 1 0.00
130 1 0.00
131 3 0.00
133 5 0.00
135 150 0.14
137 5 0.00
139 3 0.00
140 1 0.00
142 1 0.00
143 24 0.02
144 81 0.08
145 80 0.08
146 79 0.07
147 588 0.56
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (147 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCAC
Found at i:99097549 original size:37 final size:37
Alignment explanation
Indices: 99097494--99097709 Score: 207
Period size: 37 Copynumber: 5.2 Consensus size: 37
99097484 ACACACTTTC
*
99097494 ACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ACATACATCACATCGGCCATTAGGCCTTATCACATAT
99097531 ACATACATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACATACATCACATCGGCCATTAGGCCTTATCAC--ATAT
99097570 ACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 --ACA---T---A--CATCACATCGGCCATTAGGCCTTATCACATAT
99097617 ACATACATCACATCGGCCATTAGGCCTTATCACATATAT
1 ACATACATCACATCGGCCATTAGGCCTTATCAC--ATAT
99097656 ACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 --ACA---T---A--CATCACATCGGCCATTAGGCCTTATCACATAT
99097703 ACATACA
1 ACATACA
99097710 CTTTCACATT
Statistics
Matches: 154, Mismatches: 1, Indels: 48
0.76 0.00 0.24
Matches are distributed among these distances:
37 62 0.40
39 10 0.06
41 6 0.04
42 2 0.01
44 2 0.01
45 6 0.04
47 10 0.06
49 56 0.36
ACGTcount: A:0.32, C:0.30, G:0.09, T:0.29
Consensus pattern (37 bp):
ACATACATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:99097608 original size:49 final size:49
Alignment explanation
Indices: 99097531--99098301 Score: 1079
Period size: 49 Copynumber: 16.1 Consensus size: 49
99097521 TATCACATAT
*
99097531 ACATACATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99097580 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACATAC-ATC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
** * *
99097626 ACA-TCGGC-CATTAGGCC-TTA-TCACATATATACACACT-T-T-CACA-TTCATC
1 ACATTCATCACA-TCGGCCATTAGGC-C-T-TAT-CACA-TATATACACACTT--TC
** * * *
99097675 ACA-TCGGC-CATTAGGCC--T------TATCACATATACATACACTTTC
1 ACATTCATCACA-TCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097715 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99097764 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097813 ACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99097861 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACA-ACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097909 ACATTCATCACATCGGCCATTAGGCCTTAT-ACATATAT-CACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99097956 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99098005 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99098054 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99098103 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
*
99098152 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99098201 ACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
* *
99098250 ACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
99098299 ACA
1 ACA
99098302 AATTTTAATA
Statistics
Matches: 660, Mismatches: 33, Indels: 58
0.88 0.04 0.08
Matches are distributed among these distances:
38 1 0.00
39 5 0.01
40 8 0.01
41 11 0.02
42 4 0.01
43 2 0.00
44 6 0.01
45 9 0.01
46 8 0.01
47 60 0.09
48 94 0.14
49 452 0.68
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.30
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTC
Found at i:99102718 original size:28 final size:28
Alignment explanation
Indices: 99102686--99102784 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99102676 GCAATAAGCC
*
99102686 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99102714 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99102742 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99102771 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99102785 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99107826 original size:94 final size:94
Alignment explanation
Indices: 99107665--99107850 Score: 345
Period size: 94 Copynumber: 2.0 Consensus size: 94
99107655 TATATCACCC
*
99107665 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATTATTTGAATAGTTAATTTTATAAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATAATTTGAATAGTTAATTTTATAAGTAGAG
99107730 TAAGTTCAATTCCATAAAATAATTTAAAA
66 TAAGTTCAATTCCATAAAATAATTTAAAA
* *
99107759 AATATTTCTTCCTGTATTTAGATGCTAACAAATCATAATTTGAATAGTTAATTTTATGAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATAATTTGAATAGTTAATTTTATAAGTAGAG
99107824 TAAGTTCAATTCCATAAAATAATTTAA
66 TAAGTTCAATTCCATAAAATAATTTAA
99107851 CTTCCCTATT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (94 bp):
AATATTTCTTCCTGTATCTAGATGCTAACAAATCATAATTTGAATAGTTAATTTTATAAGTAGAG
TAAGTTCAATTCCATAAAATAATTTAAAA
Found at i:99111453 original size:93 final size:93
Alignment explanation
Indices: 99111341--99111510 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
99111331 CCCATAAGCA
* *
99111341 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
99111406 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
99111434 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
99111499 GAGTTCGGATGC
66 GAGTTCGGATGC
99111511 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:99111507 original size:46 final size:46
Alignment explanation
Indices: 99111332--99111507 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
99111322 TGTAACCCGC
* * * *
99111332 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99111378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99111428 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99111471 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99111508 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99122685 original size:34 final size:33
Alignment explanation
Indices: 99122642--99122707 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
99122632 TAGCGATATC
99122642 AGTGAGGGCCTTAGCCCAATACAGTAGCAGTATT
1 AGTGAGGGCCTTAGCCCAATACAGTA-CAGTATT
* *
99122676 AGTGTGGGCCTTAGCCCAATTCAGTACAGTAT
1 AGTGAGGGCCTTAGCCCAATACAGTACAGTAT
99122708 CAGAAATGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 6 0.20
34 24 0.80
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (33 bp):
AGTGAGGGCCTTAGCCCAATACAGTACAGTATT
Found at i:99125031 original size:13 final size:13
Alignment explanation
Indices: 99125013--99125039 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99125003 ACTCAGAGTT
99125013 GTTTGTTTTCGCA
1 GTTTGTTTTCGCA
99125026 GTTTGTTTTCGCA
1 GTTTGTTTTCGCA
99125039 G
1 G
99125040 ATCATAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.26, T:0.52
Consensus pattern (13 bp):
GTTTGTTTTCGCA
Found at i:99125921 original size:33 final size:33
Alignment explanation
Indices: 99125870--99125964 Score: 104
Period size: 33 Copynumber: 2.8 Consensus size: 33
99125860 GAACAGTCTA
* *
99125870 AGCCTAAGCCCATATCAGTAGC-GATATCAGTAAG
1 AGCCTTAGCCCA-ATCAGTAGCAG-TATCAATAAG
* **
99125904 GGCCTTAGCCCAATCAGTAGCAGTATCAATGTG
1 AGCCTTAGCCCAATCAGTAGCAGTATCAATAAG
99125937 AGCCTTAGCCCAATTCAGTA-CAGTATCA
1 AGCCTTAGCCCAA-TCAGTAGCAGTATCA
99125965 GAAATGCATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 36 0.68
34 17 0.32
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (33 bp):
AGCCTTAGCCCAATCAGTAGCAGTATCAATAAG
Found at i:99126021 original size:23 final size:21
Alignment explanation
Indices: 99125987--99126028 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
99125977 GAGATCCTAC
*
99125987 CCATCCATCCTATGCACTCCACT
1 CCATCCAGCCTA--CACTCCACT
99126010 CCATCCAGCCTACACTCCA
1 CCATCCAGCCTACACTCCA
99126029 TGTGGGGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.24, C:0.50, G:0.05, T:0.21
Consensus pattern (21 bp):
CCATCCAGCCTACACTCCACT
Found at i:99135503 original size:21 final size:21
Alignment explanation
Indices: 99135464--99135503 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
99135454 CTGTGCTCAG
* *
99135464 AGGTTCGACAGTCTTGATGTA
1 AGGTTCGACAGTATCGATGTA
*
99135485 AGGTTCGATAGTATCGATG
1 AGGTTCGACAGTATCGATG
99135504 AGACTTTGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGTA
Found at i:99135610 original size:6 final size:6
Alignment explanation
Indices: 99135594--99135643 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
99135584 TGAGTCCATT
*
99135594 TATTT- TATTTC TATTTC TATTTC TATTTC TATTTT TATTT- TATTT-
1 TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC
99135639 TATTT
1 TATTT
99135644 TCCTTCATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
5 15 0.35
6 28 0.65
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (6 bp):
TATTTC
Found at i:99140264 original size:40 final size:40
Alignment explanation
Indices: 99140219--99140385 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
99140209 CGGAATATAA
99140219 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99140259 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99140299 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99140339 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99140378 CCGGATAT
1 CCGGATAT
99140386 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99140369 original size:80 final size:79
Alignment explanation
Indices: 99140219--99140385 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
99140209 CGGAATATAA
* *
99140219 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
99140284 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
99140299 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
99140361 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
99140378 CCGGATAT
1 CCGGATAT
99140386 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:99141233 original size:17 final size:19
Alignment explanation
Indices: 99141210--99141255 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
99141200 AAGAAGCATG
99141210 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
99141228 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
99141246 AATCATGCTC
1 AATCATGCTC
99141256 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:99148263 original size:40 final size:40
Alignment explanation
Indices: 99148218--99148383 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
99148208 CGGAATATAA
99148218 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99148258 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99148298 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99148337 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99148376 CCGGATAT
1 CCGGATAT
99148384 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99148340 original size:39 final size:38
Alignment explanation
Indices: 99148234--99148345 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
99148224 ATAATCACGT
* * *
99148234 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
99148274 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
99148313 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
99148346 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:99148367 original size:79 final size:78
Alignment explanation
Indices: 99148234--99148383 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
99148224 ATAATCACGT
*
99148234 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
99148299 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
99148313 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
99148376 CCGGATAT
64 CCGGATAT
99148384 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:99149231 original size:17 final size:19
Alignment explanation
Indices: 99149208--99149253 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
99149198 AAGAAGCATG
99149208 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
99149226 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
99149244 AATCATGCTC
1 AATCATGCTC
99149254 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:99150832 original size:17 final size:18
Alignment explanation
Indices: 99150790--99150838 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
99150780 AGTTGAAAAG
99150790 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
99150809 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
99150826 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
99150839 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:99151726 original size:40 final size:39
Alignment explanation
Indices: 99151660--99151825 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
99151650 AAATTGAATG
* * *
99151660 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
99151699 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
99151738 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
99151778 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
99151818 ATATCCGG
1 ATATCCGG
99151826 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:99164511 original size:40 final size:40
Alignment explanation
Indices: 99164466--99164632 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
99164456 CGGAATATAA
99164466 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99164506 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
99164546 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99164586 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99164625 CCGGATAT
1 CCGGATAT
99164633 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99164616 original size:80 final size:79
Alignment explanation
Indices: 99164466--99164632 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
99164456 CGGAATATAA
* *
99164466 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
99164531 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
99164546 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
99164608 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
99164625 CCGGATAT
1 CCGGATAT
99164633 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:99165481 original size:17 final size:19
Alignment explanation
Indices: 99165458--99165503 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
99165448 AAGAAGCATG
99165458 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
99165476 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
99165494 AATCATGCTC
1 AATCATGCTC
99165504 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:99169434 original size:16 final size:16
Alignment explanation
Indices: 99169413--99169444 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99169403 TATGTAACGC
*
99169413 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
99169429 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
99169445 TCTCAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:99170985 original size:29 final size:29
Alignment explanation
Indices: 99170953--99171058 Score: 83
Period size: 29 Copynumber: 3.7 Consensus size: 29
99170943 GTATGTGATA
*
99170953 TGGGCTTAATGGGCCATATGAATATGAAT
1 TGGGCCTAATGGGCCATATGAATATGAAT
** * *
99170982 TGGGCCTGGTGGGCTATATGAATGTGAAT
1 TGGGCCTAATGGGCCATATGAATATGAAT
** * *
99171011 TGGGCCCGACGGGCTATATG-A-ATGAGAT
1 TGGGCCTAATGGGCCATATGAATATGA-AT
*
99171039 TGGGCC-AAGTGGACCATATG
1 TGGGCCTAA-TGGGCCATATG
99171059 CATGTATGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
27 4 0.06
28 17 0.27
29 41 0.66
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATGAATATGAAT
Found at i:99173120 original size:27 final size:28
Alignment explanation
Indices: 99173064--99173133 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
99173054 AAATTTGTAC
99173064 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99173092 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99173119 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
99173134 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:99181045 original size:27 final size:28
Alignment explanation
Indices: 99180989--99181058 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
99180979 AAATTTGTAC
99180989 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99181017 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99181044 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
99181059 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:99189147 original size:12 final size:12
Alignment explanation
Indices: 99189130--99189155 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99189120 TGACCGCACC
99189130 CCCTAACCAAAG
1 CCCTAACCAAAG
99189142 CCCTAACCAAAG
1 CCCTAACCAAAG
99189154 CC
1 CC
99189156 ACGTTACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.46, G:0.08, T:0.08
Consensus pattern (12 bp):
CCCTAACCAAAG
Found at i:99192809 original size:21 final size:18
Alignment explanation
Indices: 99192765--99192814 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
99192755 CCAGTAATTG
99192765 GCCAAGGTGGTGCTCAGCC
1 GCCAAGG-GGTGCTCAGCC
*
99192784 ACCAAGGGGTGCTCAGCTGCC
1 GCCAAGGGGTGCTCA---GCC
99192805 GCCAAGGGGT
1 GCCAAGGGGT
99192815 CGTGGGCAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
21 12 0.46
ACGTcount: A:0.18, C:0.30, G:0.38, T:0.14
Consensus pattern (18 bp):
GCCAAGGGGTGCTCAGCC
Found at i:99195489 original size:25 final size:25
Alignment explanation
Indices: 99195461--99195539 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
99195451 ACTCGGCCCT
*
99195461 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
99195486 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
99195508 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
99195533 ATCACAT
1 ATCACAT
99195540 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:99195717 original size:49 final size:49
Alignment explanation
Indices: 99195411--99195824 Score: 618
Period size: 47 Copynumber: 8.7 Consensus size: 49
99195401 CCCTTCGGGA
* * * *
99195411 CTTATCACAT-T-TATACACTTTCACA-TCTATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
* * *
99195458 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99195505 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99195552 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99195599 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99195645 CTTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99195694 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99195743 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99195792 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
99195825 GCATAAAATC
Statistics
Matches: 346, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 9 0.03
47 172 0.50
48 38 0.11
49 127 0.37
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99199895 original size:40 final size:40
Alignment explanation
Indices: 99199544--99199888 Score: 564
Period size: 40 Copynumber: 8.6 Consensus size: 40
99199534 CCAGCATGAT
* * *
99199544 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
99199584 TGCTCTTCGGGACTTAGTCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99199624 TGCTCTTCGGAACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99199664 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
99199704 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
99199744 TGCTCTTTGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99199784 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
99199824 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
99199864 TGCTCTTCGGGATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
99199889 TGTCACTCTC
Statistics
Matches: 285, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 285 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:99201386 original size:25 final size:25
Alignment explanation
Indices: 99201358--99201436 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
99201348 CACTCGCCCT
*
99201358 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
99201383 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
99201405 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
99201430 ATCACAT
1 ATCACAT
99201437 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:99201576 original size:49 final size:47
Alignment explanation
Indices: 99201309--99201953 Score: 930
Period size: 49 Copynumber: 13.7 Consensus size: 47
99201299 CCCTTCGGGA
* * * ** * *
99201309 CTTATCACATTTATACACTTTCACATCCATCACGTTTGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
99201355 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201402 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99201449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201496 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201543 CTTATCACATATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99201592 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201638 CTTATCACATATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
99201687 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201736 CTTATCACATATATACACTTTCACATTCATCACAACGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201783 CTTATCACATATATACACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
**
99201832 CTTATCAC--ATAT--A---TCACATTCATCTTATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99201872 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99201921 CTTATCTCATATATATACACATTCACATTCATC
1 CTTA--TCACATATATACACTTTCACATTCATC
99201954 GCATAAAATC
Statistics
Matches: 551, Mismatches: 29, Indels: 35
0.90 0.05 0.06
Matches are distributed among these distances:
40 32 0.06
43 1 0.00
44 4 0.01
46 73 0.13
47 211 0.38
48 10 0.02
49 217 0.39
51 3 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99201752 original size:240 final size:240
Alignment explanation
Indices: 99201309--99201953 Score: 1010
Period size: 240 Copynumber: 2.7 Consensus size: 240
99201299 CCCTTCGGGA
* * * * * *
99201309 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTTGCCACT-CGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATAC
* * *
99201371 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACCTTCACATTCATCA
66 AC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
99201434 CATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
130 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
99201497 TTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
195 TTATCACATATATACACCTTCACATTCATCACAACGGCCATTAGGC
* *
99201543 CTTATCACATATATATACACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATAC
99201608 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
99201673 ATCGGGCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
131 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
99201738 TATCACATATATACACTTTCACATTCATCACAACGGCCATTAGGC
196 TATCACATATATACACCTTCACATTCATCACAACGGCCATTAGGC
*
99201783 CTTATCACATATATACACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCAC--ATAT--
1 CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATAC
**
99201844 A--TCACATTCATCTTATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
* * *
99201907 ATCGGCCATTCGGCCTTATCTCATATATATACACATTCACATTCATC
131 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
99201954 GCATAAAATC
Statistics
Matches: 381, Mismatches: 23, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
234 113 0.30
235 1 0.00
236 61 0.16
237 19 0.05
238 49 0.13
240 138 0.36
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (240 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATAC
ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATCACATATATACACCTTCACATTCATCACAACGGCCATTAGGC
Found at i:99201884 original size:89 final size:89
Alignment explanation
Indices: 99201756--99201934 Score: 295
Period size: 89 Copynumber: 2.0 Consensus size: 89
99201746 ATATACACTT
99201756 TCACATTCATCACAACGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
1 TCACATTCATCACAACGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
*
99201821 TGCCATTAGGCCTTATCACATATA
66 GGCCATTAGGCCTTATCACATATA
** * *
99201845 TCACATTCATCTTATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACAACGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
* *
99201910 GGCCATTCGGCCTTATCTCATATA
66 GGCCATTAGGCCTTATCACATATA
99201934 T
1 T
99201935 ATACACATTC
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (89 bp):
TCACATTCATCACAACGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATA
Found at i:99206925 original size:8 final size:8
Alignment explanation
Indices: 99206912--99206946 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
99206902 GTAGATCGAC
99206912 AAAAGTCG
1 AAAAGTCG
99206920 AAAAGTCG
1 AAAAGTCG
* *
99206928 AAATGCCG
1 AAAAGTCG
99206936 AAAAGTCG
1 AAAAGTCG
99206944 AAA
1 AAA
99206947 GTTTGGCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.11
Consensus pattern (8 bp):
AAAAGTCG
Found at i:99207212 original size:29 final size:29
Alignment explanation
Indices: 99207180--99207276 Score: 117
Period size: 29 Copynumber: 3.4 Consensus size: 29
99207170 TTGGGCTTAA
99207180 TGGGCCATATGAATATGAATTGGGCCTGG
1 TGGGCCATATGAATATGAATTGGGCCTGG
* * * *
99207209 TGGGCTATATGAATGTGAATTGGGCTTGA
1 TGGGCCATATGAATATGAATTGGGCCTGG
**
99207238 TGGGCCATATG-A-ATGAGATTGGGCCAAG
1 TGGGCCATATGAATATGA-ATTGGGCCTGG
99207266 TGGGCCATATG
1 TGGGCCATATG
99207277 CACGTATGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
27 3 0.05
28 19 0.33
29 35 0.61
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (29 bp):
TGGGCCATATGAATATGAATTGGGCCTGG
Found at i:99209224 original size:30 final size:30
Alignment explanation
Indices: 99209190--99209250 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
99209180 TCCTTAACTC
99209190 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
99209220 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
99209250 A
1 A
99209251 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:99211945 original size:27 final size:27
Alignment explanation
Indices: 99211914--99211999 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 27
99211904 CATAAGTTAG
99211914 ATATTTATAAGTTTATTATATATATAT
1 ATATTTATAAGTTTATTATATATATAT
* *
99211941 ATATTCTCA-ATGTTTAAGTATATATATAT
1 ATATT-T-ATAAGTTT-ATTATATATATAT
99211970 ATATATTAT-A-TTATATTATATA-ATAAT
1 ATAT-TTATAAGTT-TATTATATATAT-AT
99211997 ATA
1 ATA
99212000 AAAACAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
26 2 0.04
27 19 0.40
28 8 0.17
29 18 0.38
30 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.51
Consensus pattern (27 bp):
ATATTTATAAGTTTATTATATATATAT
Found at i:99222319 original size:5 final size:5
Alignment explanation
Indices: 99222309--99222353 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
99222299 TTTTTCTTGC
99222309 AATTT AATTT AATTT AATTT AATTT --TTT -ATTT -A-TT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT
99222354 TTTCTTTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 5 0.14
4 5 0.14
5 27 0.73
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
AATTT
Found at i:99225419 original size:55 final size:55
Alignment explanation
Indices: 99225288--99225419 Score: 126
Period size: 55 Copynumber: 2.4 Consensus size: 55
99225278 GCCGTGGGCG
* * * * * ***
99225288 AACCTGCCAAAACAACACGGGTATTCA-ACACGCCTGTGTCTAGAACCCGTGGCCA
1 AACCTGTCAAATCAACACGGGCA-TGAGACACGCCCGTGTCTAGAACCCGTAAACA
* *
99225343 AACCTGTCAAATCAACCCGGGCATGAGACACGCCCGTGTCTAGCACCCGTAAAC-
1 AACCTGTCAAATCAACACGGGCATGAGACACGCCCGTGTCTAGAACCCGTAAACA
99225397 AACACTGTCAAAAT-AACACGGGC
1 AAC-CTGTC-AAATCAACACGGGC
99225420 GTGTGCAGAG
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
54 5 0.08
55 54 0.86
56 4 0.06
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.15
Consensus pattern (55 bp):
AACCTGTCAAATCAACACGGGCATGAGACACGCCCGTGTCTAGAACCCGTAAACA
Found at i:99230621 original size:48 final size:48
Alignment explanation
Indices: 99230550--99230927 Score: 254
Period size: 48 Copynumber: 7.9 Consensus size: 48
99230540 TAAATTGTCT
* * *
99230550 ATGCCATGCCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * *** * **
99230598 ATGCCATGTCCCGGACATGGTCTTACACTTGCTCTTGTCTCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * * * *** *
99230646 ATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * **
99230694 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
** * * * *
99230742 ATTTCATGTCCTAGACATGGCCTTACACTAGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * ** *** * *
99230790 ATGCCATGTCCCAAACATGATCTTACATTATTTCTTGTTTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * * * * * **
99230838 CTGCCATGTTCCAAACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATATCAAGGCCG
* * *
99230886 ATGCCATGTCCTAGAGATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
99230928 CCCAATTGTC
Statistics
Matches: 238, Mismatches: 90, Indels: 4
0.72 0.27 0.01
Matches are distributed among these distances:
47 3 0.01
48 234 0.98
49 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:99230714 original size:96 final size:96
Alignment explanation
Indices: 99230564--99230914 Score: 319
Period size: 96 Copynumber: 3.7 Consensus size: 96
99230554 CATGCCCCAG
** * *
99230564 ACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACATGGTCTTACACTTG
1 ACATGGTCTTACACTGGCTCACAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTTG
*
99230629 CTCTTGTCTCAATACCGATGCCATGTTCAAA
66 CTCTTGTATCAATACCGATGCCATGTTCAAA
* * * * * *
99230660 ACATGGTCTTACACTGGCTCTCAAATTGTGGTCGATGCCATGTCCCAGACATGGTCTTACAGTAG
1 ACATGGTCTTACACTGGCTCACAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTTG
* *** * ** * * *
99230725 CACACATATCAACACCGATTTCATGTCCTAG
66 CTCTTGTATCAATACCGATGCCATGTTCAAA
* * ** * *
99230756 ACATGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA-TTA
1 ACATGGTCTTACACTGGCTCACAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTT-
** * * * *
99230820 TTTCTTGTTTCAATGCCGCTGCCATGTTCCAA
65 GCTCTTGTATCAATACCGATGCCATGTTCAAA
* * * * * *
99230852 ACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCGATGCCATGTCCTAGAGATGGTCTTACACT
1 ACATGGTCTTACACTGGCTCAC-AAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACT
99230915 AGCACACATA
Statistics
Matches: 193, Mismatches: 59, Indels: 5
0.75 0.23 0.02
Matches are distributed among these distances:
95 1 0.01
96 189 0.98
97 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (96 bp):
ACATGGTCTTACACTGGCTCACAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTTG
CTCTTGTATCAATACCGATGCCATGTTCAAA
Found at i:99230814 original size:144 final size:144
Alignment explanation
Indices: 99230550--99230816 Score: 327
Period size: 144 Copynumber: 1.9 Consensus size: 144
99230540 TAAATTGTCT
* * * ** *
99230550 ATGCCATGCCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACA
1 ATGCCATGCCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* * *** * * *
99230615 TGGTCTTACACTTGCTCTTGTCTCAATACCGATGCCATGTTCAAAACATGGTCTTACACTGGCTC
66 TGGCCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCAAAACATGATCTTACACTGGCTC
99230680 TCAAATTGTGGTCG
131 TCAAATTGTGGTCG
* * ** *
99230694 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTTCATGTCCTAGACA
1 ATGCCATGCCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* * * *
99230759 TGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA
66 TGGCCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCAAAACATGATCTTACA
99230817 TTATTTCTTG
Statistics
Matches: 100, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
144 100 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
ATGCCATGCCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
TGGCCTTACACTAGCTCACATCTCAAGACCGATGCCATGTCCAAAACATGATCTTACACTGGCTC
TCAAATTGTGGTCG
Found at i:99230890 original size:192 final size:192
Alignment explanation
Indices: 99230562--99230927 Score: 545
Period size: 192 Copynumber: 1.9 Consensus size: 192
99230552 GCCATGCCCC
* * ** *
99230562 AGACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACATGGTCTTACACT
1 AGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGATCTTACACT
* *
99230627 TGCTCTTGTCTCAATACCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGT
66 TGCTCTTGTCTCAATACCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAAATGTGGC
*
99230692 CGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTTCATGTCCT
131 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTTCATGTCCT
*
99230754 AGACATGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA-T
1 AGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGATCTTACACT
** * * * * * *
99230818 TATTTCTTGTTTCAATGCCGCTGCCATGTTCCAAACATTGTCTTACAGTGGCTCTCAAAATGTGG
66 T-GCTCTTGTCTCAATACCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAAATGTGG
* *
99230883 CCGATGCCATGTCCTAGAGATGGTCTTACACTAGCACACATATCA
130 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
99230928 CCCAATTGTC
Statistics
Matches: 154, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
191 2 0.01
192 152 0.99
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (192 bp):
AGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGATCTTACACT
TGCTCTTGTCTCAATACCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAAATGTGGC
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTTCATGTCCT
Found at i:99232743 original size:24 final size:24
Alignment explanation
Indices: 99232698--99232743 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
99232688 TGCATTATGG
**
99232698 AAGGAAAATAAAGAAATGAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAAA
* *
99232722 AAGGAAAATGATGAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAA
99232744 GAGTGTGGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAGGAAAATAAAGAAAAAAAAAAA
Found at i:99234064 original size:29 final size:29
Alignment explanation
Indices: 99234031--99234190 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
99234021 GTGACGAGAT
99234031 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99234060 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99234089 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
99234118 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
99234147 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
99234176 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
99234191 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:99238004 original size:2 final size:2
Alignment explanation
Indices: 99237997--99238030 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
99237987 TGACCTTAAG
99237997 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99238031 GATAGTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99243714 original size:15 final size:15
Alignment explanation
Indices: 99243682--99243710 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99243672 ATTTTCTGTG
99243682 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
99243697 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
99243711 ATTTTTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:99246064 original size:2 final size:2
Alignment explanation
Indices: 99246057--99246082 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
99246047 TGACCTTAAG
99246057 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
99246083 GATAGTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99246411 original size:2 final size:2
Alignment explanation
Indices: 99246404--99246436 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
99246394 TGAGTTGGTG
99246404 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
99246437 CACACACAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99251267 original size:37 final size:36
Alignment explanation
Indices: 99251217--99251301 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 36
99251207 TTTTTGGTTT
*
99251217 GATTAGCTCTTATGGGAA-TTTGGCATGTTA-CTAGTTG
1 GATTAGCTCTTAT--GAACTTCGGCATGTTATCT-GTTG
*
99251254 GATTAGCTCTTATGAACGTTCGGCGTGTTATCTGTTG
1 GATTAGCTCTTATGAAC-TTCGGCATGTTATCTGTTG
99251291 GATTAGCTCTT
1 GATTAGCTCTT
99251302 GTAAGCGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
35 3 0.07
37 38 0.88
38 2 0.05
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (36 bp):
GATTAGCTCTTATGAACTTCGGCATGTTATCTGTTG
Found at i:99253974 original size:24 final size:24
Alignment explanation
Indices: 99253947--99254153 Score: 369
Period size: 24 Copynumber: 8.6 Consensus size: 24
99253937 CTTATTATGT
* * *
99253947 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
99253971 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
99253995 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
99254019 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
99254043 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
99254067 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
99254091 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
99254115 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
99254139 TCGCACACATAGTGC
1 TCGCACACATAGTGC
99254154 ATTTGAGATA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 179 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:99254610 original size:2 final size:2
Alignment explanation
Indices: 99254603--99254630 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
99254593 TGGGCATACT
99254603 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99254631 CATACCCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:99256048 original size:45 final size:45
Alignment explanation
Indices: 99255997--99256340 Score: 395
Period size: 45 Copynumber: 7.6 Consensus size: 45
99255987 TACTAGAAAT
* * ** *
99255997 GAGTAAGATCATGACTTAAAGACGTTATGAAATCACTATTTTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * ** * *
99256042 GAGTAAGACCATGGA-TAAAAGATGTTGGGGCATCATTATTCTATT
1 GAGTAAGACCAT-GACTGAAAGACGTTATGGCATCACTATTCTATC
* *
99256087 GAATAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * *
99256132 GAGTAAGACCATGATTGAAAGAAGTTATGGCATCACTACTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * *
99256177 GAGTAATACCATGACTAAAAGACGTTATGGCATCACAATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * *
99256222 GAGTAAGACCATGACTGAAAGACATTATGGCATCACGATTCTGTC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* ** * *
99256267 GAGTAAGACCATGACTGAAAGACATTATGGCATCAGGATCCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
99256312 GAGTAAGACCAT-AGCTAAAAGACGATATG
1 GAGTAAGACCATGA-CTGAAAGACGTTATG
99256341 ATATCATAAA
Statistics
Matches: 258, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
44 3 0.01
45 253 0.98
46 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
Found at i:99256364 original size:135 final size:135
Alignment explanation
Indices: 99256087--99256388 Score: 358
Period size: 135 Copynumber: 2.2 Consensus size: 135
99256077 TTATTCTATT
** * *
99256087 GAATAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATCGAGTAAGACCATGATTGAAA
1 GAATAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
* * * * **
99256152 GAAGTTATGGCATCACTACTCTATCGAGTAATACCATGACTAAAAGACGTTATGGCATCACAATT
66 GAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAAGACGATATGACATCACAAAG
* *
99256217 CTATC
131 CAAAC
* *
99256222 GAGTAAGACCATGACTGAAAGACATTATGGCATCACGATTCTGTCGAGTAAGACCATGACTGAAA
1 GAATAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
* * * *
99256287 GACA-TTATGGCATCAGGA-TCCTATTGAGTAAGACCAT-AGCTAAAAGACGATATGATATCATA
66 GA-AGTTATGGCATCACGACT-CTATCGAGTAAGACCATGA-CTAAAAGACGATATGACATCACA
*
99256349 AAGCAAAG
128 AAGCAAAC
** *
99256357 GAATAAGACCATGGTTGAAAGACACTATGGCA
1 GAATAAGACCATGACTGAAAGACATTATGGCA
99256389 CATTCTGATC
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
134 2 0.01
135 138 0.98
136 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (135 bp):
GAATAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
GAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAAGACGATATGACATCACAAAG
CAAAC
Found at i:99260775 original size:26 final size:27
Alignment explanation
Indices: 99260698--99260776 Score: 101
Period size: 26 Copynumber: 3.0 Consensus size: 27
99260688 ACACACCAAT
* *
99260698 ATCGCAACAAAGCTGCTAGTAATCA-T-
1 ATCGCAGCAAAGCTGCCAGT-ATCAGTA
*
99260724 ATCGCAGCAAAGCTGCCAGTAACAGTA
1 ATCGCAGCAAAGCTGCCAGTATCAGTA
99260751 AT-GCAGCAAAGCTGCCAGTATCAGTA
1 ATCGCAGCAAAGCTGCCAGTATCAGTA
99260777 TATGTGGCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.06
26 42 0.89
27 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (27 bp):
ATCGCAGCAAAGCTGCCAGTATCAGTA
Found at i:99260795 original size:27 final size:26
Alignment explanation
Indices: 99260705--99260802 Score: 94
Period size: 26 Copynumber: 3.8 Consensus size: 26
99260695 AATATCGCAA
*
99260705 CAAAGCTGCTAGTAATCA-T-ATCGCAG
1 CAAAGCTGCCAGTAA-CAGTAAT-GCAG
99260731 CAAAGCTGCCAGTAACAGTAATGCAG
1 CAAAGCTGCCAGTAACAGTAATGCAG
* **
99260757 CAAAGCTGCCAGTATCAGTATATGTGG
1 CAAAGCTGCCAGTAACAGTA-ATGCAG
**
99260784 CAAAGCCACCAGTAA-AGTA
1 CAAAGCTGCCAGTAACAGTA
99260803 TACTTCCTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
25 2 0.03
26 42 0.68
27 18 0.29
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTAATGCAG
Found at i:99262224 original size:13 final size:13
Alignment explanation
Indices: 99262206--99262230 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99262196 GCACAAACCC
99262206 GAGAGAAAAGAAA
1 GAGAGAAAAGAAA
99262219 GAGAGAAAAGAA
1 GAGAGAAAAGAA
99262231 CCCCAAACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
GAGAGAAAAGAAA
Found at i:99266403 original size:32 final size:33
Alignment explanation
Indices: 99266366--99266427 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
99266356 AGTAATAGTC
*
99266366 TGGGCCTGAGCCCTATT-CAG-AACAGTACAGTG
1 TGGGCCTGAGCCC-ATTACAGTAACAATACAGTG
*
99266398 TGGGCCTTAGCCCATTACAGTAACAATACA
1 TGGGCCTGAGCCCATTACAGTAACAATACA
99266428 ACACAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 3 0.12
32 15 0.58
33 8 0.31
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (33 bp):
TGGGCCTGAGCCCATTACAGTAACAATACAGTG
Found at i:99266562 original size:26 final size:27
Alignment explanation
Indices: 99266533--99266610 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
99266523 CCAATATCGC
99266533 AGCAAAGCTGCCAGTAACAGTA-ACGT
1 AGCAAAGCTGCCAGTAACAGTATACGT
* ** *
99266559 AGCAAAGCTGCCAATATGAGTATATGT
1 AGCAAAGCTGCCAGTAACAGTATACGT
* **
99266586 TGCAAAGCCACCAGTAACAGTATAC
1 AGCAAAGCTGCCAGTAACAGTATAC
99266611 TTCCTCCATA
Statistics
Matches: 40, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
AGCAAAGCTGCCAGTAACAGTATACGT
Found at i:99267899 original size:19 final size:19
Alignment explanation
Indices: 99267854--99267899 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
99267844 TATTAATTTA
* *
99267854 AAATGAAATAGTATATAAT
1 AAATGAAATAATAAATAAT
99267873 AAAT-AAATAAATAAATAAT
1 AAATGAAAT-AATAAATAAT
99267892 -AATGAAAT
1 AAATGAAAT
99267900 GTGTATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (19 bp):
AAATGAAATAATAAATAAT
Found at i:99268252 original size:4 final size:4
Alignment explanation
Indices: 99268243--99268268 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
99268233 AAAATAGTAA
99268243 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
99268269 TTGGATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:99273834 original size:34 final size:33
Alignment explanation
Indices: 99273796--99273868 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 33
99273786 ACATTAGCAA
* *
99273796 TATCAATGTGGGCCTTAGCCC-ATTACGGTAACAG
1 TATCAATATGGGCCTTAGCCCAATT-CAGT-ACAG
* *
99273830 TATCAGTATGGGCCTTATCCCAATTCAGTACAG
1 TATCAATATGGGCCTTAGCCCAATTCAGTACAG
99273863 TATCAA
1 TATCAA
99273869 AGATGTAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
33 9 0.27
34 21 0.64
35 3 0.09
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (33 bp):
TATCAATATGGGCCTTAGCCCAATTCAGTACAG
Found at i:99282815 original size:58 final size:57
Alignment explanation
Indices: 99282745--99282875 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 57
99282735 GTGAGAAGAT
* *
99282745 TGGCACTAAGTGTGCAAGCTTGAAA-TATTTGGCACTAAGTGTGCGAATTTAAAAT-ACA
1 TGGCACTAAGTGTGCAA-CTT-AAATTATATGGCACTAAGTGTGCGAACTT-AAATCACA
* * *
99282803 TGGCACTAAGTGTGTGAACTTAAATTATATGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTG-CAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
*
99282861 TGGCACTAATTGTGC
1 TGGCACTAAGTGTGC
99282876 GTGATCGATT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
57 7 0.11
58 54 0.86
59 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (57 bp):
TGGCACTAAGTGTGCAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
Found at i:99282876 original size:29 final size:29
Alignment explanation
Indices: 99282745--99282876 Score: 142
Period size: 29 Copynumber: 4.6 Consensus size: 29
99282735 GTGAGAAGAT
* **
99282745 TGGCACTAAGTGTGC-AAGCTTGAAATATT
1 TGGCACTAAGTGTGCGAA-CTTAAAATACA
*
99282774 TGGCACTAAGTGTGCGAATTTAAAATACA
1 TGGCACTAAGTGTGCGAACTTAAAATACA
* * *
99282803 TGGCACTAAGTGTGTGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAAATACA
* *
99282832 TGGCACTATGTGTGCGAGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAACTTAAAAT-ACA
*
99282861 TGGCACTAATTGTGCG
1 TGGCACTAAGTGTGCG
99282877 TGATCGATTA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 3 0.03
29 81 0.94
30 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAAATACA
Found at i:99287755 original size:46 final size:46
Alignment explanation
Indices: 99287683--99287777 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 46
99287673 AATGACGATG
* *
99287683 ATTTGTACTAGCAGGTTTGAGGACTAAACCATTGTTTCTTTAATGA
1 ATTTGTACTAGCAGGTTTGAGAACTAAACCATTATTTCTTTAATGA
* * *
99287729 ATTTGTACTGGCAGAG-TTGATAACTAAACCCTTATTTCTTTAATGA
1 ATTTGTACTAGCAG-GTTTGAGAACTAAACCATTATTTCTTTAATGA
99287775 ATT
1 ATT
99287778 CAAGAGTTAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (46 bp):
ATTTGTACTAGCAGGTTTGAGAACTAAACCATTATTTCTTTAATGA
Found at i:99294321 original size:43 final size:43
Alignment explanation
Indices: 99294243--99294356 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
99294233 TATGATTTAC
* * ** *
99294243 ATGTAAGACCATGTTTGAGACACCGGCATC-CTATTTGATT-T
1 ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAT
* * *
99294284 CGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGATTAT
1 -ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAT
*
99294328 ATGTAAGACCATGTCTGGGACATTGGCAT
1 ATGTAAGACCATGTCTGGGACAGTGGCAT
99294357 TGTACGGACT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 23 0.40
43 34 0.59
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAT
Found at i:99297059 original size:16 final size:17
Alignment explanation
Indices: 99297038--99297070 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
99297028 CTATTTTGCT
99297038 ATATGTTCTG-TATATG
1 ATATGTTCTGATATATG
*
99297054 ATATGTTTTGATATATG
1 ATATGTTCTGATATATG
99297071 TAGGATTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.52
Consensus pattern (17 bp):
ATATGTTCTGATATATG
Found at i:99299800 original size:40 final size:40
Alignment explanation
Indices: 99299740--99299907 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
99299730 CCTTCGAGAT
*
99299740 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
99299779 TTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
99299819 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
99299859 ATAGCCCGGATATAGAAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
99299899 TTAGTCCGG
1 TTAGCCCGG
99299908 TTATCATCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 5 0.05
40 102 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:99306228 original size:40 final size:40
Alignment explanation
Indices: 99306161--99306337 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
99306151 ACCCAAGTAT
*
99306161 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
99306200 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
99306240 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
99306280 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
99306320 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
99306338 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:99308339 original size:37 final size:37
Alignment explanation
Indices: 99308275--99308394 Score: 141
Period size: 37 Copynumber: 3.2 Consensus size: 37
99308265 CTTTGTGCCA
* *
99308275 TGGCGTGTTATCGGTTGGTTTAACTCTTATGAGCGTT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
* * *
99308312 TGGCATGTTATCGGTTAGATTAGCTCTTATGAGTGTT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
*** * **
99308349 TGGCGTGTTATTTTTTGGATTAACTCTTATGAGAATT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
99308386 TGGCGTGTT
1 TGGCGTGTT
99308395 TTAGTTGGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.17, C:0.11, G:0.28, T:0.45
Consensus pattern (37 bp):
TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
Found at i:99311180 original size:23 final size:22
Alignment explanation
Indices: 99311132--99311205 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 22
99311122 GCGTATCTGC
* *
99311132 TAATAATAACCAACAAAGCT-A
1 TAATAGTAACCAGCAAAGCTGA
99311153 CTAATAGTAACACAGCAAAGCTGA
1 -TAATAGTAAC-CAGCAAAGCTGA
* *
99311177 TAATAGTAATGCAGCAAAGCTGC
1 TAATAGTAA-CCAGCAAAGCTGA
99311200 TAATAG
1 TAATAG
99311206 AGGTAAACGT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
22 9 0.20
23 35 0.78
24 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.20
Consensus pattern (22 bp):
TAATAGTAACCAGCAAAGCTGA
Done.