Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 344 of 444
Found at i:99610845 original size:15 final size:18
Alignment explanation
Indices: 99610808--99610846 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
99610798 ATATAAATAT
99610808 ATAAAAAATATAATACAA
1 ATAAAAAATATAATACAA
99610826 A-AAAAAATA-AA-A-AA
1 ATAAAAAATATAATACAA
99610840 ATAAAAA
1 ATAAAAA
99610847 TTTACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
14 3 0.15
15 6 0.30
16 2 0.10
17 8 0.40
18 1 0.05
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (18 bp):
ATAAAAAATATAATACAA
Found at i:99611459 original size:3 final size:3
Alignment explanation
Indices: 99611453--99611556 Score: 63
Period size: 3 Copynumber: 34.0 Consensus size: 3
99611443 ATCATTCTAA
* * * *
99611453 TAT TAT TAA TAC TAT TAT T-T ATAT TAT TAT TAT TGT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * *
99611498 TAT T-T TGGT TAT TAAA TAT TAT TAT T-T TAAT GTAT TAT TAT T-T CTAG
1 TAT TAT T-AT TAT T-AT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT -TAT
99611545 TAT TAT TAT TAT
1 TAT TAT TAT TAT
99611557 ATATAATATT
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
2 6 0.08
3 64 0.81
4 8 0.10
5 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:99611539 original size:22 final size:21
Alignment explanation
Indices: 99611429--99611539 Score: 57
Period size: 22 Copynumber: 5.1 Consensus size: 21
99611419 TTTTGTTTTT
*
99611429 TTAATATTGTT-ATTATCATT-
1 TTAATATT-TTAATTATTATTA
* *
99611449 CTAATATTATTAA-TACTATTA
1 TTAATATT-TTAATTATTATTA
* *
99611470 TTTATATTATTATTATTGTTATTA
1 TTAATATT-TTA--ATTATTATTA
** *
99611494 TTAATATTTTGGTTATTAAATA
1 TTAATATTTTAATTATT-ATTA
*
99611516 TTATTATTTTAATGTATTATTA
1 TTAATATTTTAAT-TATTATTA
99611538 TT
1 TT
99611540 TCTAGTATTA
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
20 14 0.21
21 15 0.22
22 18 0.27
23 7 0.10
24 13 0.19
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (21 bp):
TTAATATTTTAATTATTATTA
Found at i:99611782 original size:3 final size:3
Alignment explanation
Indices: 99611776--99611813 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
99611766 ATTCTAATAA
*
99611776 TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
99611814 ATTTATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:99611784 original size:17 final size:17
Alignment explanation
Indices: 99611764--99611804 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
99611754 TTTAATTACT
*
99611764 TTATTCTAATAATATTA
1 TTATTATAATAATATTA
* *
99611781 TTATTATTATATTATTA
1 TTATTATAATAATATTA
99611798 TTATTAT
1 TTATTAT
99611805 TGTTATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTATAATAATATTA
Found at i:99611799 original size:14 final size:14
Alignment explanation
Indices: 99611775--99611858 Score: 62
Period size: 18 Copynumber: 5.4 Consensus size: 14
99611765 TATTCTAATA
99611775 ATATTATTATTATT
1 ATATTATTATTATT
99611789 ATATTATTATTATT
1 ATATTATTATTATT
*
99611803 ATTGTTATTA-TATTT
1 A-TATTATTATTA-TT
99611818 ATATATATATATATATAT
1 ATAT-TAT-TAT-TAT-T
99611836 ATATATATATATATATGT
1 ATAT-TAT-TAT-TAT-T
99611854 ATATT
1 ATATT
99611859 TATTTTAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
14 19 0.32
15 13 0.22
16 2 0.03
17 2 0.03
18 24 0.40
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
ATATTATTATTATT
Found at i:99611817 original size:143 final size:134
Alignment explanation
Indices: 99611513--99611843 Score: 318
Period size: 143 Copynumber: 2.4 Consensus size: 134
99611503 TGGTTATTAA
* *
99611513 ATATTATTATT-TTAATG-TATTATTATTTCTAGTATTATTATTATATATAATATTAGTGTATGT
1 ATATTATTATTATTATTGTTATTATTATTTCTAGTATGATTATTATATATAATATTAGTGTATGT
* * *
99611576 TTTATATATGTATGTACATATATATATAGTATTATCTCAATTACTTTATTTTAATATTACTATTG
66 TTTATATATGTATGTACATATATATACAGTATTATCTCAATTACTTTATTCTAATAATACTATTG
99611641 TATT
131 TATT
* * * * *
99611645 ATATTTACTTTTTA-TATT-TCATCATTATTTCTAGTATGGTTATTAT-TATTAATCTTAGTGTA
1 ATA-TTA-TTATTATTATTGTTATTATTATTTCTAGTATGATTATTATATA-TAATATTAGTGTA
* * *
99611707 TGTTTTATTATATATGTATGTATATACATTTTTATATACAGTATTATTTTAATTACTTTATTCTA
63 TG--TT-TTATATATGTATG----TACA--TATATATACAGTATTATCTCAATTACTTTATTCTA
* *
99611772 ATAATATTATTATTATT
119 ATAATACTATT-GTATT
*
99611789 ATATTATTATTATTATTGTTATTA-TATTTATA-TAT-ATATATATATATATATATAT
1 ATATTATTATTATTATTGTTATTATTATTTCTAGTATGAT-TAT-TATATATA-ATAT
99611844 ATATATATGT
Statistics
Matches: 157, Mismatches: 21, Indels: 30
0.75 0.10 0.14
Matches are distributed among these distances:
132 3 0.02
133 5 0.03
134 44 0.28
136 2 0.01
137 13 0.08
141 5 0.03
142 11 0.07
143 58 0.37
144 16 0.10
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (134 bp):
ATATTATTATTATTATTGTTATTATTATTTCTAGTATGATTATTATATATAATATTAGTGTATGT
TTTATATATGTATGTACATATATATACAGTATTATCTCAATTACTTTATTCTAATAATACTATTG
TATT
Found at i:99611824 original size:2 final size:2
Alignment explanation
Indices: 99611811--99611857 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
99611801 TTATTGTTAT
* *
99611811 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99611853 TA TA T
1 TA TA T
99611858 TTATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:99612145 original size:16 final size:16
Alignment explanation
Indices: 99612126--99612186 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
99612116 TTTTTTAAAA
99612126 ATATTATATTTTTCAT
1 ATATTATATTTTTCAT
**
99612142 ATATTATGTATTTTTTTTT
1 ATATTA--TA-TTTTTCAT
* *
99612161 ATATTATATTATTCGT
1 ATATTATATTTTTCAT
*
99612177 ATATTTTATT
1 ATATTATATT
99612187 GTATTATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
16 20 0.56
17 2 0.06
18 2 0.06
19 12 0.33
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (16 bp):
ATATTATATTTTTCAT
Found at i:99612178 original size:26 final size:25
Alignment explanation
Indices: 99612141--99612200 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
99612131 ATATTTTTCA
* *
99612141 TATATTA-TGTATTTTTTTTTATAT
1 TATATTATTGTATATTTTATTATAT
*
99612165 TATATTATTCGTATATTTTATTGTAT
1 TATATTATT-GTATATTTTATTATAT
99612191 TATATATATT
1 TATAT-TATT
99612201 TTTTTCTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.23
25 1 0.03
26 18 0.60
27 4 0.13
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (25 bp):
TATATTATTGTATATTTTATTATAT
Found at i:99612199 original size:35 final size:35
Alignment explanation
Indices: 99612117--99612200 Score: 82
Period size: 35 Copynumber: 2.4 Consensus size: 35
99612107 TATTTAGTTT
* * *
99612117 TTTTTAAAAATATTATATTTTTCATATATTATGTA
1 TTTTTATATATATTATATTATTCATATATTATGTA
* * *
99612152 TTTTTTTTTATATTATATTATTCGTATATT-T-TA
1 TTTTTATATATATTATATTATTCATATATTATGTA
99612185 TTGTATTATATATATT
1 TT-T-TTATATATATT
99612201 TTTTTCTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
33 4 0.10
34 2 0.05
35 33 0.85
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (35 bp):
TTTTTATATATATTATATTATTCATATATTATGTA
Found at i:99612292 original size:24 final size:23
Alignment explanation
Indices: 99612249--99612331 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
99612239 TATCATACTA
*
99612249 TTCATATAT-T-TTAT-TTTTAT
1 TTCATATATATATTATATATTAT
99612269 TTCATATATATATATATATATTAT
1 TTCATATATATAT-TATATATTAT
* * *
99612293 TAGTTATATATATATTTTATACTAT
1 T--TCATATATATATTATATATTAT
* *
99612318 TTCATGTATGTATT
1 TTCATATATATATT
99612332 TTTTATATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
20 9 0.18
21 1 0.02
22 1 0.02
23 13 0.26
24 6 0.12
25 9 0.18
26 11 0.22
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.59
Consensus pattern (23 bp):
TTCATATATATATTATATATTAT
Found at i:99612395 original size:25 final size:25
Alignment explanation
Indices: 99612357--99612404 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
99612347 ATCATTGTTG
* *
99612357 TTAATATTAGTATATGTATATATCT
1 TTAATATTAGTATAGGTACATATCT
99612382 TTAATATATA-TATAGGTACATAT
1 TTAATAT-TAGTATAGGTACATAT
99612405 TTATGTGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
TTAATATTAGTATAGGTACATATCT
Found at i:99615404 original size:28 final size:28
Alignment explanation
Indices: 99615372--99615470 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99615362 GCAATAAGCC
*
99615372 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99615400 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99615428 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99615457 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99615471 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99629360 original size:24 final size:24
Alignment explanation
Indices: 99629328--99629520 Score: 368
Period size: 24 Copynumber: 8.0 Consensus size: 24
99629318 GGGTAGAAAG
99629328 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629352 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629376 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629400 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629424 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629448 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629472 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
* *
99629496 TTTACTATGGCACTATATGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
99629520 T
1 T
99629521 CATAATAAGC
Statistics
Matches: 167, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 167 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.38
Consensus pattern (24 bp):
TTTACTATGGCACTGTGTGTGCGA
Found at i:99635367 original size:16 final size:15
Alignment explanation
Indices: 99635342--99635375 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
99635332 AAAGTTGATA
*
99635342 ATAATTAATATACATT
1 ATAATAAATATA-ATT
99635358 ATAATAAATATAATT
1 ATAATAAATATAATT
99635373 ATA
1 ATA
99635376 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:99642698 original size:46 final size:46
Alignment explanation
Indices: 99642648--99642770 Score: 174
Period size: 46 Copynumber: 2.7 Consensus size: 46
99642638 TTGAGCATCT
***
99642648 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
** * *
99642694 GAACTCGTTGAGTTGAGTATGAGTTCATTTATGGATGCGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
*
99642740 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
99642771 GGGGGGTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
Found at i:99643030 original size:19 final size:20
Alignment explanation
Indices: 99642993--99643030 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
99642983 ATAAGGTGAT
99642993 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
99643013 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
99643031 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:99645949 original size:34 final size:33
Alignment explanation
Indices: 99645904--99645999 Score: 97
Period size: 34 Copynumber: 2.9 Consensus size: 33
99645894 TATCAGTTAC
* *
99645904 GCCTTAGCCCATTACAATAATAGTAACAGTCTGG
1 GCCTAAGCCCATTACAATAATAGTAACAGT-GGG
* * * *
99645938 GCCTGAGCCCATTACAGTAACAGTAGCAGTGGG
1 GCCTAAGCCCATTACAATAATAGTAACAGTGGG
*
99645971 GCCTAAGCCCATAACAA-AATCAGT-ACAGT
1 GCCTAAGCCCATTACAATAAT-AGTAACAGT
99646000 ATGCAATCAG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
32 6 0.12
33 19 0.37
34 26 0.51
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (33 bp):
GCCTAAGCCCATTACAATAATAGTAACAGTGGG
Found at i:99651096 original size:42 final size:43
Alignment explanation
Indices: 99651015--99651108 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 43
99651005 TCCAAGACGT
* * **
99651015 GGTCTTACATGTAATCAAATATCGATGGCTCTATCCCAGACAA
1 GGTCTTACATGAAATCAAATATCGATGCCGATATCCCAGACAA
* *
99651058 GGTCTTACATGAAATCAAATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCGATATCCCAGACAA
99651100 GGTCTTACA
1 GGTCTTACA
99651109 GGTAAATCTC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCGATATCCCAGACAA
Found at i:99651116 original size:43 final size:44
Alignment explanation
Indices: 99651009--99651116 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 44
99650999 CCAACTTCCA
* * **
99651009 AGACGTGGTCTTACATGT-AATCAAATATCGATGGCTCTATCCC
1 AGACATGGTCTTACATGTAAATCAAATATCGATGCCGATATCCC
* *
99651052 AGACAAGGTCTTACATG-AAATCAAATA-CGATGCCGATGTCCC
1 AGACATGGTCTTACATGTAAATCAAATATCGATGCCGATATCCC
*
99651094 AGACATGGTCTTACAGGTAAATC
1 AGACATGGTCTTACATGTAAATC
99651117 TCGAATCAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.47
43 29 0.53
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (44 bp):
AGACATGGTCTTACATGTAAATCAAATATCGATGCCGATATCCC
Found at i:99654370 original size:40 final size:40
Alignment explanation
Indices: 99654325--99654491 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
99654315 CGGAATATAA
99654325 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99654365 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
99654405 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99654445 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99654484 CCGGATAT
1 CCGGATAT
99654492 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99654475 original size:80 final size:79
Alignment explanation
Indices: 99654341--99654491 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
99654331 ATAATCACGT
*
99654341 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
99654406 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
99654421 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
99654484 CCGGATAT
64 CCGGATAT
99654492 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:99662377 original size:40 final size:40
Alignment explanation
Indices: 99662332--99662498 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
99662322 CGGAATATAA
99662332 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
99662372 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
99662412 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
99662452 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99662491 CCGGATAT
1 CCGGATAT
99662499 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99662482 original size:80 final size:79
Alignment explanation
Indices: 99662348--99662498 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
99662338 ATAATCACGT
*
99662348 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
99662413 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
99662428 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
99662491 CCGGATAT
64 CCGGATAT
99662499 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:99666369 original size:47 final size:47
Alignment explanation
Indices: 99666309--99666402 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
99666299 CTGCATTCCA
*
99666309 TCCTCAAAAAGACGGGCAGTCAGAGAGGGTGATTCAGATACTAGAGG
1 TCCTCAAAAAGACGGGCAATCAGAGAGGGTGATTCAGATACTAGAGG
* * *
99666356 TCCTCAGACAGACGGGCAATCAGAGAGGGTGATTCAGATATTAGAGG
1 TCCTCAAAAAGACGGGCAATCAGAGAGGGTGATTCAGATACTAGAGG
99666403 ATATGTTAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.18
Consensus pattern (47 bp):
TCCTCAAAAAGACGGGCAATCAGAGAGGGTGATTCAGATACTAGAGG
Found at i:99684796 original size:12 final size:12
Alignment explanation
Indices: 99684779--99684808 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99684769 AAAGAAAAAG
99684779 TTAGAATCTAGA
1 TTAGAATCTAGA
99684791 TTAGAATCTAGA
1 TTAGAATCTAGA
99684803 TT-GAAT
1 TTAGAAT
99684809 TGAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.37
Consensus pattern (12 bp):
TTAGAATCTAGA
Found at i:99692465 original size:34 final size:33
Alignment explanation
Indices: 99692405--99692495 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 33
99692395 GTATGCATTT
*
99692405 CTGATACTGTACTGAAATGGGCTAAGGCCCACA
1 CTGATACTGTACTGAAATGGGCTAAGGCACACA
* * *
99692438 CTGATACTGTTACTGTATTGGGTTAAGGCACACA
1 CTGATACTG-TACTGAAATGGGCTAAGGCACACA
* *
99692472 CTGATACTGCGACTGATATGGGCT
1 CTGATACTG-TACTGAAATGGGCT
99692496 TAAGCCTAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 9 0.19
34 38 0.81
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (33 bp):
CTGATACTGTACTGAAATGGGCTAAGGCACACA
Found at i:99695991 original size:2 final size:2
Alignment explanation
Indices: 99695984--99696026 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
99695974 ATGCTAGCTT
99695984 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99696026 T
1 T
99696027 TAAGTGGTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:99700060 original size:15 final size:15
Alignment explanation
Indices: 99700036--99700067 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99700026 TCGTAAAGGA
*
99700036 CCGATTTCGTGACAC
1 CCGATGTCGTGACAC
99700051 CCGATGTCGTGACAC
1 CCGATGTCGTGACAC
99700066 CC
1 CC
99700068 TAGTGCCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.38, G:0.22, T:0.22
Consensus pattern (15 bp):
CCGATGTCGTGACAC
Found at i:99700887 original size:18 final size:18
Alignment explanation
Indices: 99700864--99700898 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
99700854 CAAGAATGGT
99700864 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
99700882 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
99700899 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:99701151 original size:40 final size:40
Alignment explanation
Indices: 99701104--99701183 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
99701094 CTTTTTTCAA
99701104 TACCACTCCCAAATGTTTTTATTTTACACGCACTTTTTCT
1 TACCACTCCCAAATGTTTTTATTTTACACGCACTTTTTCT
99701144 TACCACTCCCAAATGTTTTTATTTTACACGCACTTTTTCT
1 TACCACTCCCAAATGTTTTTATTTTACACGCACTTTTTCT
99701184 ACTCGTTTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.28, G:0.05, T:0.45
Consensus pattern (40 bp):
TACCACTCCCAAATGTTTTTATTTTACACGCACTTTTTCT
Found at i:99706293 original size:27 final size:29
Alignment explanation
Indices: 99706263--99706330 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 29
99706253 TGATGTTACC
*
99706263 TATATACATACGTAT-AT-ATATTATAAA-
1 TATATACATA-GTATAATAATATTACAAAG
*
99706290 TATAAACAT-G-ATAATAATATTACAAAG
1 TATATACATAGTATAATAATATTACAAAG
99706317 TATATACATAGTAT
1 TATATACATAGTAT
99706331 GATGTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
24 2 0.06
25 3 0.09
26 9 0.27
27 16 0.48
28 1 0.03
29 2 0.06
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (29 bp):
TATATACATAGTATAATAATATTACAAAG
Found at i:99706699 original size:22 final size:21
Alignment explanation
Indices: 99706656--99706716 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
99706646 AAATAGTATA
***
99706656 AAAAATATATATATAACTAAT
1 AAAAATATATATATATGAAAT
*
99706677 AATATATATATATATATGAAAT
1 AA-AAATATATATATATGAAAT
*
99706699 AAAAATA-AAATATATGAA
1 AAAAATATATATATATGAA
99706717 TAGTATGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 10 0.30
21 6 0.18
22 17 0.52
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAAATATATATATATGAAAT
Found at i:99706839 original size:16 final size:16
Alignment explanation
Indices: 99706779--99706840 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
99706769 TATATAATAC
* * *
99706779 AATAAAATATACGAAT
1 AATATAATATATGAAA
*
99706795 AATATAATATATAAAAAA
1 AATATAATATAT--GAAA
99706813 AATACATAATATATGAAA
1 AAT--ATAATATATGAAA
99706831 AATATAATAT
1 AATATAATAT
99706841 TTTTAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
16 17 0.46
18 11 0.30
20 9 0.24
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (16 bp):
AATATAATATATGAAA
Found at i:99707121 original size:2 final size:2
Alignment explanation
Indices: 99707108--99707142 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
99707098 TTTAAAATAA
* *
99707108 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
99707143 ATAACAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:99707154 original size:3 final size:3
Alignment explanation
Indices: 99707140--99707177 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
99707130 ATATATAAAT
*
99707140 ATA ATA ACA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
99707178 TTATTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:99707176 original size:14 final size:14
Alignment explanation
Indices: 99707149--99707178 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
99707139 TATAATAACA
99707149 ATAATAATAATAAT
1 ATAATAATAATAAT
99707163 ATAATAATAATAAT
1 ATAATAATAATAAT
99707177 AT
1 AT
99707179 TATTAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:99707188 original size:17 final size:17
Alignment explanation
Indices: 99707151--99707205 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
99707141 TAATAACAAT
*
99707151 AATAATAATAATATAAT
1 AATAATAATAATATAAG
* *
99707168 AATAATAATATTATTAG
1 AATAATAATAATATAAG
*
99707185 AATAA-AGTAAT-TAA-
1 AATAATAATAATATAAG
99707199 AATAATA
1 AATAATA
99707206 CTGTATATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
14 5 0.16
15 3 0.10
16 4 0.13
17 19 0.61
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (17 bp):
AATAATAATAATATAAG
Found at i:99707515 original size:3 final size:3
Alignment explanation
Indices: 99707397--99707500 Score: 63
Period size: 3 Copynumber: 34.0 Consensus size: 3
99707387 AATATTATAT
* *
99707397 ATA ATA ATA ATA CTA GA-A ATA ATA ATA CATTA A-A ATA ATA ATA TTTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA ATA -ATA
* * *
99707444 ATA ACCA A-A ATA TTA ATA ATA ACA ATA ATA ATA AT- ATAA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* *
99707489 GTA TTA ATA ATA
1 ATA ATA ATA ATA
99707501 TTAGAATGAT
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
2 7 0.09
3 62 0.78
4 8 0.10
5 2 0.03
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99708162 original size:16 final size:16
Alignment explanation
Indices: 99708133--99708183 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 16
99708123 TTTATTTTTT
*
99708133 TATTTTTT-TGTATTA
1 TATTTTTTATATATTA
99708148 TATTTTTTATATATTTA
1 TATTTTTTATATA-TTA
*
99708165 TATGTTTTGATATA-TA
1 TAT-TTTTTATATATTA
99708181 TAT
1 TAT
99708184 GTGGAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 8 0.26
16 8 0.26
17 6 0.19
18 9 0.29
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (16 bp):
TATTTTTTATATATTA
Found at i:99708817 original size:25 final size:25
Alignment explanation
Indices: 99708779--99708826 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
99708769 TCTTTACTCA
*
99708779 TTGTCGTATAACGATAACAGAGTTG
1 TTGTCGTATAACGAGAACAGAGTTG
* * *
99708804 TTGTCGTGTGACGAGAATAGAGT
1 TTGTCGTATAACGAGAACAGAGT
99708827 AAAGACTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.31
Consensus pattern (25 bp):
TTGTCGTATAACGAGAACAGAGTTG
Found at i:99709178 original size:21 final size:21
Alignment explanation
Indices: 99709145--99709199 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
99709135 TCTGATATCC
* *
99709145 TCGATCGGTTCCACTGCAACT
1 TCGATCAGCTCCACTGCAACT
*
99709166 TCGATTAGCTCCACTGCAACT
1 TCGATCAGCTCCACTGCAACT
99709187 TCGATCAGCTCCA
1 TCGATCAGCTCCA
99709200 ATCTTTATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.35, G:0.16, T:0.27
Consensus pattern (21 bp):
TCGATCAGCTCCACTGCAACT
Found at i:99709426 original size:88 final size:85
Alignment explanation
Indices: 99709320--99709619 Score: 333
Period size: 88 Copynumber: 3.4 Consensus size: 85
99709310 ACGTGAGCCA
* * * *
99709320 AGGCTCAACTCATTTCTCGCAATATGAGTTGGTTTTTTG-AAACTTAATTTGAAAAGAAGATTTT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTT-GATTTTTGAAAACTTAAATTGAAAAGAAGA-ATT
*
99709384 GAAAATACCTC-GACATGTGACCCG
63 GAAAATACCTCAG-CATGT-ACCTG
* * *
99709408 AGGCTCAACTCACATCTCGCAATAGGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAAT
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTTGAAAACT-TAAATTGAAAAGA-AG-AAT
99709473 TGAAAATACCTCAGC--GTACCTTG
62 TGAAAATACCTCAGCATGTACC-TG
* *
99709496 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAACTTGAAAAACGAA-AAT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAA-CTTAAATTG-AAAA-GAAGAAT
99709560 TGAAAATACCTCAGCATGT-CCTG
62 TGAAAATACCTCAGCATGTACCTG
99709583 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTT
99709620 TTGAAAAACA
Statistics
Matches: 185, Mismatches: 14, Indels: 27
0.82 0.06 0.12
Matches are distributed among these distances:
87 66 0.36
88 81 0.44
89 19 0.10
90 17 0.09
91 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (85 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAACTTAAATTGAAAAGAAGAATTGAA
AATACCTCAGCATGTACCTG
Found at i:99709600 original size:87 final size:87
Alignment explanation
Indices: 99709320--99709619 Score: 348
Period size: 87 Copynumber: 3.4 Consensus size: 87
99709310 ACGTGAGCCA
* * * * *
99709320 AGGCTCAACTCATTTCTCGCAATATGAGTTGGTTTTTTG-AAACTTAATTTG-AAAA-GAAGATT
1 AGGCTCAACTCATCTCTCGCAATATGAGTT-GATTTTTGAAAACATAAATTGAAAAACGAA-A-A
*
99709382 TTGAAAATACCTC-GACATGTGACCCG
63 TTGAAAATACCTCAG-CATGT-ACCTG
* *
99709408 AGGCTCAACTCA-CATCTCGCAATAGGAGTTGATTTTTGAAAAATATAAATTGAAAAAAC-AGAA
1 AGGCTCAACTCATC-TCTCGCAATATGAGTTGATTTTTG-AAAACATAAATTG-AAAAACGA-AA
99709471 ATTGAAAATACCTCAGC--GTACCTTG
62 ATTGAAAATACCTCAGCATGTACC-TG
* *
99709496 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAACTTGAAAAACGAAAATT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAA-CATAAATTGAAAAACGAAAATT
99709561 GAAAATACCTCAGCATGT-CCTG
65 GAAAATACCTCAGCATGTACCTG
99709583 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
99709620 TTGAAAAACA
Statistics
Matches: 186, Mismatches: 12, Indels: 29
0.82 0.05 0.13
Matches are distributed among these distances:
87 77 0.41
88 75 0.40
89 12 0.06
90 14 0.08
91 7 0.04
92 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (87 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAACGAAAATTG
AAAATACCTCAGCATGTACCTG
Found at i:99709664 original size:103 final size:103
Alignment explanation
Indices: 99709534--99709735 Score: 325
Period size: 103 Copynumber: 2.0 Consensus size: 103
99709524 TTGATTTTTG
* * *
99709534 AAAAGCATAACTTGAAAAACGAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCATCTC
1 AAAAGCAGAACTTGAAAAACGAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCCC
99709599 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAATTTA
66 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAATTTA
* * *
99709637 AAAAGCAGAATTTGAAAAGC-AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCC
1 AAAAGCAGAACTTGAAAAACGA-AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCC
*
99709701 CTCGCAATATGAGTTGATTTTTTTGAAAAATAGAA
65 CTCGCAATATGAGTTGATTTTTTTGAAAAACAGAA
99709736 ATTGAAAATA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 1 0.01
103 90 0.99
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (103 bp):
AAAAGCAGAACTTGAAAAACGAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCCC
TCGCAATATGAGTTGATTTTTTTGAAAAACAGAATTTA
Found at i:99709665 original size:14 final size:14
Alignment explanation
Indices: 99709619--99709668 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
99709609 AGTTGATTTT
*
99709619 TTTGAAAAACAGAA
1 TTTGAAAAGCAGAA
*
99709633 TTTAAAAAGCAGAA
1 TTTGAAAAGCAGAA
99709647 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
99709661 ATTGAAAA
1 TTTGAAAA
99709669 TACCTCAGCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:99709770 original size:75 final size:75
Alignment explanation
Indices: 99709647--99709812 Score: 269
Period size: 75 Copynumber: 2.2 Consensus size: 75
99709637 AAAAGCAGAA
** * * *
99709647 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCCCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAACATGTCCCGAGGCTCAACTCACCCCTCGCAATATG
*
99709712 AGTTGATTTT
66 AGTTAATTTT
*
99709722 TTTGAAAAATAGAAATTGAAAATACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAACATGTCCCGAGGCTCAACTCACCCCTCGCAATATG
99709787 AGTTAATTTT
66 AGTTAATTTT
99709797 TTTGAAAAATAGAAAT
1 TTTGAAAAATAGAAAT
99709813 AAAAACATTA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 84 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (75 bp):
TTTGAAAAATAGAAATTGAAAATACCTCAACATGTCCCGAGGCTCAACTCACCCCTCGCAATATG
AGTTAATTTT
Found at i:99719821 original size:37 final size:37
Alignment explanation
Indices: 99719762--99719870 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
99719752 AGCTCAGATG
* * *
99719762 AAATCTCCACACGAAGTTATCGGGTATTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
99719799 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
99719836 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
99719871 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:99720072 original size:48 final size:48
Alignment explanation
Indices: 99720011--99720893 Score: 1451
Period size: 48 Copynumber: 18.0 Consensus size: 48
99720001 ATATACACAC
* *
99720011 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
99720059 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
99720107 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
99720157 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720205 ATCTCATATATAATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720256 ATCTCATACATATTTCACATTAGCCATTCGGCTTCACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720304 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720354 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720402 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
99720454 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720502 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
99720552 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720600 ATCTCATACATAATTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720648 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
99720698 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720746 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720794 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
99720844 ATCTTATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
99720892 AT
1 AT
99720894 ATTTATCTTG
Statistics
Matches: 789, Mismatches: 29, Indels: 34
0.93 0.03 0.04
Matches are distributed among these distances:
48 464 0.59
49 3 0.00
50 232 0.29
51 44 0.06
52 46 0.06
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:99720172 original size:98 final size:98
Alignment explanation
Indices: 99720020--99720893 Score: 1567
Period size: 98 Copynumber: 8.9 Consensus size: 98
99720010 CATCTCCTAC
* * *
99720020 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
99720085 TTCGGCTTTACCACAGATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
99720118 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
99720183 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
99720216 AATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
1 -ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
*
99720281 ATTCGGCTTCACCACATATACATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
99720315 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
99720380 TTCGGCTTTACCACATATATATATCTCATATATAT
66 TTCGGCTTTACCACATATACATATCTC--ATATAT
99720415 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
99720480 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
99720513 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
99720578 TTCGGCTTTACCACATATACATATCTCATACAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
99720611 A-A-TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
*
99720674 CATTCGGCTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAT
*
99720707 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
99720772 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
99720805 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
99720870 TTCGGCTTTACCACATATACATAT
66 TTCGGCTTTACCACATATACATAT
99720894 ATTTATCTTG
Statistics
Matches: 748, Mismatches: 19, Indels: 18
0.95 0.02 0.02
Matches are distributed among these distances:
96 89 0.12
97 2 0.00
98 464 0.62
99 96 0.13
100 97 0.13
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:99720192 original size:146 final size:145
Alignment explanation
Indices: 99720011--99720893 Score: 1509
Period size: 146 Copynumber: 6.0 Consensus size: 145
99720001 ATATACACAC
* *
99720011 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-ATATATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTC
* * * *
99720075 ACACTAGCCATTCGGCTTTACCACAGATACATATCTCATATATATATTTCACATTAACCATTCGG
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGG
99720140 CTTTACCACATATACAT
129 CTTTACCACATATACAT
99720157 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAATATT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATAT-ATATT
99720222 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
64 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGG
*
99720287 CTTCACCACATATACAT
129 CTTTACCACATATACAT
* *
99720304 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATT
* *
99720368 TCACATTAGCCATTCGGCTTTACCACATATATATATCTCATATATATATATTTCACATTAGCCAT
64 TCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTAGCCAT
99720433 TCGGCTTTACCACATATACAT
125 TCGGCTTTACCACATATACAT
99720454 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTT
99720519 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
99720584 TTTACCACATATACAT
130 TTTACCACATATACAT
*
99720600 ATCTCATACATAATTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTT
99720665 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
99720730 TTTACCACATATACAT
130 TTTACCACATATACAT
*
99720746 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTT
*
99720811 CACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATATTTCACATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
99720876 TTTACCACATATACAT
130 TTTACCACATATACAT
99720892 AT
1 AT
99720894 ATTTATCTTG
Statistics
Matches: 706, Mismatches: 20, Indels: 22
0.94 0.03 0.03
Matches are distributed among these distances:
146 426 0.60
147 48 0.07
148 51 0.07
149 89 0.13
150 92 0.13
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (145 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTC
ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
TTACCACATATACAT
Found at i:99728126 original size:28 final size:28
Alignment explanation
Indices: 99728065--99728162 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
99728055 TCACAAATTG
** * *
99728065 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
99728094 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
99728122 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
99728150 GCACTAAGTGTGC
1 GCACTAAGTGTGC
99728163 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:99734840 original size:15 final size:15
Alignment explanation
Indices: 99734805--99734883 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
99734795 GTATCTTGGG
*
99734805 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
99734820 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
99734834 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
99734849 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
99734864 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
99734878 TTTCTT
1 TTTCTT
99734884 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 23 0.42
15 30 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:99734866 original size:30 final size:30
Alignment explanation
Indices: 99734796--99734882 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
99734786 CATAGTATCG
* * * *
99734796 TATCTTGGGTTTCTTTATCCT-GGATTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
99734825 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
99734855 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
99734883 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.48
30 24 0.48
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:99737318 original size:46 final size:46
Alignment explanation
Indices: 99737265--99737440 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
99737255 TATTTGGGCA
99737265 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
99737311 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
99737358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
99737404 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99737441 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:99737420 original size:93 final size:93
Alignment explanation
Indices: 99737261--99737432 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99737251 GGGATATTTG
* *
99737261 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99737326 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
99737354 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99737419 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
99737433 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:99740404 original size:15 final size:15
Alignment explanation
Indices: 99740369--99740447 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
99740359 GTATCTTGGG
*
99740369 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
99740384 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
99740398 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
99740413 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
99740428 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
99740442 TTTCTT
1 TTTCTT
99740448 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 23 0.42
15 30 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:99740430 original size:30 final size:30
Alignment explanation
Indices: 99740360--99740446 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
99740350 CATAGTATCG
* * * *
99740360 TATCTTGGGTTTCTTTATCCT-GGATTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
99740389 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
99740419 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
99740447 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.48
30 24 0.48
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:99742881 original size:46 final size:46
Alignment explanation
Indices: 99742828--99743003 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
99742818 TATTTGGGCA
99742828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
99742874 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
99742921 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
99742967 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99743004 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 66 0.59
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:99742983 original size:93 final size:93
Alignment explanation
Indices: 99742824--99742995 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
99742814 GGGATATTTG
*
99742824 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
99742889 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
99742917 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
99742981 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
99742996 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:99750577 original size:2 final size:2
Alignment explanation
Indices: 99750570--99750596 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
99750560 CATTTTAACT
99750570 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
99750597 CACAAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99759029 original size:41 final size:41
Alignment explanation
Indices: 99758984--99759101 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99758974 TGAAAGATAA
99758984 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99759025 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99759055 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99759096 ATGTAG
1 ATGTAG
99759102 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99759040 original size:71 final size:71
Alignment explanation
Indices: 99758952--99759115 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99758942 GAGATGTATC
99758952 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99759017 AGGACA
66 AGGACA
99759023 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99759088 AGGACA
66 AGGACA
99759094 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99759116 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99766594 original size:41 final size:41
Alignment explanation
Indices: 99766549--99766666 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99766539 TGAAAGATAA
99766549 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99766590 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99766620 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99766661 ATGTAG
1 ATGTAG
99766667 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99766605 original size:71 final size:71
Alignment explanation
Indices: 99766517--99766680 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99766507 GAGATGTATC
99766517 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99766582 AGGACA
66 AGGACA
99766588 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99766653 AGGACA
66 AGGACA
99766659 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99766681 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99768249 original size:13 final size:13
Alignment explanation
Indices: 99768231--99768259 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
99768221 GGTTGTTTAT
99768231 TAAACTAATTAAC
1 TAAACTAATTAAC
99768244 TAAACTAATTAAC
1 TAAACTAATTAAC
99768257 TAA
1 TAA
99768260 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:99778321 original size:31 final size:31
Alignment explanation
Indices: 99778238--99778323 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
99778228 AAATTTGTAC
*
99778238 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTCAAT-ATATATAT
*
99778266 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTCAATATATATAT
99778297 AGCACTAAGTGTGCG-GACTCAATATAT
1 AGCACTAAGTGTGCGAG-CTCAATATAT
99778324 GCTTTTGCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
28 17 0.33
29 1 0.02
30 3 0.06
31 30 0.59
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTCAATATATATAT
Found at i:99778323 original size:29 final size:31
Alignment explanation
Indices: 99778238--99778311 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
99778228 AAATTTGTAC
*
99778238 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTGAAT-ATATATAT
99778266 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATATAT
99778297 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
99778312 GACTCAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTGAATATATATAT
Found at i:99779886 original size:13 final size:13
Alignment explanation
Indices: 99779868--99779896 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
99779858 GGTTGTTTAT
99779868 TAAACTAATTAAC
1 TAAACTAATTAAC
99779881 TAAACTAATTAAC
1 TAAACTAATTAAC
99779894 TAA
1 TAA
99779897 TTAAACTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:99786651 original size:3 final size:3
Alignment explanation
Indices: 99786643--99786698 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
99786633 TGCATATTTA
99786643 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
99786691 ATT ATT AT
1 ATT ATT AT
99786699 AAGACTATTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:99795824 original size:2 final size:2
Alignment explanation
Indices: 99795819--99795845 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
99795809 AAAAAAAAAA
99795819 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
99795846 ACCGGGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99795897 original size:40 final size:40
Alignment explanation
Indices: 99795842--99795959 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
99795832 TATATATATA
99795842 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
99795882 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
99795922 TATAACTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
99795960 GTTACATCTG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:99803878 original size:40 final size:40
Alignment explanation
Indices: 99803823--99803935 Score: 199
Period size: 40 Copynumber: 2.8 Consensus size: 40
99803813 TATATATATA
99803823 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
99803863 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
99803903 TATAACTGGGTTAAGTCCCGAAGGCATTTGTGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGC
99803936 TAGTTGTTAC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:99805883 original size:15 final size:16
Alignment explanation
Indices: 99805853--99805885 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
99805843 AAATGGTTAT
99805853 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
99805870 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
99805885 A
1 A
99805886 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:99822471 original size:20 final size:22
Alignment explanation
Indices: 99822448--99822491 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
99822438 AATAATAACT
99822448 AAAAAATA-TTAAAAAAT-AAA
1 AAAAAATATTTAAAAAATGAAA
* *
99822468 AAAATATATTTAATAAATGAAA
1 AAAAAATATTTAAAAAATGAAA
99822490 AA
1 AA
99822492 TCAAATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAAAATATTTAAAAAATGAAA
Found at i:99828720 original size:2 final size:2
Alignment explanation
Indices: 99828713--99828744 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
99828703 TAATTATCCA
99828713 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99828745 TTCATATTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99830572 original size:19 final size:19
Alignment explanation
Indices: 99830544--99830581 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
99830534 CCACTGTCAC
99830544 CCATCATAATCAAATTTGT
1 CCATCATAATCAAATTTGT
*
99830563 CCATCGTAATCAAATTTGT
1 CCATCATAATCAAATTTGT
99830582 TATTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (19 bp):
CCATCATAATCAAATTTGT
Found at i:99834052 original size:25 final size:25
Alignment explanation
Indices: 99833998--99834087 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
99833988 GGTTATCGAT
* * * *
99833998 TTCAGTTCTTATGAGCTTACCGATA
1 TTCAGCTCGTATGAGCTTACTGTTA
*
99834023 CTCAGCTCGTATGAGCTTACTGTTA
1 TTCAGCTCGTATGAGCTTACTGTTA
* *
99834048 TTCAGCTCGGAGGAGCTTACTGTT-
1 TTCAGCTCGTATGAGCTTACTGTTA
*
99834072 TACAGCTCGTATGAGC
1 TTCAGCTCGTATGAGC
99834088 ATACATGTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
24 13 0.24
25 41 0.76
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACTGTTA
Found at i:99835808 original size:16 final size:15
Alignment explanation
Indices: 99835783--99835813 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
99835773 GGAGAAGAAC
99835783 AAAAAATAAAAATAA
1 AAAAAATAAAAATAA
99835798 AAAAAACTAAAAATAA
1 AAAAAA-TAAAAATAA
99835814 GTTTTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAATAA
Found at i:99840437 original size:53 final size:53
Alignment explanation
Indices: 99840357--99840460 Score: 172
Period size: 53 Copynumber: 2.0 Consensus size: 53
99840347 CGTATATCCC
* * *
99840357 TATATGTTGCATTGTGGGGTTAAAGTCTTTGCATGATAAATCCATTATCTTCA
1 TATATCTTGCATTGTGGGGTTAAAGTCTTCGCACGATAAATCCATTATCTTCA
*
99840410 TATATCTTGTATTGTGGGGTTAAAGTCTTCGCACGATAAATCCATTATCTT
1 TATATCTTGCATTGTGGGGTTAAAGTCTTCGCACGATAAATCCATTATCTT
99840461 AAAATCTTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (53 bp):
TATATCTTGCATTGTGGGGTTAAAGTCTTCGCACGATAAATCCATTATCTTCA
Found at i:99840536 original size:3 final size:3
Alignment explanation
Indices: 99840528--99840581 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
99840518 AACTAATTTA
99840528 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
99840576 ATT ATT
1 ATT ATT
99840582 TTTACAAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:99843179 original size:17 final size:18
Alignment explanation
Indices: 99843151--99843184 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
99843141 TTGGTTTCGG
*
99843151 TTTTTGATAATTTTTACA
1 TTTTTGATAATTGTTACA
99843169 TTTTTGA-AATTGTTAC
1 TTTTTGATAATTGTTAC
99843185 TTCGAATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (18 bp):
TTTTTGATAATTGTTACA
Found at i:99854403 original size:28 final size:28
Alignment explanation
Indices: 99854346--99854404 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
99854336 ATTAACCTTT
* * *
99854346 TATACATTATTTACTTTAGATATTTTTA
1 TATAAATTATTTACTTTAAATATTTATA
*
99854374 TATAAATTATTTATTTTAAACTA-TTATA
1 TATAAATTATTTACTTTAAA-TATTTATA
99854402 TAT
1 TAT
99854405 TTTAAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (28 bp):
TATAAATTATTTACTTTAAATATTTATA
Found at i:99854652 original size:22 final size:24
Alignment explanation
Indices: 99854604--99854663 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 24
99854594 CCTTTTTTTA
*
99854604 TATATTATTTATTTAAAACT-GTC
1 TATATTATTTATTTAAAACTATTC
* * *
99854627 T-TATTATTTATTTTAAATTATTT
1 TATATTATTTATTTAAAACTATTC
99854650 TATATTATTTATTT
1 TATATTATTTATTT
99854664 CATTTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 16 0.52
23 3 0.10
24 12 0.39
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (24 bp):
TATATTATTTATTTAAAACTATTC
Found at i:99859336 original size:41 final size:41
Alignment explanation
Indices: 99859291--99859408 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99859281 TGAAAGATAA
99859291 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99859332 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99859362 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99859403 ATGTAG
1 ATGTAG
99859409 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99859347 original size:71 final size:71
Alignment explanation
Indices: 99859259--99859422 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99859249 GAGATGTATC
99859259 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99859324 AGGACA
66 AGGACA
99859330 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99859395 AGGACA
66 AGGACA
99859401 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99859423 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99873546 original size:44 final size:44
Alignment explanation
Indices: 99873375--99873538 Score: 168
Period size: 44 Copynumber: 3.7 Consensus size: 44
99873365 TCATCATGGT
* * * * * **
99873375 GAATCTTATCTCTCTAAAGTTGCAGTGAAGCAGATTAAAACCAC
1 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCAC
* * * *
99873419 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCAC
1 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCAC
* * *
99873463 GAATCTCATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGTTAC
1 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCAC
* *
99873507 -AAGTTTTATGTCCCTGAAGTTGTAGTGGAGCA
1 GAA-TCTTATCTCCCTGAAGTTGTAGTGGAGCA
99873539 AACTGAAGAT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
43 2 0.02
44 97 0.98
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTCAC
Found at i:99874096 original size:21 final size:21
Alignment explanation
Indices: 99874071--99874112 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
99874061 GCAGTCCATT
*
99874071 TTTACAAACAT-CATGGCCCAA
1 TTTAC-AACATGCATAGCCCAA
99874092 TTTACAACATGCATAGCCCAA
1 TTTACAACATGCATAGCCCAA
99874113 ATAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.24
Consensus pattern (21 bp):
TTTACAACATGCATAGCCCAA
Found at i:99874345 original size:13 final size:14
Alignment explanation
Indices: 99874314--99874349 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
99874304 CTGTAACACG
*
99874314 CAAGCAAAAGAATC
1 CAAGCAGAAGAATC
99874328 CAAGCAGAAGAA-C
1 CAAGCAGAAGAATC
99874341 CAAGCAGAA
1 CAAGCAGAA
99874350 ACGACAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (14 bp):
CAAGCAGAAGAATC
Found at i:99875757 original size:23 final size:21
Alignment explanation
Indices: 99875724--99875775 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
99875714 ATTTTATAGG
*
99875724 TTATTCATTTTAAAATTTTTGTA
1 TTATT-ATTTTAAAATGTTT-TA
*
99875747 TTACTTATTTTAAGATGTTTTA
1 TTA-TTATTTTAAAATGTTTTA
99875769 TTATTAT
1 TTATTAT
99875776 ATATTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 5 0.19
23 15 0.58
24 2 0.08
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TTATTATTTTAAAATGTTTTA
Found at i:99875841 original size:82 final size:79
Alignment explanation
Indices: 99875732--99875950 Score: 195
Period size: 80 Copynumber: 2.8 Consensus size: 79
99875722 GGTTATTCAT
*
99875732 TTTAAAA-T-TTTTGTATTACTTATTTTAAGATGTTTTATTATTATATATTTTAAGTTTTTCTTT
1 TTTAAAATTGTTTTTTATTACTTA-TTTAAGATGTTTTATTATTATATATTTTAA-TTTTTCTTT
99875795 TTTTATACATTATTTA
64 TTTTATACATTATTTA
* * ** ***
99875811 TTTGAAATTGTTTTTATATTAGTTACTTTAAG-TCGTTTTATTTATTATCCATTTTAA--ACCCT
1 TTTAAAATTGTTTTT-TATTACTTA-TTTAAGAT-GTTTTA-TTATTATATATTTTAATTTTTCT
*
99875873 TTTTTTATATATTATTTA
62 TTTTTTATACATTATTTA
* * * *
99875891 TTTAAAATTG--TCTTATTATTTATTTAAAATTGTTTTA-TATTATTTATTTT-ATTTTTCTTT
1 TTTAAAATTGTTTTTTATTACTTATTTAAGA-TGTTTTATTATTATATATTTTAATTTTTCTTT
99875951 GATTATTAAT
Statistics
Matches: 112, Mismatches: 19, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
74 1 0.01
75 11 0.10
76 9 0.08
77 14 0.12
78 3 0.03
79 6 0.05
80 29 0.26
81 5 0.04
82 20 0.18
83 14 0.12
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (79 bp):
TTTAAAATTGTTTTTTATTACTTATTTAAGATGTTTTATTATTATATATTTTAATTTTTCTTTTT
TTATACATTATTTA
Found at i:99875908 original size:22 final size:24
Alignment explanation
Indices: 99875880--99875939 Score: 97
Period size: 22 Copynumber: 2.6 Consensus size: 24
99875870 CCTTTTTTTA
99875880 TATATTATTTATTTAAAATTG-TC
1 TATATTATTTATTTAAAATTGTTC
*
99875903 T-TATTATTTATTTAAAATTGTTT
1 TATATTATTTATTTAAAATTGTTC
99875926 TATATTATTTATTT
1 TATATTATTTATTT
99875940 TATTTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 19 0.56
23 3 0.09
24 12 0.35
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (24 bp):
TATATTATTTATTTAAAATTGTTC
Found at i:99877113 original size:30 final size:30
Alignment explanation
Indices: 99877039--99877121 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 30
99877029 ATTGTCATAT
*
99877039 AAGGCCTAACCTTTACAAAAGTGTTCAAAAG
1 AAGGCC-AACCTTTTCAAAAGTGTTCAAAAG
99877070 AAGGCTCAA-CTTTTCAAAA-TGTTCAAACA-
1 AAGGC-CAACCTTTTCAAAAGTGTTCAAA-AG
* *
99877099 ATGGCCAAACCTTTTCGAAAGTG
1 AAGGCC-AACCTTTTCAAAAGTG
99877122 CTTAAATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.02
29 14 0.32
30 19 0.43
31 9 0.20
32 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (30 bp):
AAGGCCAACCTTTTCAAAAGTGTTCAAAAG
Found at i:99880621 original size:7 final size:7
Alignment explanation
Indices: 99880611--99880672 Score: 124
Period size: 7 Copynumber: 8.9 Consensus size: 7
99880601 TTTTGAATAT
99880611 CCCTAAA
1 CCCTAAA
99880618 CCCTAAA
1 CCCTAAA
99880625 CCCTAAA
1 CCCTAAA
99880632 CCCTAAA
1 CCCTAAA
99880639 CCCTAAA
1 CCCTAAA
99880646 CCCTAAA
1 CCCTAAA
99880653 CCCTAAA
1 CCCTAAA
99880660 CCCTAAA
1 CCCTAAA
99880667 CCCTAA
1 CCCTAA
99880673 TATTATTTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 55 1.00
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAA
Found at i:99881669 original size:7 final size:7
Alignment explanation
Indices: 99881657--99881681 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
99881647 AGCCGTTTCA
99881657 TATTTAG
1 TATTTAG
99881664 TATTTAG
1 TATTTAG
99881671 TATTTAG
1 TATTTAG
99881678 TATT
1 TATT
99881682 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:99882305 original size:18 final size:18
Alignment explanation
Indices: 99882282--99882324 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
99882272 TACCAAGTGC
* *
99882282 GTATCCTAGCCTTTATAT
1 GTATCCTAACCCTTATAT
99882300 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
99882318 GTTTCCT
1 GTATCCT
99882325 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:99888378 original size:46 final size:46
Alignment explanation
Indices: 99888328--99888503 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
99888318 TGGTTGAGCA
99888328 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
99888374 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
99888419 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
99888467 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99888504 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.56
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:99888484 original size:93 final size:93
Alignment explanation
Indices: 99888325--99888496 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
99888315 GGATGGTTGA
* * *
99888325 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
99888390 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
99888418 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCATTGAG
99888482 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
99888497 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:99891441 original size:15 final size:15
Alignment explanation
Indices: 99891421--99891501 Score: 87
Period size: 15 Copynumber: 5.5 Consensus size: 15
99891411 ATATCTTGGG
99891421 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
*
99891436 TCTCTTTA-CTCTGGA
1 TTTCTTTATC-CTGGA
*
99891451 TTTCTTTATTCC-GGG
1 TTTCTTTA-TCCTGGA
*
99891466 TTTCTTTATCTTGGA
1 TTTCTTTATCCTGGA
*
99891481 TTTCTTTATTC-GGA
1 TTTCTTTATCCTGGA
99891495 TTTCTTT
1 TTTCTTT
99891502 TTATCTTTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
14 13 0.24
15 40 0.73
16 1 0.02
17 1 0.02
ACGTcount: A:0.11, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:99891457 original size:30 final size:29
Alignment explanation
Indices: 99891412--99891501 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 29
99891402 CATAGTATCA
*
99891412 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATCC-GGATCTCTT
* *
99891442 TA-CTCTGGATTTCTTTATTCCGGGTTTCTT
1 TATCT-TGGATTTCTTTA-TCCGGATCTCTT
* *
99891472 TATCTTGGATTTCTTTATTCGGATTTCTT
1 TATCTTGGATTTCTTTATCCGGATCTCTT
99891501 T
1 T
99891502 TTATCTTTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 13 0.25
30 34 0.65
31 5 0.10
ACGTcount: A:0.11, C:0.18, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATCCGGATCTCTT
Found at i:99894404 original size:47 final size:47
Alignment explanation
Indices: 99894335--99895195 Score: 1247
Period size: 47 Copynumber: 18.3 Consensus size: 47
99894325 CCCTTCGGAA
* * * *
99894335 CTTATCACATTTATACACTTTCACATCCATTACCTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
99894382 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99894429 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
99894476 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99894523 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
99894570 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
99894617 CTTATCACACATATGA-ACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATAT-ACACTTTCACATTCATCACATTGGCCACTCGGC
*
99894664 CTTATCACATACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99894711 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99894758 CTTATCACATACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * ** *
99894805 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCGTTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99894852 CTTATCACATACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99894899 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99894946 CTTATCACATACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99894993 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99895040 CTTATCACATACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * * *
99895087 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99895134 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
99895181 CTTATCACACATATA
1 CTTATCACATATATA
99895196 TGTATATCAT
Statistics
Matches: 717, Mismatches: 95, Indels: 4
0.88 0.12 0.00
Matches are distributed among these distances:
46 1 0.00
47 715 1.00
48 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:99894496 original size:94 final size:94
Alignment explanation
Indices: 99894335--99895194 Score: 1540
Period size: 94 Copynumber: 9.1 Consensus size: 94
99894325 CCCTTCGGAA
** * * * * * * * *
99894335 CTTATCACATTTATACACTTTCACATCCATTACCTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894400 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
* *
99894429 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894494 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
*
99894523 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894588 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
* *
99894617 CTTATCACACATATGAACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATACATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894682 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
*
99894711 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATACATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894776 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
* *
99894805 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCGTTGGGCCTTATCACATACATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894870 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
99894899 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99894964 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
99894993 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
99895058 TTTCACATTCATCACATTGGCCACTCGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
*
99895087 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
*
99895152 TTTCACATTCATCACATTGGCCACTTGGC
66 TTTCACATTCATCACATTGGCCACTCGGC
99895181 CTTATCACACATAT
1 CTTATCACACATAT
99895195 ATGTATATCA
Statistics
Matches: 747, Mismatches: 19, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 747 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACAC
TTTCACATTCATCACATTGGCCACTCGGC
Found at i:99898587 original size:46 final size:46
Alignment explanation
Indices: 99898537--99898712 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
99898527 TGGTTGAGCA
99898537 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
99898583 TCCGAACTCGTTGAGTTGAGTCCGGGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
99898628 CATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
99898676 -CTCGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99898713 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 57 0.56
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:99898705 original size:93 final size:93
Alignment explanation
Indices: 99898534--99898705 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
99898524 GGATGGTTGA
* * * *
99898534 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
*
99898599 TGAGTCCGGGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
99898627 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTC-CGAACTCATTGAG
*
99898691 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
99898706 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:99901610 original size:42 final size:42
Alignment explanation
Indices: 99901488--99901659 Score: 156
Period size: 42 Copynumber: 4.1 Consensus size: 42
99901478 ATAAAATTTT
* *
99901488 CTAGGC-ATAAAG-CCTAGTATCATACACCGGCACAGAA-CTTG
1 CTAGGCAATAAAGCCCTA-TATAATACACCGGCACA-AAGCCTG
* ** * * *
99901529 CTAGGCAAT--AGGCCTGGCATAAGACACTGGCATAAAGCCTG
1 CTAGGCAATAAAGCCCT-ATATAATACACCGGCACAAAGCCTG
*
99901570 CTAGGCAATAAAGCCCTATATAATACACCGGCATAAAGCCTG
1 CTAGGCAATAAAGCCCTATATAATACACCGGCACAAAGCCTG
* * * * *
99901612 CTAGGCAATAAAGCCCAATTTAATACACTGGCACAAGGCTTG
1 CTAGGCAATAAAGCCCTATATAATACACCGGCACAAAGCCTG
99901654 CTAGGC
1 CTAGGC
99901660 TCAAAGCCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
40 4 0.04
41 33 0.31
42 65 0.61
43 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (42 bp):
CTAGGCAATAAAGCCCTATATAATACACCGGCACAAAGCCTG
Found at i:99906348 original size:40 final size:40
Alignment explanation
Indices: 99906247--99906455 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
99906237 TACTCGAATG
* **
99906247 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTAACT
* *
99906288 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTAACT
* *
99906328 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * *
99906368 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * ** * *
99906408 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
99906448 ATATCCGG
1 ATATCCGG
99906456 TTAAACTCCA
Statistics
Matches: 145, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 115 0.79
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
Found at i:99916396 original size:40 final size:40
Alignment explanation
Indices: 99916291--99916499 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
99916281 TACTCGAATG
* * **
99916291 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGATAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTAACT
* * *
99916332 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTAACT
* * *
99916372 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * *
99916412 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * ** * *
99916452 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
99916492 ATATCCGG
1 ATATCCGG
99916500 TTAAACTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.80
41 26 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
Found at i:99919222 original size:22 final size:22
Alignment explanation
Indices: 99919196--99919240 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
99919186 AATTCCTGGA
99919196 ACTCAGGCAGGGAAATAAGACT
1 ACTCAGGCAGGGAAATAAGACT
99919218 ACTCAGGCAGGGAAATAAGACT
1 ACTCAGGCAGGGAAATAAGACT
99919240 A
1 A
99919241 TGTCAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.13
Consensus pattern (22 bp):
ACTCAGGCAGGGAAATAAGACT
Found at i:99925946 original size:40 final size:40
Alignment explanation
Indices: 99925887--99926090 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
99925877 TGAATGATAC
* * * * *
99925887 CCGGGCTAAGCCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
99925927 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
99925967 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
99926007 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
99926047 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
99926087 CCGG
1 CCGG
99926091 CTAAATTCCA
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 143 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:99926020 original size:80 final size:80
Alignment explanation
Indices: 99925883--99926094 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
99925873 CAATTGAATG
* * * *
99925883 ATACCCGGGCTAAGCCCCAAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCAAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
99925947 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
99925963 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCAAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
99926028 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
99926043 ATACCCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCAAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
99926095 ATTCCAAAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 6 0.05
80 110 0.93
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCAAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:99928391 original size:46 final size:47
Alignment explanation
Indices: 99928261--99928522 Score: 190
Period size: 46 Copynumber: 5.6 Consensus size: 47
99928251 ACATCGACGC
* * *
99928261 CATGTCCCAGACATGGTCTTACACAAGTTTAGCATATCTGT-GTTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTTA-CATATC-GTAGTCGATG
* *
99928309 CCATGTCCTAGACATGGTCTTACACT-GAC--ACATCTCGTAGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTAG-CTTACATATCGTAGTCGATG
* *
99928355 CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCG-AGGTTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTTACATATCGTA-GTCGATG
* * * * * *
99928401 CATGTTCGAGACAT-GTCTTACACTAGCACT-CATTTCAATA-CCGATG
1 CATGTCCCAGACATGGTCTTACACTAGC-TTACATATC-GTAGTCGATG
* * *
99928447 CCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GT-GACCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCT-TACAT-ATCGTAG-TCGATG
99928495 CATGTCCCAGACAT-GTCTTACACTAGCT
1 CATGTCCCAGACATGGTCTTACACTAGCT
99928523 CACACAAGTG
Statistics
Matches: 176, Mismatches: 22, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 11 0.06
45 17 0.10
46 72 0.41
47 28 0.16
48 24 0.14
49 24 0.14
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTACATATCGTAGTCGATG
Found at i:99934223 original size:20 final size:20
Alignment explanation
Indices: 99934196--99934247 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
99934186 TGGGCTGAGG
99934196 ACACGGGCGTGTCCTAAGAC
1 ACACGGGCGTGTCCTAAGAC
*
99934216 ATACGGGCGTGTCCTAAGAC
1 ACACGGGCGTGTCCTAAGAC
99934236 ACACGGGCGTGT
1 ACACGGGCGTGT
99934248 GTGACCATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.33, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCTAAGAC
Found at i:99935805 original size:41 final size:41
Alignment explanation
Indices: 99935760--99935841 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
99935750 TTAGCCATTC
99935760 CAATGGCTAATCATTACCAAGAATTTCCATACCACTCAATA
1 CAATGGCTAATCATTACCAAGAATTTCCATACCACTCAATA
99935801 CAATGGCTAATCATTACCAAGAATTTCCATACCACTCAATA
1 CAATGGCTAATCATTACCAAGAATTTCCATACCACTCAATA
99935842 ACCATATCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.27, G:0.07, T:0.27
Consensus pattern (41 bp):
CAATGGCTAATCATTACCAAGAATTTCCATACCACTCAATA
Found at i:99936484 original size:93 final size:92
Alignment explanation
Indices: 99936356--99936526 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
99936346 GCCCATAAGT
* *
99936356 GAACTCGGACTCAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
99936421 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
99936448 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAA-TCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
99936513 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
99936527 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 14 0.19
93 60 0.81
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:99936515 original size:46 final size:46
Alignment explanation
Indices: 99936348--99936522 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
99936338 TGTAACCCGC
* *
99936348 CCATAAGTGAACTCGGACTCAA-TCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
99936393 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
99936439 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
99936486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
99936523 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 22 0.20
46 47 0.43
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:99936541 original size:46 final size:46
Alignment explanation
Indices: 99936398--99936541 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
99936388 CGCATCCATA
* *
99936398 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
99936447 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
99936491 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
99936537 AGTGA
1 AGTGA
99936542 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.43
47 31 0.41
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:99946035 original size:45 final size:44
Alignment explanation
Indices: 99945975--99946144 Score: 138
Period size: 45 Copynumber: 3.9 Consensus size: 44
99945965 ATAGGATCCG
* * *
99945975 ATATGTGTTTTTGTGTAACACCACGTCTAGGACGTTGGCATCGAT
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCG-T
* * * *
99946020 ATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATCGT
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGT
* * *
99946064 AT-T-TGATT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG-
1 ATATGTGGTTATGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGT
* * *
99946104 ATATG-AGATATCATGTAAGACCACGTCTAGGACGTTGGCAT
1 ATATGTGGTTAT-GTGTAAGACCACGTCTAGGACGTTGGCAT
99946145 TGTTCGATAT
Statistics
Matches: 99, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
40 2 0.02
41 28 0.28
42 5 0.05
43 24 0.24
44 4 0.04
45 36 0.36
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (44 bp):
ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGT
Found at i:99946082 original size:41 final size:43
Alignment explanation
Indices: 99946032--99946144 Score: 126
Period size: 41 Copynumber: 2.7 Consensus size: 43
99946022 ATGTGGTTAT
**
99946032 GTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGAT-TC
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCGATATGAGATATC
*
99946073 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGAGATATC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGAGATATC
* * *
99946116 ATGTAAGACCACGTCTAGGAC-GTTGGCAT
1 GTGTAAGACCATGTCTGGGACAG-TGGCAT
99946145 TGTTCGATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
41 28 0.46
42 8 0.13
43 25 0.41
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGAGATATC
Found at i:99949259 original size:30 final size:30
Alignment explanation
Indices: 99949225--99949285 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
99949215 TCCTTAACTC
99949225 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
99949255 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
99949285 A
1 A
99949286 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Done.