Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 348 of 444
Found at i:100806778 original size:12 final size:12
Alignment explanation
Indices: 100806763--100806793 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
100806753 TTCTCTTTTA
100806763 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
100806775 TTTTTCTTTCTC
1 TTTTTCTTTCCC
100806787 TTTTTCT
1 TTTTTCT
100806794 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:100814380 original size:12 final size:12
Alignment explanation
Indices: 100814365--100814395 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
100814355 TTCTCTTTTA
100814365 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
100814377 TTTTTCTTTCTC
1 TTTTTCTTTCCC
100814389 TTTTTCT
1 TTTTTCT
100814396 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:100814496 original size:16 final size:16
Alignment explanation
Indices: 100814475--100814505 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100814465 TTTATTATTT
100814475 TATTAACATAATATAA
1 TATTAACATAATATAA
*
100814491 TATTAATATAATATA
1 TATTAACATAATATA
100814506 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:100830731 original size:3 final size:3
Alignment explanation
Indices: 100830723--100830839 Score: 66
Period size: 3 Copynumber: 38.7 Consensus size: 3
100830713 ATGCATAAAC
* * **
100830723 AAT AAT AAT AAT GAT GAA- AAT GAT AAT -AT AAAT AGC AAT AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
* * *
100830768 AAC AAT AAT AAT GAAT AAT ACA- AA- AATT GAA- AGT AA- AGT AAT AAAT
1 AAT AAT AAT AAT -AAT AAT A-AT AAT AA-T -AAT AAT AAT AAT AAT -AAT
100830814 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
100830840 GGGCAAGAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
2 9 0.10
3 67 0.76
4 10 0.11
5 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:100832772 original size:44 final size:43
Alignment explanation
Indices: 100832700--100832870 Score: 130
Period size: 44 Copynumber: 3.9 Consensus size: 43
100832690 AAGAATTGTT
** * *
100832700 GCTTCAATCTGCTCCACT-TTATTCTCAGGGAGATTAGACTCGTA
1 GCTTCAATCTGCTCCACTGCAACT-TCAAGGAGATTAGACT-GTA
* * ** *
100832744 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATGGGA-TTTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACTGTA
* * * * *
100832786 CTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGTG
1 --G-CTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACT-GTA
* *
100832833 GCTTCAATCTGTTCCACTGCAACTTCAAGAAGATTAGA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGA
100832871 TCCGCCATAA
Statistics
Matches: 99, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 61 0.62
45 33 0.33
46 1 0.01
47 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (43 bp):
GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACTGTA
Found at i:100832996 original size:44 final size:44
Alignment explanation
Indices: 100832948--100833044 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
100832938 GTCTGCTCTG
* *
100832948 CTGCAATTTCAGGGAGATGAGGCTGTTGGCTTCAATCTACTCCA
1 CTGCAACTTCAAGGAGATGAGGCTGTTGGCTTCAATCTACTCCA
* ** *
100832992 CTGCAACTTCAAGGAGATGAGGTTGTTGGCTTTTATCTGCTCCA
1 CTGCAACTTCAAGGAGATGAGGCTGTTGGCTTCAATCTACTCCA
*
100833036 CCGCAACTT
1 CTGCAACTT
100833045 TAGGAAGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (44 bp):
CTGCAACTTCAAGGAGATGAGGCTGTTGGCTTCAATCTACTCCA
Found at i:100833375 original size:45 final size:44
Alignment explanation
Indices: 100833213--100833377 Score: 138
Period size: 45 Copynumber: 3.7 Consensus size: 44
100833203 TGTAGCTTTA
* * * *
100833213 ATCTGTTCCACTG-AAATGTCAGGGAAATAAGATTCGCTGTCTTC
1 ATCTGCTCCACTGCAACT-TCAAGGAGATAAGATTCGCTGTCTTC
* * * ** * *
100833257 AGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCT-GGTGGCTTC
1 A-TCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTGTCTTC
* *
100833301 AATCTACTCCACTGCAACTTC-AGGAAGATAAGATTCGCTATCTTC
1 -ATCTGCTCCACTGCAACTTCAAGG-AGATAAGATTCGCTGTCTTC
*
100833346 GATCTGCTCCATTGCAACTTCAAGGAGATAAG
1 -ATCTGCTCCACTGCAACTTCAAGGAGATAAG
100833378 GTCTACAACT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
43 2 0.02
44 32 0.33
45 56 0.58
46 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTGTCTTC
Found at i:100833402 original size:320 final size:321
Alignment explanation
Indices: 100832784--100833377 Score: 838
Period size: 320 Copynumber: 1.9 Consensus size: 321
100832774 AGATGGGATT
*
100832784 TACTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGTTCCA
1 TACTGTCTTCAGTCTACTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGTTCCA
* * * *
100832849 CTGCAACTTCAAGAAGATTAGATCCGCCATAATTTGTAGCTTCAATATATTCCACTGTAACTTTA
66 CTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTCAATATATTCCACTGTAAATTCA
* * * * *
100832914 GGGAAATAAGATTCGATGTCTTCAGTCTGCTCTGCTGCAATTTCAGGGAGATGAGGCTGTTGGCT
131 GGGAAATAAGATTCGATGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCTGGTGGCT
* * * * **
100832979 TCAATCTACTCCACTGCAACTTCAAGGAGATGAGGTTGTTGGCTTTTATCTGCTCCACCGCAACT
196 TCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTGCTAGCTTCGATCTGCTCCACCGCAACT
* * *
100833044 TTAGGAAGATAAGATCCGCCATCTTCGATCTGCTCCATTGTAACTTCAAGGAGATAAAGTC
261 TAAGGAAGATAAGATCCGACAACTTCGATCTGCTCCATTGTAACTTCAAGGAGATAAAGTC
* * *
100833105 TACTGTCTTCAGTCTACTCCGCTGTAACTT-TAGGAGATAAGGCTGGTGGTTTCAATCTGCTT-C
1 TACTGTCTTCAGTCTACTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTG-TTCC
* * * *
100833168 ACTGCAACTTCAGGAAAATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTG-AAATGT
65 ACTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTCAATATATTCCACTGTAAAT-T
*
100833232 CAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCTGGTGG
129 CAGGGAAATAAGATTCGATGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCTGGTGG
* **
100833297 CTTCAATCTACTCCACTGCAACTTC-AGGAAGATAAGATTCGCTATCTTCGATCTGCTCCATTGC
194 CTTCAATCTACTCCACTGCAACTTCAAGG-AGATAAGATT-GCTAGCTTCGATCTGCTCCACCGC
100833361 AACTTCAAGG-AGATAAG
257 AACTT-AAGGAAGATAAG
100833378 GTCTACAACT
Statistics
Matches: 240, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
319 6 0.03
320 172 0.72
321 59 0.25
322 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (321 bp):
TACTGTCTTCAGTCTACTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGTTCCA
CTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTCAATATATTCCACTGTAAATTCA
GGGAAATAAGATTCGATGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCTGGTGGCT
TCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTGCTAGCTTCGATCTGCTCCACCGCAACT
TAAGGAAGATAAGATCCGACAACTTCGATCTGCTCCATTGTAACTTCAAGGAGATAAAGTC
Found at i:100834350 original size:11 final size:10
Alignment explanation
Indices: 100834331--100834406 Score: 71
Period size: 11 Copynumber: 6.9 Consensus size: 10
100834321 TGCCTTTCCT
100834331 TTTTCTTTTTCC
1 TTTT-TTTTT-C
*
100834343 TTTTTTTTTG
1 TTTTTTTTTC
100834353 TTTTTCTTTTC
1 TTTTT-TTTTC
*
100834364 TTCTTCTTTTTT
1 TT-TT-TTTTTC
100834376 TTTTGTTTTTC
1 TTTT-TTTTTC
100834387 TTTTGTTTTTC
1 TTTT-TTTTTC
100834398 TTTTTTTTT
1 TTTTTTTTT
100834407 AAATTTTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
10 10 0.18
11 33 0.59
12 12 0.21
13 1 0.02
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:100834356 original size:17 final size:17
Alignment explanation
Indices: 100834330--100834406 Score: 57
Period size: 17 Copynumber: 4.3 Consensus size: 17
100834320 TTGCCTTTCC
*
100834330 TTTTTCTTTTTCCTTTT
1 TTTTTGTTTTTCCTTTT
*
100834347 TTTTTGTTTTTCTTTTCTT
1 TTTTTGTTTTTC-CTT-TT
* **
100834366 CTTCTTTTTTTTTTGTTTT
1 -TT-TTTGTTTTTCCTTTT
100834385 TCTTTTGTTTTT-CTTTT
1 T-TTTTGTTTTTCCTTTT
100834402 TTTTT
1 TTTTT
100834407 AAATTTTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
16 4 0.08
17 16 0.33
18 11 0.23
19 5 0.10
20 4 0.08
21 8 0.17
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (17 bp):
TTTTTGTTTTTCCTTTT
Found at i:100834363 original size:28 final size:28
Alignment explanation
Indices: 100834331--100834406 Score: 118
Period size: 28 Copynumber: 2.8 Consensus size: 28
100834321 TGCCTTTCCT
100834331 TTTTCTTTTTCCTTTTTTTTTGTTTTTC
1 TTTTCTTTTTCCTTTTTTTTTGTTTTTC
* *
100834359 TTTTCTTCTTCTTTTTTTTTTGTTTTTC
1 TTTTCTTTTTCCTTTTTTTTTGTTTTTC
*
100834387 TTTTGTTTTT-CTTTTTTTTT
1 TTTTCTTTTTCCTTTTTTTTT
100834407 AAATTTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 9 0.21
28 34 0.79
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (28 bp):
TTTTCTTTTTCCTTTTTTTTTGTTTTTC
Found at i:100838710 original size:6 final size:6
Alignment explanation
Indices: 100838701--100838727 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
100838691 ACTTTGATTT
100838701 TGAAAA TGAAAA TGAAAA TGAAAA TGA
1 TGAAAA TGAAAA TGAAAA TGAAAA TGA
100838728 GAGTTGCCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.19
Consensus pattern (6 bp):
TGAAAA
Found at i:100839718 original size:62 final size:62
Alignment explanation
Indices: 100839636--100839800 Score: 235
Period size: 62 Copynumber: 2.7 Consensus size: 62
100839626 GATGAAAATG
**
100839636 ATAATATAAATAGCAATAATAATAACAATAATAATGAATAATACAAAAATTAAAAGTAAAGTA
1 ATAA-ATAAATAATAATAATAATAACAATAATAATGAATAATACAAAAATTAAAAGTAAAGTA
*** * *
100839699 ATAAATAAATAATAATAATAAGGGCAAGAATAATGAATAATACAAAAATTGAAAGTAAAGTA
1 ATAAATAAATAATAATAATAATAACAATAATAATGAATAATACAAAAATTAAAAGTAAAGTA
*
100839761 ATAAAT-AATAATAATAATAATAATAATAATAAT-AATAATA
1 ATAAATAAATAATAATAATAATAACAATAATAATGAATAATA
100839801 ATAAGGGCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
60 7 0.08
61 22 0.24
62 57 0.63
63 4 0.04
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (62 bp):
ATAAATAAATAATAATAATAATAACAATAATAATGAATAATACAAAAATTAAAAGTAAAGTA
Found at i:100839772 original size:3 final size:3
Alignment explanation
Indices: 100839759--100839804 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
100839749 GAAAGTAAAG
100839759 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
100839805 GGGCAAGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:100845406 original size:47 final size:47
Alignment explanation
Indices: 100845310--100845487 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 47
100845300 GGAAATTGAG
* * * * * ** *
100845310 ATCCGAACTCGTTGAGTTGTGGTCCGAGTTCGTGA-GAATTATGAGGC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGA-TGCGAAGC
*
100845357 ATCCGAACTCGTTGAGTTGCATTCCGAGTTCACTTATGGATGC-AAGC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCGAAGC
*
100845404 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-C
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCGAAGC
* * *
100845450 ACCCGAGCTCGTTGAGTTGCGTTTCGAGTTCATTATGG
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
100845488 GTGAGATTAT
Statistics
Matches: 113, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
46 45 0.40
47 63 0.56
48 3 0.03
49 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCGAAGC
Found at i:100845461 original size:46 final size:46
Alignment explanation
Indices: 100845359--100845487 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 46
100845349 TATGAGGCAT
* *
100845359 CCGAACTCGTTGAGTTGCATTCCGAGTTCACTTATGGATGCAAGCAT
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCAC
*
100845406 CCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-CAC
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGC-AAGCAC
* *
100845452 CCGAGCTCGTTGAGTTGCGTTTCGAGTTCATTATGG
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
100845488 GTGAGATTAT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 45 0.60
47 30 0.40
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCAC
Found at i:100847886 original size:22 final size:24
Alignment explanation
Indices: 100847860--100847903 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
100847850 ATGGACAAAA
100847860 TTAAA-ATA-GAAAAAAATAAATT
1 TTAAATATACGAAAAAAATAAATT
*
100847882 TTAAATATACGAAAAATATAAA
1 TTAAATATACGAAAAAAATAAA
100847904 GATTTGAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 3 0.16
24 11 0.58
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (24 bp):
TTAAATATACGAAAAAAATAAATT
Found at i:100848300 original size:25 final size:24
Alignment explanation
Indices: 100848270--100848316 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
100848260 TAAATTCTTA
100848270 ATTTG-ATTTATTATTTTAAAAATAT
1 ATTTGAATTT-TT-TTTTAAAAATAT
*
100848295 ATTTGAATTTTTTTTTGAAAAT
1 ATTTGAATTTTTTTTTAAAAAT
100848317 TTCATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 7 0.35
26 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57
Consensus pattern (24 bp):
ATTTGAATTTTTTTTTAAAAATAT
Found at i:100851051 original size:3 final size:3
Alignment explanation
Indices: 100851043--100851077 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
100851033 CTATCAAAAA
*
100851043 ATT ATT ATT ATT ATT CTT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
100851078 AAAATTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:100852292 original size:15 final size:14
Alignment explanation
Indices: 100852268--100852301 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
100852258 ATCCCACCCC
100852268 ATATACATATACAG
1 ATATACATATACAG
*
100852282 AATATAGATATACAG
1 -ATATACATATACAG
100852297 ATATA
1 ATATA
100852302 ACAGAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (14 bp):
ATATACATATACAG
Found at i:100855749 original size:13 final size:13
Alignment explanation
Indices: 100855731--100855757 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100855721 CAACTAAAGA
100855731 TTCACCCCTCAAT
1 TTCACCCCTCAAT
100855744 TTCACCCCTCAAT
1 TTCACCCCTCAAT
100855757 T
1 T
100855758 GTTTATCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (13 bp):
TTCACCCCTCAAT
Found at i:100859016 original size:11 final size:11
Alignment explanation
Indices: 100859000--100859026 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
100858990 TTATCAGAAG
100859000 TTTCAGAAATC
1 TTTCAGAAATC
100859011 TTTCAGAAATC
1 TTTCAGAAATC
100859022 TTTCA
1 TTTCA
100859027 AAAGTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (11 bp):
TTTCAGAAATC
Found at i:100862313 original size:44 final size:44
Alignment explanation
Indices: 100862245--100862333 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
100862235 ATTACATGTA
* * *
100862245 TCGCATCCATTATGAGCTCGGACCAACTCAACGAGCT-GAGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCG-GATGC
100862289 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
100862333 T
1 T
100862334 TCACATATAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
Found at i:100864238 original size:17 final size:18
Alignment explanation
Indices: 100864199--100864241 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
100864189 CAAAATTTTG
*
100864199 GGCCCACATGCTCGTGTT
1 GGCCCACACGCTCGTGTT
100864217 GGCCCACACGCTCGTG-T
1 GGCCCACACGCTCGTGTT
100864234 GGCCCACA
1 GGCCCACA
100864242 TCGCCTAGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.14, C:0.40, G:0.28, T:0.19
Consensus pattern (18 bp):
GGCCCACACGCTCGTGTT
Found at i:100865484 original size:25 final size:26
Alignment explanation
Indices: 100865430--100865485 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
100865420 CTTATCATCT
*
100865430 TAAAAAAATCTACCATAAATTTTTTT
1 TAAAAAAATCTACCATAAATTTTTTC
* *
100865456 TAAAAAAA-CTATCAT-TATTTTCTTC
1 TAAAAAAATCTACCATAAATTTT-TTC
100865481 TAAAA
1 TAAAA
100865486 GATACTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 5 0.19
25 13 0.50
26 8 0.31
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (26 bp):
TAAAAAAATCTACCATAAATTTTTTC
Found at i:100865887 original size:16 final size:16
Alignment explanation
Indices: 100865866--100865901 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
100865856 ATTTTTTTTG
100865866 AAATTTTAAATTTAAA
1 AAATTTTAAATTTAAA
100865882 AAATTTTAAATTTAAA
1 AAATTTTAAATTTAAA
100865898 AAAT
1 AAAT
100865902 AGTTAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATTTTAAATTTAAA
Found at i:100865909 original size:16 final size:16
Alignment explanation
Indices: 100865866--100865907 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
100865856 ATTTTTTTTG
*
100865866 AAATTTTAAATTTAAA
1 AAATGTTAAATTTAAA
*
100865882 AAATTTTAAATTTAAA
1 AAATGTTAAATTTAAA
100865898 AAATAGTTAA
1 AAAT-GTTAA
100865908 TTGCTGACGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
AAATGTTAAATTTAAA
Found at i:100869478 original size:131 final size:130
Alignment explanation
Indices: 100869237--100869621 Score: 482
Period size: 131 Copynumber: 2.9 Consensus size: 130
100869227 TCATTCATTC
* * * * *
100869237 AAAATTCTTCAAAACGAAGACGAGATTTGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTTT
1 AAAATTCTTTAAAACAAAGGCGAGATTTGATATTTG-CAATTCGCGGAATCGTGCCCTAACGTGT
* * **
100869302 TGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCGCTTCAAAATTTCACTCATGTCTTT
65 TGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
100869367 T
130 T
* * *
100869368 AAAATTCTTTGAAACAAAGGCGAGATTCGATATTTAGCAATTCGCGGAATTGTGCCCTAACGTGT
1 AAAATTCTTTAAAACAAAGGCGAGATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACGTGT
** * * * *
100869433 TGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCTCTTCAAAATTTTACTCATCCCTTT
65 TGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
100869498 T
130 T
** * * * *
100869499 AAGAACCCTTTAAAACAAAGGCAAGGTTTGATATTTGGTAATTCGTGGAATCGTGCCCTAACGTG
1 AA-AATTCTTTAAAACAAAGGCGAGATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
100869564 TTGGGTTGCGATTTCTCATTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTC
64 TTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
100869622 GTATCCTTTA
Statistics
Matches: 216, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
131 114 0.53
132 102 0.47
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (130 bp):
AAAATTCTTTAAAACAAAGGCGAGATTTGATATTTGCAATTCGCGGAATCGTGCCCTAACGTGTT
GGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTTT
Found at i:100869578 original size:132 final size:131
Alignment explanation
Indices: 100869274--100869621 Score: 462
Period size: 132 Copynumber: 2.6 Consensus size: 131
100869264 TGATGTTTGA
* *
100869274 CAATTCGCGGAATCGTGCCCTAACGTTTTGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAAT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAAT
* ** ** * *
100869339 ATCGCTTCAAAATTTCACTCATGTCTTTTAAAATTCTTTGAAACAAAGGCGAGATTCGATATTTA
66 ATCCCTTCAAAATTTCACTCATCCCTTTTAAAACCCTTTAAAACAAAGGCAAGATTCGATATTTA
100869404 G
131 G
* ** * *
100869405 CAATTCGCGGAATTGTGCCCTAACGTGTTGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAAT
* * * *
100869470 ATCTCTTCAAAATTTTACTCATCCCTTTTAAGAACCCTTTAAAACAAAGGCAAGGTTTGATATTT
66 ATCCCTTCAAAATTTCACTCATCCCTTTTAA-AACCCTTTAAAACAAAGGCAAGATTCGATATTT
*
100869535 GG
130 AG
* * * * *
100869537 TAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCGATTTCTCATTTGCTCGAAATAATCAAAT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAAT
*
100869602 AACCCTTCAAAATTTCACTC
66 ATCCCTTCAAAATTTCACTC
100869622 GTATCCTTTA
Statistics
Matches: 186, Mismatches: 30, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
131 85 0.46
132 101 0.54
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (131 bp):
CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAAT
ATCCCTTCAAAATTTCACTCATCCCTTTTAAAACCCTTTAAAACAAAGGCAAGATTCGATATTTA
G
Found at i:100881288 original size:44 final size:44
Alignment explanation
Indices: 100881224--100881703 Score: 633
Period size: 44 Copynumber: 10.9 Consensus size: 44
100881214 GGCAAATCCT
*
100881224 GCAGATTTGGCATCCCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*** * * * *
100881268 GCAGATTTGATGTCTTTGTATTGGCGGAGAGTAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
100881312 GTAGATTTGGCATCTCTGTATTGG-AGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCA-GAGAGCAGATCGAAGATA
* * * * *
100881356 GCAGATTTGGCGTTTTTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
100881400 GTAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
100881444 GCAGATTTGGCGTCTCTGTATCGGC-GAAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAG-AGAGCAGATCGAAGATA
* *
100881488 GTAGATTTGGCATCTCTGCATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
100881532 GCAGATTTAG-AGTCTTTGCATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCA-TCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
100881576 GCAGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCCAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
100881620 GTAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
100881664 GTAGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA
100881704 AATAACAAAT
Statistics
Matches: 379, Mismatches: 51, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
43 2 0.01
44 376 0.99
45 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.26
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:100881375 original size:88 final size:88
Alignment explanation
Indices: 100881226--100881703 Score: 715
Period size: 88 Copynumber: 5.4 Consensus size: 88
100881216 CAAATCCTGC
* **
100881226 AGATTTGGCATCCCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGATGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
* *
100881291 GCGGAGAGTAGATCAAAGATAGT
66 GCGGAGAGCAGATCGAAGATAGT
*
100881314 AGATTTGGCATCTCTGTATTGG-AGGAGAGCAGATCGAAGATAGCAGATTTGGCGTTTTTGTATT
1 AGATTTGGCATCTCTGTATTGGCA-GAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATT
*
100881378 GGCGGAGAGCAGATCAAAGATAGT
65 GGCGGAGAGCAGATCGAAGATAGT
* * *
100881402 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATCG
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
*
100881467 GCGAAGAGCAGATCGAAGATAGT
66 GCGGAGAGCAGATCGAAGATAGT
* * * *
100881490 AGATTTGGCATCTCTGCATTGGCAGAGAGCAGATCGAAGATAGCAGATTTAGAGTCTTTGCATTG
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
*
100881555 GCGGAGAGCAGATCGAAGATAGC
66 GCGGAGAGCAGATCGAAGATAGT
* * * * * *
100881578 AGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCCAAGATAGTAGATTTGGCATCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
*
100881643 GCAGAGAGCAGATCGAAGATAGT
66 GCGGAGAGCAGATCGAAGATAGT
* *
100881666 AGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAA
1 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA
100881704 AATAACAAAT
Statistics
Matches: 351, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
87 1 0.00
88 350 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (88 bp):
AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
GCGGAGAGCAGATCGAAGATAGT
Found at i:100884739 original size:131 final size:130
Alignment explanation
Indices: 100884498--100884895 Score: 481
Period size: 131 Copynumber: 3.0 Consensus size: 130
100884488 TCATTCATTC
* * * * *
100884498 AAAATTCTTCAAAACGAAGACGAGATTTGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTTT
1 AAAATTCTTCAAAACGAAGGCGAGATTTGATATTTG-CAATTCGAGGAATCGTGCCCTAATGTGT
*** * *
100884563 TGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
65 TGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTT
100884628 T
130 T
* * *
100884629 AAAATTCTTCGAAACGAAGGCGAGATTCGATATTTAGCAATTCGAGGAATTGTGCCCTAATGTGT
1 AAAATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGAGGAATCGTGCCCTAATGTGT
* * * **
100884694 TGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCCCTTCAAAATTTTACTCATCCCTTT
65 TGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTT
100884759 T
130 T
** * * * * * *
100884760 AAGAACCCTTTAAAACAAAGGCAAGGTTTGATATTTGGTAATTCGTGGAATCGTGCCCTAATGTG
1 AA-AATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGAGGAATCGTGCCCTAATGTG
* * * * *
100884825 TTGGGTTGCGATTTCTTGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTCATATCCT
64 TTGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTT
100884890 TT
129 TT
100884892 AAAA
1 AAAA
100884896 CGAAGCTAAT
Statistics
Matches: 227, Mismatches: 38, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
131 116 0.51
132 111 0.49
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (130 bp):
AAAATTCTTCAAAACGAAGGCGAGATTTGATATTTGCAATTCGAGGAATCGTGCCCTAATGTGTT
GGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTTT
Found at i:100884893 original size:132 final size:130
Alignment explanation
Indices: 100884504--100884896 Score: 437
Period size: 132 Copynumber: 3.0 Consensus size: 130
100884494 ATTCAAAATT
* * * * * * * *
100884504 CTTCAAAACGAAGACGAGATTTGATGTTT-GACAATTCGCGGAATCGTGCCCTAACGTTTTGGGT
1 CTTCAAAACAAAGGCAAGATTCGATATTTAG-CAATTCGAGGAATCGTGCCCTAATGTGTTGGGT
*** * *
100884568 TGCAATTTCGCATTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTTTAAAA
65 TGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCAT-TCCTTTAAAA
**
100884633 TT
129 CC
* * * *
100884635 CTTCGAAACGAAGGCGAGATTCGATATTTAGCAATTCGAGGAATTGTGCCCTAATGTGTTGGGTT
1 CTTCAAAACAAAGGCAAGATTCGATATTTAGCAATTCGAGGAATCGTGCCCTAATGTGTTGGGTT
* * * *
100884700 GCAATTTCTTGTTTGCTCTAAATAATCGAGTATCCCTTCAAAATTTTACTCATCCCTTTTAAGAA
66 GCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATTCC-TTTAA-AA
100884765 CC
129 CC
* * * * * *
100884767 CTTTAAAACAAAGGCAAGGTTTGATATTTGGTAATTCGTGGAATCGTGCCCTAATGTGTTGGGTT
1 CTTCAAAACAAAGGCAAGATTCGATATTTAGCAATTCGAGGAATCGTGCCCTAATGTGTTGGGTT
* * * *
100884832 GCGATTTCTTGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTCATATCCTTTAAAAC
66 GCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCAT-TCCTTTAAAAC
100884897 GAAGCTAATA
Statistics
Matches: 222, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
130 1 0.00
131 109 0.49
132 110 0.50
133 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (130 bp):
CTTCAAAACAAAGGCAAGATTCGATATTTAGCAATTCGAGGAATCGTGCCCTAATGTGTTGGGTT
GCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATTCCTTTAAAACC
Found at i:100889059 original size:2 final size:2
Alignment explanation
Indices: 100889052--100889077 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
100889042 GTTGATTTGG
100889052 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
100889078 AACATATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100894936 original size:18 final size:17
Alignment explanation
Indices: 100894903--100894941 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
100894893 TATAAATGTT
100894903 ATAATAATAATAAAAGTA
1 ATAATAATAATAAAAG-A
100894921 ATAATAATAA-AGAAAGA
1 ATAATAATAATA-AAAGA
100894938 ATAA
1 ATAA
100894942 AGAAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (17 bp):
ATAATAATAATAAAAGA
Found at i:100897462 original size:14 final size:14
Alignment explanation
Indices: 100897445--100897473 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
100897435 TGTATTAAGA
100897445 TCATTGTATATAAT
1 TCATTGTATATAAT
100897459 TCATTGTATATAAT
1 TCATTGTATATAAT
100897473 T
1 T
100897474 GTAAAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TCATTGTATATAAT
Found at i:100898281 original size:35 final size:35
Alignment explanation
Indices: 100898242--100898399 Score: 133
Period size: 35 Copynumber: 4.5 Consensus size: 35
100898232 TGTTGACACA
** *
100898242 TAGGGTTCACATAGTATATAGACTCACATATTAAC
1 TAGGGTTCACATAACATATAGACTCACATAGTAAC
* * * *
100898277 TAGGGTTCACATAACATATAGGCTCGCATGGTAGC
1 TAGGGTTCACATAACATATAGACTCACATAGTAAC
* ** *
100898312 TAGGGTTCACATAACAGT-TAGGCTTGCAGT-GTACC
1 TAGGGTTCACATAACA-TATAGACTCACA-TAGTAAC
** * *
100898347 TAGGGTTCACATAACATATAGGTTCGCATA-CAACC
1 TAGGGTTCACATAACATATAGACTCACATAGTAA-C
100898382 TAGGGTTCACATAACATA
1 TAGGGTTCACATAACATA
100898400 GTTTGCATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
34 3 0.03
35 100 0.95
36 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (35 bp):
TAGGGTTCACATAACATATAGACTCACATAGTAAC
Found at i:100898319 original size:70 final size:70
Alignment explanation
Indices: 100898242--100898397 Score: 172
Period size: 70 Copynumber: 2.2 Consensus size: 70
100898232 TGTTGACACA
** *
100898242 TAGGGTTCACATAGTA-TATAGACTCACA-TATTAACTAGGGTTCACATAACATATAGGCTCGCA
1 TAGGGTTCACATAACAGT-TAGACTCACAGT-GTAACTAGGGTTCACATAACATATAGGCTCGCA
*** *
100898305 TGGTAGC
64 TACAACC
* ** * *
100898312 TAGGGTTCACATAACAGTTAGGCTTGCAGTGTACCTAGGGTTCACATAACATATAGGTTCGCATA
1 TAGGGTTCACATAACAGTTAGACTCACAGTGTAACTAGGGTTCACATAACATATAGGCTCGCATA
100898377 CAACC
66 CAACC
100898382 TAGGGTTCACATAACA
1 TAGGGTTCACATAACA
100898398 TAGTTTGCAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
70 70 0.97
71 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (70 bp):
TAGGGTTCACATAACAGTTAGACTCACAGTGTAACTAGGGTTCACATAACATATAGGCTCGCATA
CAACC
Found at i:100898394 original size:18 final size:19
Alignment explanation
Indices: 100898343--100898399 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 19
100898333 GCTTGCAGTG
100898343 TACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
*
100898363 TA--TA-GGTTCGCATACA
1 TACCTAGGGTTCACATACA
100898379 -ACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
100898398 TA
1 TA
100898400 GTTTGCATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 1 0.03
16 3 0.10
17 10 0.33
18 10 0.33
19 3 0.10
20 3 0.10
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (19 bp):
TACCTAGGGTTCACATACA
Found at i:100900019 original size:21 final size:21
Alignment explanation
Indices: 100899995--100900035 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
100899985 TGCAATCGAC
*
100899995 AGGCTATGTCACAAGACATGT
1 AGGCCATGTCACAAGACATGT
* *
100900016 AGGCCATGTCGCGAGACATG
1 AGGCCATGTCACAAGACATG
100900036 CTACCTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
AGGCCATGTCACAAGACATGT
Found at i:100902312 original size:25 final size:25
Alignment explanation
Indices: 100902282--100902375 Score: 102
Period size: 25 Copynumber: 3.7 Consensus size: 25
100902272 AGCTAATATT
* *
100902282 GGGAAGCTCCGGAGAGCCATTAATC
1 GGGAAGCTCTGAAGAGCCATTAATC
*
100902307 GGGAAGCTCATGAAAGAGCCTTTAATC
1 GGGAAGCTC-TG-AAGAGCCATTAATC
100902334 GGGAAGCTCTGAAGAGCCA-TATATC
1 GGGAAGCTCTGAAGAGCCATTA-ATC
*
100902359 GGGACGCTCAT-AAGAGC
1 GGGAAGCTC-TGAAGAGC
100902376 TGCAGTGTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
24 2 0.03
25 33 0.55
26 4 0.07
27 21 0.35
ACGTcount: A:0.31, C:0.21, G:0.30, T:0.18
Consensus pattern (25 bp):
GGGAAGCTCTGAAGAGCCATTAATC
Found at i:100902324 original size:27 final size:26
Alignment explanation
Indices: 100902294--100902375 Score: 107
Period size: 25 Copynumber: 3.2 Consensus size: 26
100902284 GAAGCTCCGG
100902294 AGAGCCATTAATCGGGAAGCTCATGAA
1 AGAGCCATTAATCGGGAAGCTCATG-A
*
100902321 AGAGCCTTTAATCGGGAAGCTC-TGA
1 AGAGCCATTAATCGGGAAGCTCATGA
*
100902346 AGAGCCA-TATATCGGGACGCTCAT-A
1 AGAGCCATTA-ATCGGGAAGCTCATGA
100902371 AGAGC
1 AGAGC
100902376 TGCAGTGTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.04
25 24 0.48
26 3 0.06
27 21 0.42
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATCGGGAAGCTCATGA
Found at i:100905681 original size:16 final size:16
Alignment explanation
Indices: 100905660--100905693 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
100905650 TCGACTAGGC
100905660 TTAATATATGAATAAA
1 TTAATATATGAATAAA
100905676 TTAATATATGAATAAA
1 TTAATATATGAATAAA
100905692 TT
1 TT
100905694 CGATAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
TTAATATATGAATAAA
Found at i:100914748 original size:19 final size:19
Alignment explanation
Indices: 100914711--100914748 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
100914701 ACCTATCAGA
*
100914711 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
100914730 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
100914749 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:100916981 original size:41 final size:41
Alignment explanation
Indices: 100916899--100917012 Score: 169
Period size: 41 Copynumber: 2.8 Consensus size: 41
100916889 AGGTTTTTGC
* * *
100916899 ACACGGGCTA-GGACACGGGCGTGTCATGGCCGTGTGTAGG
1 ACACGGGCCAGGGACACGGGTGTGTCATGGCCGTGTGAAGG
100916939 ACACGGGCCAGGGACACGGGTGTGTCATGGCCGTGTGAAGG
1 ACACGGGCCAGGGACACGGGTGTGTCATGGCCGTGTGAAGG
100916980 ACACGGGCCAGGGACACGGGCGTGTGTCA-GGCC
1 ACACGGGCCAGGGACAC-GG-GTGTGTCATGGCC
100917013 ATATGAAAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
40 9 0.13
41 45 0.66
42 6 0.09
43 8 0.12
ACGTcount: A:0.18, C:0.25, G:0.43, T:0.14
Consensus pattern (41 bp):
ACACGGGCCAGGGACACGGGTGTGTCATGGCCGTGTGAAGG
Found at i:100920245 original size:21 final size:21
Alignment explanation
Indices: 100920221--100920260 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
100920211 AAACGAGCAA
*
100920221 GGGCGGAATGGCACGATGGAC
1 GGGCAGAATGGCACGATGGAC
100920242 GGGCAGAATGGCACGATGG
1 GGGCAGAATGGCACGATGG
100920261 GCGGTGGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.17, G:0.47, T:0.10
Consensus pattern (21 bp):
GGGCAGAATGGCACGATGGAC
Found at i:100922779 original size:21 final size:20
Alignment explanation
Indices: 100922738--100922780 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
100922728 GAAGAAGAAG
* * *
100922738 AAGAGGATGATGAGGATGAT
1 AAGAGGACGATGAGAAGGAT
100922758 AAGATGGACGATGAGAAGGAT
1 AAGA-GGACGATGAGAAGGAT
100922779 AA
1 AA
100922781 TTGAACAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.44, C:0.02, G:0.37, T:0.16
Consensus pattern (20 bp):
AAGAGGACGATGAGAAGGAT
Found at i:100923896 original size:26 final size:26
Alignment explanation
Indices: 100923860--100923969 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
100923850 TGATACAAAT
100923860 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
100923886 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
100923912 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
100923938 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
100923964 TGATAA
1 TGATAA
100923970 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:100925449 original size:28 final size:26
Alignment explanation
Indices: 100925404--100925478 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
100925394 AAAAGTAGCT
* *
100925404 AAATTACTATAATGCCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-ATGGA
* * *
100925432 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTATTATACCCCTAGATGGA
*
100925458 AAATTACCATTATACCCCTAG
1 AAATTACTATTATACCCCTAG
100925479 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGATGGA
Found at i:100925623 original size:27 final size:27
Alignment explanation
Indices: 100925582--100925720 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
100925572 GAGGAAGCGT
* *
100925582 TCTGGTGGCTATGCCATAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
100925609 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
100925636 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
100925663 TCTGGTGGC-CTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
100925690 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
100925716 TCTGG
1 TCTGG
100925721 CAGCCATGCT
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
26 18 0.18
27 75 0.76
28 6 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:100925667 original size:54 final size:54
Alignment explanation
Indices: 100925582--100925720 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
100925572 GAGGAAGCGT
* * * *
100925582 TCTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGC-CTGCCACAAATATCTGTA
* *
100925636 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
* *
100925690 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
100925721 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
53 26 0.34
54 50 0.66
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
Found at i:100925741 original size:53 final size:54
Alignment explanation
Indices: 100925582--100925741 Score: 155
Period size: 54 Copynumber: 3.0 Consensus size: 54
100925572 GAGGAAGCGT
* * * * * **
100925582 TCTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGACTCTGCCACATATATCTGTTCTGGCAGC-CTGCCACAAATATCTGTA
* ** * *
100925636 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACGATTATCTGTA
1 TCTGGTGACTCTGCCACATATATCTGTTCTGGCAGCCTGCCACAAATATCTGTA
* *
100925690 TCTGGTGACTCTGTCACAT-TATCTGTTCTGGCAGCCATGCTACAAAT-TCTGT
1 TCTGGTGACTCTGCCACATATATCTGTTCTGGCAGCC-TGCCACAAATATCTGT
100925742 GGTGTGTAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 34 0.37
54 57 0.63
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (54 bp):
TCTGGTGACTCTGCCACATATATCTGTTCTGGCAGCCTGCCACAAATATCTGTA
Found at i:100929753 original size:26 final size:25
Alignment explanation
Indices: 100929692--100929773 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 25
100929682 TGATACAAAT
100929692 TGATAA-AGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
100929716 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
100929742 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
100929768 TGATAA
1 TGATAA
100929774 GAATTTCATG
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
24 6 0.11
25 16 0.30
26 30 0.56
27 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:100931251 original size:28 final size:26
Alignment explanation
Indices: 100931209--100931283 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
100931199 AAAAGTAGCT
* *
100931209 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
100931237 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
100931263 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
100931284 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:100931428 original size:27 final size:27
Alignment explanation
Indices: 100931387--100931525 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
100931377 GAGGAAGCGT
*
100931387 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
100931414 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
100931441 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
100931468 TCTGGTGGC-CTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
100931495 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
100931521 TCTGG
1 TCTGG
100931526 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 18 0.18
27 76 0.76
28 6 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:100931472 original size:54 final size:54
Alignment explanation
Indices: 100931387--100931525 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
100931377 GAGGAAGCGT
* * *
100931387 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGC-CTGCCACAAATATCTGTA
* *
100931441 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
* *
100931495 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
100931526 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 26 0.34
54 51 0.66
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCTGCCACAAATATCTGTA
Found at i:100934489 original size:43 final size:43
Alignment explanation
Indices: 100934439--100934561 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 43
100934429 GAGGTGTGAT
*
100934439 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATGA-GA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
100934481 TTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATAT-ATGA
1 TT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
* * **
100934523 TTCGTGTAAGACCCTGTATGGGACAGAGGCATCGATATG
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
100934562 TGAAAACATG
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
41 28 0.39
42 14 0.19
43 30 0.42
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
Found at i:100941794 original size:45 final size:45
Alignment explanation
Indices: 100941745--100941830 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
100941735 AGGGGATAAA
100941745 ATGCAAAATGCCCATTTATGGGTTTTTGGATAAAATTGAAAGGAT
1 ATGCAAAATGCCCATTTATGGGTTTTTGGATAAAATTGAAAGGAT
*
100941790 ATGCAAAATGCCCATTTATGGGTTTTTGGATGAAATTGAAA
1 ATGCAAAATGCCCATTTATGGGTTTTTGGATAAAATTGAAA
100941831 AAATATGTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (45 bp):
ATGCAAAATGCCCATTTATGGGTTTTTGGATAAAATTGAAAGGAT
Found at i:100942226 original size:43 final size:43
Alignment explanation
Indices: 100942173--100942256 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
100942163 TCTGAAGTGT
* ** **
100942173 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATAA
1 GATTACGTGTAAGACCACATCTAGGACAGAGGCATCGATATAA
*
100942216 GATTACGTGTAAGACCACATCTGGGACAGAGGCATCGATAT
1 GATTACGTGTAAGACCACATCTAGGACAGAGGCATCGATAT
100942257 GTGAAAACAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
GATTACGTGTAAGACCACATCTAGGACAGAGGCATCGATATAA
Found at i:100947586 original size:3 final size:3
Alignment explanation
Indices: 100947578--100947606 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
100947568 AAGAATCTCT
100947578 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
100947607 TGTAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:100948211 original size:12 final size:12
Alignment explanation
Indices: 100948192--100948225 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
100948182 AAAAAACAAA
100948192 ACCA-CACCACT
1 ACCACCACCACT
*
100948203 ATCACCACCACT
1 ACCACCACCACT
100948215 ACCACCACCAC
1 ACCACCACCAC
100948226 CACTGCCGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 3 0.15
12 17 0.85
ACGTcount: A:0.35, C:0.56, G:0.00, T:0.09
Consensus pattern (12 bp):
ACCACCACCACT
Found at i:100950209 original size:30 final size:30
Alignment explanation
Indices: 100950173--100950347 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
100950163 ACTTTTCTCA
*
100950173 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100950203 ACTAGCCACACTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100950233 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100950263 ATTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
100950293 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
100950323 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
100950348 CTCGTGCCTA
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
29 3 0.02
30 125 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:100950921 original size:2 final size:2
Alignment explanation
Indices: 100950914--100950988 Score: 54
Period size: 2 Copynumber: 39.5 Consensus size: 2
100950904 CTATATTACG
* * *
100950914 TA TA TA TA TA TA TA T- TT TA TA CTA T- TT TA TG TA TA TA TCA T-
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA T-A TA
*
100950955 TA -A TA T- TA TA T- TA TT TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100950989 TTTTACATGT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
1 6 0.10
2 49 0.83
3 4 0.07
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (2 bp):
TA
Found at i:100950949 original size:25 final size:24
Alignment explanation
Indices: 100950920--100950991 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
100950910 TACGTATATA
100950920 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATA-TATTTTATG
* * *
100950945 TATATATCA-TTAATATTATATTATT
1 TATATAT-ATTTTATA-TATTTTATG
*
100950970 TATATATATATATATATATTTT
1 TATATATAT-TTTATATATTTT
100950992 TACATGTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
24 1 0.03
25 31 0.84
26 5 0.14
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (24 bp):
TATATATATTTTATATATTTTATG
Found at i:100951025 original size:60 final size:60
Alignment explanation
Indices: 100950914--100951028 Score: 148
Period size: 60 Copynumber: 1.9 Consensus size: 60
100950904 CTATATTACG
* *
100950914 TATATATATATATATTTTATACTATTTTATGTATATATCATTAATATTATATTATTTATA
1 TATATATATATATATTTTATACTATCTTATGTATATATCATTAATACTATATTATTTATA
100950974 TATATATATATATATTTT-TACATGTTATCTTATGTATATATC-TT-A-ACTATATTAT
1 TATATATATATATATTTTATAC----TATCTTATGTATATATCATTAATACTATATTAT
100951029 GTATGTATTT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
59 3 0.06
60 27 0.55
61 1 0.02
62 2 0.04
63 16 0.33
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.56
Consensus pattern (60 bp):
TATATATATATATATTTTATACTATCTTATGTATATATCATTAATACTATATTATTTATA
Found at i:100951029 original size:22 final size:24
Alignment explanation
Indices: 100951003--100951061 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
100950993 ACATGTTATC
100951003 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
100951025 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
100951050 TTATGTACATAT
1 TTATGTATATAT
100951062 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:100951051 original size:25 final size:25
Alignment explanation
Indices: 100951019--100951067 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
100951009 ATATATCTTA
**
100951019 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
100951044 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
100951068 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:100951252 original size:24 final size:24
Alignment explanation
Indices: 100951216--100951279 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
100951206 ATATTAATTA
*
100951216 TTAT-TATTCTAATATTTTGATATT
1 TTATATATTTTAATATTTT-ATATT
100951240 TTA-ATATTTTAATATTTTATATT
1 TTATATATTTTAATATTTTATATT
*
100951263 TTATATATTTTATTATT
1 TTATATATTTTAATATT
100951280 CACATCATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 8 0.22
24 28 0.78
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (24 bp):
TTATATATTTTAATATTTTATATT
Found at i:100951263 original size:7 final size:8
Alignment explanation
Indices: 100951220--100951279 Score: 77
Period size: 8 Copynumber: 7.5 Consensus size: 8
100951210 TAATTATTAT
*
100951220 TATTCTAA
1 TATTTTAA
*
100951228 TATTTTGA
1 TATTTTAA
100951236 TATTTTAA
1 TATTTTAA
100951244 TATTTTAA
1 TATTTTAA
100951252 TATTTT-A
1 TATTTTAA
100951259 TATTTTATA
1 TATTTTA-A
*
100951268 TATTTTAT
1 TATTTTAA
100951276 TATT
1 TATT
100951280 CACATCATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 31 0.67
9 8 0.17
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:100958116 original size:73 final size:73
Alignment explanation
Indices: 100957966--100958184 Score: 230
Period size: 73 Copynumber: 3.0 Consensus size: 73
100957956 GATTTTCAAA
* *
100957966 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTGGTTTT-AAT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACACGCTGAGGT-ATTTTCAAT
* * **
100958027 TTATGTTCATAA
64 TTCTATT--TTT
* * ** * *
100958039 AAAATTAGCTTGTATTGCAATAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATTT
100958104 CTATTTTT
66 CTATTTTT
* * *
100958112 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATTT
*
100958177 CTCTTTTT
66 CTATTTTT
100958185 TAATTTCTGT
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
72 2 0.02
73 94 0.78
74 4 0.03
75 20 0.17
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (73 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATTT
CTATTTTT
Found at i:100958403 original size:161 final size:159
Alignment explanation
Indices: 100958019--100958749 Score: 727
Period size: 161 Copynumber: 4.6 Consensus size: 159
100958009 CGCTGAGGTG
* * * ** * * *
100958019 GTTTTAATTTATGTTCATAAAAAATTAGCTTGTATTGCAATAGGTGAGTTGAGCCT-TGGCTCAC
1 GTTTCAATTTAT-TT-ATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---AC
* *
100958083 ACGCTGAGGTATTTTCAATTTCTATTTTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
61 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
* * * *
100958146 CTCGGCTCACATGCTGAGGTCTTTTCAATTTCTCT
126 CTCGGCGCAC-TGCTGAGGTATTGTCAATTTTTCT
* * * *
100958181 TTTTTAATTTCTGTTCGTAAAAGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 GTTTCAA-TT-TATT--T---ATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
100958246 ACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTG
59 ACACGCTGAGGTA-TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTG
* *
100958311 AGCCTCGGGGCAC-GCTGAGGTATTGTCAATTTTTGT
123 AGCCTCGGCGCACTGCTGAGGTATTGTCAATTTTTCT
* * * *
100958347 GTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATG
1 GTTTCAATTTA--TTTATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * * * * * *
100958412 TTGAGGTAATTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCC
64 CTGAGGTATTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
* *
100958476 TCGGCTCACGTGCTGAGGTATTTTCAA--TTTCT
127 TCGGCGCAC-TGCTGAGGTATTGTCAATTTTTCT
* * *
100958508 GTTTC----TATTTGT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCT
1 GTTTCAATTTATTTATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
*
100958568 GAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
66 GAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
* * * *
100958633 GGCAC-GCTGAGGAATTGTCGATTTTTGT
131 CGCACTGCTGAGGTATTGTCAATTTTTCT
* * * * *
100958661 GTTTTAATTTCA--AAAAAATAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACG
1 GTTTCAATTT-ATTTATAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
100958724 CTGAGGTATTTTCAATTTCTGTTTTT
64 CTGAGGTATTTTCAATTTCTGTTTTT
100958750 TTCCAATTTC
Statistics
Matches: 479, Mismatches: 64, Indels: 56
0.80 0.11 0.09
Matches are distributed among these distances:
151 13 0.03
153 49 0.10
154 62 0.13
155 8 0.02
157 4 0.01
158 67 0.14
159 4 0.01
160 9 0.02
161 101 0.21
162 6 0.01
163 18 0.04
164 4 0.01
165 16 0.03
166 42 0.09
167 33 0.07
168 43 0.09
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (159 bp):
GTTTCAATTTATTTATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
CGCACTGCTGAGGTATTGTCAATTTTTCT
Found at i:100958417 original size:87 final size:87
Alignment explanation
Indices: 100958265--100958429 Score: 269
Period size: 87 Copynumber: 1.9 Consensus size: 87
100958255 GGTATTTTTA
* * *
100958265 AATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
100958330 GT-ATTGTCAATTTTTGTGTTTC
66 GTAATTG-CAATTTTTGTGTTTC
* *
100958352 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
100958417 GTAATTGCAATTT
66 GTAATTGCAATTT
100958430 CTATTGTCAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
87 68 0.94
88 4 0.06
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (87 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
GTAATTGCAATTTTTGTGTTTC
Found at i:100958619 original size:73 final size:73
Alignment explanation
Indices: 100958348--100958648 Score: 356
Period size: 73 Copynumber: 4.0 Consensus size: 73
100958338 AATTTTTGTG
* * *
100958348 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
100958413 TGAGGTAA
66 TGAGGTAA
* * * * * *
100958421 TTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCAC
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--GAC
* *
100958485 GTGCTGAGGTAT
62 ATGCTGAGGTAA
* *
100958497 TTTCAATTTCTGTTTCTATTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTCAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG
100958561 ACATGCTGAGGTAA
60 ACATGCTGAGGTAA
* *
100958575 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
100958640 TGAGG-AA
66 TGAGGTAA
100958647 TT
1 TT
100958649 GTCGATTTTT
Statistics
Matches: 191, Mismatches: 25, Indels: 25
0.79 0.10 0.10
Matches are distributed among these distances:
72 10 0.05
73 59 0.31
74 38 0.20
76 21 0.11
78 24 0.13
80 35 0.18
82 2 0.01
83 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
TGAGGTAA
Found at i:100958758 original size:17 final size:17
Alignment explanation
Indices: 100958732--100958766 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
100958722 CGCTGAGGTA
100958732 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
100958748 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
100958766 T
1 T
100958767 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:100958999 original size:75 final size:77
Alignment explanation
Indices: 100958906--100959187 Score: 403
Period size: 77 Copynumber: 3.7 Consensus size: 77
100958896 TAAGTTAAAC
* * * *
100958906 TTTTTAATTTCTGTTTTTC-AAA-AATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
*
100958969 CGTGCTGAGCTA
66 CATGCTGAGCTA
*
100958981 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
100959046 CATGCTGAGCTA
66 CATGCTGAGCTA
* * ** *
100959058 TTTTTAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
* *
100959123 CACGCTGAGGC-G
66 CATGCTGA-GCTA
100959135 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
100959188 TCTCGGGCCA
Statistics
Matches: 188, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
75 47 0.25
76 6 0.03
77 133 0.71
78 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
CATGCTGAGCTA
Found at i:100959200 original size:75 final size:77
Alignment explanation
Indices: 100958906--100959227 Score: 379
Period size: 77 Copynumber: 4.2 Consensus size: 77
100958896 TAAGTTAAAC
* * * * *
100958906 TTTTTAATTTCTGTTTTTC-AAA-AATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
**
100958969 CGTGCTGAGCTA
66 CACGCTGAGCTA
* *
100958981 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
*
100959046 CATGCTGAGCTA
66 CACGCTGAGCTA
* * *
100959058 TTTTTAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-TC
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
*
100959122 ACACGCTGAGGC-G
65 ACACGCTGA-GCTA
* *
100959135 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGC-C
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
* * *
100959197 ACACACTGAGGTC
65 ACACGCTGAGCTA
* *
100959210 TTTTCAAATTCTGTTTTT
1 TTTTCAATTTCTGCTTTT
100959228 AATTTCTAAT
Statistics
Matches: 219, Mismatches: 22, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
74 1 0.00
75 77 0.35
76 6 0.03
77 132 0.60
78 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:100960055 original size:30 final size:30
Alignment explanation
Indices: 100960019--100960193 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
100960009 ACTTTTCTCA
*
100960019 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100960049 ACTAGCCACACTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100960079 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
100960109 ATTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
100960139 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
100960169 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
100960194 CTTGTGCCTA
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
29 3 0.02
30 125 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:100960763 original size:2 final size:2
Alignment explanation
Indices: 100960756--100960829 Score: 54
Period size: 2 Copynumber: 39.5 Consensus size: 2
100960746 CTATATTACG
* * *
100960756 TA TA TA TA TA TA TA T- TT TA TA CTA T- TT TA TG TA TA TA TCA T-
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA T-A TA
100960797 TA -A TA T- TA TA T- TA T- TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100960830 TTTTTTTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
1 7 0.12
2 48 0.81
3 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (2 bp):
TA
Found at i:100960877 original size:22 final size:24
Alignment explanation
Indices: 100960849--100960907 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
100960839 ACATGTTATC
100960849 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
100960871 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
100960896 TTATGTACATAT
1 TTATGTATATAT
100960908 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:100960897 original size:25 final size:25
Alignment explanation
Indices: 100960865--100960913 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
100960855 ATATATCTTA
**
100960865 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
100960890 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
100960914 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:100961098 original size:24 final size:24
Alignment explanation
Indices: 100961062--100961125 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
100961052 ATATTAATTA
*
100961062 TTAT-TATTCTAATATTTTGATATT
1 TTATATATTTTAATATTTT-ATATT
100961086 TTA-ATATTTTAATATTTTATATT
1 TTATATATTTTAATATTTTATATT
*
100961109 TTATATATTTTATTATT
1 TTATATATTTTAATATT
100961126 CACATCATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 8 0.22
24 28 0.78
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (24 bp):
TTATATATTTTAATATTTTATATT
Found at i:100961109 original size:7 final size:8
Alignment explanation
Indices: 100961066--100961125 Score: 77
Period size: 8 Copynumber: 7.5 Consensus size: 8
100961056 TAATTATTAT
*
100961066 TATTCTAA
1 TATTTTAA
*
100961074 TATTTTGA
1 TATTTTAA
100961082 TATTTTAA
1 TATTTTAA
100961090 TATTTTAA
1 TATTTTAA
100961098 TATTTT-A
1 TATTTTAA
100961105 TATTTTATA
1 TATTTTA-A
*
100961114 TATTTTAT
1 TATTTTAA
100961122 TATT
1 TATT
100961126 CACATCATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 31 0.67
9 8 0.17
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:100971499 original size:11 final size:11
Alignment explanation
Indices: 100971467--100971499 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
100971457 TTGTCATGTT
100971467 AATGAAGAGAA
1 AATGAAGAGAA
100971478 AAT-AAGAGAA
1 AATGAAGAGAA
*
100971488 AATGATGAGAA
1 AATGAAGAGAA
100971499 A
1 A
100971500 TAGTGTAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:100972965 original size:46 final size:46
Alignment explanation
Indices: 100972915--100973096 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
100972905 ACTCTCTAAT
* * * *
100972915 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
100972961 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
100973007 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
100973053 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
100973097 TCAAAGATAA
Statistics
Matches: 120, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 119 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:100973397 original size:16 final size:17
Alignment explanation
Indices: 100973376--100973408 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
100973366 ATGATGGAGC
100973376 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
100973392 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
100973409 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:100976164 original size:31 final size:31
Alignment explanation
Indices: 100976124--100976194 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
100976114 AAATGGTAAC
*
100976124 TACTATGTATCGATGTTTATGTTATAGCAGG
1 TACTATGTATCGATGTTTATATTATAGCAGG
* * * *
100976155 TACTTTGTATCGGTGTTTATATTGTATCAGG
1 TACTATGTATCGATGTTTATATTATAGCAGG
100976186 TACTATGTA
1 TACTATGTA
100976195 CCTATGTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (31 bp):
TACTATGTATCGATGTTTATATTATAGCAGG
Found at i:100983404 original size:20 final size:18
Alignment explanation
Indices: 100983357--100983408 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
100983347 AAAAACCCCT
100983357 TTCTCTTCTCTTCTTTTCTC
1 TTCTCTT-TC-TCTTTTCTC
*
100983377 TTCCCTTTCTCTTTTCTC
1 TTCTCTTTCTCTTTTCTC
100983395 TCCTCTCTTTCTCT
1 T--TCTCTTTCTCT
100983409 CTCTGTATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 10 0.36
19 2 0.07
20 16 0.57
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
TTCTCTTTCTCTTTTCTC
Found at i:100995712 original size:25 final size:26
Alignment explanation
Indices: 100995665--100995713 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
100995655 ACTTTCTTTA
** *
100995665 TATATATTTTTAAAATTTTAAATTCT
1 TATATATTTTTAAAAAATAAAATTCT
100995691 TATA-ATTTTTAAAAAATAAAATT
1 TATATATTTTTAAAAAATAAAATT
100995714 TGGAATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TATATATTTTTAAAAAATAAAATTCT
Found at i:100995743 original size:32 final size:32
Alignment explanation
Indices: 100995672--100995743 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
100995662 TTATATATAT
*
100995672 TTTTAAAATTTTAAATTCTTATAATTTTTAAA
1 TTTTAAAATTTGAAATTCTTATAATTTTTAAA
*** * *
100995704 AAATAAAATTTGGAATT-TTAATATTTTTTAAA
1 TTTTAAAATTTGAAATTCTT-ATAATTTTTAAA
100995736 TTTTAAAA
1 TTTTAAAA
100995744 AGTATTTTGA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
31 2 0.07
32 28 0.93
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (32 bp):
TTTTAAAATTTGAAATTCTTATAATTTTTAAA
Found at i:100995756 original size:19 final size:19
Alignment explanation
Indices: 100995729--100995776 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
100995719 TTTTAATATT
*
100995729 TTTTAAATTTTAAAAAGTA
1 TTTTGAATTTTAAAAAGTA
* *
100995748 TTTTGAATTTTTAATAATTA
1 TTTTGAA-TTTTAAAAAGTA
100995768 TTTTGAATT
1 TTTTGAATT
100995777 ATTTTGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTGAATTTTAAAAAGTA
Found at i:100995759 original size:20 final size:20
Alignment explanation
Indices: 100995736--100995776 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
100995726 ATTTTTTAAA
100995736 TTTTAAAAAGTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
* *
100995756 TTTTAATAATTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
100995776 T
1 T
100995777 ATTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTAAAAAGTATTTTGAAT
Found at i:100996241 original size:3 final size:3
Alignment explanation
Indices: 100996233--100996273 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
100996223 AATAATCTTT
100996233 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
100996274 TTAAAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:100999891 original size:3 final size:3
Alignment explanation
Indices: 100999885--100999928 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
100999875 AATAATAATA
*
100999885 TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
100999929 GAAATAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:101003496 original size:22 final size:22
Alignment explanation
Indices: 101003471--101003514 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
101003461 TAGTCATATA
101003471 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
101003493 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
101003515 TATTTAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:101003540 original size:19 final size:17
Alignment explanation
Indices: 101003468--101003552 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 17
101003458 ATTTAGTCAT
*
101003468 ATAATAAATTATTAATATA
1 ATAATAAATT-TT-ATTTA
101003487 ATAAATATAATTTATTATTT-
1 AT-AATA-AA-TT-TTATTTA
101003507 -TAATAAA--TTATTTA
1 ATAATAAATTTTATTTA
*
101003521 ATACTTAAATTTTATCTTA
1 ATA-ATAAATTTTAT-TTA
101003540 ATAATAAATTTTA
1 ATAATAAATTTTA
101003553 AAAATAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
13 6 0.11
15 2 0.04
16 4 0.07
17 2 0.04
18 17 0.31
19 9 0.17
20 4 0.07
21 5 0.09
22 5 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATAAATTTTATTTA
Found at i:101003560 original size:16 final size:16
Alignment explanation
Indices: 101003538--101003574 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
101003528 AATTTTATCT
101003538 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
101003555 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
101003570 TAATA
1 TAATA
101003575 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:101003627 original size:15 final size:15
Alignment explanation
Indices: 101003607--101003663 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
101003597 ATTCAATATT
101003607 AATATTTTAATAATA
1 AATATTTTAATAATA
*
101003622 AATATTTATTACAAATATA
1 AATA-TT-TTA-ATA-ATA
*
101003641 AATATATTAATAATA
1 AATATTTTAATAATA
101003656 AATATTTT
1 AATATTTT
101003664 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 14 0.41
16 4 0.12
17 6 0.18
18 3 0.09
19 7 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:101003638 original size:17 final size:17
Alignment explanation
Indices: 101003613--101003662 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
101003603 TATTAATATT
101003613 TTAATAATAAATATTTA
1 TTAATAATAAATATTTA
*
101003630 TTACA-AATATAA-ATATA
1 TTA-ATAATA-AATATTTA
101003647 TTAATAATAAATATTT
1 TTAATAATAAATATTT
101003663 TGTAGTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATAATAAATATTTA
Found at i:101012140 original size:31 final size:31
Alignment explanation
Indices: 101012091--101012163 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
101012081 TAATTTATTT
* * *
101012091 AGTACTCGCATCCCTTGGGTACGATCCTCAA
1 AGTACTCACCTCCATTGGGTACGATCCTCAA
*
101012122 AGTACTCACCTCCATTGGGTACGATCCTTAA
1 AGTACTCACCTCCATTGGGTACGATCCTCAA
* *
101012153 AGCACTTACCT
1 AGTACTCACCT
101012164 ACTTTATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (31 bp):
AGTACTCACCTCCATTGGGTACGATCCTCAA
Found at i:101018972 original size:47 final size:47
Alignment explanation
Indices: 101018903--101018998 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
101018893 AATTCTGATG
101018903 ATTATATGTGCTTTCCCGAAATGGATGAGGTCCTGCATTTGTTTCTA
1 ATTATATGTGCTTTCCCGAAATGGATGAGGTCCTGCATTTGTTTCTA
*
101018950 ATTATATGTGCTTTCCCGAAATGGATGAGGTCTTGCATTTGTTTCTA
1 ATTATATGTGCTTTCCCGAAATGGATGAGGTCCTGCATTTGTTTCTA
101018997 AT
1 AT
101018999 GGATTTTGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.42
Consensus pattern (47 bp):
ATTATATGTGCTTTCCCGAAATGGATGAGGTCCTGCATTTGTTTCTA
Found at i:101021117 original size:12 final size:12
Alignment explanation
Indices: 101021102--101021132 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
101021092 TTCTCTTTTA
101021102 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
101021114 TTTTTCTTTCTC
1 TTTTTCTTTCCC
101021126 TTTTTCT
1 TTTTTCT
101021133 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:101021233 original size:16 final size:16
Alignment explanation
Indices: 101021212--101021242 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101021202 TTTATTATTT
101021212 TATTAACATAATATAA
1 TATTAACATAATATAA
*
101021228 TATTAATATAATATA
1 TATTAACATAATATA
101021243 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:101033620 original size:19 final size:20
Alignment explanation
Indices: 101033585--101033630 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
101033575 CAGAAAATGA
*
101033585 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATAATTTACT
101033605 TTTCTGG-AAATAATTTACT
1 TTTCTGGAAAATAATTTACT
101033624 TTTCTGG
1 TTTCTGG
101033631 TGTTTTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:101035085 original size:32 final size:32
Alignment explanation
Indices: 101035039--101035099 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
101035029 TGTCAATCAT
101035039 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
101035071 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
101035100 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:101035106 original size:27 final size:30
Alignment explanation
Indices: 101035039--101035112 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
101035029 TGTCAATCAT
*
101035039 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
*
101035071 TTCAATATCTAACAAGCTTGAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
101035099 -TCAATATCTAACAA
1 TTCAATATCTAACAA
101035113 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:101035123 original size:27 final size:27
Alignment explanation
Indices: 101035072--101035126 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
101035062 CATAATAAAT
* *
101035072 TCAATATCTAACAAGCTTGAAACATAA
1 TCAATATCTAACAAGATTCAAACATAA
101035099 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATTCAA-ACATAA
101035126 T
1 T
101035127 AATTTCAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTCAAACATAA
Found at i:101040341 original size:55 final size:53
Alignment explanation
Indices: 101040282--101040387 Score: 149
Period size: 55 Copynumber: 2.0 Consensus size: 53
101040272 GGGAAGAGAT
* *
101040282 TTGAAGAACGGAAGAAGAAGAAGACTTACCTGGATGAAGAATGAGATGGAAAAAG
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCT-GATGAAG-AGGAGATGGAAAAAG
* * *
101040337 TTGAAGAATGGAAGAAAAAGATGGCTTACCTGATGAAGAGGAGATGGAAAA
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAA
101040388 TGTCTTACAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 12 0.26
54 7 0.15
55 27 0.59
ACGTcount: A:0.46, C:0.07, G:0.31, T:0.16
Consensus pattern (53 bp):
TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAAAG
Found at i:101040355 original size:20 final size:22
Alignment explanation
Indices: 101040316--101040356 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
101040306 CTTACCTGGA
*
101040316 TGAAGAATGAGATGGAAAAAGT
1 TGAAGAATGAGATAGAAAAAGT
101040338 TGAAGAATG-GA-AGAAAAAG
1 TGAAGAATGAGATAGAAAAAG
101040357 ATGGCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.15
Consensus pattern (22 bp):
TGAAGAATGAGATAGAAAAAGT
Found at i:101046654 original size:46 final size:46
Alignment explanation
Indices: 101046601--101046767 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
101046591 TTGAGCATCT
*
101046601 GAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
101046647 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
*
101046694 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
101046739 CAAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCAC
101046768 GTAGGGGCGG
Statistics
Matches: 102, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.07
46 50 0.49
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:101046754 original size:93 final size:93
Alignment explanation
Indices: 101046595--101046765 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
101046585 GGATGGTTGA
* * *
101046595 GCATCTGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCCAACTCGTTGAGT
101046660 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
101046688 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCCAA-CTCGTTGAG
101046752 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
101046766 ACGTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101054242 original size:46 final size:46
Alignment explanation
Indices: 101054192--101054364 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
101054182 TGGTTGAGCA
101054192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
101054238 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
101054283 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
101054331 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101054365 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101054348 original size:93 final size:93
Alignment explanation
Indices: 101054189--101054359 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101054179 GGATGGTTGA
* *
101054189 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101054254 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
101054282 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101054347 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
101054360 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:101056278 original size:13 final size:13
Alignment explanation
Indices: 101056260--101056286 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101056250 CTCTCCTTTG
101056260 TCTTTTCTTTTTT
1 TCTTTTCTTTTTT
101056273 TCTTTTCTTTTTT
1 TCTTTTCTTTTTT
101056286 T
1 T
101056287 TTTGAAGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TCTTTTCTTTTTT
Found at i:101056283 original size:18 final size:18
Alignment explanation
Indices: 101056255--101056289 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
101056245 TTGGCCTCTC
101056255 CTTTGTCTTTTCTTTTTTT
1 CTTTGTCTTTT-TTTTTTT
101056274 CTTT-TCTTTTTTTTTT
1 CTTTGTCTTTTTTTTTT
101056290 GAAGGTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
CTTTGTCTTTTTTTTTTT
Found at i:101056882 original size:6 final size:6
Alignment explanation
Indices: 101056873--101056913 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
101056863 TTTTTTTTTT
*
101056873 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC CTTGCC TTTGC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGC
101056914 AATATAGTGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.34, G:0.17, T:0.49
Consensus pattern (6 bp):
TTTGCC
Found at i:101060535 original size:46 final size:45
Alignment explanation
Indices: 101060485--101060656 Score: 179
Period size: 45 Copynumber: 3.8 Consensus size: 45
101060475 TGGTTGAGCA
101060485 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* * *
101060531 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
* * *
101060576 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGGTGCAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * * *
101060623 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101060657 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 34 0.32
46 29 0.27
47 29 0.27
48 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:101065654 original size:60 final size:60
Alignment explanation
Indices: 101065566--101065702 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
101065556 CAGAGTTAAC
* *
101065566 TGGGCCTTAGCCCATATCAATATTAATCTGCGCCATAGCCC-CTTAC-AGT-ATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTACAAGTCA--AGA-TATAT
* * *
101065627 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCAAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTACAAGTCAAGATATAT
*
101065687 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
101065703 TAACACAATA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
60 50 0.75
61 13 0.19
62 3 0.04
63 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTACAAGTCAAGATATAT
Found at i:101065666 original size:28 final size:27
Alignment explanation
Indices: 101065565--101065666 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
101065555 TCAGAGTTAA
* *
101065565 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
* *
101065593 CTGCGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
101065625 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
101065653 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
101065667 TATTACAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
27 7 0.12
28 26 0.46
30 2 0.04
32 16 0.28
33 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:101067802 original size:12 final size:13
Alignment explanation
Indices: 101067780--101067808 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
101067770 TAAACTAAAC
101067780 ATAAGAAATAATA
1 ATAAGAAATAATA
101067793 ATAA-AAATAATA
1 ATAAGAAATAATA
101067805 ATAA
1 ATAA
101067809 TGATAACATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAAGAAATAATA
Found at i:101070892 original size:41 final size:41
Alignment explanation
Indices: 101070806--101070991 Score: 162
Period size: 41 Copynumber: 4.5 Consensus size: 41
101070796 TATATATATA
* * ** * *
101070806 TATATATGGCACTTAGTGTGCTATTTGGA-ATAGATTCGAC
1 TATATATAGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
*
101070846 TATATATAGAACTTAGTGTGCGAGATCGAGATAGCTTCGAC
1 TATATATAGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* * * *
101070887 TATATATGGCACTTACTGTGCAAGATCGAGATAG-TTGCGGC
1 TATATATAGCACTTAGTGTGCGAGATCGAGATAGCTT-CGAC
* ** * *
101070928 TATGTA-AGGCACTTAGTGTGCGAGATTAAAATAGCTTCAAC
1 TATATATA-GCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* *
101070969 TATGTATTGGCACTTAGTGTGCG
1 TATATA-TAGCACTTAGTGTGCG
101070992 TGATATCGAG
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
40 25 0.21
41 77 0.65
42 16 0.14
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (41 bp):
TATATATAGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
Done.