Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 352 of 444
Found at i:102042721 original size:27 final size:27
Alignment explanation
Indices: 102042659--102042723 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
102042649 GGGCATATTC
102042659 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
102042686 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
102042713 GTCTTTTTACC
1 GTCATTTTACC
102042724 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:102042807 original size:27 final size:26
Alignment explanation
Indices: 102042777--102042832 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
102042767 GTAAATCAAC
*
102042777 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
102042804 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
102042830 AAA
1 AAA
102042833 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:102042924 original size:27 final size:27
Alignment explanation
Indices: 102042785--102043372 Score: 222
Period size: 27 Copynumber: 21.8 Consensus size: 27
102042775 ACAAACCAAA
* * * * *
102042785 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
102042812 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * *
102042841 GGTATTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
102042868 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
102042895 GGTATTTTGGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
102042922 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
102042949 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
102042976 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
102043003 GGTAAAACGGTAATTCTGTAAGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
102043030 GGTAAAACGATAATTATGTAAATC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
102043056 GGTAAAACGGTAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
***
102043083 GGTAAAACGGTAATTTTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
102043110 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
102043137 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
102043164 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
102043191 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
102043218 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * * *
102043245 GGTATTTTGATAATTTTACAAA-CTAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * *
102043271 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
102043298 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
102043325 GGTATTTTAGTAATTTTACAAAGC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
** *
102043351 GGTATTTTAGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
102043373 CCAAAGTATT
Statistics
Matches: 481, Mismatches: 67, Indels: 27
0.84 0.12 0.05
Matches are distributed among these distances:
26 77 0.16
27 373 0.78
28 17 0.04
29 14 0.03
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:102042935 original size:54 final size:54
Alignment explanation
Indices: 102042876--102043167 Score: 300
Period size: 54 Copynumber: 5.4 Consensus size: 54
102042866 GGGGTATTTT
* * **** * *
102042876 GGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
102042930 AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
102042984 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * *
102043038 GATAATTATGTAAATC-AGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAAC
****
102043091 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* *
102043145 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
102043168 TTTCAATAAT
Statistics
Matches: 200, Mismatches: 35, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
52 1 0.00
53 45 0.22
54 153 0.76
55 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.30
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:102043149 original size:134 final size:135
Alignment explanation
Indices: 102042905--102043167 Score: 384
Period size: 134 Copynumber: 2.0 Consensus size: 135
102042895 GGTATTTTGG
* *
102042905 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
* **
102042970 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAA
66 ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAA
102043035 AACGA
131 AACGA
* * * * *
102043040 TAATTATGTAAATC-AGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTTTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
**** *
102043104 ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
66 ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTA
102043168 TTTCAATAAT
Statistics
Matches: 113, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
134 100 0.88
135 13 0.12
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (135 bp):
TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAA
AACGA
Found at i:102043151 original size:107 final size:108
Alignment explanation
Indices: 102042903--102043140 Score: 336
Period size: 107 Copynumber: 2.2 Consensus size: 108
102042893 AGGGTATTTT
* * * * *
102042903 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACAGTAATTATAT
* *
102042968 AAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
66 AAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
102043011 GGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATC-AGGGTAAAACGGTAATTATGT
1 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACAGTAATTATAT
*
102043075 AAATTAG-GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAAC
66 AAA-TAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
102043118 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTCTATAAATCGAGGGTA
102043141 CTTTGGTAAT
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
107 76 0.66
108 40 0.34
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (108 bp):
GGTAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACAGTAATTATAT
AAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:102043293 original size:53 final size:53
Alignment explanation
Indices: 102043201--102043367 Score: 223
Period size: 53 Copynumber: 3.1 Consensus size: 53
102043191 GGTATTTCAG
* *
102043201 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
1 TAATTTTACAAACTA-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
*
102043255 TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
* * *
102043308 TAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTT-A
1 TAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGA
102043360 GTAATTTT
1 -TAATTTT
102043368 GTAAACCAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
53 64 0.62
54 38 0.37
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (53 bp):
TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
Found at i:102043307 original size:80 final size:78
Alignment explanation
Indices: 102043136--102043367 Score: 268
Period size: 80 Copynumber: 2.9 Consensus size: 78
102043126 TATAAATCGA
* * * * ** *
102043136 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACA-AAC-AGGGTATTTTA
* *
102043200 GTAATTTCACAAATTAG
62 GTAATTTTACAAACTAG
*
102043217 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAAC-AGGGTATTTTAGT
102043282 AATTTTACAAACTAG
64 AATTTTACAAACTAG
* * *
102043297 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTAGT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA-CAGGGTATTTTAGT
102043362 AATTTT
64 AATTTT
102043368 GTAAACCAAA
Statistics
Matches: 132, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 88 0.67
81 39 0.30
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (78 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACAGGGTATTTTAGTAA
TTTTACAAACTAG
Found at i:102043374 original size:53 final size:53
Alignment explanation
Indices: 102043217--102043385 Score: 220
Period size: 53 Copynumber: 3.2 Consensus size: 53
102043207 CACAAATTAG
* * *
102043217 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTG-TAATTTTATAAACCAA
*
102043270 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT-GTAATTTTATAAACCAA
*
102043324 GGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTT-GTAATTTTATAAACCAA
*
102043377 -AGTATTTTA
1 GGGTATTTTA
102043386 AACATGGATA
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
52 8 0.07
53 72 0.67
54 26 0.24
55 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGTAATTTTATAAACCAA
Found at i:102046144 original size:30 final size:31
Alignment explanation
Indices: 102046081--102046150 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
102046071 GGCCGTAGCT
*
102046081 GAAGCCTTTTCATATTTCATATTACTGGGCC
1 GAAGCCTTTTCAGATTTCATATTACTGGGCC
102046112 GAAGCCTTTTCAGATTTCATATTACT-GGCC
1 GAAGCCTTTTCAGATTTCATATTACTGGGCC
102046142 GAAGCCTTT
1 GAAGCCTTT
102046151 ACTGTAAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 13 0.34
31 25 0.66
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (31 bp):
GAAGCCTTTTCAGATTTCATATTACTGGGCC
Found at i:102046393 original size:24 final size:24
Alignment explanation
Indices: 102046342--102046484 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
102046332 GCTTTATCAT
*
102046342 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
102046367 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
102046391 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
102046414 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102046438 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102046462 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102046485 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102046421 original size:47 final size:48
Alignment explanation
Indices: 102046342--102046479 Score: 199
Period size: 47 Copynumber: 2.9 Consensus size: 48
102046332 GCTTTATCAT
* *
102046342 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
102046391 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
102046438 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
102046480 TTTTTTCACT
Statistics
Matches: 83, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
47 44 0.53
48 27 0.33
49 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:102046442 original size:71 final size:72
Alignment explanation
Indices: 102046341--102046484 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
102046331 TGCTTTATCA
*
102046341 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
102046406 GCCCTTT
66 GCCCTTT
* * **
102046413 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
*
102046476 AGCCTTTT
65 AGCCCTTT
102046484 T
1 T
102046485 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:102046560 original size:20 final size:20
Alignment explanation
Indices: 102046535--102046594 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
102046525 TATGATTACC
102046535 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
** *
102046555 TCATGTGCATGGCATACATT
1 TCATGTGCATATCATACATA
102046575 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
102046595 CCATATTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:102046669 original size:25 final size:25
Alignment explanation
Indices: 102046637--102046684 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102046627 ATACATAAAC
* * *
102046637 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
102046662 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
102046685 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:102047902 original size:27 final size:27
Alignment explanation
Indices: 102047840--102047904 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
102047830 GGGCATATTC
102047840 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
102047867 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
102047894 GTCTTTTTACC
1 GTCATTTTACC
102047905 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:102047988 original size:27 final size:27
Alignment explanation
Indices: 102047966--102048159 Score: 131
Period size: 27 Copynumber: 7.1 Consensus size: 27
102047956 ACAAACCAAA
* *
102047966 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
102047993 GGTACTTCTA-TAATTTT-TAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGT-AAA-TCAAG
* * *
102048021 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
102048048 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
* *
102048075 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
102048102 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** * * *
102048129 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
102048156 GGTA
1 GGTA
102048160 AAACGGTAAT
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 113 0.84
28 20 0.15
29 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:102048105 original size:54 final size:54
Alignment explanation
Indices: 102048019--102048554 Score: 197
Period size: 54 Copynumber: 9.9 Consensus size: 54
102048009 TTAAAAGTCA
* * * * *
102048019 AGGGTATTTCTGTAACTTTGTAAATC-AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCGA-GGGTATTTCGGTAATTTTATAAATTG
* *** * * * **
102048073 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAATTG
*** * * *** * *
102048127 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAATTG
*** * * * *** * * * *
102048181 AGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAA-TC
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAATTG
*** * * * *** * *
102048234 AGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCG
1 A-GGGTATTTCGGTAATTTTATAAATCGA-GGGTATTTCGGTAATTTTATAAATTG
*** * * * *
102048289 AGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTA-TTTCGGTAATTTTATAAATTG
** * ** * * *
102048343 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATT-
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAATTG
* * * * * * * *
102048396 AGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGATAATTTTACAAACTA
1 A-GGGTATTTCGGTAATTTTATAAATCGA-GGGTATTTCGGTAATTTTATAAATTG
* * * * ***
102048451 AGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTCGGTAATTTTATAAATCGA-GGGTATTTCGGTAATTTTATAAATTG
** * * * *
102048505 AGGGTATTTTAGTAATTTTACAAAGC-AGGGTATTTTGGTAATTTTGTAAA
1 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAA
102048555 CCAAAGTATT
Statistics
Matches: 398, Mismatches: 73, Indels: 23
0.81 0.15 0.05
Matches are distributed among these distances:
53 31 0.08
54 362 0.91
55 5 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTATAAATTG
Found at i:102048160 original size:27 final size:27
Alignment explanation
Indices: 102048082--102048321 Score: 331
Period size: 27 Copynumber: 8.9 Consensus size: 27
102048072 GAGGGTATTT
*
102048082 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
102048109 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
102048136 CAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
102048163 CGGTAATTCTGTAAATTGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
102048190 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
102048217 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* *
102048244 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
*
102048271 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
102048298 CGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTCTGTAAATCGAGGGTA
102048322 CTTTGGTAAT
Statistics
Matches: 193, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 191 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:102048343 original size:27 final size:26
Alignment explanation
Indices: 102048311--102048549 Score: 194
Period size: 27 Copynumber: 8.9 Consensus size: 26
102048301 TAATTCTATA
*
102048311 AATCGAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
***
102048337 AAGTCGAGGGTATTTCAATAATTTTAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
* ** *
102048364 AGGTCGAGGGTATTTCAGTAATTTCAC
1 A-ATCGAGGGTATTTTGGTAATTTTAC
*
102048391 AAAT-TAGGGGTATTTTGGTAATTTTAC
1 -AATCGA-GGGTATTTTGGTAATTTTAC
* * *
102048418 AAACTAGGGGTATTTTGATAATTTTAC
1 AATCGA-GGGTATTTTGGTAATTTTAC
* *
102048445 AAACTAAGGGTATTTTGGTAATTTTAC
1 AATC-GAGGGTATTTTGGTAATTTTAC
* * *
102048472 AAACTAGGGGTATTTTGGTAATTTTATA
1 AATCGA-GGGTATTTTGGTAATTTTA-C
* * *
102048500 AACCAAGGGTATTTTAGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
*
102048526 AA-AGCAGGGTATTTTGGTAATTTT
1 AATCG-AGGGTATTTTGGTAATTTT
102048550 GTAAACCAAA
Statistics
Matches: 179, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
26 26 0.15
27 147 0.82
28 6 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:102048455 original size:81 final size:81
Alignment explanation
Indices: 102048317--102048528 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
102048307 TATAAATCGA
* * * * ** *
102048317 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTCAAGGGTATTTC
*
102048380 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
102048398 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-AAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTCAAGGGTATTTCA
*
102048462 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
102048479 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
102048529 GCAGGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 106 0.94
82 6 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTCAAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:102057529 original size:21 final size:20
Alignment explanation
Indices: 102057491--102057530 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
102057481 TACATGTGTG
102057491 TTTTGATGATTTATGATAGA
1 TTTTGATGATTTATGATAGA
102057511 TTTTGAATG-TTTGATGATAG
1 TTTTG-ATGATTT-ATGATAG
102057531 TTATACAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (20 bp):
TTTTGATGATTTATGATAGA
Found at i:102062121 original size:30 final size:30
Alignment explanation
Indices: 102062086--102062148 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
102062076 AAAAAATAAA
102062086 ATATTTAAAAATACATAATTTTTAACTAAC
1 ATATTTAAAAATACATAATTTTTAACTAAC
*
102062116 ATATTTGAAAATACATAATTTTTAACTAAC
1 ATATTTAAAAATACATAATTTTTAACTAAC
102062146 ATA
1 ATA
102062149 CACCCTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.40
Consensus pattern (30 bp):
ATATTTAAAAATACATAATTTTTAACTAAC
Found at i:102068729 original size:3 final size:3
Alignment explanation
Indices: 102068723--102068775 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
102068713 ATGATTGTTT
*
102068723 ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
102068771 ATC AT
1 ATC AT
102068776 ATATTTTTGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.30, G:0.00, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:102081623 original size:34 final size:34
Alignment explanation
Indices: 102081580--102081691 Score: 188
Period size: 34 Copynumber: 3.3 Consensus size: 34
102081570 TGACTGCTAC
102081580 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
*
102081614 TGATACTGTGATGGGCTAAGGCCCTAATGCATAC
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
* *
102081648 TGATATTGTGATGGGCTAAGGCCCTACTGCATATT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATA-T
102081683 TGATACTGT
1 TGATACTGT
102081692 ACTAAGATGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
34 64 0.89
35 8 0.11
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (34 bp):
TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
Found at i:102081654 original size:40 final size:40
Alignment explanation
Indices: 102081566--102081711 Score: 129
Period size: 34 Copynumber: 3.9 Consensus size: 40
102081556 TACTGAATAT
*
102081566 TGCATGACTGCTACTGATACTGTGATGGGCTAAGGCCCTAA
1 TGCAT-ACTGATACTGATACTGTGATGGGCTAAGGCCCTAA
102081607 TGC--A-T-AT--TGATACTGTGATGGGCTAAGGCCCTAA
1 TGCATACTGATACTGATACTGTGATGGGCTAAGGCCCTAA
*
102081641 TGCATACTG--A-T-AT--TGTGATGGGCTAAGGCCCTAC
1 TGCATACTGATACTGATACTGTGATGGGCTAAGGCCCTAA
* ** *
102081675 TGCATATTTGATACTG-TACTAAGATGGGCAAAGGCCC
1 TGCATA-CTGATACTGATACTGTGATGGGCTAAGGCCC
102081712 AAACCGTTAC
Statistics
Matches: 87, Mismatches: 6, Indels: 25
0.74 0.05 0.21
Matches are distributed among these distances:
34 56 0.64
35 2 0.02
36 4 0.05
37 4 0.05
38 3 0.03
40 15 0.17
41 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TGCATACTGATACTGATACTGTGATGGGCTAAGGCCCTAA
Found at i:102092666 original size:46 final size:46
Alignment explanation
Indices: 102092606--102092777 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
102092596 TGGTTGAGCA
* * *
102092606 TCCGAACACATTGAGTTGAGTCAGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
102092652 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
102092697 CATCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
102092744 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
102092778 AGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 9 0.09
46 71 0.69
47 11 0.11
49 4 0.04
50 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:102093679 original size:20 final size:20
Alignment explanation
Indices: 102093642--102093684 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
102093632 CTGTTCTAAC
* *
102093642 TTTAAAAATTCATAATAAAT
1 TTTAAAAAATAATAATAAAT
* *
102093662 TTTAAAAAATAATTATAAGT
1 TTTAAAAAATAATAATAAAT
102093682 TTT
1 TTT
102093685 TCTTTATATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTAAAAAATAATAATAAAT
Found at i:102096011 original size:52 final size:52
Alignment explanation
Indices: 102095949--102096090 Score: 156
Period size: 52 Copynumber: 2.9 Consensus size: 52
102095939 AAACCCAATT
* * *
102095949 ACATGTATCGCGTCCATAATGAACTTGGACCAACTCAATGAGCTCGGATGTC
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* * *
102096001 ACATGTATCGCATCCATTATGAACTCGGATCAACTCAACGAGCTTGGATG--
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* *
102096051 -C-TG----GCATCCATAATGAACTCAGACCAACTTAACGAGCTCG
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCG
102096091 AATGCCTCAT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
44 32 0.41
48 2 0.03
49 1 0.01
52 44 0.56
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (52 bp):
ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
Found at i:102098895 original size:15 final size:15
Alignment explanation
Indices: 102098870--102098923 Score: 72
Period size: 15 Copynumber: 3.6 Consensus size: 15
102098860 GAGATGACAT
*
102098870 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
102098885 GAAGTCCAAGAGAAA
1 GAAATCCAAGATAAA
*
102098900 GAAATCCAAGATACA
1 GAAATCCAAGATAAA
102098915 GAAATCCAA
1 GAAATCCAA
102098924 AATACAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:102098928 original size:15 final size:15
Alignment explanation
Indices: 102098899--102098929 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
102098889 TCCAAGAGAA
*
102098899 AGAAATCCAAGATAC
1 AGAAATCCAAAATAC
102098914 AGAAATCCAAAATAC
1 AGAAATCCAAAATAC
102098929 A
1 A
102098930 ATATCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.19, G:0.10, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAAATAC
Found at i:102102849 original size:52 final size:52
Alignment explanation
Indices: 102102763--102102864 Score: 143
Period size: 52 Copynumber: 2.0 Consensus size: 52
102102753 AAACCCAATT
* *
102102763 ACATGTATCGCATCCATAATGAACTCGAACCAACTTAATGAGCTCAGATGTC
1 ACATGTATCGCATCCATAATGAACTCGAACCAACTCAACGAGCTCAGATGTC
* * *
102102815 ACATGTATCGCATCCATTATGAACTC-AGATCAACTCAACGAGCTCGGATG
1 ACATGTATCGCATCCATAATGAACTCGA-ACCAACTCAACGAGCTCAGATG
102102865 CTCGCATCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 1 0.02
52 43 0.98
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (52 bp):
ACATGTATCGCATCCATAATGAACTCGAACCAACTCAACGAGCTCAGATGTC
Found at i:102102887 original size:44 final size:44
Alignment explanation
Indices: 102102822--102102945 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 44
102102812 GTCACATGTA
* * *
102102822 TCGCATCCATTATGAACTCAGATCAACTCAACGAGCTCGGATGC
1 TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
* *
102102866 TCGCATCTATTATGAAATCAGACCAACTCAATGAGCTCGAATGC
1 TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
* * * * *
102102910 -CTCATACATATCACGAAACCGGACCAACTCAACGAG
1 TCGCATCCAT-T-ATGAAATCAGACCAACTCAACGAG
102102946 TTCCGATTTC
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 6 0.09
44 40 0.61
45 20 0.30
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (44 bp):
TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
Found at i:102112648 original size:48 final size:47
Alignment explanation
Indices: 102112571--102112670 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 47
102112561 TATATATTGT
*
102112571 CACCCTGATTGCCAACAACGATGGTTTTCTCAATTGGATTAATCTGC
1 CACCCTGATTGCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
*
102112618 CACCCTGATTGCCCAACAATGATGATTTTCTCAATTGGATTAATCTGC
1 CACCCTGATTG-CCAACAACGATGATTTTCTCAATTGGATTAATCTGC
102112666 CACCC
1 CACCC
102112671 AAGGTTTCCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 11 0.22
48 39 0.78
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (47 bp):
CACCCTGATTGCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
Found at i:102114284 original size:40 final size:40
Alignment explanation
Indices: 102114240--102114336 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 40
102114230 TTTTCGAATC
*
102114240 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTCATCCGAAAGGATAACA
* *
102114280 AATGAAAAGGTTGAACAGGATGTCATCTGAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTCATCCGAAAGGATAACA
* *
102114320 GATGAAAAGGTCGAAAA
1 AATGAAAAGGTTGAAAA
102114337 TGATATCAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.47, C:0.08, G:0.26, T:0.19
Consensus pattern (40 bp):
AATGAAAAGGTTGAAAAGGATGTCATCCGAAAGGATAACA
Found at i:102115743 original size:42 final size:42
Alignment explanation
Indices: 102115680--102115766 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
102115670 CTTACCTCGC
*
102115680 GAAAGTGCCAGGGGTTTCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
*
102115722 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATTGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
102115764 GAA
1 GAA
102115767 GGGATCCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (42 bp):
GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
Found at i:102118304 original size:130 final size:130
Alignment explanation
Indices: 102117968--102118308 Score: 343
Period size: 130 Copynumber: 2.6 Consensus size: 130
102117958 GCATTTGACA
* * * * * *
102117968 ATTTGAGAATCATGCCCTATCGTGCTAGGTTGTGATTTCTCGTTTG-CTCAAAACGATCGAACAT
1 ATTTGAGAATCATGCCCTATCGTGCTAGGTTGCGCTTTTTCATTGGTC-CAAAACAATCGAACAT
* * * ** * *
102118032 TCCTTTA-TATTCTCACTCATGTTT-ATAAAAAATAC-TTAAAAATGAAGACGATGTTCAATATT
65 CCCTTCAGAATT-TCACTCACATTTCCT--AAAAT-CTTTCAAAATGAAGACGATGTTCAATATT
102118094 TGGCG
126 TGGCG
* * *
102118099 ATTTGAGAATCATGCCCTATCGTGCTAGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATC
1 ATTTGAGAATCATGCCCTATCGTGCTAGGTTGCGCTTTTTCATTGGTCCAAAACAATCGAACATC
* * * *
102118164 CCTTCGGAATTTCACTCACATTTCCTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGCG
66 CCTTCAGAATTTCACTCACATTTCCTAAAATCTTTCAAAATGAAGACGATGTTCAATATTTGGCG
* * * * * *
102118229 ATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGCGCTTTTTTATTTGTCCAAAATAATCGAATAT
1 ATTTGAGAATC-ATGCCCTATCGTGCTAGGTTGCGCTTTTTCATTGGTCCAAAACAATCGAACAT
102118293 CTCC-TCAGAATTTCAC
65 C-CCTTCAGAATTTCAC
102118309 ACGTATTTTA
Statistics
Matches: 174, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
129 1 0.01
130 98 0.56
131 71 0.41
132 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (130 bp):
ATTTGAGAATCATGCCCTATCGTGCTAGGTTGCGCTTTTTCATTGGTCCAAAACAATCGAACATC
CCTTCAGAATTTCACTCACATTTCCTAAAATCTTTCAAAATGAAGACGATGTTCAATATTTGGCG
Found at i:102129840 original size:44 final size:44
Alignment explanation
Indices: 102129765--102130244 Score: 566
Period size: 44 Copynumber: 10.9 Consensus size: 44
102129755 GAATCCTACG
* * * * * *
102129765 GATTTGGCATCTCTATATTGTCAGAGGGCAGATTGAAGATAGTA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * *
102129809 AATTTGACGA-CTCTGTATTGGCAGACAGCAGATCGAAGATAGCA
1 GATTTGGC-ATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * *
102129853 GATTTGGCATCTTTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* *
102129897 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * *
102129941 GATTTGGCATTTCTGTATTGGCGGGGAACAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
*
102129985 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * *
102130029 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * *
102130073 GATTTGGCGTCTCTGTATTGGTGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
*
102130117 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * * * * * * *
102130161 GACTTGGCGTCTCTGTAGTGTCAGAGGGCGGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * * *
102130205 GATTTGGCGTCTCTGTGACTGACAGAGAGCAAATCGAAGA
1 GATTTGGCATCTCTGT-ATTGGCGGAGAGCAGATCGAAGA
102130245 CAACGAATCT
Statistics
Matches: 373, Mismatches: 60, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
43 1 0.00
44 354 0.95
45 18 0.05
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
Found at i:102129914 original size:88 final size:88
Alignment explanation
Indices: 102129765--102130220 Score: 637
Period size: 88 Copynumber: 5.2 Consensus size: 88
102129755 GAATCCTACG
* * * ** * * * *
102129765 GATTTGGCATCTCTATATTGTCAGAGG-GCAGATTGAAGATAGTAAATTTGACGACTCTGTATTG
1 GATTTGGCATCTCTGTATTGGC-GGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTG
*
102129829 GCAGACAGCAGATCGAAGATAGCA
65 GCAGAGAGCAGATCGAAGATAGCA
*
102129853 GATTTGGCATCTTTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
* *
102129918 CGGAGAGCAGATCGAAGATAGTA
66 CAGAGAGCAGATCGAAGATAGCA
* *
102129941 GATTTGGCATTTCTGTATTGGCGGGGAACAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
*
102130006 CGGAGAGCAGATCGAAGATAGCA
66 CAGAGAGCAGATCGAAGATAGCA
*
102130029 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
*
102130094 -TGAAGAGCAGATCGAAGATAGCA
66 CAG-AGAGCAGATCGAAGATAGCA
* * * *
102130117 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCAGACTTGGCGTCTCTGTAGTGT
1 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
* * * *
102130182 CAGAGGGCGGATCAAAGATAACA
66 CAGAGAGCAGATCGAAGATAGCA
*
102130205 GATTTGGCGTCTCTGT
1 GATTTGGCATCTCTGT
102130221 GACTGACAGA
Statistics
Matches: 333, Mismatches: 32, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
87 4 0.01
88 328 0.98
89 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGG
CAGAGAGCAGATCGAAGATAGCA
Found at i:102132509 original size:2 final size:2
Alignment explanation
Indices: 102132497--102132532 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
102132487 TATATTATCA
* *
102132497 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102132533 CTTATTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102133556 original size:131 final size:129
Alignment explanation
Indices: 102133366--102133662 Score: 287
Period size: 130 Copynumber: 2.3 Consensus size: 129
102133356 TTGACAATTC
* * * * * *
102133366 GAGAATCATGCCCTATCGTGCTGGGTTATG-A-TTTCTCGTTTGCTCAAAACGATCGAACATTCC
1 GAGAATCGTGCCCTATCGTGCTGGG-T-TGCACTTTTTCATTGGCTCAAAACAATCGAACATCCC
* **
102133429 TT-TATATTCTCACTCATGTTTATAAAAAATAC-TTAAAAACGAAGACGATGTTCAATATTTGGC
64 TTCGA-ATT-TCACTCACATTTAT-AAAAAT-CTTTAAAAACGAAGACGATGTTCAATATTTGGC
102133492 GATTT
125 GATTT
* * *
102133497 GAGAATCGTGCCCTATCGTGCTGGGTTGCACTTTTTCATTGGTTCGAAACAATTGAACATCCCTT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCACTTTTTCATTGGCTCAAAACAATCGAACATCCCTT
* * * * * * *
102133562 CGGAATTTCACTCACATTTCTTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGCGATTT
66 C-GAATTTCACTCACATTTATAAAAATCTTTAAAAACGAAGACGATGTTCAATATTTGGCGATTT
* * * * *
102133627 GAGAATCGAGCCCTATCATGTTGGGTTACGCTTTTT
1 GAGAATCGTGCCCTATCGTGCTGGGTTGCACTTTTT
102133663 TATTTGTCCA
Statistics
Matches: 137, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
129 3 0.02
130 69 0.50
131 61 0.45
132 3 0.02
133 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (129 bp):
GAGAATCGTGCCCTATCGTGCTGGGTTGCACTTTTTCATTGGCTCAAAACAATCGAACATCCCTT
CGAATTTCACTCACATTTATAAAAATCTTTAAAAACGAAGACGATGTTCAATATTTGGCGATTT
Found at i:102133634 original size:130 final size:130
Alignment explanation
Indices: 102133464--102133702 Score: 327
Period size: 130 Copynumber: 1.8 Consensus size: 130
102133454 AAAATACTTA
* * *
102133464 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCACT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGTTACACT
* *
102133529 TTTTCATTGGTTCGAAACAATTGAACATC-CCTTCGGAATTTCACTCACATTTCTTAAAATCTTT
66 TTTTCATTGGTCCAAAACAATTGAACATCTCC-TCGGAATTTCACTCACATTTCTTAAAATCTTT
102133593 C
130 C
* * * * * *
102133594 AAAATGAAGGCGATGTTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCATGTTGGGTTACGCT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGTTACACT
* * * *
102133659 TTTTTATTTGTCCAAAATAATTGAATATCTCCTCGGAATTTCAC
66 TTTTCATTGGTCCAAAACAATTGAACATCTCCTCGGAATTTCAC
102133703 ACGTATTTTA
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
130 91 0.98
131 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGTTACACT
TTTTCATTGGTCCAAAACAATTGAACATCTCCTCGGAATTTCACTCACATTTCTTAAAATCTTTC
Found at i:102139570 original size:40 final size:40
Alignment explanation
Indices: 102139490--102139713 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
102139480 AAACCAAGTA
* * * * *
102139490 CCTTCGGGATTTAG-CCGGATATCGCAACTGGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
102139529 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
102139569 CCTTCGGGTCTTAGCCCGAAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
102139609 CCTTTGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
* *
102139652 CCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
102139692 CCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATA
102139714 ACATCCGAAT
Statistics
Matches: 151, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 12 0.08
40 105 0.70
42 1 0.01
43 33 0.22
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:102139665 original size:83 final size:83
Alignment explanation
Indices: 102139515--102139710 Score: 238
Period size: 83 Copynumber: 2.4 Consensus size: 83
102139505 CGGATATCGC
* * * * * * *
102139515 AACTGGCATAAATGCCTTCGGGACTTAACCCGGATATAG-TA--ACTCGCACACATGCCTTCGGG
1 AACTAGCACAAATGCCTTCGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
*
102139577 TCTTAGCCC-GAAAATAGT
66 ACTTAGCCCAG-AAATAGT
* *
102139595 CACTAGCACAAATGCCTTTGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
1 AACTAGCACAAATGCCTTCGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
*
102139660 ACTTAGCCCAGATATAGT
66 ACTTAGCCCAGAAATAGT
* *
102139678 AACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 AACTAGCACAAATGCCTTCGGAACTTAGCCCGG
102139711 ATAACATCCG
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 32 0.33
81 1 0.01
83 63 0.65
84 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (83 bp):
AACTAGCACAAATGCCTTCGGAACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
ACTTAGCCCAGAAATAGT
Found at i:102145441 original size:68 final size:67
Alignment explanation
Indices: 102145369--102145518 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
102145359 CATCATGTGT
* * * *
102145369 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
102145431 ATGTAG
62 ATGTAG
** * *
102145437 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
102145502 AG
66 AG
102145504 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
102145519 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:102145474 original size:64 final size:64
Alignment explanation
Indices: 102145393--102145576 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
102145383 AGACATTATG
* *
102145393 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
102145457 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
102145522 AA
63 AA
* * * *
102145524 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
102145577 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:102149880 original size:68 final size:67
Alignment explanation
Indices: 102149808--102149957 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
102149798 CATCATGTGT
* * * *
102149808 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
102149870 ATGTAG
62 ATGTAG
** * *
102149876 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
102149941 AG
66 AG
102149943 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
102149958 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:102149913 original size:64 final size:64
Alignment explanation
Indices: 102149832--102150015 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
102149822 AGACATTATG
* *
102149832 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
102149896 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
102149961 AA
63 AA
* * * *
102149963 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
102150016 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:102155964 original size:40 final size:40
Alignment explanation
Indices: 102155895--102156119 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
102155885 AAACCAAGTA
* * *
102155895 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
102155934 CCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
102155974 CCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
102156014 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
102156057 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
102156097 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
102156120 CATCCGAATA
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
39 12 0.08
40 108 0.69
42 1 0.01
43 35 0.22
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:102156095 original size:83 final size:80
Alignment explanation
Indices: 102155895--102156119 Score: 290
Period size: 83 Copynumber: 2.8 Consensus size: 80
102155885 AAACCAAGTA
* * * * *
102155895 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
102155959 TAACTCACACACATG
66 CAACTCACACAAATG
* * * * *
102155974 CCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
102156039 CAACTACTCGTACAAATG
66 CAACT-CAC--ACAAATG
*
102156057 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
102156120 CATCCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 12 0.10
80 46 0.37
81 2 0.02
83 63 0.51
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTCACACAAATG
Found at i:102159098 original size:27 final size:27
Alignment explanation
Indices: 102158651--102159097 Score: 515
Period size: 27 Copynumber: 16.6 Consensus size: 27
102158641 AAAGTACTCC
*
102158651 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
102158678 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
102158705 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
102158732 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102158759 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102158786 CAATTTACA-AATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
102158812 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
102158839 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102158866 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
102158893 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTATAGAATTACCGTTTTACCCT
* * * * *
102158919 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTATAGAATTACCGTTTTACCCT
* * *
102158947 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102158974 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * *
102159001 CGATTTACAGTATTTCCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
102159028 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
102159055 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102159082 CGATTTACAAAATTAC
1 CGATTTATAGAATTAC
102159098 TAAAATACCC
Statistics
Matches: 368, Mismatches: 45, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
25 1 0.00
26 25 0.07
27 339 0.92
28 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTATAGAATTACCGTTTTACCCT
Found at i:102159120 original size:27 final size:27
Alignment explanation
Indices: 102159076--102159161 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
102159066 ATTACTGTTT
* ** *
102159076 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*** **
102159103 TACCCTTGGTTTGTAAAATTACCGCAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
102159130 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
102159157 TACCC
1 TACCC
102159162 CTGTATGGTA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:102159135 original size:81 final size:81
Alignment explanation
Indices: 102158620--102159126 Score: 540
Period size: 81 Copynumber: 6.3 Consensus size: 81
102158610 TACTGAAATG
* ****
102158620 CCCTCGACTTGTAAAATTACCAAAGTACTCC-CGATTTACAGAATTACCGTTTTACCCTC-AGTT
1 CCCTCGATTTGTAAAATTACCGTTTTAC-CCTCGATTTACAGAATTACCGTTTTACCCTCGA-TT
* * *
102158683 TATAGAATTACTATTTTA
64 TACAAAATTACCATTTTA
* *
102158701 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTG
1 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
* *
102158766 TAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* * **
102158782 CCCTC-AATT-TACAAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATT
1 CCCTCGATTTGTA-AAATTACCGTTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATT
** *
102158844 TGTAAAATTACCGTTTTA
64 TACAAAATTACCATTTTA
* *
102158862 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTT
1 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTT
*
102158926 ACATAATTACCATTTTA
65 ACAAAATTACCATTTTA
* ** * * *
102158943 CCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
** *
102159008 CAGTATTTCCATTTTA
66 CAAAATTACCATTTTA
* * ** * *
102159024 CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
* ***
102159089 CAAAATTACTAAAATA
66 CAAAATTACCATTTTA
* *
102159105 CCCTTGGTTTGTAAAATTACCG
1 CCCTCGATTTGTAAAATTACCG
102159127 CAATACCCTC
Statistics
Matches: 363, Mismatches: 54, Indels: 18
0.83 0.12 0.04
Matches are distributed among these distances:
79 3 0.01
80 75 0.21
81 280 0.77
82 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:102160304 original size:25 final size:25
Alignment explanation
Indices: 102160276--102160323 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102160266 TTATACCATG
* * *
102160276 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102160301 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102160324 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102160426 original size:20 final size:20
Alignment explanation
Indices: 102160366--102160426 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
102160356 ATAAATATGG
*
102160366 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
102160386 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
102160406 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
102160426 T
1 T
102160427 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:102160503 original size:24 final size:24
Alignment explanation
Indices: 102160476--102160618 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
102160466 GAGGAAGTGA
102160476 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102160500 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102160524 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
102160547 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
102160571 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
102160595 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102160619 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102160569 original size:47 final size:47
Alignment explanation
Indices: 102160476--102160618 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
102160466 GAGGAAGTGA
102160476 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
102160524 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
102160571 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
102160619 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:102160592 original size:71 final size:72
Alignment explanation
Indices: 102160476--102160619 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
102160466 GAGGAAGTGA
*
102160476 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
102160539 CCAGTTAT
65 CCAGTTAT
** * *
102160547 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
102160612 CAGTTAT
66 CAGTTAT
102160619 A
1 A
102160620 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:102160844 original size:31 final size:31
Alignment explanation
Indices: 102160809--102160872 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102160799 CGTTTACAGT
*
102160809 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
102160840 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102160871 AA
1 AA
102160873 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102164025 original size:187 final size:187
Alignment explanation
Indices: 102163699--102164143 Score: 594
Period size: 187 Copynumber: 2.4 Consensus size: 187
102163689 AAAGTACTCC
* * * * *
102163699 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTGTAA
1 CGATTTATAAAATTACCGTTTTACCCTCGA-TTT-TAAAATTACTGTTTTACCCTCGATTTATAA
* * * **
102163763 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
64 AATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* *
102163828 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTA-CCT
129 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATT-CCATTTTACCCT
* * *
102163887 CGATTTGTAAAATTACCGTTTTACCCTCGATTTTAAAATTACCGTTTTACCCTCGATTTATAGAA
1 CGATTTATAAAATTACCGTTTTACCCTCGATTTTAAAATTACTGTTTTACCCTCGATTTATAAAA
* * *
102163952 TTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCCTCGATTTACATAATTATCGTTTT
66 TTACCGTTTTACCCTC-AATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTT
102164016 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTCCATTTTACCCT
130 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTCCATTTTACCCT
* * * *
102164074 CGATTTATAGAATTACTGTTTTACCCTTGA-TTTACAGAATTACTGTTTTACCCTCGATTTACAA
1 CGATTTATAAAATTACCGTTTTACCCTCGATTTTA-A-AATTACTGTTTTACCCTCGATTTATAA
102164138 AATTAC
64 AATTAC
102164144 TAAAATACCC
Statistics
Matches: 226, Mismatches: 25, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
186 12 0.05
187 154 0.68
188 59 0.26
189 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (187 bp):
CGATTTATAAAATTACCGTTTTACCCTCGATTTTAAAATTACTGTTTTACCCTCGATTTATAAAA
TTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTCCATTTTACCCT
Found at i:102164144 original size:27 final size:27
Alignment explanation
Indices: 102163699--102164143 Score: 560
Period size: 27 Copynumber: 16.6 Consensus size: 27
102163689 AAAGTACTCC
*
102163699 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
102163726 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
102163753 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
102163780 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102163807 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
102163834 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
102163861 C-AGTTTATAGAATTACTATTTTA-CCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
102163887 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
102163914 CGATTT-TAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
102163940 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTATAGAATTACCGTTTTACCCT
* * * *
102163966 CTAATTTACATAATTACCATTTTACCCT
1 C-GATTTATAGAATTACCGTTTTACCCT
* * *
102163994 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
102164021 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102164048 CGATTTACAGAATT-CCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
102164074 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
102164101 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
102164128 CGATTTACAAAATTAC
1 CGATTTATAGAATTAC
102164144 TAAAATACCC
Statistics
Matches: 370, Mismatches: 39, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
26 73 0.20
27 295 0.80
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTATAGAATTACCGTTTTACCCT
Found at i:102164182 original size:134 final size:134
Alignment explanation
Indices: 102163700--102164172 Score: 634
Period size: 134 Copynumber: 3.5 Consensus size: 134
102163690 AAGTACTCCC
*
102163700 GATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTGTAAAA
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTGTAAAA
* *
102163765 TTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTA
66 TTACCGTTTTACCCTCGATTTA-AGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
*
102163830 CCCTC
130 CCCTT
*
102163835 GATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTA-CCTCGATTTGTAAAA
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTGTAAAA
102163899 TTACCGTTTTACCCTCGATTTTAA-AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
66 TTACCGTTTTACCCTCGA-TTTAAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
*
102163963 CCCCT
130 CCCTT
* * * * * ** *
102163968 AATTTACATAATTACCATTTTACCCTC-GATTTACATAATTA-TCGTTTTACCCTCGATTTACAG
1 GATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACT-ATTTTACCCTCGATTTGTAA
* *
102164031 AATTACCGTTTTACCCTCGATTTACAGAATT-CCATTTTACCCTCGATTTATAGAATTACTGTTT
64 AATTACCGTTTTACCCTCGATTTA-AGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
102164095 TACCCTT
128 TACCCTT
* * *** * * *
102164102 GATTTACAGAATTACTGTTTTACCCTC-GATTTACAAAATTACTAAAATACCCTTGGTTTGTGAA
1 GATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCTCGATTTGTAAA
102164166 ATTACCG
65 ATTACCG
102164173 CAATACCCTC
Statistics
Matches: 300, Mismatches: 31, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
132 2 0.01
133 84 0.28
134 156 0.52
135 58 0.19
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (134 bp):
GATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTGTAAAA
TTACCGTTTTACCCTCGATTTAAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTAC
CCTT
Found at i:102165349 original size:25 final size:25
Alignment explanation
Indices: 102165320--102165367 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102165310 CCTTATAATG
* * *
102165320 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102165345 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102165368 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102165470 original size:20 final size:20
Alignment explanation
Indices: 102165410--102165470 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
102165400 ATAAATATGG
*
102165410 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
102165430 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
102165450 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
102165470 T
1 T
102165471 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:102165546 original size:24 final size:24
Alignment explanation
Indices: 102165519--102165661 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
102165509 GAGGAAGTGA
102165519 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102165543 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102165567 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
102165590 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
102165614 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
102165638 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102165662 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102165612 original size:47 final size:47
Alignment explanation
Indices: 102165519--102165661 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
102165509 GAGGAAGTGA
102165519 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
102165567 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
102165614 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
102165662 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:102165635 original size:71 final size:72
Alignment explanation
Indices: 102165519--102165662 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
102165509 GAGGAAGTGA
*
102165519 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
102165582 CCAGTTAT
65 CCAGTTAT
** * *
102165590 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
102165655 CAGTTAT
66 CAGTTAT
102165662 A
1 A
102165663 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:102166783 original size:53 final size:53
Alignment explanation
Indices: 102166704--102166871 Score: 195
Period size: 53 Copynumber: 3.2 Consensus size: 53
102166694 TAGCCATGTT
* *
102166704 TAAAATA-CTTTGGTTTACAAAATTACCAAAATA-CCCTGCTTTGTAAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTG-TTTGTAAAATTAC
102166756 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTAC
* * * *
102166809 TCAAAATACCC-TAGTTTGTAAAATTA-C-AAATACCCCTAATTTGTGAAATTAC
1 T-AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTAC
*
102166861 TGAAATACCCT
1 TAAAATACCCT
102166872 CGACCTATAA
Statistics
Matches: 103, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
51 30 0.29
52 9 0.09
53 38 0.37
54 25 0.24
55 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (53 bp):
TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGTTTGTAAAATTAC
Found at i:102166787 original size:27 final size:26
Alignment explanation
Indices: 102166722--102166871 Score: 160
Period size: 27 Copynumber: 5.7 Consensus size: 26
102166712 TTTGGTTTAC
*
102166722 AAAATTACCAAAATACCCTGCTTTGT
1 AAAATTACCAAAATACCCTGGTTTGT
* *
102166748 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCC-TGGTTTGT
*
102166775 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* *
102166802 AAAATTATCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTGGTTTGT
**
102166828 AAAATTA-C-AAATACCCCTAATTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* **
102166853 GAAATTACTGAAATACCCT
1 AAAATTACCAAAATACCCT
102166872 CGACCTATAA
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.05
25 17 0.16
26 39 0.36
27 45 0.41
28 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.32
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGGTTTGT
Found at i:102166908 original size:25 final size:26
Alignment explanation
Indices: 102166849--102166924 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 26
102166839 TACCCCTAAT
102166849 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGT-AAATTACTGAAATACCCTCGAC
* * *
102166876 CTAT-AATTATTG-AATACCCTCGAC
1 TTGTAAATTACTGAAATACCCTCGAC
*
102166900 TTGTAAATTAC-CAAAGTACCCTCGA
1 TTGTAAATTACTGAAA-TACCCTCGA
102166925 TTTATAGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
24 14 0.36
25 14 0.36
26 9 0.23
27 2 0.05
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (26 bp):
TTGTAAATTACTGAAATACCCTCGAC
Found at i:102166923 original size:26 final size:25
Alignment explanation
Indices: 102166890--102166991 Score: 78
Period size: 26 Copynumber: 3.9 Consensus size: 25
102166880 AATTATTGAA
*
102166890 TACCCTCGACTTGTAAATTACCAAAG
1 TACCCTCGATTTGTAAATTACC-AAG
* ***
102166916 TACCCTCGATTTATAGAATTACCGTT
1 TACCCTCGATTTGTA-AATTACCAAG
***
102166942 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTGT-AAATTACC-AAG
*
102166969 TACCCTCGATTTATAGAATTACC
1 TACCCTCGATTTGTA-AATTACC
102166992 GTTTTACCCT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 34 0.53
27 30 0.47
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (25 bp):
TACCCTCGATTTGTAAATTACCAAG
Found at i:102166978 original size:27 final size:27
Alignment explanation
Indices: 102166916--102167232 Score: 360
Period size: 27 Copynumber: 11.9 Consensus size: 27
102166906 ATTACCAAAG
102166916 TACCCTCGATTTATAGAATTACCG-TT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
102166942 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
102166969 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
102166996 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
102167023 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
** * *
102167050 TACCCTTAATTTACATAATTACCG-TT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
102167076 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
102167103 TACCCTCAACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
102167130 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
102167157 TACCCCTCGATTTATAGAATTACTGTTT
1 TA-CCCTCGATTTATAGAATTACCGTTT
* * **
102167185 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
102167212 TA-CC-CGATTTACA-AATTACCG
1 TACCCTCGATTTATAGAATTACCG
102167233 AAATACCCTC
Statistics
Matches: 253, Mismatches: 31, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
24 6 0.02
25 8 0.03
26 47 0.19
27 165 0.65
28 27 0.11
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:102167043 original size:107 final size:108
Alignment explanation
Indices: 102166916--102167216 Score: 401
Period size: 107 Copynumber: 2.8 Consensus size: 108
102166906 ATTACCAAAG
*
102166916 TACCCTCGATTTATAGAATTACCG-TTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
* ** *
102166980 TATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
66 TACAGAATTACCGTTTTACCCTCAACTTACAGAATTACCATTT
** * *
102167023 TACCCTCGATTTATAGAATTACCGTTTTACCCTTAATTTACATAATTACCG-TTTACCC-CTGAT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTC-GAT
* * *
102167086 TTACATAATTATCGTTTTACCCTCAACTTACAGAATTACCGTTT
65 TTACAGAATTACCGTTTTACCCTCAACTTACAGAATTACCATTT
* * * *
102167130 TACCCTCGATTTACAGAATTACCGTTTTACCCCTCGATTTATAGAATTACTGTTTTACCCTTGAT
1 TACCCTCGATTTATAGAATTACCGTTTTA-CCCTCGATTTATAAAATTACCGTTTTACCCTCGAT
**
102167195 TTACAGAATTACTATTTTACCC
65 TTACAGAATTACCGTTTTACCC
102167217 GATTTACAAA
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
106 1 0.01
107 99 0.60
108 38 0.23
109 28 0.17
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (108 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
TACAGAATTACCGTTTTACCCTCAACTTACAGAATTACCATTT
Found at i:102167255 original size:27 final size:26
Alignment explanation
Indices: 102167218--102167294 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 26
102167208 ATTTTACCCG
102167218 ATTTAC-AAATTACCGAAATACCCTCA
1 ATTTACAAAATTACCGAAATACCCT-A
** * *
102167244 ATTTGTAAAATTACCAAAATACCCTG
1 ATTTACAAAATTACCGAAATACCCTA
* *
102167270 ATTTACAAAGTTACAGAAATACCCT
1 ATTTACAAAATTACCGAAATACCCT
102167295 TGACTTTTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 24 0.59
27 17 0.41
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (26 bp):
ATTTACAAAATTACCGAAATACCCTA
Found at i:102167347 original size:27 final size:27
Alignment explanation
Indices: 102167271--102167355 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
102167261 AATACCCTGA
* * * *
102167271 TTTACAAAGTTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTG-G
** *
102167299 TTTTTAAAATTA-TAGAAGTACCATTGG
1 TTTACAAAATTACT-GAAATACCATTGG
*
102167326 TTTACAAAATTACTGAAATACCTTTGG
1 TTTACAAAATTACTGAAATACCATTGG
102167353 TTT
1 TTT
102167356 GTTGATTTAC
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:102167444 original size:27 final size:27
Alignment explanation
Indices: 102167407--102167470 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
102167397 TACCCTAAAA
102167407 GGTAAAA-GACCGTAA-AGCCCCTGTAG
1 GGTAAAATGACCGTAATA-CCCCTGTAG
* *
102167433 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
102167460 GGTAAAATGAC
1 GGTAAAATGAC
102167471 GAATATGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:102169149 original size:70 final size:71
Alignment explanation
Indices: 102169066--102169228 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
102169056 CGATTTGTCT
102169066 CGTAGCTCTCTTGTCTACATGGTGT-CTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102169130 CTTTCA
66 CTTTCA
102169136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102169201 CTTTCA
66 CTTTCA
102169207 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
102169229 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 25 0.27
71 67 0.73
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:102169266 original size:71 final size:70
Alignment explanation
Indices: 102169066--102169262 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
102169056 CGATTTGTCT
* * *
102169066 CGTAGCTCTCTTGTCTACATGGTGT-CTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
102169130 CTTTCA
65 CTTTCA
* * * *
102169136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
102169201 CTTTCA
65 CTTTCA
* *
102169207 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
102169263 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 26 0.22
71 70 0.59
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:102171413 original size:25 final size:25
Alignment explanation
Indices: 102171384--102171431 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102171374 TTATAATATG
* * *
102171384 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102171409 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102171432 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102171500 original size:20 final size:20
Alignment explanation
Indices: 102171475--102171533 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
102171465 TAAATATGGT
102171475 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
102171495 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
102171515 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102171534 GATAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102171628 original size:23 final size:24
Alignment explanation
Indices: 102171584--102171749 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
102171574 GAGGAAGTGA
102171584 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102171608 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102171631 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102171655 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
102171678 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
102171702 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
102171726 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102171750 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102171653 original size:47 final size:47
Alignment explanation
Indices: 102171584--102171749 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
102171574 GAGGAAGTGA
102171584 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
102171630 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
102171678 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
102171726 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102171750 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 80 0.72
48 20 0.18
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:102171700 original size:71 final size:70
Alignment explanation
Indices: 102171584--102171750 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 70
102171574 GAGGAAGTGA
102171584 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
102171649 GTTATC
65 GTTATC
** *
102171655 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCA
*
102171720 GTTATT
65 GTTATC
*
102171726 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
102171751 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 13 0.15
71 63 0.72
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:102171988 original size:30 final size:31
Alignment explanation
Indices: 102171941--102172032 Score: 154
Period size: 30 Copynumber: 3.1 Consensus size: 31
102171931 CGTTTACAGT
102171941 AAAGGCTTCGG-CCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102171970 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
102172001 AAAGGCTTC-GCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102172031 AA
1 AA
102172033 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
29 11 0.18
30 37 0.62
31 12 0.20
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102174978 original size:27 final size:27
Alignment explanation
Indices: 102174959--102175279 Score: 412
Period size: 27 Copynumber: 11.9 Consensus size: 27
102174949 ATTACCAAAG
*
102174959 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
102174986 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
102175013 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
102175040 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
102175067 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
** * *
102175094 TACCCTTAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
102175121 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
102175148 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
102175175 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
102175202 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
102175229 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
102175256 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
102175280 AAATACCTTC
Statistics
Matches: 261, Mismatches: 29, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.00
27 258 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:102175286 original size:27 final size:27
Alignment explanation
Indices: 102174753--102175396 Score: 199
Period size: 27 Copynumber: 23.8 Consensus size: 27
102174743 AATACTTTGG
* * *
102174753 TTTACAAAATTACCAAAATACCCT-GC
1 TTTATAAAATTACCGAAATACCCTCGA
* ** * *
102174779 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCGAAATACCCTCGA
* *
102174806 TTTATAAAATTACCAAAATACCC-CTA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * * *
102174832 GTTTGTTAAATTATCAAAATACCC-CTA
1 -TTTATAAAATTACCGAAATACCCTCGA
* * *
102174859 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTATAAAATTACCGAAATACCCTC-GA
* * *
102174887 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
** * **
102174914 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
102174941 CTTGTAAAATTACC-AAAGTACCCTCGA
1 TTTATAAAATTACCGAAA-TACCCTCGA
* * ***
102174968 TTTATAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
102174995 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
102175022 TTTATAGAATTACCGTTTTACCCTC-A
1 TTTATAAAATTACCGAAATACCCTCGA
* * * **
102175048 GTTTACAGAATTA-CTATTTTACCCTCGA
1 -TTTATAAAATTACCGA-AATACCCTCGA
* *** **
102175076 TTTATAGAATTACCGTTTTACCCTTAA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
102175103 TTTACATAATTACCGTTTTACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * * ***
102175130 TTTACATAATTATCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
102175157 CTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
102175184 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * *** *
102175211 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
102175238 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * *
102175265 TTTACAAAATTACCGAAATACCTTCAA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
102175292 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * * *
102175319 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ** * * * *
102175346 CTTTTTAAAAATTATAGAAGTACCATTGG
1 -TTTAT-AAAATTACCGAAATACCCTCGA
* *
102175375 TTTACAAAATTACTGAAATACC
1 TTTATAAAATTACCGAAATACC
102175397 TTTGGTTTGT
Statistics
Matches: 512, Mismatches: 90, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
26 27 0.05
27 457 0.89
28 11 0.02
29 17 0.03
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTATAAAATTACCGAAATACCCTCGA
Found at i:102175314 original size:81 final size:81
Alignment explanation
Indices: 102175002--102175324 Score: 225
Period size: 81 Copynumber: 4.0 Consensus size: 81
102174992 CGATTTGTAA
* * *** * * * * ***
102175002 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAAA
* *
102175067 TACCCTCGATTTATAG
66 TACCCTTGATTTACAG
** * *** * * * * ***
102175083 AATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTT
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTC-AATTTATAAAATTACCAAA
* * *
102175147 TTACCCTCGACTTACAG
65 ATACCCTTGATTTACAG
* *** * * *****
102175164 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAAA
102175229 TACCCTTGATTTACAG
66 TACCCTTGATTTACAG
* * *
102175245 AATTACTGTTTTACCCTCGATTTACAAAATTACCGAAATACCTTCAATTTGTAAAATTACCAAAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAAA
*
102175310 TACCCCTGATTTACA
66 TACCCTTGATTTACA
102175325 AAGTTACAGA
Statistics
Matches: 204, Mismatches: 36, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 202 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAAA
TACCCTTGATTTACAG
Found at i:102175522 original size:27 final size:27
Alignment explanation
Indices: 102175458--102175522 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
102175448 ACCCCTAAAA
*
102175458 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
102175485 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
102175512 GGTAAAATGAC
1 GGTAAAATGAC
102175523 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:102176855 original size:25 final size:25
Alignment explanation
Indices: 102176826--102176873 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102176816 TTATAATATG
* * *
102176826 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102176851 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102176874 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102176942 original size:20 final size:20
Alignment explanation
Indices: 102176917--102176975 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
102176907 TAAATATGGT
102176917 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
102176937 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
102176957 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102176976 GATAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102177053 original size:24 final size:24
Alignment explanation
Indices: 102177026--102177178 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
102177016 GAGGAAGTGA
102177026 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
102177050 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102177074 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
102177098 AAAAGGGCTTATGGCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
102177121 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
102177145 GAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
102177169 AAAAGAGGCT
1 AAAAG-GGCT
102177179 AGGCCTCTAG
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
23 22 0.18
24 93 0.78
25 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102177420 original size:31 final size:31
Alignment explanation
Indices: 102177384--102177478 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
102177374 CGTTTACAGT
* *
102177384 AAAGGCTTCGGCCTAGTAATATGAAATCTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102177415 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
102177446 AAAGGCTTCAGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102177477 AA
1 AA
102177479 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102178355 original size:31 final size:31
Alignment explanation
Indices: 102178320--102178383 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102178310 CGTTTACAGT
*
102178320 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
102178351 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102178382 AA
1 AA
102178384 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102191662 original size:39 final size:40
Alignment explanation
Indices: 102191608--102191761 Score: 204
Period size: 39 Copynumber: 3.9 Consensus size: 40
102191598 TGTGAATGAA
* *
102191608 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
102191647 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
102191686 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* ** * *
102191726 TGTGCGGGTTACCATAACCGGGCTACGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGG
102191762 TGTTTTGAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 62 0.61
40 40 0.39
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:102191747 original size:79 final size:79
Alignment explanation
Indices: 102191608--102191761 Score: 220
Period size: 79 Copynumber: 1.9 Consensus size: 79
102191598 TGTGAATGAA
** *
102191608 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
102191673 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
102191686 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
102191751 CGTCCCGAAGG
65 AGTCCCGAAGG
102191762 TGTTTTGAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
78 25 0.38
79 33 0.50
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:102199573 original size:39 final size:39
Alignment explanation
Indices: 102199519--102199647 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 39
102199509 TGTGAATGAA
* *
102199519 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
102199558 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
102199597 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
*
102199637 TGTGCGGGTTA
1 TGTGCGAGTTA
102199648 CCATAACGGG
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 62 0.76
40 20 0.24
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:102199658 original size:78 final size:79
Alignment explanation
Indices: 102199519--102199671 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 79
102199509 TGTGAATGAA
** *
102199519 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAA
102199584 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
102199597 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATA-ACGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTA
*
102199661 CGTCCCGAAGG
65 AGTCCCGAAGG
102199672 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
78 33 0.51
79 32 0.49
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATATACGGGCTAA
GTCCCGAAGGCAAT
Found at i:102203195 original size:7 final size:7
Alignment explanation
Indices: 102203183--102203230 Score: 69
Period size: 7 Copynumber: 6.6 Consensus size: 7
102203173 AACGGGACGC
102203183 CACATCA
1 CACATCA
102203190 CACATCA
1 CACATCA
102203197 CAACATCA
1 C-ACATCA
102203205 CACATCA
1 CACATCA
102203212 CAACATCA
1 C-ACATCA
*
102203220 CACATTA
1 CACATCA
102203227 CACA
1 CACA
102203231 CCGTCTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
7 24 0.63
8 14 0.37
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.15
Consensus pattern (7 bp):
CACATCA
Found at i:102203204 original size:8 final size:8
Alignment explanation
Indices: 102203184--102203221 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
102203174 ACGGGACGCC
102203184 ACATCAC-
1 ACATCACA
102203191 ACATCACA
1 ACATCACA
102203199 ACATCAC-
1 ACATCACA
102203206 ACATCACA
1 ACATCACA
102203214 ACATCACA
1 ACATCACA
102203222 CATTACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 14 0.48
8 15 0.52
ACGTcount: A:0.47, C:0.39, G:0.00, T:0.13
Consensus pattern (8 bp):
ACATCACA
Found at i:102203204 original size:15 final size:15
Alignment explanation
Indices: 102203184--102203224 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
102203174 ACGGGACGCC
102203184 ACATCACACATCACA
1 ACATCACACATCACA
102203199 ACATCACACATCACA
1 ACATCACACATCACA
102203214 ACATCACACAT
1 ACATCACACAT
102203225 TACACACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (15 bp):
ACATCACACATCACA
Found at i:102203209 original size:22 final size:22
Alignment explanation
Indices: 102203184--102203230 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
102203174 ACGGGACGCC
102203184 ACATCACACATCACAACATCAC
1 ACATCACACATCACAACATCAC
*
102203206 ACATCACAACATCAC-ACATTAC
1 ACATCAC-ACATCACAACATCAC
102203228 ACA
1 ACA
102203231 CCGTCTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.15
Consensus pattern (22 bp):
ACATCACACATCACAACATCAC
Found at i:102214854 original size:48 final size:48
Alignment explanation
Indices: 102214802--102214893 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
102214792 GAAGGGATGG
* * *
102214802 ATAGTGATAGGAGTGTAGACAGTGGAAGATCAAGTTTAGTAATGATAA
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
102214850 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
102214894 CATAGCATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.40, C:0.05, G:0.29, T:0.25
Consensus pattern (48 bp):
ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
Found at i:102216851 original size:14 final size:14
Alignment explanation
Indices: 102216832--102216860 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
102216822 TACTATTTTG
102216832 GATGTGTGGTTGTA
1 GATGTGTGGTTGTA
102216846 GATGTGTGGTTGTA
1 GATGTGTGGTTGTA
102216860 G
1 G
102216861 CAAAGGAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.45, T:0.41
Consensus pattern (14 bp):
GATGTGTGGTTGTA
Found at i:102219584 original size:3 final size:3
Alignment explanation
Indices: 102219578--102219627 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
102219568 TCTTAAATAT
102219578 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102219626 TT
1 TT
102219628 CCTCTTTTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:102219785 original size:15 final size:15
Alignment explanation
Indices: 102219765--102219810 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
102219755 ACTACCACAT
* *
102219765 TTATTATTCTCGTTA
1 TTATTATTATCATTA
102219780 TTATTATTATCATTA
1 TTATTATTATCATTA
*
102219795 TTATTACTATCATTA
1 TTATTATTATCATTA
102219810 T
1 T
102219811 AATTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTATTATCATTA
Found at i:102225580 original size:19 final size:20
Alignment explanation
Indices: 102225537--102225583 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
102225527 AAAAGCAAAG
102225537 AAAAATAGATAAATAATAAGT
1 AAAAATA-ATAAATAATAAGT
*
102225558 -AAAATAATAAATGATAA-T
1 AAAAATAATAAATAATAAGT
102225576 AAAAATAA
1 AAAAATAA
102225584 ATTTAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.04
19 17 0.71
20 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (20 bp):
AAAAATAATAAATAATAAGT
Found at i:102225722 original size:3 final size:3
Alignment explanation
Indices: 102225714--102225768 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
102225704 TAGAGGGATT
102225714 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
102225762 TAA TAA T
1 TAA TAA T
102225769 GATGATGATG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:102225773 original size:3 final size:3
Alignment explanation
Indices: 102225767--102225805 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
102225757 AATAATAATA
102225767 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
102225806 GTAATATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:102225983 original size:3 final size:3
Alignment explanation
Indices: 102225971--102226147 Score: 89
Period size: 3 Copynumber: 60.3 Consensus size: 3
102225961 TTAAATTATT
* *
102225971 TAA T-A TAA TAA TAA TAA CTTA TATG TAAA TAA -AA -AA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TA-A T-AA TAA TAA TAA TAA TAA TAA
** * * * * *
102226015 TAA CGA TAA TAG TAA T-A CAA TAG TAA TAA TAA TAA TAA TAA CAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** ** * * * *
102226062 TAG TAA TAA TAA TGG CCA TAA AAA TAA TAG TAA TAG TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
102226110 TAA TAA TAA -AA -AA TAG TAA TAA TAA TAT TAT TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
102226148 GAAAATTAAA
Statistics
Matches: 130, Mismatches: 36, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
2 13 0.10
3 112 0.86
4 4 0.03
5 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:102227579 original size:44 final size:44
Alignment explanation
Indices: 102227524--102227647 Score: 185
Period size: 44 Copynumber: 2.8 Consensus size: 44
102227514 CCACTGCAAC
*
102227524 TTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAAT
1 TTCAAGGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAAT
* *
102227568 TTTAAGGAGATGAGACTTGTAGCTTCGATTTACTCTAATGTAAT
1 TTCAAGGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAAT
* * * *
102227612 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
1 TTCAAGGAGATGAGACTTGTAGCTTCGATTTACTCC
102227648 GCTGGAACTT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (44 bp):
TTCAAGGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAAT
Found at i:102227665 original size:44 final size:44
Alignment explanation
Indices: 102227529--102227666 Score: 177
Period size: 44 Copynumber: 3.1 Consensus size: 44
102227519 GCAACTTCAG
*
102227529 GGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAATTTTAA
1 GGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAATTTAAA
* * *
102227573 GGAGATGAGACTTGTAGCTTCGATTTACTCTAATGTAATTTCAG
1 GGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAATTTAAA
* * * ** * *
102227617 GGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAA
1 GGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAATTTAAA
102227661 GGAGAT
1 GGAGAT
102227667 AAAAATCACT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (44 bp):
GGAGATGAGACTTGTAGCTTCGATTTACTCCAATGTAATTTAAA
Found at i:102228008 original size:275 final size:273
Alignment explanation
Indices: 102227599--102228414 Score: 1141
Period size: 275 Copynumber: 3.0 Consensus size: 273
102227589 GCTTCGATTT
*
102227599 ACTCTAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGA
1 ACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGA
* * * * * ** *
102227664 GATAAAAATCACTGTTTTCAGTCTGCTTCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAA
66 GATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCAGTGGCTTTAA
** * * * *
102227729 TCTGCTCCACTGCGTCTTCAAGAAGATAACATCCGCCATGATTTGTGACTTTAATCTGTCCCACT
131 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAATCTGTTCCACT
*
102227794 GCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCCGCTACAACTTCAGAGAGATAGGG
194 GCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAGAGATAGGG
* **
102227859 ATGGTGCTTTGATCC
259 CTGGTGCTGCGATCC
* *
102227874 ACTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGA
1 ACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGA
* * * *
102227939 GGTAAGATTCACTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAGGGCCAATGGCTTTAA
66 GATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCAGTGGCTTTAA
102228004 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAGTTTGTAGCTTCAATCTGTTCCACT
131 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATA-TTTGTA-CTTCAATCTGTTCCACT
* * *
102228069 GCAACTCCAGGGAAATAAGATTCGTTGTCTTTAGTCTGCTCAGCTACAACTTCAGGGAGATAGGG
194 GCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAGAGATAGGG
102228134 CTGGTGCTGCGATCC
259 CTGGTGCTGCGATCC
* * * * *
102228149 ATTCCAATGTAATTTCAGGGAGAAGAGATTTGCAGCTTCGATCTACTCCACTGAAACTTTAAGGA
1 ACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGA
102228214 GATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCAGTGGCTTTAA
66 GATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCAGTGGCTTTAA
* * * * *
102228279 TCTACTCCATTGCAACTTTAGGAAGATATGATCCGCTATAATTTGTAACTTCAATCTGTTCCACT
131 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAATCTGTTCCACT
* * * ** * *
102228344 GCAAC-TCTAGAGAAATAAGATTCACTT-TCTTCAGTCTGCTCTGCTGTAACTTTAGAGAGATAA
194 GCAACTTC-AGGGAAATAAGATTC-GTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAGAGATAG
102228407 GGCTGGTG
257 GGCTGGTG
102228415 GCTTCAATCT
Statistics
Matches: 482, Mismatches: 53, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
274 3 0.01
275 475 0.99
276 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (273 bp):
ACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGA
GATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAGGGCCAGTGGCTTTAA
TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATATTTGTACTTCAATCTGTTCCACTGC
AACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAGAGATAGGGCT
GGTGCTGCGATCC
Found at i:102228439 original size:143 final size:143
Alignment explanation
Indices: 102228195--102228603 Score: 489
Period size: 143 Copynumber: 2.9 Consensus size: 143
102228185 TTCGATCTAC
* ** * * * *
102228195 TCCACTGAAACTTTAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
1 TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
* ** * * * *
102228260 ATAGGGCCAGTGGCTTTAATCTACTCCATTGCAACTTTAGGAAGATATGATCCGCTATAATTTGT
66 ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATATGATCCGCCATAATTTGT
102228325 AACTTCAATCTGT
131 AACTTCAATCTGT
* * * *
102228338 TCCACTGCAACT-CTAGAGAAATAAGATTCACTTTCTTCAGTCTGCTCTGCTGTAACTTTAGAGA
1 TCCACTGCAACTCCAAG-GAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGA
* * *
102228402 GATAAGGCTGGTGGCTTCAATCTATTCTACTGTAACTTCAGGAAGATAAT-ATCCGCCATAATTT
65 GATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGAT-ATGATCCGCCATAATTT
* *
102228466 GTAGCTTTAATCTGT
129 GTAACTTCAATCTGT
* * * * * *
102228481 TCCACTGTAACTCCAAGGAAATAAGATTCGCTTTATTTAGTCTGCCCCACTGCAACTTTAGGGAG
1 TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
* * * *
102228546 ATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCAT
66 ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATATGATCCGCCAT
102228604 CTTCAATCTA
Statistics
Matches: 223, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
142 3 0.01
143 215 0.96
144 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (143 bp):
TCCACTGCAACTCCAAGGAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAG
ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATATGATCCGCCATAATTTGT
AACTTCAATCTGT
Found at i:102228879 original size:46 final size:45
Alignment explanation
Indices: 102228691--102228885 Score: 212
Period size: 46 Copynumber: 4.2 Consensus size: 45
102228681 AAAATTTGGT
* * *
102228691 TTCTTCCATCCATCCCACTACAACTCAAAGGTATAGGATTTGTATC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
* *
102228737 ATCTTCAATCCATCCCACTGTAACTCAGAGGTATAGGATTTGTATC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
* * *
102228783 TTCTTCAATCTATCCCACTGTAGCTCACG-GGTATAGGATTTGTATA
1 TTCTTCAATC-ATCCCACTGCAACTCA-GAGGTATAGGATTTGTATC
* * * * **
102228829 TTCTTTAATACATCCCACTGCAGCTCAGGGGTACAGGATTTGTGGC
1 TTCTTCAAT-CATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
102228875 TTCTTCAATCA
1 TTCTTCAATCA
102228886 ATTGGTCTCG
Statistics
Matches: 130, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
45 4 0.03
46 124 0.95
47 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34
Consensus pattern (45 bp):
TTCTTCAATCATCCCACTGCAACTCAGAGGTATAGGATTTGTATC
Found at i:102229366 original size:53 final size:52
Alignment explanation
Indices: 102229282--102229384 Score: 134
Period size: 53 Copynumber: 2.0 Consensus size: 52
102229272 GGGAGCATAG
*
102229282 CTCGAAATAAATAAATTATCAAAGATTGCAAATGCAATAAGAAGAAAATTAA
1 CTCGAAATAAATAAATTATCAAAGATAGCAAATGCAATAAGAAGAAAATTAA
* * * * * *
102229334 CTCGAGATGAATAAGTTAATCAAAGATAGCAAATGTAATAATAAGGAAATT
1 CTCGAAATAAATAAATT-ATCAAAGATAGCAAATGCAATAAGAAGAAAATT
102229385 GATTGGGAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
52 14 0.33
53 29 0.67
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (52 bp):
CTCGAAATAAATAAATTATCAAAGATAGCAAATGCAATAAGAAGAAAATTAA
Found at i:102229715 original size:21 final size:21
Alignment explanation
Indices: 102229691--102229737 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
102229681 CCTTTGCGGG
102229691 TTTTTACCTTGGCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
* * **
102229712 TTTTTTCTTTTTCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
102229733 TTTTT
1 TTTTT
102229738 GTGTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTTTACCTTGGCTTTTCCTT
Found at i:102235263 original size:2 final size:2
Alignment explanation
Indices: 102235256--102235284 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102235246 AATGTCCAAT
102235256 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102235285 GCATGTGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102237396 original size:14 final size:15
Alignment explanation
Indices: 102237377--102237433 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
102237367 AATCTTTAAG
102237377 GATATG-CAATCTTA
1 GATATGACAATCTTA
102237391 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
102237408 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
102237427 GATATGA
1 GATATGA
102237434 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:102237418 original size:36 final size:38
Alignment explanation
Indices: 102237377--102237455 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
102237367 AATCTTTAAG
102237377 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
102237413 GATATGCAATCTTAGATATGATATGCAATCTTAAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
102237453 GAT
1 GAT
102237456 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:102237424 original size:19 final size:19
Alignment explanation
Indices: 102237377--102237455 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
102237367 AATCTTTAAG
102237377 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102237396 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102237413 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102237432 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
102237453 GAT
1 GAT
102237456 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Done.