Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 353 of 444
Found at i:102243054 original size:19 final size:18
Alignment explanation
Indices: 102243009--102243043 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
102242999 TTCTATTTCA
*
102243009 AAAACAAAAGGAAAAAAG
1 AAAAGAAAAGGAAAAAAG
102243027 AAAAGAAAAGGAAAAAA
1 AAAAGAAAAGGAAAAAA
102243044 ATATAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAGGAAAAAAG
Found at i:102244110 original size:41 final size:40
Alignment explanation
Indices: 102244057--102244278 Score: 132
Period size: 41 Copynumber: 5.3 Consensus size: 40
102244047 GATCTTATCT
*
102244057 CCCTAAGTAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGAT-GAAGACTCGCCTTAATC
* * * * *
102244098 CCCTAAGCAGTAG-GGTAACAGGTTAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATGAAGA-CT-C-G-CCTTAATC
*
102244140 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCTCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGAT-GAAGACTCGCCTTAATC
* * * * * *
102244182 CCCTAAGCGGTAG-GGTAACAGGTTAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATGAAGA-CT-C-G-CCTTAATC
* *
102244224 TCCCTAAGCAGTAGTGGAGCAGATTGAAGACACACCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGA-TGAAGACTCGCCTTAATC
102244266 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
102244279 GGTAACAGGT
Statistics
Matches: 134, Mismatches: 27, Indels: 40
0.67 0.13 0.20
Matches are distributed among these distances:
39 2 0.01
40 10 0.07
41 55 0.41
42 13 0.10
43 42 0.31
44 10 0.07
45 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (40 bp):
CCCTAAGCAGTAGTGGAGCAGATGAAGACTCGCCTTAATC
Found at i:102244145 original size:84 final size:84
Alignment explanation
Indices: 102244004--102244539 Score: 754
Period size: 84 Copynumber: 6.4 Consensus size: 84
102243994 CAAAATTCAG
*
102244004 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
102244069 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
102244088 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
102244153 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
102244172 CTCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
102244237 GTGGAGCAGATTGAAGACA
66 GTGGAGCAGATCGAAGACT
*
102244256 CACCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
102244316 GCGGAGTAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * * *
102244338 CACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
102244403 GTGGAGTAGATCAAAGA-T
66 GTGGAGCAGATCGAAGACT
* *
102244421 CGCCTTAATCCCCTAAGCAGTAGGATAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
102244481 GCGGAGCAGATCGACGAAAACT
66 GTGGAGCAGAT---CGAAGACT
*
102244503 CGCCTTAA-CTCCCTAAGCAGTAGGGTAATAGGTTAAA
1 CGCCTTAATC-CCCTAAGCAGTAGGGTAACAGGTTAAA
102244540 GTATAGCAGA
Statistics
Matches: 406, Mismatches: 28, Indels: 33
0.87 0.06 0.07
Matches are distributed among these distances:
78 35 0.09
79 39 0.10
81 6 0.01
82 62 0.15
83 29 0.07
84 195 0.48
85 1 0.00
87 39 0.10
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:102244714 original size:132 final size:132
Alignment explanation
Indices: 102244542--102245201 Score: 1027
Period size: 132 Copynumber: 5.0 Consensus size: 132
102244532 AGGTTAAAGT
* * * * * *
102244542 ATAGCAGATCTGAC-CTTCATATGTTTACATCGAAGCAGATCGAATATTTCAGCATGGTATCCCT
1 ATAGCAGATCTGACAC-TCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCT
* * *
102244606 GTGTTTATAGGGAACAAGTTGAAAATAGTAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCG
65 GTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCG
102244671 AAG
130 AAG
*
102244674 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* *
102244739 TGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
102244804 AG
131 AG
* * * *
102244806 ATAGAAGATCTAACACTCTTGTGATTACAGCGAAGCAGATCAAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
102244871 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCGTCCCTGTGTTTATAGGGAACAAATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
102244936 AG
131 AG
* * * * *
102244938 ATAGCAGATCTGACATTCTTGTGATTACAGCGAAACAGATCGAAGATTTCAACATTGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
102245003 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
102245068 AG
131 AG
* * * * * **
102245070 ATAGCAGATCTGACATTCCTATGCTTATAGCAAAGCAGATCGAAGATTTCAGCATGTTATCCCTG
1 ATAGCAGATCTGACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
102245135 TGTTTATAGGGAACAAG-TGAAGATAGCAGATTTGGCATCCATGTGTTTATAGGGAACAAATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
102245199 AG
131 AG
102245201 A
1 A
102245202 AAACAAATCT
Statistics
Matches: 489, Mismatches: 38, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
131 49 0.10
132 439 0.90
133 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (132 bp):
ATAGCAGATCTGACACTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
AG
Found at i:102245217 original size:44 final size:44
Alignment explanation
Indices: 102244600--102245217 Score: 502
Period size: 44 Copynumber: 14.1 Consensus size: 44
102244590 TCAGCATGGT
* * * * *
102244600 ATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGTAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* *
102244644 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGAC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * * * **
102244688 A-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGC
1 ATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATC-TGGC
* * * *
102244732 ATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * **
102244776 ATCCTTGTGTTTATAGGGAACAAATCGAAGATAGAAGATCTAAC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * * * * * **
102244820 A-CTCTTGTGATTACAGCGAAGCAGATCAAAGATTTCAG--CATGGC
1 ATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATC-TGGC
* * *
102244864 ATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* *
102244908 GTCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * * * * * ** *
102244952 ATTCTTGTGATTACAGCGAAACAGATCGAAGATTTCA-A-CATTGC
1 ATCCCTGTGTTTATAG-GGAACAAATCGAAGATAGCAGATC-TGGC
* * *
102244996 ATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
*
102245040 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * * ** * ** **
102245084 ATTCCTATGCTTATAGCAAAGCAGATCGAAGATTTCAG--CATGTT
1 ATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATC-TGGC
* *
102245128 ATCCCTGTGTTTATAGGGAACAAGT-GAAGATAGCAGATTTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
* * * *
102245171 ATCCATGTGTTTATAGGGAACAAATCGAAGAAAACAAATCTGGC
1 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
102245215 ATC
1 ATC
102245218 TCCATTTCGA
Statistics
Matches: 441, Mismatches: 112, Indels: 42
0.74 0.19 0.07
Matches are distributed among these distances:
42 9 0.02
43 70 0.16
44 303 0.69
45 59 0.13
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGC
Found at i:102245813 original size:19 final size:19
Alignment explanation
Indices: 102245789--102245850 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
102245779 AATCTTTAAG
102245789 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102245808 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
102245827 TATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
102245848 GAT
1 GAT
102245851 TTTGTAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 31 0.79
21 8 0.21
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102248361 original size:19 final size:19
Alignment explanation
Indices: 102248317--102248357 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
102248307 AACAATTTAT
102248317 AAATAGATAAATAATAAGTA
1 AAATA-ATAAATAATAAGTA
*
102248337 AAATAATAAATGATAA-TA
1 AAATAATAAATAATAAGTA
102248355 AAA
1 AAA
102248358 ATAAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AAATAATAAATAATAAGTA
Found at i:102248647 original size:5 final size:5
Alignment explanation
Indices: 102248637--102248666 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
102248627 GAGTAATGAT
*
102248637 ATAAA ATAAA ATATA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
102248667 TGTGCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:102248740 original size:3 final size:3
Alignment explanation
Indices: 102248734--102248879 Score: 125
Period size: 3 Copynumber: 49.3 Consensus size: 3
102248724 ACAAAAAAAT
* * * * *
102248734 ATA ATA ATG ATA ATA ATA ATA GTA AT- ACA ATA GTA ATA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
102248781 ATA ACA AAA ACA GTA ATA ATA ATG GTA ATA AAA ATA ATA GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
102248829 ATA ATA AAA ATA ATA ATA ATA ATA A-A ATA GTA ATA ATA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
102248876 ATA A
1 ATA A
102248880 AAAAAATTAA
Statistics
Matches: 109, Mismatches: 32, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
2 3 0.03
3 106 0.97
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:102248894 original size:26 final size:28
Alignment explanation
Indices: 102248837--102248901 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 28
102248827 TAATAATAAA
* *
102248837 AATAATAATAATAATAAAATAGTAATAAT
1 AATATTAATAATAATAAAAAAGTAAT-AT
*
102248866 AATATTAATAATAA-AAAAAATTAAT-T
1 AATATTAATAATAATAAAAAAGTAATAT
*
102248892 AATTTTAATA
1 AATATTAATA
102248902 TCAAAATAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 10 0.31
28 9 0.28
29 13 0.41
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (28 bp):
AATATTAATAATAATAAAAAAGTAATAT
Found at i:102250461 original size:29 final size:29
Alignment explanation
Indices: 102250429--102250485 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
102250419 CTAAAGAATA
* *
102250429 TTTAAAAATTTTAAAAAGTAAATATAAAT
1 TTTAAAAATTCTAAAAAGCAAATATAAAT
*
102250458 TTTAAAAATTCTGAAAAGCAAATATAAA
1 TTTAAAAATTCTAAAAAGCAAATATAAA
102250486 AATATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (29 bp):
TTTAAAAATTCTAAAAAGCAAATATAAAT
Found at i:102257453 original size:18 final size:21
Alignment explanation
Indices: 102257430--102257480 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 21
102257420 AAGCAGCTGA
102257430 AAAAGAAAG-GAA-AG-AAAG
1 AAAAGAAAGAGAAGAGAAAAG
102257448 AAAAGAAAGAGAAGAGAAAAG
1 AAAAGAAAGAGAAGAGAAAAG
*
102257469 AAAA-AGAGAGAA
1 AAAAGAAAGAGAA
102257481 AATTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.31
19 3 0.10
20 9 0.31
21 8 0.28
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (21 bp):
AAAAGAAAGAGAAGAGAAAAG
Found at i:102257460 original size:15 final size:15
Alignment explanation
Indices: 102257440--102257482 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
102257430 AAAAGAAAGG
102257440 AAAGAAAGAAAAGAA
1 AAAGAAAGAAAAGAA
*
102257455 AGAGAAGAGAAAAGAA
1 AAAGAA-AGAAAAGAA
*
102257471 AAAGAGAGAAAA
1 AAAGAAAGAAAA
102257483 TTTTGCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAGAA
Found at i:102257467 original size:16 final size:16
Alignment explanation
Indices: 102257440--102257482 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
102257430 AAAAGAAAGG
102257440 AAAGAA-AGAAAAGAA
1 AAAGAAGAGAAAAGAA
*
102257455 AGAGAAGAGAAAAGAA
1 AAAGAAGAGAAAAGAA
102257471 AAAG-AGAGAAAA
1 AAAGAAGAGAAAA
102257483 TTTTGCATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGAAGAGAAAAGAA
Found at i:102261314 original size:37 final size:37
Alignment explanation
Indices: 102261264--102261348 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
102261254 ACCACGACTC
102261264 GGTGTGATTGGATGGATAGACTCTTATATTCTTAATT
1 GGTGTGATTGGATGGATAGACTCTTATATTCTTAATT
102261301 GGTGTGATTGGATGGATAGACTCTTATATTCTTAATT
1 GGTGTGATTGGATGGATAGACTCTTATATTCTTAATT
102261338 GGTGTGATTGG
1 GGTGTGATTGG
102261349 TTGGGCAGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.22, C:0.07, G:0.28, T:0.42
Consensus pattern (37 bp):
GGTGTGATTGGATGGATAGACTCTTATATTCTTAATT
Found at i:102263498 original size:20 final size:20
Alignment explanation
Indices: 102263446--102263499 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
102263436 GACTTGCTTA
* *
102263446 AAACCAATTTTAACATGATTG
1 AAACC-ATTTTAACTTAATTG
102263467 AAA--ATGTTTAACTTAATTG
1 AAACCAT-TTTAACTTAATTG
102263486 AAACCATTTTAACT
1 AAACCATTTTAACT
102263500 AGATTTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 7 0.25
21 5 0.18
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (20 bp):
AAACCATTTTAACTTAATTG
Found at i:102265039 original size:34 final size:34
Alignment explanation
Indices: 102265001--102265069 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
102264991 TAACATTCTT
102265001 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
*
102265035 TTATTTTATTTTAAGTAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
102265069 T
1 T
102265070 GAAGAAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (34 bp):
TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
Found at i:102270322 original size:97 final size:97
Alignment explanation
Indices: 102270151--102270344 Score: 300
Period size: 97 Copynumber: 2.0 Consensus size: 97
102270141 ATGGTGGCTT
* * *
102270151 AAATTTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCATTTTTGATCTGCTCCACTGCAACT
1 AAATCTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCATCTTCGATCTGCTCCACTGCAACT
*
102270216 TCAAGGAAACGAGATCTACAATTTCAGCCTAC
66 TCAAGGAAACAAGATCTACAATTTCAGCCTAC
* * *
102270248 AAATCTGCTTCACTGCAATTTCAGGAAGAC-TAGATTCGCCGTCTTCGATCTGTTCCACTGCAAC
1 AAATCTGCTTCACTGCAACTTCAGGAAGACAT-GATTCGCCATCTTCGATCTGCTCCACTGCAAC
*
102270312 TTCAAGGAAACAAGATCTACAATTTTAGCCTAC
65 TTCAAGGAAACAAGATCTACAATTTCAGCCTAC
102270345 TCCACTACAA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 1 0.01
97 87 0.99
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (97 bp):
AAATCTGCTTCACTGCAACTTCAGGAAGACATGATTCGCCATCTTCGATCTGCTCCACTGCAACT
TCAAGGAAACAAGATCTACAATTTCAGCCTAC
Found at i:102270557 original size:134 final size:131
Alignment explanation
Indices: 102270248--102270584 Score: 451
Period size: 134 Copynumber: 2.5 Consensus size: 131
102270238 TTCAGCCTAC
* * *
102270248 AAATCTGCTTCACTGCAATTTCAGGAAGACTAGATTCGCCGTCTTCGATCTGTTCCACTGCAACT
1 AAATCTGCTTCACTGCAACTTCAGAAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACT
* * * * *
102270313 TCAAGGAAACAAGATCTACAATTTTAGCCTACTCCACTACAACTTTAGGGGCTAGGTTGGTGGCT
66 TCAGGGAAACAAGATCTACAATTTCAACCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCT
102270378 T
131 T
* * * * * * * *
102270379 AAATTTGCTTCACTACAACTTCA-AGAAGATTGGATTTGCTGTCTTTGATCTGCTCCACTGCAAT
1 AAATCTGCTTCACTGCAACTTCAGA-AAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAAC
* *
102270443 TTCAGGGAAACAAGATCTGTAGAATTTCAACCTACTCCACTACAATTTTAGGGAGATAGGATGGT
65 TTCAGGGAAACAAGATC--TACAATTTCAACCTACTCCACTACAACTTTAGGG-GATAGGATGGT
102270508 GGCTT
127 GGCTT
* *
102270513 AAATCTACTTCACTGCAACTTCAGAAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACT
1 AAATCTGCTTCACTGCAACTTCAGAAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACT
102270578 TCAGGGA
66 TCAGGGA
102270585 GATAGGATGG
Statistics
Matches: 173, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
131 68 0.39
133 30 0.17
134 74 0.43
135 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (131 bp):
AAATCTGCTTCACTGCAACTTCAGAAAGACTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACT
TCAGGGAAACAAGATCTACAATTTCAACCTACTCCACTACAACTTTAGGGGATAGGATGGTGGCT
T
Found at i:102284932 original size:21 final size:21
Alignment explanation
Indices: 102284895--102284934 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102284885 ACTATCATAA
*
102284895 TAATAATTTTTATTTTTGTTG
1 TAATAATTTTTAGTTTTGTTG
*
102284916 TAATAATTTTTGGTTTTGT
1 TAATAATTTTTAGTTTTGT
102284935 ATTTGCACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (21 bp):
TAATAATTTTTAGTTTTGTTG
Found at i:102285319 original size:27 final size:27
Alignment explanation
Indices: 102285265--102285319 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
102285255 ATTATACTAT
*
102285265 AATTATAAAATAATTAAATTGTACTTA
1 AATTATAAAATAATTAAATTGTAATTA
* *
102285292 AATTATTAAAAT-ATTGAATTTTAATTA
1 AATTA-TAAAATAATTAAATTGTAATTA
102285319 A
1 A
102285320 TTTTGATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTATAAAATAATTAAATTGTAATTA
Found at i:102288172 original size:79 final size:81
Alignment explanation
Indices: 102288063--102288245 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
102288053 TACTCGTTCA
* *
102288063 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* * *
102288126 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
**
102288143 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
102288206 TATAGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
102288222 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
102288246 CATCATTGAA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:102288245 original size:40 final size:40
Alignment explanation
Indices: 102288042--102288245 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
102288032 CGGAATTTAA
** *
102288042 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
102288082 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
102288122 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
102288161 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
102288201 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
102288241 CCGGA
1 CCGGA
102288246 CATCATTGAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:102290012 original size:36 final size:36
Alignment explanation
Indices: 102289965--102290036 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
102289955 CACAGAGAAT
*
102289965 GGGTTTAATTGCATAAATTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
*
102290001 GGGTTTAATTGCGTAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
102290037 TCATATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (36 bp):
GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
Found at i:102290046 original size:36 final size:36
Alignment explanation
Indices: 102289970--102290046 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
102289960 AGAATGGGTT
* ** *
102289970 TAATTGCATAAATTCATTTCAATTTCTTAACGGGTT
1 TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
* *
102290006 TAATTGCGTAAAGTCATTTCAATTTCTTAACTCATA
1 TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
102290042 TAATT
1 TAATT
102290047 TATATTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.44
Consensus pattern (36 bp):
TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
Found at i:102290507 original size:6 final size:6
Alignment explanation
Indices: 102290498--102290550 Score: 70
Period size: 6 Copynumber: 8.7 Consensus size: 6
102290488 TGTCAGATAT
* * *
102290498 AGATAC AGATTC AGTTTC AGATTC AGATTC AGATATC AGATTC AGTTTC
1 AGATTC AGATTC AGATTC AGATTC AGATTC AGAT-TC AGATTC AGATTC
102290547 AGAT
1 AGAT
102290551 ATACAGAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
6 35 0.85
7 6 0.15
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (6 bp):
AGATTC
Found at i:102290541 original size:31 final size:30
Alignment explanation
Indices: 102290490--102290550 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
102290480 ATATACACTG
102290490 TCAGATATAGATACAGATTCAGTTTCAGAT
1 TCAGATATAGATACAGATTCAGTTTCAGAT
102290520 TCAGAT-TCAGATATCAGATTCAGTTTCAGAT
1 TCAGATAT-AGATA-CAGATTCAGTTTCAGAT
102290551 ATACAGAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 1 0.03
30 11 0.38
31 17 0.59
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (30 bp):
TCAGATATAGATACAGATTCAGTTTCAGAT
Found at i:102293503 original size:39 final size:39
Alignment explanation
Indices: 102293460--102293569 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
102293450 ACATATTTCT
* * *
102293460 AGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTGTGGACCTTAAGTCCGGATATAATTCC
* *
102293499 AGCACATAGCCTGTAGACCTTAAGTCCTGATATAATTCC
1 AGCACATAGCCTGTGGACCTTAAGTCCGGATATAATTCC
* *
102293538 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGTGGACCTTAAGTCCGGATA
102293570 AACATCACTG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGTGGACCTTAAGTCCGGATATAATTCC
Found at i:102293767 original size:39 final size:39
Alignment explanation
Indices: 102293713--102293826 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
102293703 GCAGACATAT
* * * *
102293713 TTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
102293752 TTCCAGCACATAGCCTGCAGACCTTAAGTCCTGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
102293791 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
102293827 AACATCACTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:102293903 original size:257 final size:257
Alignment explanation
Indices: 102293447--102293968 Score: 999
Period size: 257 Copynumber: 2.0 Consensus size: 257
102293437 GACTTTAGCC
*
102293447 CAGACATATTTCTAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
*
102293512 TAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
102293577 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
* *
102293642 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAG
196 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
102293704 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
102293769 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
102293834 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
102293899 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
*
102293961 CATACATA
1 CAGACATA
102293969 AGAATATATG
Statistics
Matches: 260, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
257 260 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (257 bp):
CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
Found at i:102298160 original size:40 final size:40
Alignment explanation
Indices: 102298081--102298323 Score: 379
Period size: 40 Copynumber: 6.1 Consensus size: 40
102298071 TCGGATTTAA
* *
102298081 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
102298120 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
102298160 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
102298199 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
102298239 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
102298279 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
102298320 CCGG
1 CCGG
102298324 TTATCATCCA
Statistics
Matches: 193, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
38 1 0.01
39 57 0.30
40 107 0.55
41 24 0.12
42 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:102298203 original size:79 final size:80
Alignment explanation
Indices: 102298081--102298323 Score: 379
Period size: 79 Copynumber: 3.0 Consensus size: 80
102298071 TCGGATTTAA
* * *
102298081 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAATT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
102298144 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
102298160 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
102298224 CCTTCGGGACTTAGC
66 CCTTCGGGACTTAGC
*
102298239 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AA
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAA
102298302 ATGCCTTCGGGACTTAGC
63 ATGCCTTCGGGACTTAGC
102298320 CCGG
1 CCGG
102298324 TTATCATCCA
Statistics
Matches: 154, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
78 1 0.01
79 96 0.62
80 29 0.19
81 24 0.16
82 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
CCTTCGGGACTTAGC
Found at i:102298239 original size:119 final size:118
Alignment explanation
Indices: 102298068--102298320 Score: 379
Period size: 119 Copynumber: 2.1 Consensus size: 118
102298058 AAGCCAAGTA
* * *
102298068 CCTTC-GGATTTAACCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGTA
1 CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTA
*
102298132 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-CGCACAAATG
66 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTAACTACGCA-AAATG
*
102298185 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAGCT-ACTCGCAC-AATGCCTTCGGGACATAGCCCGGATATAG
*
102298249 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTA-CGCAAAATG
102298305 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
102298321 CGGTTATCAT
Statistics
Matches: 124, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
117 6 0.05
118 24 0.19
119 69 0.56
120 21 0.17
121 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTACGCAAAATG
Found at i:102307818 original size:29 final size:28
Alignment explanation
Indices: 102307776--102307877 Score: 127
Period size: 29 Copynumber: 3.5 Consensus size: 28
102307766 GTGACAAGAT
102307776 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCAAGCTT-AAATA-TA
102307805 TGGCACTAAGTGTGCGAA-CTTAAATTATA
1 TGGCACTAAGTGTGC-AAGCTTAAA-TATA
* *
102307834 TGGCACTATGTGTGCAAGCTTAAATCAAA
1 TGGCACTAAGTGTGCAAGCTTAAAT-ATA
102307863 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
102307878 GTGATCGATT
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
28 6 0.09
29 56 0.86
30 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAAGCTTAAATATA
Found at i:102315944 original size:29 final size:28
Alignment explanation
Indices: 102315842--102315944 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
102315832 GTGACAAGAT
*
102315842 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
*
102315871 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
102315900 TGGCACTATGTGTGCGAGCTTAAATCAAA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
102315929 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102315945 TGATCGATTA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 4 0.06
29 60 0.92
30 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:102317603 original size:40 final size:40
Alignment explanation
Indices: 102317519--102317736 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
102317509 AAGCCAAGTA
* * * *
102317519 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* * *
102317557 CCTTCGGGACATAGCCCGAATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
102317597 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
102317637 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
102317677 ACTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-AAATG
102317718 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
102317737 TTATCATCCA
Statistics
Matches: 158, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 106 0.67
41 23 0.15
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:102322799 original size:46 final size:46
Alignment explanation
Indices: 102322740--102322998 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
102322730 TCTGATATGG
* * *
102322740 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
* ** *
102322786 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
* * * *
102322832 AATGAATAAGATCATGGTTGAAAGATGCCATGGCAACCTGACATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
**
102322878 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-A
*
102322925 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-A
* * *
102322971 AACGAGTAAAACCATAGTTGAAAGATAC
1 AATGAGTAAGACCATGGTTGAAAGATAC
102322999 TATGACATCA
Statistics
Matches: 192, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 150 0.78
47 42 0.22
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
Found at i:102333936 original size:16 final size:16
Alignment explanation
Indices: 102333915--102333947 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
102333905 TGAATTCTTC
102333915 TTCTTCTACCTACTTA
1 TTCTTCTACCTACTTA
102333931 TTCTTCTACCTACTTA
1 TTCTTCTACCTACTTA
102333947 T
1 T
102333948 GTTGGAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.00, T:0.52
Consensus pattern (16 bp):
TTCTTCTACCTACTTA
Found at i:102334013 original size:14 final size:14
Alignment explanation
Indices: 102333994--102334031 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
102333984 GTTTAGCAAT
* *
102333994 AAAATATTTTTTAA
1 AAAATAATTTCTAA
102334008 AAAATAATTTCTAA
1 AAAATAATTTCTAA
102334022 AAAATAATTT
1 AAAATAATTT
102334032 ATTTTTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAATAATTTCTAA
Found at i:102336249 original size:10 final size:10
Alignment explanation
Indices: 102336234--102336259 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
102336224 TTTTGAAGAG
102336234 AAACAAATCT
1 AAACAAATCT
102336244 AAACAAATCT
1 AAACAAATCT
102336254 AAACAA
1 AAACAA
102336260 GTTAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.19, G:0.00, T:0.15
Consensus pattern (10 bp):
AAACAAATCT
Found at i:102337652 original size:30 final size:30
Alignment explanation
Indices: 102337611--102337675 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
102337601 TTTCGTTTTT
*
102337611 GTCACCCAACTTTAGTAAATTTTTATTTCG
1 GTCACCCAACTTTAATAAATTTTTATTTCG
* *
102337641 GTCACCTAACTTTAATAAATTTTTATTTTG
1 GTCACCCAACTTTAATAAATTTTTATTTCG
102337671 GTCAC
1 GTCAC
102337676 TTATTTTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.45
Consensus pattern (30 bp):
GTCACCCAACTTTAATAAATTTTTATTTCG
Found at i:102342759 original size:46 final size:46
Alignment explanation
Indices: 102342581--102342803 Score: 201
Period size: 46 Copynumber: 4.8 Consensus size: 46
102342571 TTGTGTGCTT
* * *
102342581 GTGTAAGACATGCCTGGGACATGCATCAG-TCACATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCT-ACATGATGAGAGCCA
** * *
102342627 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATGATGAGAGCCA
* * *
102342675 GTGTAAGACATGTCTGGGGCATGCATCAGCCT-CTTGATGTA-AGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-GGCTACATGATG-AGAGCCA
* *
102342721 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGAT--GTGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
*
102342765 GTATAAGACCATGTCTGGGACATGGCATCGGC-ACA-GATG
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATGATG
102342804 CGTGGCGTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 13 0.09
45 20 0.14
46 60 0.41
47 29 0.20
48 22 0.15
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGAGAGCCA
Found at i:102350377 original size:46 final size:46
Alignment explanation
Indices: 102350271--102350399 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 46
102350261 CTACATTATG
* * *
102350271 AGAGACAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATA
1 AGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATA
*
102350319 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCTTGATG-T-
1 AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACA--TTGA-GATA
*
102350366 A-AGCCAGTGTAAGACATGTTTGGGACATGCATCG
1 AGAGCCAGTGTAAGACATGTCTGGGACATGCATCG
102350400 TCTACATGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
46 39 0.54
47 14 0.19
48 18 0.25
49 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATA
Found at i:102350523 original size:47 final size:46
Alignment explanation
Indices: 102350269--102350541 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 46
102350259 AGCTACATTA
* * * *
102350269 TGAGAGACAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-G
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTAACG
* * * *
102350316 ATAAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-ATCT
1 -TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTAACG
* * *
102350360 TGATGTAAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGTCT-ACA
1 TGA-G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTAACG
* ** * ** * *
102350406 TGATGTGTTAGTATAAGACCATGTCTGAAACATTGCATCGGCACGGATACG
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TA-ACG
* *
102350457 TGGGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAACG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TAACG
* *
102350504 TGAGAGCCACTGTAAGACCATGTCTAGGACATGGCATC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
102350542 AACATTATAC
Statistics
Matches: 176, Mismatches: 37, Indels: 25
0.74 0.16 0.11
Matches are distributed among these distances:
43 2 0.01
44 11 0.06
45 12 0.07
46 48 0.27
47 51 0.29
48 18 0.10
49 1 0.01
50 29 0.16
51 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTAACG
Found at i:102352072 original size:49 final size:49
Alignment explanation
Indices: 102352005--102352248 Score: 265
Period size: 49 Copynumber: 4.9 Consensus size: 49
102351995 AGCCAAAGCT
* *
102352005 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTAACCAACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * *
102352054 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
** * *
102352104 ATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATC-ACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * * * **
102352152 GTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 ---ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * *
102352204 ATCTGGTACACATAGTAGCCTGCAGTTAGTACTACACGCGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
102352249 TCACAATAGC
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.01
49 80 0.49
50 44 0.27
51 35 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:102352083 original size:23 final size:23
Alignment explanation
Indices: 102352010--102352085 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 23
102352000 AAGCTATCTG
*
102352010 GTACGCGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
** * ** *
102352033 GTACTACACACGTAACCAACAATCTA
1 GTAC-ACGTA-GTAGCCTGCACT-TA
102352059 GTACACGTAGTAGCCTGCACTTA
1 GTACACGTAGTAGCCTGCACTTA
102352082 GTAC
1 GTAC
102352086 TACACACGTG
Statistics
Matches: 37, Mismatches: 13, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
23 10 0.27
24 10 0.27
25 11 0.30
26 6 0.16
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (23 bp):
GTACACGTAGTAGCCTGCACTTA
Found at i:102356647 original size:90 final size:90
Alignment explanation
Indices: 102356514--102356683 Score: 259
Period size: 90 Copynumber: 1.9 Consensus size: 90
102356504 ACCATTAATG
* * *
102356514 TTGTAGGTTAATATACTACCAATAGGTTGTGAATGCGCAATGGGTTTGCAGATAAAAGCTGCCAG
1 TTGTAGGTTAATACACTACCAATAGGTTGTGAATGCACAATGGGTTTGCAGATAAAAGCTACCAG
102356579 TAAATTTGTGGATAACCACTTGTGT
66 TAAATTTGTGGATAACCACTTGTGT
** * * *
102356604 TTGTAGGTTAATACGTTGCCAATAGGTTGTGAATGTACAATGGGTTTGCAGATAAAAGCTACTAG
1 TTGTAGGTTAATACACTACCAATAGGTTGTGAATGCACAATGGGTTTGCAGATAAAAGCTACCAG
*
102356669 TAAATTTTTGGATAA
66 TAAATTTGTGGATAA
102356684 ATCACCAGTG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 71 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (90 bp):
TTGTAGGTTAATACACTACCAATAGGTTGTGAATGCACAATGGGTTTGCAGATAAAAGCTACCAG
TAAATTTGTGGATAACCACTTGTGT
Found at i:102362092 original size:20 final size:21
Alignment explanation
Indices: 102362056--102362102 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
102362046 TTAAGTGATA
*
102362056 TGGGTTTGTGTTTTGAGGTCT
1 TGGGTTAGTGTTTTGAGGTCT
102362077 TGGGTTAGTG-TTTGAGGTCT
1 TGGGTTAGTGTTTTGAGGTCT
102362097 TGGGTT
1 TGGGTT
102362103 CAAGTCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.06, C:0.04, G:0.40, T:0.49
Consensus pattern (21 bp):
TGGGTTAGTGTTTTGAGGTCT
Found at i:102367143 original size:23 final size:23
Alignment explanation
Indices: 102367113--102367159 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
102367103 GATCATTGCC
102367113 TTTAGTTTAATATATTTTAATCA
1 TTTAGTTTAATATATTTTAATCA
102367136 TTTAGTTTAATATATTTTAATCA
1 TTTAGTTTAATATATTTTAATCA
102367159 T
1 T
102367160 CACTTCTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTAGTTTAATATATTTTAATCA
Found at i:102376142 original size:53 final size:54
Alignment explanation
Indices: 102376026--102376147 Score: 192
Period size: 54 Copynumber: 2.3 Consensus size: 54
102376016 ACTGGCTTAA
* * *
102376026 TTCACATGCCCGTGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
* *
102376080 TTCACACGCCTGTGTGTCAACCAGTGTGCTAGCCC-TGTGACTTACTAACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
102376133 TTCACACGCCCGTGT
1 TTCACACGCCCGTGT
102376148 CCCAGGCTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 30 0.48
54 32 0.52
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (54 bp):
TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
Found at i:102376160 original size:53 final size:54
Alignment explanation
Indices: 102376026--102376151 Score: 164
Period size: 53 Copynumber: 2.4 Consensus size: 54
102376016 ACTGGCTTAA
* ** * *
102376026 TTCACATGCCCGTGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGG
1 TTCACACGCCCGTGTCCCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
* ** *
102376080 TTCACACGCCTGTGTGTCAACCAGTGTGCTAGCCC-TGTGACTTACTAACTTGG
1 TTCACACGCCCGTGTCCCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
102376133 TTCACACGCCCGTGTCCCA
1 TTCACACGCCCGTGTCCCA
102376152 GGCTGTGTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 32 0.50
54 32 0.50
ACGTcount: A:0.17, C:0.33, G:0.22, T:0.28
Consensus pattern (54 bp):
TTCACACGCCCGTGTCCCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGG
Found at i:102384963 original size:30 final size:30
Alignment explanation
Indices: 102384927--102384987 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
102384917 CAAATAACCC
102384927 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
102384957 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
102384987 T
1 T
102384988 CTTCCAAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (30 bp):
TAGATAGTGTGATTTCTCGTGTCGATCCGA
Found at i:102385347 original size:36 final size:36
Alignment explanation
Indices: 102385219--102385640 Score: 382
Period size: 36 Copynumber: 11.4 Consensus size: 36
102385209 GAAAATCTTA
* * * *
102385219 TTTAGTATAATCAGTGGATAATACTCGTTTGAGCAAGC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C
* * * *
102385257 ATTTAGTATAATCAATCGATATTGCTCGTTTGAGAAAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAG-CAC
* * * *
102385295 TATGCAGTAGAATCAATAGATATCGCTTGTTTGAGCAC
1 T-T-TAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* ** * *
102385333 TTTAGTAGAATCAATTTACATTGCTCATTTGAGCAC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * *
102385369 ATTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* *
102385405 TTTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
*
102385441 TTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * * * *
102385478 TTCAGTAGAATCAGTAGACATTACTCATTTCAGCAC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * * * *
102385514 ATTCAATAGGATTAGTAGATATTGCTCG-TTGACCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
102385550 TTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* *
102385587 TTTTAGTAGAATCAGTAGACATTACTCGTTTGAGCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
*
102385624 TTTCAATAGAATCAGTA
1 TTT-AGTAGAATCAGTA
102385641 TTCTTTTCTT
Statistics
Matches: 320, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
35 4 0.01
36 150 0.47
37 102 0.32
38 8 0.03
39 56 0.17
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (36 bp):
TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
Found at i:102385434 original size:109 final size:108
Alignment explanation
Indices: 102385302--102385640 Score: 430
Period size: 109 Copynumber: 3.1 Consensus size: 108
102385292 AACTATGCAG
* * ** * *
102385302 TAGAATCAATAGATATCGCTTGTTTGAGCACTTT-AGTAGAATCAATTTACATTGCTCATTTGAG
1 TAGAATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAG
* * * *
102385366 CACATTCAGTAGGATCAGTAGATATTGCTTGTTGAGCACTTTCAG
65 CAC-TTCAGTAGAATCAGTAGACATTACTTGTTGAGCACTTTCAA
*
102385411 TAGGATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGC
1 TAGAATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGC
* *
102385476 ACTTCAGTAGAATCAGTAGACATTACTCAT-TTCAGCACATTCAA
66 ACTTCAGTAGAATCAGTAGACATTACT--TGTTGAGCACTTTCAA
* * * * *
102385520 TAGGATTAGTAGATATTGCTCGTTGACCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGC
1 TAGAATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGC
* *
102385585 ACTTTTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAA
66 AC-TTCAGTAGAATCAGTAGACATTACTTG-TTGAGCACTTTCAA
102385630 TAGAATCAGTA
1 TAGAATCAGTA
102385641 TTCTTTTCTT
Statistics
Matches: 201, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
108 33 0.16
109 122 0.61
110 46 0.23
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (108 bp):
TAGAATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGC
ACTTCAGTAGAATCAGTAGACATTACTTGTTGAGCACTTTCAA
Found at i:102385477 original size:145 final size:146
Alignment explanation
Indices: 102385274--102385637 Score: 505
Period size: 145 Copynumber: 2.5 Consensus size: 146
102385264 ATAATCAATC
* * * *
102385274 GATATTGCTCGTTTGAGAAACTATGCAGTAGAATCAATAGATATCGCTTGTTTGAGCACTTTAGT
1 GATATTGCTCGTTTGAG-CACT-TTCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTTAGT
** * * * * *
102385339 AGAATCAATTTACATTGCTCATTTGAGCACATTCAGTAGGATCAGTAGATATTGCTTGTTGAGCA
64 AGAATCAATAGACATTACTCATTTCAGCACATTCAATAGGATCAGTAGATATTGCTCGTTGACCA
*
102385404 CTTTCAGTAGGATCAGTA
129 CTTTCAGTAGAATCAGTA
* *
102385422 GATATTGCTTG-TTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAG
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTTAGTAG
* *
102385486 AATCAGTAGACATTACTCATTTCAGCACATTCAATAGGATTAGTAGATATTGCTCGTTGACCACT
66 AATCAATAGACATTACTCATTTCAGCACATTCAATAGGATCAGTAGATATTGCTCGTTGACCACT
102385551 TTCAGTAGAATCAGTA
131 TTCAGTAGAATCAGTA
* * * * *
102385567 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTT-AGTA
102385632 GAATCA
65 GAATCA
102385638 GTATTCTTTT
Statistics
Matches: 191, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
145 121 0.63
146 46 0.24
147 14 0.07
148 10 0.05
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (146 bp):
GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTTAGTAG
AATCAATAGACATTACTCATTTCAGCACATTCAATAGGATCAGTAGATATTGCTCGTTGACCACT
TTCAGTAGAATCAGTA
Found at i:102386644 original size:17 final size:17
Alignment explanation
Indices: 102386611--102386644 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
102386601 AACTTACTTT
*
102386611 TTAACTTTTTTACAAAA
1 TTAACTTTTTAACAAAA
*
102386628 TTAACTTTTTAATAAAA
1 TTAACTTTTTAACAAAA
102386645 ATTATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAACTTTTTAACAAAA
Found at i:102413864 original size:46 final size:47
Alignment explanation
Indices: 102413801--102414166 Score: 523
Period size: 46 Copynumber: 7.9 Consensus size: 47
102413791 TTCGACATAA
* * * * * * *
102413801 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
* ** *** *
102413847 TGCCATGGTATCATTCAACCATGGTCTTATTCA-TTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTT-CATATCAGGT
*
102413894 TGTCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
102413940 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
102413986 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
102414032 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
102414078 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
*
102414124 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCA
102414167 TAGAGCACAC
Statistics
Matches: 299, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
45 3 0.01
46 254 0.85
47 42 0.14
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACAGTTTCATATCAGGT
Found at i:102416320 original size:11 final size:11
Alignment explanation
Indices: 102416304--102416355 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
102416294 TATACTAAAT
102416304 AAATAATAATA
1 AAATAATAATA
*
102416315 AAATAAT-ATT
1 AAATAATAATA
* *
102416325 AAATATCTCATA
1 AAATA-ATAATA
*
102416337 AAATATTAATA
1 AAATAATAATA
102416348 AAATAATA
1 AAATAATA
102416356 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:102417982 original size:46 final size:46
Alignment explanation
Indices: 102417844--102418114 Score: 210
Period size: 47 Copynumber: 5.8 Consensus size: 46
102417834 TGGATAAGGT
* * * *
102417844 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATTTC-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCGTCTCGAG
* * ** * *
102417891 GTCGATGCCATGTCCCAAACATGGTCTTACACTAACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTCG-AG
* *
102417939 GCTGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGAG
* * * * *
102417985 GCCGATACATGTCCCAGACATGTCTTACATTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAG
* * * *
102418031 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCGAG
* *
102418079 GCCAATGCATGCCCCAGACATGTCTTACACTGGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
102418115 ACAAACAAAT
Statistics
Matches: 186, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
45 2 0.01
46 76 0.41
47 78 0.42
48 28 0.15
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAG
Found at i:102418128 original size:47 final size:48
Alignment explanation
Indices: 102418031--102418128 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 48
102418021 TCGTCTCAAT
* * * **
102418031 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCAATGCCATGCCCCAGACATGGTCTTACACTGGCTCACAAAAAATG
102418079 GCCAATG-CATGCCCCAGACAT-GTCTTACACTGGCTCACAAACAAATG
1 GCCAATGCCATGCCCCAGACATGGTCTTACACTGGCTCACAAA-AAATG
102418126 GCC
1 GCC
102418129 CAAACGTCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
46 18 0.41
47 19 0.43
48 7 0.16
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (48 bp):
GCCAATGCCATGCCCCAGACATGGTCTTACACTGGCTCACAAAAAATG
Found at i:102425127 original size:13 final size:13
Alignment explanation
Indices: 102425109--102425136 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
102425099 AGAAGGGTCT
102425109 TTTTCATTCATTA
1 TTTTCATTCATTA
102425122 TTTTCATTCATTA
1 TTTTCATTCATTA
102425135 TT
1 TT
102425137 GCAAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTCATTCATTA
Found at i:102429825 original size:18 final size:18
Alignment explanation
Indices: 102429802--102429837 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
102429792 TTTATGCTTA
102429802 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
102429820 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
102429838 GTGTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
TAGTAAATGATTTTTTAT
Found at i:102430309 original size:14 final size:14
Alignment explanation
Indices: 102430290--102430324 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
102430280 GTGTATATGA
102430290 TGGTAATGTTGACT
1 TGGTAATGTTGACT
102430304 TGGTAATGTTGACT
1 TGGTAATGTTGACT
*
102430318 TTGTAAT
1 TGGTAAT
102430325 ATATGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.46
Consensus pattern (14 bp):
TGGTAATGTTGACT
Found at i:102435430 original size:25 final size:25
Alignment explanation
Indices: 102435400--102435450 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
102435390 ATAATATGTT
*
102435400 TAATTTTGAATTGTGTTGTAATTCA
1 TAATTTTGAATTATGTTGTAATTCA
102435425 TAATTTTGAATTATGTTGTAATTCA
1 TAATTTTGAATTATGTTGTAATTCA
102435450 T
1 T
102435451 GTGTTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (25 bp):
TAATTTTGAATTATGTTGTAATTCA
Found at i:102435532 original size:21 final size:21
Alignment explanation
Indices: 102435483--102435535 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
102435473 ATTAAATGAC
*
102435483 ATTGGAAAGTTTTTTAGTATA
1 ATTGGAAGGTTTTTTAGTATA
102435504 ATTGGAAGGTTTTTTAGTATA
1 ATTGGAAGGTTTTTTAGTATA
102435525 ATTGGAAGGTT
1 ATTGGAAGGTT
102435536 ATAGGATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (21 bp):
ATTGGAAGGTTTTTTAGTATA
Found at i:102448594 original size:33 final size:33
Alignment explanation
Indices: 102448552--102448617 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
102448542 GGTTTCGAGC
102448552 CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
1 CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
*
102448585 CCCTGAATCGACTCTTGTTGATTCTTAAGTGCT
1 CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
102448618 GTCTCGATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (33 bp):
CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
Found at i:102451658 original size:40 final size:39
Alignment explanation
Indices: 102451567--102451677 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
102451557 ATAACCATGT
* *
102451567 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
102451607 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
102451647 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
102451678 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:102451701 original size:80 final size:80
Alignment explanation
Indices: 102451567--102451716 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
102451557 ATAACCATGT
* * *
102451567 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGGGCTTAGCC
102451632 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
102451647 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTATCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TACCTTCGGGGCTTAG
102451710 CCCGGAT
64 CCCGGAT
102451717 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:102459582 original size:40 final size:39
Alignment explanation
Indices: 102459537--102459666 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
102459527 CGGAATATAA
102459537 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
102459577 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
102459617 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
102459657 CCGGATATAA
1 CCGGATATAA
102459667 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102459681 original size:40 final size:40
Alignment explanation
Indices: 102459553--102459703 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
102459543 ATAACCATGT
* * *
102459553 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
102459593 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102459633 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102459673 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
102459704 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:102459687 original size:80 final size:79
Alignment explanation
Indices: 102459553--102459701 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
102459543 ATAACCATGT
*
102459553 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
102459618 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
102459633 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
102459696 CCGGAT
64 CCGGAT
102459702 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:102464068 original size:44 final size:44
Alignment explanation
Indices: 102464005--102464093 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
102463995 TCATTTGAGA
* *
102464005 AAAAATTAAAAATATTTGTTTTACACATACTCTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
* *
102464049 AAAAATTAAAAATATTTGTTTCGCACATGCACTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
102464093 A
1 A
102464094 CCAAAGTTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (44 bp):
AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
Found at i:102466851 original size:24 final size:24
Alignment explanation
Indices: 102466823--102466874 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
102466813 CTATTCCTCA
102466823 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
102466847 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
102466871 AGTT
1 AGTT
102466875 GTTTCCTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27
Consensus pattern (24 bp):
AGTTAGTACAAAAACTTAGAGTAG
Found at i:102468299 original size:20 final size:20
Alignment explanation
Indices: 102468274--102468314 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
102468264 GTTTTATAGT
102468274 ATTTTTATATGTTTTTATTTC
1 ATTTTTATA-GTTTTTATTTC
*
102468295 ATTTTTTTAGTTTTTATTTC
1 ATTTTTATAGTTTTTATTTC
102468315 TTTGTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (20 bp):
ATTTTTATAGTTTTTATTTC
Found at i:102474503 original size:6 final size:6
Alignment explanation
Indices: 102474487--102474515 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
102474477 ATTCCAAGGG
102474487 ATTAG- ATTAGA ATTAGA ATTAGA ATTAGA
1 ATTAGA ATTAGA ATTAGA ATTAGA ATTAGA
102474516 TTTTAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATTAGA
Found at i:102479810 original size:48 final size:47
Alignment explanation
Indices: 102479739--102479875 Score: 145
Period size: 47 Copynumber: 2.9 Consensus size: 47
102479729 AAAGTGGAAG
*
102479739 TTATTGGCAGTTTATCTACGATTTTGGTGACACTGTTCACAATATTGA
1 TTATTGGCAGTTTATCT-TGATTTTGGTGACACTGTTCACAATATTGA
** * * * * *
102479787 TTATTGGCAACTTATCTGTGATTTTGGTGGC-TTGTCCACTATATTTA
1 TTATTGGCAGTTTATCT-TGATTTTGGTGACACTGTTCACAATATTGA
102479834 TTATTGGCAGTTTAT-TTGCATTATT-GTGACACTGTTCACAAT
1 TTATTGGCAGTTTATCTTG-ATT-TTGGTGACACTGTTCACAAT
102479876 TTGGTGTGTT
Statistics
Matches: 71, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.03
46 8 0.11
47 35 0.49
48 26 0.37
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.45
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTTGATTTTGGTGACACTGTTCACAATATTGA
Found at i:102483363 original size:40 final size:40
Alignment explanation
Indices: 102483319--102483504 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
102483309 GCTACTCGTT
* * *
102483319 CAAATTCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
102483359 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
102483399 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
102483439 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
102483480 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
102483505 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:102489027 original size:26 final size:26
Alignment explanation
Indices: 102488998--102489051 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
102488988 CCACACTTAC
* *
102488998 TGTTATTGGTAGCTACGCTGCGCTAT
1 TGTTATTGGCAGCTACGCTGCGATAT
**
102489024 TGTTATTGGCAGCTTTGCTGCGATAT
1 TGTTATTGGCAGCTACGCTGCGATAT
102489050 TG
1 TG
102489052 GTGTGCTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.28, T:0.41
Consensus pattern (26 bp):
TGTTATTGGCAGCTACGCTGCGATAT
Found at i:102493427 original size:27 final size:28
Alignment explanation
Indices: 102493383--102493517 Score: 103
Period size: 29 Copynumber: 4.8 Consensus size: 28
102493373 TACATACATG
*
102493383 CATATGGCCCA-CTTGGCCC-ATCTCATT
1 CATATGGCCCATC-AGGCCCAATCTCATT
*
102493410 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
* * *
102493439 CATATGGGCCATCAGGCCCAATTTATATT
1 CATATGGCCCATCAGGCCCAATCT-CATT
* * * * *
102493468 CATATGGCCTATTAGGTCCAAATCACCTT
1 CATATGGCCCATCAGG-CCCAATCTCATT
* * *
102493497 TATATGGCCCGTTAGGCCCAA
1 CATATGGCCCATCAGGCCCAA
102493518 ATCACCTTAT
Statistics
Matches: 85, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
27 16 0.19
28 7 0.08
29 57 0.67
30 5 0.06
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:102493450 original size:29 final size:29
Alignment explanation
Indices: 102493406--102493522 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
102493396 TGGCCCATCT
102493406 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* *
102493435 CATTCATATGGGCCATCAGGCCCAATTTA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
102493464 TATTCATATGGCCTATTAGGTCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
102493493 CCTTTATATGGCCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
102493522 C
1 C
102493523 CTTATATTCA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:102493502 original size:58 final size:58
Alignment explanation
Indices: 102493407--102493517 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
102493397 GGCCCATCTC
* *
102493407 ATTCATATGGCCCATCAGGCCCAATTCACATTCATATGGGCCATCAGGCCCAATTTAT
1 ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTTAT
* * * * * * *
102493465 ATTCATATGGCCTATTAGGTCCAAATCACCTTTATATGGCCCGTTAGGCCCAA
1 ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
102493518 ATCACCTTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (58 bp):
ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTTAT
Found at i:102503180 original size:199 final size:199
Alignment explanation
Indices: 102502834--102503202 Score: 555
Period size: 199 Copynumber: 1.9 Consensus size: 199
102502824 TTTTTGACCC
* * * *
102502834 ACATGGCCTGGCCAAACGGGTGTGTGGAGCACACGACCTAGCCACACCGGTGTGTGGGATCTCAC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTAGCCACAACGGCGTGTGGGATCTCAC
102502899 ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
66 ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
* * * *
102502964 CCTGGACACATGGGCATGTCC-TAGGCCGTGTGAAACTTGGAGCTAATTTTTTTTCAAAGTCACA
131 CCTAGACACACGGGCATGTCCAT-GGCCATGTGAAAATTGGAGCTAATTTTTTTTCAAAGTCACA
102503028 GAGTT
195 GAGTT
* * *
102503033 ACATGGCCTGACTATACGGGTGTGTGAAGCACAC-AGCCT-GACCACAAGGGCGTGTGGGATCTC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGA-CCTAG-CCACAACGGCGTGTGGGATCTC
* * * *
102503096 ACATGGGCGTGGGAGAAGCGAAGGAAAACACACACGGCTTGGTGACATGGCCATGTGACCCACAT
64 ACATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACAC
102503161 GGCCTAGACACACGGGCATGTCCATGGCCATGTGAAAATTGG
129 GGCCTAGACACACGGGCATGTCCATGGCCATGTGAAAATTGG
102503203 GTTAATCACC
Statistics
Matches: 152, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
198 2 0.01
199 149 0.98
200 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.18
Consensus pattern (199 bp):
ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTAGCCACAACGGCGTGTGGGATCTCAC
ATGGGCGTGGGAGAAGCGAAGGAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGG
CCTAGACACACGGGCATGTCCATGGCCATGTGAAAATTGGAGCTAATTTTTTTTCAAAGTCACAG
AGTT
Found at i:102503240 original size:15 final size:15
Alignment explanation
Indices: 102503217--102503441 Score: 88
Period size: 15 Copynumber: 14.6 Consensus size: 15
102503207 ATCACCCCAA
102503217 TTTTATTTTATTT-T
1 TTTTATTTTATTTAT
* *
102503231 ATTTA-TTT-TTAAT
1 TTTTATTTTATTTAT
* *
102503244 TGTTATATTATTTAT
1 TTTTATTTTATTTAT
* *
102503259 TTTTATTTTACTAAT
1 TTTTATTTTATTTAT
* * **
102503274 TAATTAATAAATTTAT
1 T-TTTATTTTATTTAT
* * *
102503290 TATTCTTATACTTATAT
1 TTTTATTTTA-TT-TAT
*
102503307 TTTTAATTT-TTTAT
1 TTTTATTTTATTTAT
*
102503321 ATTTTAATTT-TTTAT
1 -TTTTATTTTATTTAT
* *
102503336 ATATA-TTTA-TTAT
1 TTTTATTTTATTTAT
*
102503349 TTATTATTTTTATATAT
1 TT-TTA-TTTTATTTAT
102503366 TTTTATTATT-TTTAT
1 TTTTATT-TTATTTAT
102503381 TTTTATTTTTATTTTTAT
1 TTTTA-TTTTA--TTTAT
102503399 TTTTATTTTTATTTTTAT
1 TTTTA-TTTTA--TTTAT
*
102503417 TTTTATTTTTTTCTAT
1 TTTTATTTTATT-TAT
*
102503433 TTCTATTTT
1 TTTTATTTT
102503442 TTTCTTTTCT
Statistics
Matches: 162, Mismatches: 31, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
12 2 0.01
13 15 0.09
14 14 0.09
15 53 0.33
16 33 0.20
17 17 0.10
18 28 0.17
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTTATTTAT
Found at i:102503254 original size:22 final size:21
Alignment explanation
Indices: 102503217--102503426 Score: 101
Period size: 18 Copynumber: 10.2 Consensus size: 21
102503207 ATCACCCCAA
*
102503217 TTTT-ATTTTATTTTATTTAT
1 TTTTAATTTTATATTATTTAT
102503237 TTTTAATTGTTATATTATTTAT
1 TTTTAATT-TTATATTATTTAT
*
102503259 TTTT-ATTTTACTA--ATTAAT
1 TTTTAATTTTA-TATTATTTAT
** * * *
102503278 TAATAAATTTATTATTCTTATAC
1 TTTTAATTTTA-TATTATT-TAT
* * *
102503301 TTATATTTTTA-ATTTTTTAT
1 TTTTAATTTTATATTATTTAT
102503321 ATTTTAATTTTTTATATATATTTAT
1 -TTTTAA--TTTTATAT-TATTTAT
*
102503346 TATTT-ATTATT-T-TTATATAT
1 T-TTTAATT-TTATATTATTTAT
102503366 TTTTATTATTTT-TATT-TTTAT
1 TTTTA--ATTTTATATTATTTAT
102503387 TTTT-ATTTT-TATT-TTTAT
1 TTTTAATTTTATATTATTTAT
102503405 TTTT-ATTTT-TATT-TTTAT
1 TTTTAATTTTATATTATTTAT
102503423 TTTT
1 TTTT
102503427 TTCTATTTCT
Statistics
Matches: 153, Mismatches: 19, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
18 36 0.24
19 10 0.07
20 23 0.15
21 29 0.19
22 26 0.17
23 16 0.10
24 4 0.03
25 9 0.06
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTAATTTTATATTATTTAT
Found at i:102503367 original size:24 final size:23
Alignment explanation
Indices: 102503330--102503449 Score: 92
Period size: 24 Copynumber: 5.2 Consensus size: 23
102503320 TATTTTAATT
102503330 TTTTATATATATTTATTATTTATTA
1 TTTT-TATATATTTATTATTT-TTA
102503355 TTTTTATATATTTTTATTATTTTTA
1 TTTTTATATA--TTTATTATTTTTA
*
102503380 TTTTTATTTTTATTT-TTATTTTTA
1 TTTTTA--TATATTTATTATTTTTA
102503404 TTTTTAT-T-TTTATT-TTTATT-
1 TTTTTATATATTTATTATTT-TTA
* *
102503424 TTTTTCTAT-TTCTATT-TTTTTC
1 TTTTTATATATT-TATTATTTTTA
102503446 TTTT
1 TTTT
102503450 CTCTTTCGTA
Statistics
Matches: 84, Mismatches: 2, Indels: 21
0.79 0.02 0.20
Matches are distributed among these distances:
20 12 0.14
21 10 0.12
22 12 0.14
24 21 0.25
25 16 0.19
26 10 0.12
27 3 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTATATATTTATTATTTTTA
Found at i:102503441 original size:21 final size:21
Alignment explanation
Indices: 102503417--102503468 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
102503407 TTATTTTTAT
102503417 TTTTATTTTTTTCTATTTC-TA
1 TTTT-TTTTTTTCTATTTCGTA
*
102503438 TTTTTTTCTTTTCTCTTTCGTA
1 TTTTTTT-TTTTCTATTTCGTA
102503460 TTTTTTTTT
1 TTTTTTTTT
102503469 ACTATTATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 16 0.57
22 9 0.32
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.79
Consensus pattern (21 bp):
TTTTTTTTTTTCTATTTCGTA
Found at i:102503444 original size:18 final size:18
Alignment explanation
Indices: 102503329--102503442 Score: 99
Period size: 18 Copynumber: 6.3 Consensus size: 18
102503319 ATATTTTAAT
* *
102503329 TTTTTATATATATTTATTA
1 TTTTTATTTCTATTT-TTA
*
102503348 TTTATTATTTTTATATATTT-
1 TTT-TTATTTCTAT-T-TTTA
* *
102503368 TTATTATTTTTATTTTTA
1 TTTTTATTTCTATTTTTA
*
102503386 TTTTTATTTTTATTTTTA
1 TTTTTATTTCTATTTTTA
*
102503404 TTTTTATTTTTATTTTTA
1 TTTTTATTTCTATTTTTA
*
102503422 -TTTT-TTTCTATTTCTA
1 TTTTTATTTCTATTTTTA
102503438 TTTTT
1 TTTTT
102503443 TTCTTTTCTC
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
16 10 0.12
17 11 0.13
18 36 0.43
19 13 0.15
20 10 0.12
21 3 0.04
22 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTCTATTTTTA
Found at i:102503449 original size:6 final size:6
Alignment explanation
Indices: 102503304--102503426 Score: 131
Period size: 6 Copynumber: 19.2 Consensus size: 6
102503294 CTTATACTTA
* *
102503304 TATTTT TAATTTTT TATATTT TAATTTTT TATATA TATTTAT TATTTAT
1 TATTTT T-A-TTTT TAT-TTT T-A-TTTT TATTTT TATTT-T TATTT-T
*
102503353 TATTTT TATATATT T-TTAT TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TAT-T-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
102503402 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
102503427 TTCTATTTCT
Statistics
Matches: 102, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
5 2 0.02
6 65 0.64
7 21 0.21
8 13 0.13
9 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:102503450 original size:15 final size:15
Alignment explanation
Indices: 102503410--102503451 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
102503400 TTTATTTTTA
*
102503410 TTTTTATTTT-TATT
1 TTTTTCTTTTCTATT
102503424 TTTTTCTATTTCTATT
1 TTTTTCT-TTTCTATT
102503440 TTTTTCTTTTCT
1 TTTTTCTTTTCT
102503452 CTTTCGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 6 0.24
15 8 0.32
16 11 0.44
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTCTTTTCTATT
Found at i:102503524 original size:3 final size:3
Alignment explanation
Indices: 102503516--102503574 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
102503506 ATCATTGAGT
102503516 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102503564 TTA TTA TTA TT
1 TTA TTA TTA TT
102503575 TATCTTTCTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:102505397 original size:29 final size:28
Alignment explanation
Indices: 102505357--102505459 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
102505347 GTGACGAGAT
* *
102505357 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * * *
102505386 CGGCACTAAGTGTGTGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* *
102505415 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
102505444 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102505460 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.05
29 55 0.93
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:102511714 original size:30 final size:30
Alignment explanation
Indices: 102511678--102511738 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
102511668 TAGTTTTTAG
* *
102511678 GATGCACACAGGTAGGCCACACGCCTATGT
1 GATGCACACAGGCAGGCCACACGCCCATGT
*
102511708 GATGCACACGGGCAGGCCACACGCCCATGT
1 GATGCACACAGGCAGGCCACACGCCCATGT
102511738 G
1 G
102511739 CTAGCCCGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.30, T:0.13
Consensus pattern (30 bp):
GATGCACACAGGCAGGCCACACGCCCATGT
Found at i:102521777 original size:22 final size:23
Alignment explanation
Indices: 102521723--102521811 Score: 103
Period size: 23 Copynumber: 3.9 Consensus size: 23
102521713 AGCTTACTAT
*
102521723 TTTCAACTC-ATTGGAGCTTACCG
1 TTTCAACTCGA-TAGAGCTTACCG
*
102521746 TTTCAACTCG-TATGAGCTTACTG
1 TTTCAACTCGATA-GAGCTTACCG
*
102521769 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAACTCGATAGAGCTTACCG
*
102521791 TTTCAACTCAATAGAGCTTAC
1 TTTCAACTCGATAGAGCTTAC
102521812 TGTTCATCAG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
22 18 0.32
23 38 0.68
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (23 bp):
TTTCAACTCGATAGAGCTTACCG
Found at i:102522832 original size:32 final size:30
Alignment explanation
Indices: 102522772--102522839 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
102522762 GCACGACCTA
*
102522772 GACACACGAGCATGTCTACTAGCCGTGTGT
1 GACACACAAGCATGTCTACTAGCCGTGTGT
* *
102522802 GACACACAAGCATGTCTACTGGCTGTGTGT
1 GACACACAAGCATGTCTACTAGCCGTGTGT
102522832 GACACACA
1 GACACACA
102522840 GGCTGGCACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (30 bp):
GACACACAAGCATGTCTACTAGCCGTGTGT
Found at i:102526350 original size:42 final size:42
Alignment explanation
Indices: 102526287--102526374 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
102526277 CTATTTATAG
* * * *
102526287 GAGT-TCTCATGTCTCTTCATAGGGATATAACTATCCAATTA
1 GAGTCTCTCATCTCTCTCCATAGGAATATAACTACCCAATTA
*
102526328 GAGTCTCTCATCTCTCTCCATAGGAATATAACTACCCAATTG
1 GAGTCTCTCATCTCTCTCCATAGGAATATAACTACCCAATTA
102526370 GAGTC
1 GAGTC
102526375 ATATCTTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 4 0.10
42 37 0.90
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (42 bp):
GAGTCTCTCATCTCTCTCCATAGGAATATAACTACCCAATTA
Found at i:102528531 original size:106 final size:106
Alignment explanation
Indices: 102528346--102528553 Score: 308
Period size: 106 Copynumber: 2.0 Consensus size: 106
102528336 AATCAATATA
* * * *
102528346 AGCCAATACATTTGGCTAATCATAACAACATCTATCATAAAAACTAAGTCCCTATACATGCCACT
1 AGCCAATACATTTCGCAAATCACAACAACATCTATCATAAAAAATAAGTCCCTATACATGCCACT
*
102528411 CACTTGAAGGTGCTTAATACAAATATGTCAATACTCCGAAG
66 CACTTGAAGGTGCTTAATACAAATATATCAATACTCCGAAG
* *** *
102528452 AGCCAATACATTTCGCAAATCACAACAACATCTATCCTAAAAAATAAGTTGTTATACATGTCACT
1 AGCCAATACATTTCGCAAATCACAACAACATCTATCATAAAAAATAAGTCCCTATACATGCCACT
* *
102528517 CACTTGAAGGTGCTTAATACACATATATTAATACTCC
66 CACTTGAAGGTGCTTAATACAAATATATCAATACTCC
102528554 AAAAGTGATG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
106 90 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (106 bp):
AGCCAATACATTTCGCAAATCACAACAACATCTATCATAAAAAATAAGTCCCTATACATGCCACT
CACTTGAAGGTGCTTAATACAAATATATCAATACTCCGAAG
Found at i:102532296 original size:35 final size:35
Alignment explanation
Indices: 102532257--102532329 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
102532247 TATGTGATAT
102532257 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
102532292 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
102532327 ATA
1 ATA
102532330 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:102533470 original size:49 final size:49
Alignment explanation
Indices: 102533395--102533624 Score: 229
Period size: 49 Copynumber: 4.8 Consensus size: 49
102533385 TGGCTAGCAC
* * * *
102533395 ATCAAAGTCAATGTCATGTCCCAGACAGGTCTTACACTAACTTTCATAT
1 ATCAAGGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATAT
* * * * * *
102533444 ATCAAGGCCGATGCCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCT
1 ATCAAGGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATAT
102533493 ATC-AGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGT-ATAT
1 ATCAAG-GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-TCATAT
* * * *
102533542 CTCAAGGTCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GT
1 ATCAAGGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATAT
* * * * *
102533588 CTCAATGCCGATG-CATGTCCCAAACATGTCTTACACT
1 ATCAAGGTCGATGCCATGTCCCAGACAGGTCTTACACT
102533625 GGCTCTGTCA
Statistics
Matches: 154, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
46 35 0.23
47 1 0.01
48 29 0.19
49 86 0.56
50 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
ATCAAGGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATAT
Found at i:102533521 original size:98 final size:96
Alignment explanation
Indices: 102533353--102533624 Score: 309
Period size: 98 Copynumber: 2.8 Consensus size: 96
102533343 GGGATAAGAT
* * ** * *
102533353 GCCGACGCCATGTCCTAAACATGGTCTTACACTGGCTAGCA-CATCAAAGTCAATGTCATGTCCC
1 GCCGATGCCATGTCCTAGACA-GGTCTTACACTGGCTCTCATCATCAATGTCGATG-CATGTCCC
102533417 AGACAGGTCTTACACTAACTT-TCATATATCAAG
64 AGACAGGTCTTACACTAACTTGT-ATATATCAAG
* *
102533450 GCCGATGCCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATC-ATCAATGTCGATG-CATGTCCC
* *
102533515 AGACAGGTCTTACACTAGCTTGTATATCTCAAG
64 AGACAGGTCTTACACTAACTTGTATATATCAAG
* * * * * * *
102533548 GTCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTC-TCAATGCCGATGCATGTCCCAA
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCATCAATGTCGATGCATGTCCCAG
*
102533611 ACATGTCTTACACT
66 ACAGGTCTTACACT
102533625 GGCTCTGTCA
Statistics
Matches: 151, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
94 22 0.15
95 10 0.07
96 17 0.11
97 48 0.32
98 53 0.35
99 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCATCAATGTCGATGCATGTCCCAG
ACAGGTCTTACACTAACTTGTATATATCAAG
Found at i:102534554 original size:43 final size:43
Alignment explanation
Indices: 102534443--102534537 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 43
102534433 ATGTATTGGC
** *
102534443 AGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTA
1 AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
*
102534486 AGTGTGTGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
1 AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
102534529 AGTGTGCGA
1 AGTGTGCGA
102534538 GTTCGTTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
Found at i:102537005 original size:20 final size:20
Alignment explanation
Indices: 102536980--102537018 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
102536970 AAAATTTCAA
102536980 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
102537000 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
102537019 AATAGCCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:102540788 original size:15 final size:15
Alignment explanation
Indices: 102540770--102540812 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
102540760 AATAGTTAAT
102540770 AATAAAATGATATAA
1 AATAAAATGATATAA
102540785 AATAAAAT-A-AT-A
1 AATAAAATGATATAA
102540797 AATAAAAATGATATAA
1 AAT-AAAATGATATAA
102540813 TATATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.17
13 7 0.29
14 2 0.08
15 10 0.42
16 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (15 bp):
AATAAAATGATATAA
Found at i:102540811 original size:28 final size:26
Alignment explanation
Indices: 102540766--102540823 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 26
102540756 AATAAATAGT
102540766 TAATAATAAAATGATATAAAATAAAA
1 TAATAATAAAATGATATAAAATAAAA
* *
102540792 TAATAAATAAAAATGATATAATATATAA
1 TAAT-AAT-AAAATGATATAAAATAAAA
102540820 TAAT
1 TAAT
102540824 TTACATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.14
27 3 0.11
28 21 0.75
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (26 bp):
TAATAATAAAATGATATAAAATAAAA
Found at i:102545746 original size:11 final size:11
Alignment explanation
Indices: 102545730--102545754 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
102545720 TTTCTCCTCT
102545730 AAGGCACGTGA
1 AAGGCACGTGA
102545741 AAGGCACGTGA
1 AAGGCACGTGA
102545752 AAG
1 AAG
102545755 TCGACCCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.36, T:0.08
Consensus pattern (11 bp):
AAGGCACGTGA
Found at i:102550207 original size:22 final size:22
Alignment explanation
Indices: 102550182--102550227 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
102550172 TTAGTTCCAC
102550182 TTCATTAGATTTATAAGCTTTA
1 TTCATTAGATTTATAAGCTTTA
102550204 TTCATTAGATTTATAAGCTTTA
1 TTCATTAGATTTATAAGCTTTA
102550226 TT
1 TT
102550228 GTAATCACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (22 bp):
TTCATTAGATTTATAAGCTTTA
Found at i:102552254 original size:14 final size:14
Alignment explanation
Indices: 102552235--102552262 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102552225 AAATAAATAC
102552235 TTCAATCCTATAGT
1 TTCAATCCTATAGT
102552249 TTCAATCCTATAGT
1 TTCAATCCTATAGT
102552263 ATAGTGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
TTCAATCCTATAGT
Found at i:102555346 original size:21 final size:22
Alignment explanation
Indices: 102555308--102555351 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
102555298 TACTTTTGTA
* *
102555308 ATATCTTATTGTATTTTATATT
1 ATATATTATTGTAATTTATATT
102555330 ATATATTA-TGTAATTTATATT
1 ATATATTATTGTAATTTATATT
102555351 A
1 A
102555352 AATAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATATTATTGTAATTTATATT
Found at i:102556714 original size:152 final size:153
Alignment explanation
Indices: 102556428--102556724 Score: 551
Period size: 152 Copynumber: 1.9 Consensus size: 153
102556418 AACAATTCCG
*
102556428 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTCTTG
102556493 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
102556558 AAAGAGGAAATATCTCTTTCTTA
131 AAAGAGGAAATATCTCTTTCTTA
102556581 TGATA-TGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTCTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTCTTG
* * *
102556645 TATCGTCCATAATAGACAAACTTCCTCCATCTTGAAAAGACTTTAAAAGAAGTCTAAAACATAAT
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
102556710 AAAGAGGAAATATCT
131 AAAGAGGAAATATCT
102556725 TTTGAGGCTT
Statistics
Matches: 140, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
152 135 0.96
153 5 0.04
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (153 bp):
TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTCTTG
TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
AAAGAGGAAATATCTCTTTCTTA
Found at i:102563492 original size:43 final size:43
Alignment explanation
Indices: 102563340--102563504 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
102563330 ACATTATGTT
* *
102563340 ATCGAGATGTGATTACATGTAAAACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * *
102563383 ATTG-TATTGAGATTACATGTAAGACCATGTTTGGGACATTGGC
1 ATCGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* ** * * * * *
102563426 ATCGTTAAT-CAATTTCGTCTAAGACCTTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* *
102563469 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGA
102563505 TATGGTATTG
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
42 3 0.03
43 89 0.94
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:102566005 original size:17 final size:18
Alignment explanation
Indices: 102565983--102566018 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
102565973 TGATATCTGT
*
102565983 TAATATGCTT-ATGTATG
1 TAATATGATTAATGTATG
102566000 TAATATGATTAATGTATG
1 TAATATGATTAATGTATG
102566018 T
1 T
102566019 GAATTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (18 bp):
TAATATGATTAATGTATG
Found at i:102568775 original size:21 final size:19
Alignment explanation
Indices: 102568751--102568814 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 19
102568741 AACTGTTCAA
102568751 CTCACACTGAGCTTTCATAAG
1 CTCACACT-AGCTTTCA-AAG
102568772 CTCACACTA-CTGTTC-AA-
1 CTCACACTAGCT-TTCAAAG
102568789 CTCACACTAAGCTTTCACAAG
1 CTCACACT-AGCTTTCA-AAG
102568810 CTCAC
1 CTCAC
102568815 CCCCCATAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.22
18 6 0.16
19 4 0.11
20 6 0.16
21 13 0.35
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.27
Consensus pattern (19 bp):
CTCACACTAGCTTTCAAAG
Found at i:102568793 original size:38 final size:38
Alignment explanation
Indices: 102568742--102568814 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
102568732 CGTTTAAATA
* *
102568742 ACTGTTCAACTCACACTGAGCTTTCATAAGCTCACACT
1 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCACACT
102568780 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCAC
1 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCAC
102568815 CCCCCATAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.30, C:0.33, G:0.10, T:0.27
Consensus pattern (38 bp):
ACTGTTCAACTCACACTAAGCTTTCACAAGCTCACACT
Found at i:102568794 original size:17 final size:17
Alignment explanation
Indices: 102568742--102568797 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
102568732 CGTTTAAATA
102568742 ACTGTTCAACTCACACT
1 ACTGTTCAACTCACACT
102568759 GAGCT-TTCATAAGCTCACACT
1 -A-CTGTTC--AA-CTCACACT
102568780 ACTGTTCAACTCACACT
1 ACTGTTCAACTCACACT
102568797 A
1 A
102568798 AGCTTTCACA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
17 9 0.27
18 6 0.18
19 4 0.12
20 6 0.18
21 8 0.24
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (17 bp):
ACTGTTCAACTCACACT
Found at i:102569871 original size:18 final size:18
Alignment explanation
Indices: 102569838--102569872 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102569828 CTAAAGCTGT
*
102569838 TTTTATTTTTCTCTTTTA
1 TTTTATTTTTCGCTTTTA
*
102569856 TTTTATTTTTGGCTTTT
1 TTTTATTTTTCGCTTTT
102569873 CTGTTTTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTCGCTTTTA
Found at i:102570639 original size:21 final size:21
Alignment explanation
Indices: 102570615--102570672 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
102570605 TGTCCTTGAT
* *
102570615 TCACACGGGCTTGTGCCTCTG
1 TCACACGGGCGTGTGCCTCTA
*
102570636 TCACACGAGCGTGTGCCTCTA
1 TCACACGGGCGTGTGCCTCTA
102570657 TCACAC-GGCAGTGTGC
1 TCACACGGGC-GTGTGC
102570673 TACTCGTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.24
Consensus pattern (21 bp):
TCACACGGGCGTGTGCCTCTA
Found at i:102573647 original size:18 final size:18
Alignment explanation
Indices: 102573614--102573648 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102573604 CTAAAGCTAT
*
102573614 TTTTATTTTTCTCTTTTA
1 TTTTATTTTTCGCTTTTA
*
102573632 TTTTATTTTTGGCTTTT
1 TTTTATTTTTCGCTTTT
102573649 CTGTTTTCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTCGCTTTTA
Found at i:102578082 original size:14 final size:14
Alignment explanation
Indices: 102578063--102578090 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102578053 TAATCTCAAT
102578063 TTGCAACTATGTGA
1 TTGCAACTATGTGA
102578077 TTGCAACTATGTGA
1 TTGCAACTATGTGA
102578091 GAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
TTGCAACTATGTGA
Found at i:102581103 original size:46 final size:47
Alignment explanation
Indices: 102581016--102581188 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 47
102581006 ATATCTATGT
* * * *
102581016 CGATGCCATGTCCCAAATAGGGTCTTACACTGAC--ACATCTCGTA-GC
1 CGATGCCATGTCCCAAACA-TGTCTTACACTGGCTTACGTCTCG-AGGC
102581062 CGATG-CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGC
* * * * * *
102581108 CTATG-CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGC
1 CGATGCCATGTCCCAAACATGTCTTACACTGGC-TTACGTCTCGAGGC
* * *
102581154 CGATGCCATCTCCTAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAAACAT-GTCTTACACTGGCT
102581189 CTCATAAGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
44 12 0.11
45 13 0.12
46 56 0.53
47 13 0.12
48 12 0.11
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGC
Found at i:102584136 original size:36 final size:36
Alignment explanation
Indices: 102584096--102584168 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
102584086 AAGTTAGTGG
102584096 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
1 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
102584132 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
1 ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
102584168 A
1 A
102584169 ATGGTCTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (36 bp):
ATTTTAAATTCATCTACCACCATTTGAAGCAATTAA
Found at i:102587493 original size:9 final size:8
Alignment explanation
Indices: 102587474--102587507 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
102587464 AAAATTTTAA
*
102587474 TTTTTAAT
1 TTTTTCAT
102587482 TTTTTCAT
1 TTTTTCAT
102587490 TTTTTCAT
1 TTTTTCAT
102587498 TTTTT-AT
1 TTTTTCAT
102587505 TTT
1 TTT
102587508 AGAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 5 0.20
8 20 0.80
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCAT
Done.