Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 354 of 444
Found at i:102587499 original size:16 final size:15
Alignment explanation
Indices: 102587468--102587507 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
102587458 ATAAATAAAA
*
102587468 TTTTAATTTTTAATT
1 TTTTATTTTTTAATT
*
102587483 TTTTCATTTTTTCATT
1 TTTT-ATTTTTTAATT
102587499 TTTTATTTT
1 TTTTATTTT
102587508 AGAAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTTAATT
Found at i:102587582 original size:18 final size:17
Alignment explanation
Indices: 102587521--102587580 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
102587511 AATAATATAT
*
102587521 AATAATTTTTAATTTAAA
1 AATAATTTTTAATTT-TA
102587539 AATAATTTTT-ATTTT-
1 AATAATTTTTAATTTTA
** *
102587554 TTTATTTTTTAATTTTA
1 AATAATTTTTAATTTTA
102587571 AATAATTTTT
1 AATAATTTTT
102587581 TAGAATTAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 7 0.21
16 5 0.15
17 11 0.33
18 10 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
AATAATTTTTAATTTTA
Found at i:102587609 original size:20 final size:18
Alignment explanation
Indices: 102587526--102587610 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 18
102587516 TATATAATAA
* * *
102587526 TTTTTAATTTAAAAATAA
1 TTTTTAATTTTAAATTAT
*
102587544 TTTTT-ATTTT--TTTAT
1 TTTTTAATTTTAAATTAT
*
102587559 TTTTTAATTTTAAATAAT
1 TTTTTAATTTTAAATTAT
* *
102587577 TTTTTAGA-ATTAAGGTGTAT
1 TTTTTA-ATTTTAA-AT-TAT
102587597 TTTTTAATTTTAAA
1 TTTTTAATTTTAAA
102587611 AAATATATCT
Statistics
Matches: 49, Mismatches: 11, Indels: 13
0.67 0.15 0.18
Matches are distributed among these distances:
15 7 0.14
16 5 0.10
17 4 0.08
18 18 0.37
19 3 0.06
20 12 0.24
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTTAATTTTAAATTAT
Found at i:102594656 original size:13 final size:13
Alignment explanation
Indices: 102594638--102594677 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
102594628 AGTTTGGCAA
102594638 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
102594651 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
102594664 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
102594677 T
1 T
102594678 TTAGTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:102606097 original size:24 final size:22
Alignment explanation
Indices: 102606069--102606143 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 22
102606059 ACAAAAAAGA
102606069 TTTGTCTAAGTCATTTCGTTTCTT
1 TTTGTCTAAG-CATTTC-TTTCTT
* *
102606093 TTTGTCCAAG--TTGCTTCTCTT
1 TTTGTCTAAGCATTTCTT-TCTT
102606114 TTTGTCTAACGCATTTCCTTTCTT
1 TTTGTCTAA-GCATTT-CTTTCTT
102606138 CTTTGT
1 -TTTGT
102606144 AAGTTTCAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
20 2 0.05
21 15 0.37
22 1 0.02
24 15 0.37
25 8 0.20
ACGTcount: A:0.11, C:0.21, G:0.12, T:0.56
Consensus pattern (22 bp):
TTTGTCTAAGCATTTCTTTCTT
Found at i:102608500 original size:17 final size:18
Alignment explanation
Indices: 102608457--102608519 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
102608447 TTGATGATAC
102608457 CGATATTGATGATAGTGA
1 CGATATTGATGATAGTGA
*
102608475 CGATATTGATGCTAGT-A
1 CGATATTGATGATAGTGA
*
102608492 CGTTATTGATGATAGTGA
1 CGATATTGATGATAGTGA
102608510 C-ACTATTGAT
1 CGA-TATTGAT
102608520 CGTGACCTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.38
18 24 0.62
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.37
Consensus pattern (18 bp):
CGATATTGATGATAGTGA
Found at i:102610266 original size:9 final size:9
Alignment explanation
Indices: 102610252--102610295 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
102610242 CGTTCCATCA
102610252 TCCTTCTTT
1 TCCTTCTTT
102610261 TCCTTCTTT
1 TCCTTCTTT
*
102610270 TCTTTCTTT
1 TCCTTCTTT
*
102610279 TCTTTCTTT
1 TCCTTCTTT
*
102610288 CCCTTCTT
1 TCCTTCTT
102610296 CTTTGACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (9 bp):
TCCTTCTTT
Found at i:102610543 original size:12 final size:12
Alignment explanation
Indices: 102610509--102610550 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
102610499 GGCGATACCG
102610509 ATCTCTATCCCT
1 ATCTCTATCCCT
*
102610521 ATCCCTATCCCT
1 ATCTCTATCCCT
*
102610533 ATCTCTGTCCCT
1 ATCTCTATCCCT
*
102610545 CTCTCT
1 ATCTCT
102610551 GTCACGGCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.12, C:0.45, G:0.02, T:0.40
Consensus pattern (12 bp):
ATCTCTATCCCT
Found at i:102637313 original size:25 final size:25
Alignment explanation
Indices: 102637285--102637335 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
102637275 TGTGAGATTA
102637285 TAATATGTCTCATTCTGTATGCTCT
1 TAATATGTCTCATTCTGTATGCTCT
102637310 TAATATGTCTCATTCTGTATGCTCT
1 TAATATGTCTCATTCTGTATGCTCT
102637335 T
1 T
102637336 TGTGACCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (25 bp):
TAATATGTCTCATTCTGTATGCTCT
Found at i:102638868 original size:6 final size:6
Alignment explanation
Indices: 102638857--102638911 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
102638847 GTTTCCAAAC
* * * *
102638857 ATGGAA ATGGAA ATAGAA ATGAAA ATGAAA ATGAAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
102638905 ATGGAA A
1 ATGGAA A
102638912 CCTGCAATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.16
Consensus pattern (6 bp):
ATGGAA
Found at i:102639109 original size:26 final size:27
Alignment explanation
Indices: 102639055--102639129 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 27
102639045 AATTTTCTCG
** *
102639055 AAATTTTACTGAGGGTAAAATCAT-CA
1 AAATTTTACTGAGGGTAAAATTGTAAA
102639081 AAATTTTACTGAGGGTAAAATTGTAAA
1 AAATTTTACTGAGGGTAAAATTGTAAA
**
102639108 AAAAATTACT-AGGGTAAAATTG
1 AAATTTTACTGAGGGTAAAATTG
102639130 AGATGAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 34 0.79
27 9 0.21
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (27 bp):
AAATTTTACTGAGGGTAAAATTGTAAA
Found at i:102640777 original size:3 final size:3
Alignment explanation
Indices: 102640762--102640791 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
102640752 GTGGTGATTT
*
102640762 TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
102640792 AAGTTTTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:102641111 original size:43 final size:43
Alignment explanation
Indices: 102641050--102641247 Score: 238
Period size: 43 Copynumber: 4.6 Consensus size: 43
102641040 TTATCTAAAA
* * *
102641050 AAACGCCGCTAAAGGTCATGACCTTTAATGGCGCTTTCCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGGCGCTTTTCCCAC
* *
102641093 AAACGCCGTTAAAAGTCATGACCTTTAACGGCGCTTTTGCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGGCGCTTTTCCCAC
* *
102641136 AAATGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAACGGCGCTTTTCCCAC
* * * *
102641179 AAACGCAGCT-AAAGATCATGACCTTCAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAAG-TCATGACCTTTAACGGCGCTTTTCCCAC
* * *
102641222 AAATGTCGCT-AAAGACCATGACCTTT
1 AAACGCCGCTAAAAG-TCATGACCTTT
102641248 GGAAAAAGTG
Statistics
Matches: 136, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 4 0.03
43 132 0.97
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACCTTTAACGGCGCTTTTCCCAC
Found at i:102641328 original size:74 final size:74
Alignment explanation
Indices: 102641186--102641328 Score: 162
Period size: 74 Copynumber: 1.9 Consensus size: 74
102641176 CACAAACGCA
* * * * * ** *
102641186 GCTAAAGATCATGACCTTCAGCGACGCTTTTCCCACAAATGTCGCTAAAGACCATGACCTTTGGA
1 GCTAAAGATCATGACCTTCAGCAACACTTTTCCCAAAAACGTCGCTAAAGACCATAAAATTTGAA
102641251 AAAAGTGCC
66 AAAAGTGCC
* * * *
102641260 GCTAAAGATCATGACCTTTAGTAACACTTTTCCCAAAAACG-CTGCTAAAGATCATAAAATTTTA
1 GCTAAAGATCATGACCTTCAGCAACACTTTTCCCAAAAACGTC-GCTAAAGACCATAAAATTTGA
102641324 AAAAA
65 AAAAA
102641329 TAAAATATTA
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
73 1 0.02
74 55 0.98
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (74 bp):
GCTAAAGATCATGACCTTCAGCAACACTTTTCCCAAAAACGTCGCTAAAGACCATAAAATTTGAA
AAAAGTGCC
Found at i:102641341 original size:10 final size:10
Alignment explanation
Indices: 102641328--102641353 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
102641318 ATTTTAAAAA
102641328 ATAAAATATT
1 ATAAAATATT
102641338 ATAAAATATT
1 ATAAAATATT
102641348 ATAAAA
1 ATAAAA
102641354 GTCATGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
ATAAAATATT
Found at i:102645306 original size:3 final size:3
Alignment explanation
Indices: 102645300--102645340 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
102645290 TTTTTCTCTT
102645300 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102645341 TACTAAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:102645855 original size:14 final size:15
Alignment explanation
Indices: 102645816--102645846 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102645806 ACTATTTAAT
102645816 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
102645831 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
102645846 A
1 A
102645847 ATCACTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
ATATAAATTAAAAAC
Found at i:102646138 original size:8 final size:7
Alignment explanation
Indices: 102646117--102646264 Score: 75
Period size: 7 Copynumber: 20.3 Consensus size: 7
102646107 CACACTAGTT
102646117 ACCCTAA
1 ACCCTAA
102646124 ACCCTAA
1 ACCCTAA
102646131 ACCCCT-A
1 A-CCCTAA
*
102646138 ACCCTTA
1 ACCCTAA
*
102646145 ACCCTTA
1 ACCCTAA
*
102646152 ACCCTTA
1 ACCCTAA
102646159 ACCCTAAA
1 ACCCT-AA
*
102646167 ACCCATAC
1 ACCC-TAA
**
102646175 ACATTTAA
1 AC-CCTAA
*
102646183 ATCCTAA
1 ACCCTAA
102646190 ACCCTAA
1 ACCCTAA
*
102646197 ACCCCATA
1 ACCCTA-A
*
102646205 ACTCGTAA
1 AC-CCTAA
102646213 ACCCCT-A
1 A-CCCTAA
*
102646220 ACTCTTAA
1 AC-CCTAA
*
102646228 CCCCTAA
1 ACCCTAA
102646235 ACCCTAA
1 ACCCTAA
* *
102646242 GCCATAA
1 ACCCTAA
* *
102646249 AACATAA
1 ACCCTAA
102646256 ACCCTAA
1 ACCCTAA
102646263 AC
1 AC
102646265 TTCTTCCCCT
Statistics
Matches: 108, Mismatches: 23, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
6 5 0.05
7 75 0.69
8 24 0.22
9 4 0.04
ACGTcount: A:0.40, C:0.39, G:0.01, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:102646140 original size:14 final size:14
Alignment explanation
Indices: 102646117--102646241 Score: 58
Period size: 15 Copynumber: 8.5 Consensus size: 14
102646107 CACACTAGTT
102646117 ACCCTAAA-CCCTAA
1 ACCCTAAACCCCT-A
*
102646131 ACCCCT-AACCCTTA
1 A-CCCTAAACCCCTA
* *
102646145 ACCCTTAACCCTTA
1 ACCCTAAACCCCTA
*
102646159 ACCCTAAAACCCATA
1 ACCCT-AAACCCCTA
** *
102646174 CACATTTAAA-TCCTAA
1 -AC-CCTAAACCCCT-A
102646190 ACCCTAAACCCCATA
1 ACCCTAAACCCC-TA
*
102646205 ACTCGTAAACCCCTA
1 AC-CCTAAACCCCTA
* *
102646220 ACTCTTAACCCCTAA
1 ACCCTAAACCCCT-A
102646235 ACCCTAA
1 ACCCTAA
102646242 GCCATAAAAC
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
13 4 0.05
14 30 0.36
15 33 0.39
16 16 0.19
17 1 0.01
ACGTcount: A:0.38, C:0.41, G:0.01, T:0.21
Consensus pattern (14 bp):
ACCCTAAACCCCTA
Found at i:102646597 original size:15 final size:15
Alignment explanation
Indices: 102646573--102646624 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
102646563 TATACCCATG
*
102646573 ACCATTAAACCTTAA
1 ACCATAAAACCTTAA
*
102646588 ACCATAAAACCCTAA
1 ACCATAAAACCTTAA
*
102646603 ACCAT-AGACCTTAA
1 ACCATAAAACCTTAA
*
102646617 ACCTTAAA
1 ACCATAAA
102646625 TATTAAACCC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (15 bp):
ACCATAAAACCTTAA
Found at i:102646624 original size:36 final size:35
Alignment explanation
Indices: 102646568--102646640 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 35
102646558 TACTATATAC
102646568 CCATGACCATTAAACCTTAAACCATAAAACCCTAAA
1 CCATGACCATTAAACCTTAAA-CATAAAACCCTAAA
* *
102646604 CCATAGACC-TTAAACCTTAAATATTAAACCCTAAA
1 CCAT-GACCATTAAACCTTAAACATAAAACCCTAAA
102646639 CC
1 CC
102646641 CCAAAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 14 0.41
36 16 0.47
37 4 0.12
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.22
Consensus pattern (35 bp):
CCATGACCATTAAACCTTAAACATAAAACCCTAAA
Found at i:102646641 original size:7 final size:7
Alignment explanation
Indices: 102646577--102646640 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
102646567 CCCATGACCA
102646577 TTAAACC
1 TTAAACC
102646584 TTAAACC
1 TTAAACC
*
102646591 ATAAAACC
1 -TTAAACC
*
102646599 CTAAACC
1 TTAAACC
* *
102646606 ATAGACC
1 TTAAACC
102646613 TTAAACC
1 TTAAACC
**
102646620 TTAAATA
1 TTAAACC
102646627 TTAAACC
1 TTAAACC
*
102646634 CTAAACC
1 TTAAACC
102646641 CCAAAATAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (7 bp):
TTAAACC
Found at i:102646810 original size:38 final size:39
Alignment explanation
Indices: 102646763--102646846 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 39
102646753 TGTTTAAGGT
* * *
102646763 TTTAGGGGTTATAGTTTAGTGTTTATGGTT-TTTTAGGG
1 TTTAGGGGTTATAGATTAGTGTTTATGATTCTTTGAGGG
102646801 TTTAGGGGTTATAGATTAGTGTTTATGATTCTTTGAGGG
1 TTTAGGGGTTATAGATTAGTGTTTATGATTCTTTGAGGG
102646840 TTTAGGG
1 TTTAGGG
102646847 TTTTAGGGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 28 0.67
39 14 0.33
ACGTcount: A:0.18, C:0.01, G:0.32, T:0.49
Consensus pattern (39 bp):
TTTAGGGGTTATAGATTAGTGTTTATGATTCTTTGAGGG
Found at i:102646939 original size:41 final size:40
Alignment explanation
Indices: 102646865--102646951 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 40
102646855 GTTATATAAC
* *
102646865 TTTTTGCGGCGTTTTGACCACAAACGTCACTATTGTTCTGG
1 TTTTTGCGGCGTTTTGACCAAAAACGTCACTATTGCTCT-G
*
102646906 TTTTTAGCGGCGTTTT-ACCAAAAACG-CTGCTATTGCTCTG
1 TTTTT-GCGGCGTTTTGACCAAAAACGTC-ACTATTGCTCTG
102646946 TTTTTG
1 TTTTTG
102646952 TTAAGACGCC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
39 1 0.02
40 7 0.17
41 23 0.56
42 10 0.24
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (40 bp):
TTTTTGCGGCGTTTTGACCAAAAACGTCACTATTGCTCTG
Found at i:102650848 original size:6 final size:6
Alignment explanation
Indices: 102650832--102650877 Score: 76
Period size: 6 Copynumber: 7.7 Consensus size: 6
102650822 ATTTTAAATT
102650832 TTTAGTA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA-A TTTA
1 TTTA-TA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA
102650878 GTCTTAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.13
6 30 0.77
7 4 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (6 bp):
TTTATA
Found at i:102652502 original size:38 final size:37
Alignment explanation
Indices: 102652429--102652503 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
102652419 GTTATTAAAT
* **
102652429 TTTTATAAAAAATAAAAAATATTTAAAATTTAGAGAA
1 TTTTATAAAAAATAAAAAATATATAAAATAAAGAGAA
*
102652466 TTTTATAAAAATCGTAAAAAA-ATATAAAATAAAGAGAA
1 TTTTATAAAAA--ATAAAAAATATATAAAATAAAGAGAA
102652504 ATATAGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 11 0.34
38 14 0.44
39 7 0.22
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (37 bp):
TTTTATAAAAAATAAAAAATATATAAAATAAAGAGAA
Found at i:102652786 original size:9 final size:9
Alignment explanation
Indices: 102652772--102652897 Score: 96
Period size: 9 Copynumber: 13.4 Consensus size: 9
102652762 TTTTGATGCA
*
102652772 TTTTATAGT
1 TTTTATAAT
*
102652781 TTTTATGAT
1 TTTTATAAT
*
102652790 TTTTATAAAA
1 TTTTAT-AAT
102652800 TTTTATAAT
1 TTTTATAAT
102652809 TTTTACT-AT
1 TTTTA-TAAT
102652818 TTTTATAAT
1 TTTTATAAT
102652827 TTTTAATAATT
1 TTTT-ATAA-T
*
102652838 TTTTATTAAAA
1 TTTTA-T-AAT
*
102652849 TTTAATAATT
1 TTTTATAA-T
102652859 TTTTATAAT
1 TTTTATAAT
* *
102652868 TTTAATTGAT
1 TTTTA-TAAT
102652878 TTTTAT--T
1 TTTTATAAT
102652885 TTTTATAAT
1 TTTTATAAT
102652894 TTTT
1 TTTT
102652898 TTTGCCACAT
Statistics
Matches: 94, Mismatches: 12, Indels: 22
0.73 0.09 0.17
Matches are distributed among these distances:
7 7 0.07
8 1 0.01
9 46 0.49
10 28 0.30
11 10 0.11
12 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:102652793 original size:18 final size:17
Alignment explanation
Indices: 102652772--102652897 Score: 69
Period size: 19 Copynumber: 6.8 Consensus size: 17
102652762 TTTTGATGCA
*
102652772 TTTTATAGTTTTTATGAT
1 TTTTATAATTTTTAT-AT
*
102652790 TTTTATAAAATTTTATAAT
1 TTTTAT-AATTTTTAT-AT
102652809 TTTTACT-ATTTTTATAAT
1 TTTTA-TAATTTTTAT-AT
102652827 TTTTAATAATTTTT-TAT
1 TTTT-ATAATTTTTATAT
102652844 TAAAATTTAATAATTTTTTATAAT
1 T----TTT-ATAA-TTTTTAT-AT
* *
102652868 TTTAATTGATTTTTAT-T
1 TTTTA-TAATTTTTATAT
102652885 TTTTATAATTTTT
1 TTTTATAATTTTT
102652898 TTTGCCACAT
Statistics
Matches: 88, Mismatches: 8, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
16 7 0.08
17 8 0.09
18 22 0.25
19 29 0.33
20 5 0.06
21 8 0.09
22 5 0.06
23 1 0.01
24 3 0.03
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTTATAATTTTTATAT
Found at i:102652802 original size:28 final size:28
Alignment explanation
Indices: 102652771--102652840 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
102652761 TTTTTGATGC
*
102652771 ATTTTATAGTTTTTA-TGATTTTTATAAA
1 ATTTTATAATTTTTACT-ATTTTTATAAA
102652799 ATTTTATAATTTTTACTATTTTTAT-AA
1 ATTTTATAATTTTTACTATTTTTATAAA
*
102652826 TTTTTAATAATTTTT
1 ATTTT-ATAATTTTT
102652841 TATTAAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 6 0.16
28 31 0.82
29 1 0.03
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (28 bp):
ATTTTATAATTTTTACTATTTTTATAAA
Found at i:102652866 original size:10 final size:10
Alignment explanation
Indices: 102652780--102652870 Score: 73
Period size: 10 Copynumber: 9.3 Consensus size: 10
102652770 CATTTTATAG
*
102652780 TTTTTATGA-
1 TTTTTATAAT
*
102652789 TTTTTATAAA
1 TTTTTATAAT
*
102652799 ATTTTATAA-
1 TTTTTATAAT
102652808 TTTTTACT-A-
1 TTTTTA-TAAT
102652817 TTTTTATAAT
1 TTTTTATAAT
*
102652827 TTTTAATAAT
1 TTTTTATAAT
*
102652837 TTTTTATTAAA
1 TTTTTA-TAAT
* *
102652848 ATTTAATAAT
1 TTTTTATAAT
102652858 TTTTTATAAT
1 TTTTTATAAT
102652868 TTT
1 TTT
102652871 AATTGATTTT
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
8 1 0.02
9 21 0.32
10 37 0.56
11 7 0.11
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:102653719 original size:29 final size:29
Alignment explanation
Indices: 102653687--102653744 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
102653677 CTGGTTTTTC
* *
102653687 AAGTTAGTTAGTCTGTTAG-TAGTTAGCTA
1 AAGTCAGTTAGT-TGTTAGCTAGGTAGCTA
*
102653716 AAGTCAGTTCGTTGTTAGCTAGGTAGCTA
1 AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
102653745 TTACTCTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (29 bp):
AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
Found at i:102661867 original size:30 final size:30
Alignment explanation
Indices: 102661831--102661899 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
102661821 GTCACAATTA
*
102661831 ACCA-TTTCTCGTTATAGACGTAAC-GAGGCT
1 ACCATTTTCT-GTTAGAGACGTAACAGA-GCT
* *
102661861 ACCATTTTCTGTTAGATACTTAACAGAGCT
1 ACCATTTTCTGTTAGAGACGTAACAGAGCT
102661891 ACCATTTTC
1 ACCATTTTC
102661900 CATCCCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 27 0.79
31 7 0.21
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
ACCATTTTCTGTTAGAGACGTAACAGAGCT
Found at i:102663187 original size:48 final size:47
Alignment explanation
Indices: 102663092--102663196 Score: 126
Period size: 48 Copynumber: 2.3 Consensus size: 47
102663082 AAGGGACAAT
* *
102663092 GGGGGAGAGGGAAAGAATAAGAGTAGGAGGAGGGATGGTAGATAAGA
1 GGGGGAGAGGGAAAGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
* * *
102663139 GGGGGAGAGGGAGAGAGAATCAGAGAAGG-GGAGGGATGGTGGGGAAGA
1 GGGGGAGAGGGA-A-AGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
102663187 --GGGAGAGGGA
1 GGGGGAGAGGGA
102663197 TGGGAGAGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
46 10 0.20
47 12 0.24
48 17 0.33
49 12 0.24
ACGTcount: A:0.36, C:0.01, G:0.55, T:0.08
Consensus pattern (47 bp):
GGGGGAGAGGGAAAGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
Found at i:102663288 original size:30 final size:30
Alignment explanation
Indices: 102663217--102663288 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
102663207 GTGATAGGGG
* *
102663217 ATGGAAAATGGCAACTTCGTTAAGTATCTA
1 ATGGAAAATGGTAACTCCGTTAAGTATCTA
* * * *
102663247 ATGGAAAATGGTAGCTCCGTTACGTTTGTA
1 ATGGAAAATGGTAACTCCGTTAAGTATCTA
102663277 ATGGAAAATGGT
1 ATGGAAAATGGT
102663289 TGTGGTGACT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (30 bp):
ATGGAAAATGGTAACTCCGTTAAGTATCTA
Found at i:102674257 original size:28 final size:28
Alignment explanation
Indices: 102674226--102674282 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
102674216 AATTTTGATG
*
102674226 AAATCAGCTATTTG-GGG-CTAATTTGTGA
1 AAATCAG-T-TTTGAGGGACTAAATTGTGA
*
102674254 AAATGAGTTTTGAGGGACTAAATTGTGA
1 AAATCAGTTTTGAGGGACTAAATTGTGA
102674282 A
1 A
102674283 TTAAATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 4 0.16
28 17 0.68
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (28 bp):
AAATCAGTTTTGAGGGACTAAATTGTGA
Found at i:102676880 original size:27 final size:26
Alignment explanation
Indices: 102676831--102676989 Score: 176
Period size: 27 Copynumber: 5.9 Consensus size: 26
102676821 AGGAAACGTC
* *
102676831 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
102676858 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
102676884 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTGAT
*
102676912 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
* *
102676939 CTGCTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* * *
102676966 CTGGTGACTCCGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
102676990 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.08
27 101 0.89
28 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:102676910 original size:54 final size:54
Alignment explanation
Indices: 102676828--102676989 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
102676818 TGGAGGAAAC
*
102676828 GTCCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
102676882 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * * *
102676936 GTTCTGCTGGCTCTACCACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
102676989 G
1 G
102676990 GCAGCCTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.13
54 86 0.87
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:102684456 original size:27 final size:27
Alignment explanation
Indices: 102684420--102684483 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
102684410 GTCTTTGAAT
102684420 TTTGATGAAATGAGCTATTTG-GGG-CTAA
1 TTTG-TGAAATGAG-T-TTTGAGGGACTAA
102684448 TTTGTGAAAATGAGTTTTGAGGGACTAA
1 TTTGTG-AAATGAGTTTTGAGGGACTAA
*
102684476 ATTGTGAA
1 TTTGTGAA
102684484 TTAAATATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
26 4 0.12
27 8 0.25
28 20 0.62
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (27 bp):
TTTGTGAAATGAGTTTTGAGGGACTAA
Found at i:102684458 original size:28 final size:28
Alignment explanation
Indices: 102684427--102684483 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
102684417 AATTTTGATG
*
102684427 AAATGAGCTATTTG-GGG-CTAATTTGTGA
1 AAATGAG-T-TTTGAGGGACTAAATTGTGA
102684455 AAATGAGTTTTGAGGGACTAAATTGTGA
1 AAATGAGTTTTGAGGGACTAAATTGTGA
102684483 A
1 A
102684484 TTAAATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 18 0.69
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
AAATGAGTTTTGAGGGACTAAATTGTGA
Found at i:102698280 original size:26 final size:26
Alignment explanation
Indices: 102698251--102698392 Score: 100
Period size: 26 Copynumber: 5.7 Consensus size: 26
102698241 CTTATTAGTG
*
102698251 TCCCGATATATGGCTCTTCGTGAGCT
1 TCCCGATATATGGCTCTCCGTGAGCT
* **
102698277 TCCCGTTGAT-TGGCTCTTTGTGAGCT
1 TCCCGAT-ATATGGCTCTCCGTGAGCT
**
102698303 TCTTGAT-TAATGGCTCTCCG-GAGCT
1 TCCCGATAT-ATGGCTCTCCGTGAGCT
* * * *
102698328 TCCCAATAT-TGGCT-TGCTTGAACT
1 TCCCGATATATGGCTCTCCGTGAGCT
* *
102698352 TCCCAATATATGGCTATCCG-GAGCT
1 TCCCGATATATGGCTCTCCGTGAGCT
*
102698377 TCCCGTTA-ATGGCTCT
1 TCCCGATATATGGCTCT
102698393 ATGGAGCTAC
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
23 2 0.02
24 26 0.29
25 24 0.27
26 36 0.40
27 2 0.02
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.36
Consensus pattern (26 bp):
TCCCGATATATGGCTCTCCGTGAGCT
Found at i:102698378 original size:25 final size:24
Alignment explanation
Indices: 102698312--102698380 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
102698302 TTCTTGATTA
102698312 ATGGCTCTCCGGAGCTTCCCAATAT
1 ATGGCT-TCCGGAGCTTCCCAATAT
** *
102698337 -TGGCTTGCTTGAACTTCCCAATAT
1 ATGGCTT-CCGGAGCTTCCCAATAT
102698361 ATGGCTATCCGGAGCTTCCC
1 ATGGCT-TCCGGAGCTTCCC
102698381 GTTAATGGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.54
25 14 0.40
26 1 0.03
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.30
Consensus pattern (24 bp):
ATGGCTTCCGGAGCTTCCCAATAT
Found at i:102698398 original size:24 final size:24
Alignment explanation
Indices: 102698372--102698501 Score: 66
Period size: 24 Copynumber: 5.3 Consensus size: 24
102698362 TGGCTATCCG
102698372 GAGCTTCCCGTTAATGGCTC-TAT
1 GAGCTTCCCGTTAATGGCTCGTAT
* ** * *
102698395 GGAGCTACTTGTTATTGGCTCGCAT
1 -GAGCTTCCCGTTAATGGCTCGTAT
* *
102698420 GAGCTTCCTGATT-ATGGCTCTTAT
1 GAGCTTCCCG-TTAATGGCTCGTAT
* ** * **
102698444 GAGCTTTCCGTTATACAGCCCGGGT
1 GAGCTTCCCGTTA-ATGGCTCGTAT
* **
102698469 AAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTA-ATGGCTCGTAT
102698494 GAGCTTCC
1 GAGCTTCC
102698502 TATATATGGC
Statistics
Matches: 74, Mismatches: 28, Indels: 7
0.68 0.26 0.06
Matches are distributed among these distances:
23 2 0.03
24 40 0.54
25 32 0.43
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCGTAT
Found at i:102698860 original size:17 final size:17
Alignment explanation
Indices: 102698816--102698861 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
102698806 GAAATACATG
*
102698816 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
102698831 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
102698847 GAAATGAATGATATA
1 GAAATGAATGATATA
102698862 TGTTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:102702815 original size:39 final size:40
Alignment explanation
Indices: 102702637--102702819 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
102702627 CCGCACCAAG
* * * * * * * *
102702637 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
102702677 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
102702717 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
102702757 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
102702796 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
102702820 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:102710877 original size:39 final size:40
Alignment explanation
Indices: 102710699--102710881 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
102710689 CCGCACCAAG
* * * * * * * *
102710699 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
102710739 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
102710779 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
102710819 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
102710858 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
102710882 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:102719353 original size:28 final size:28
Alignment explanation
Indices: 102719288--102719388 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
102719278 ATAGTGAATC
*
102719288 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
102719317 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
102719345 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
102719375 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102719389 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:102724098 original size:29 final size:29
Alignment explanation
Indices: 102724066--102724200 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
102724056 ATACCCTTCG
** * *
102724066 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
102724095 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102724123 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
102724152 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102724181 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
102724201 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 23 0.25
29 70 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:102724151 original size:57 final size:58
Alignment explanation
Indices: 102724041--102724199 Score: 176
Period size: 57 Copynumber: 2.8 Consensus size: 58
102724031 AATTTAAGCC
* *** * * ** * *
102724041 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * *
102724099 TGCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
102724156 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
102724200 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
57 45 0.54
58 38 0.46
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:102726130 original size:203 final size:203
Alignment explanation
Indices: 102725773--102726182 Score: 624
Period size: 203 Copynumber: 2.0 Consensus size: 203
102725763 TTATCCTGAT
* * * *
102725773 AGCTAAGCATGACAACCATTTATCGATTAAAATAAAGGTGTTCAACCCTTAAAAACCCATAATCC
1 AGCTAAGCATGACAACCATTTATAGATTAAAATAAAGGTGTTCAAACCGTAAAAACCCAGAATCC
* * * * *
102725838 GTAATTATACAGAAGCTTTTAAGAGTTCCTACTCTACTTCTCTCTTTAATTCGCAAGTACAGAGA
66 ATAATTATACAGAAGCTTTTAAGAGTTCCTACTCTACTTCTCTCTTCAATCCACAAGTACAGAAA
* * * *
102725903 GGTAAGGAAGTTTACCAATTCCTCAACTTCTCTACTACCAGACTTCAATTCTCATGATGGTTGCG
131 GGTAAGGAAATTCACCAATTCCTCAACTTCTCTACTACCAGACTTCAATTCTCATGACGATTGCG
102725968 ACATGCAA
196 ACATGCAA
* *
102725976 AGCTAAGCATGACAACCATTTATTAG-TTAAACTAAAGGTGTTCAAACCGTAAAAATCCAGAATC
1 AGCTAAGCATGACAACCATTTA-TAGATTAAAATAAAGGTGTTCAAACCGTAAAAACCCAGAATC
* * *
102726040 CATAATTATATAGAAGCTTTTAAGTGTTCTTACTCTACTTCTCTCTTCAATCCACAAGTACAGAA
65 CATAATTATACAGAAGCTTTTAAGAGTTCCTACTCTACTTCTCTCTTCAATCCACAAGTACAGAA
*
102726105 AGGTAAGGAAATTCACCAGTTCCTCAACTTCTCTACTACCAGACTTCAATTCTCATGACGATTGC
130 AGGTAAGGAAATTCACCAATTCCTCAACTTCTCTACTACCAGACTTCAATTCTCATGACGATTGC
*
102726170 GACATGCAG
195 GACATGCAA
102726179 AGCT
1 AGCT
102726183 TCTTTCAGCT
Statistics
Matches: 186, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
203 184 0.99
204 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (203 bp):
AGCTAAGCATGACAACCATTTATAGATTAAAATAAAGGTGTTCAAACCGTAAAAACCCAGAATCC
ATAATTATACAGAAGCTTTTAAGAGTTCCTACTCTACTTCTCTCTTCAATCCACAAGTACAGAAA
GGTAAGGAAATTCACCAATTCCTCAACTTCTCTACTACCAGACTTCAATTCTCATGACGATTGCG
ACATGCAA
Found at i:102728217 original size:48 final size:48
Alignment explanation
Indices: 102728146--102728269 Score: 158
Period size: 48 Copynumber: 2.6 Consensus size: 48
102728136 AAGCTAATGC
* * * *
102728146 CATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATG
* *
102728194 CATGTCCTAGACATGTCTTACACTGGTTTATATATCTCGAGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATG
* * * *
102728242 TATGTCCCAGACATGTGTTACATTAGCT
1 CATGTCCTAGACATGTCTTACACTAGCT
102728270 CTCATAATGT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (48 bp):
CATGTCCTAGACATGTCTTACACTAGCTTATATATCTCGAGGCCGATG
Found at i:102732281 original size:2 final size:2
Alignment explanation
Indices: 102732274--102732309 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
102732264 CAAACAGGCA
102732274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102732310 CCATATCACA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102733612 original size:28 final size:26
Alignment explanation
Indices: 102733566--102733625 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
102733556 GGCTAAGTTC
102733566 AATTTATTTTTTAATTATTAATATAT
1 AATTTATTTTTTAATTATTAATATAT
* * *
102733592 TATTTATTTATTTTATATATTATTATAT
1 AATTTATTT-TTTAAT-TATTAATATAT
102733620 AATTTA
1 AATTTA
102733626 AATAACATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.29
27 5 0.18
28 15 0.54
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTTATTTTTTAATTATTAATATAT
Found at i:102733624 original size:20 final size:20
Alignment explanation
Indices: 102733569--102733624 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
102733559 TAAGTTCAAT
*
102733569 TTATTTTTTAATTATTAATATA
1 TTATTTATTAATT-TT-ATATA
*
102733591 TTATTTATTTATTTTATATA
1 TTATTTATTAATTTTATATA
102733611 TTA-TTATATAATTT
1 TTATTTAT-TAATTT
102733625 AAATAACATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 13 0.43
21 2 0.07
22 11 0.37
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTTATTAATTTTATATA
Found at i:102736302 original size:4 final size:4
Alignment explanation
Indices: 102736287--102736316 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
102736277 GCCTTAAAAC
102736287 TAAA TGAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA T-AAA TAAA TAAA TAAA TAAA TAAA T
102736317 GATTGTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:102736310 original size:12 final size:13
Alignment explanation
Indices: 102736287--102736318 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
102736277 GCCTTAAAAC
102736287 TAAATGAAATAAA
1 TAAATGAAATAAA
102736300 TAAAT-AAATAAA
1 TAAATGAAATAAA
102736312 TAAATGA
1 TAAATGA
102736319 TTGTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (13 bp):
TAAATGAAATAAA
Found at i:102737866 original size:13 final size:13
Alignment explanation
Indices: 102737848--102737889 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
102737838 TTTCACAAAT
102737848 TATTATTATTTTA
1 TATTATTATTTTA
102737861 TATTATTA-TTTA
1 TATTATTATTTTA
102737873 TA-TATTATTGTTA
1 TATTATTATT-TTA
102737886 TATT
1 TATT
102737890 TTTACTCGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 5 0.19
12 7 0.27
13 13 0.50
14 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
TATTATTATTTTA
Found at i:102737867 original size:16 final size:16
Alignment explanation
Indices: 102737782--102737870 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
102737772 CTTATTTTTA
102737782 TATTTTATATTA-TAT
1 TATTTTATATTATTAT
* *
102737797 AATTATTCTATTATATAT
1 TATT-TTATATTAT-TAT
102737815 TATTTGTATTATTATTTAT
1 TATTT-TA-TATTA-TTAT
*
102737834 TATTTTTCACAAATTATTAT
1 TA-TTTT---ATATTATTAT
102737854 TATTTTATATTATTAT
1 TATTTTATATTATTAT
102737870 T
1 T
102737871 TATATATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 17 0.29
17 1 0.02
18 7 0.12
19 15 0.26
20 10 0.17
21 4 0.07
22 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (16 bp):
TATTTTATATTATTAT
Found at i:102737880 original size:30 final size:30
Alignment explanation
Indices: 102737773--102737886 Score: 83
Period size: 33 Copynumber: 3.7 Consensus size: 30
102737763 TCTTTTTACC
* *
102737773 TTATTTTTATATT-TTA-TATTATATAATTA
1 TTATTTATATATTATTATTATTTTAT-ATTA
*
102737802 TTCTATTATATATTATT-TGTATTATTAT-TTA
1 TTAT-TTATATATTATTAT-TATT-TTATATTA
* *
102737833 TTATTTTTCACAAATTATTATTATTTTATATTA
1 TTA--TTT-ATATATTATTATTATTTTATATTA
*
102737866 TTATTTATATATTATTGTTAT
1 TTATTTATATATTATTATTAT
102737887 ATTTTTACTC
Statistics
Matches: 66, Mismatches: 9, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
29 3 0.05
30 20 0.30
31 10 0.15
32 10 0.15
33 22 0.33
34 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (30 bp):
TTATTTATATATTATTATTATTTTATATTA
Found at i:102741846 original size:29 final size:29
Alignment explanation
Indices: 102741792--102741848 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
102741782 GTGACGAGAT
* **
102741792 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGAGTGAAATGTA
102741821 TGGCACTAAGTGTGCGAGAAGT-AAATGT
1 TGGCACTAAGTGTGCGAG-AGTGAAATGT
102741849 GTACGGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGAGTGAAATGTA
Found at i:102741867 original size:72 final size:72
Alignment explanation
Indices: 102741750--102741910 Score: 313
Period size: 72 Copynumber: 2.2 Consensus size: 72
102741740 GTTTGCTTTC
*
102741750 GGCACTAAGTGTGCGAGAAGTAAATGTGTACGGTGACGAGATTGGCACTGAGTGTGCGAGCTTGA
1 GGCACTAAGTGTGCGAGAAGTAAATGTGTACGGTGACGAGATTGGCACTGAGTGTGAGAGCTTGA
102741815 AATGTAT
66 AATGTAT
102741822 GGCACTAAGTGTGCGAGAAGTAAATGTGTACGGTGACGAGATTGGCACTGAGTGTGAGAGCTTGA
1 GGCACTAAGTGTGCGAGAAGTAAATGTGTACGGTGACGAGATTGGCACTGAGTGTGAGAGCTTGA
102741887 AATGTAT
66 AATGTAT
102741894 GGCACTAAGTGTGCGAG
1 GGCACTAAGTGTGCGAG
102741911 TTTGGACTAT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 88 1.00
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.24
Consensus pattern (72 bp):
GGCACTAAGTGTGCGAGAAGTAAATGTGTACGGTGACGAGATTGGCACTGAGTGTGAGAGCTTGA
AATGTAT
Found at i:102741923 original size:29 final size:29
Alignment explanation
Indices: 102741864--102741966 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
102741854 GTGACGAGAT
* * *
102741864 TGGCACTGAGTGTGAGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
102741893 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
102741922 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
102741951 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102741967 TGATCGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:102753881 original size:206 final size:206
Alignment explanation
Indices: 102753520--102754411 Score: 1396
Period size: 206 Copynumber: 4.3 Consensus size: 206
102753510 GCAGATCTGG
*
102753520 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
102753585 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
102753650 GAACAAATCAAAGTCTGGCATCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTCACCTTC
131 GAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
102753715 AGATGATTTCA
196 AGATGATTTCA
* * * *
102753726 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* ** *
102753791 ATTTGGCTTTCACGTGTTTACGACGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
102753856 GAACAAATCGAAGTCTGGCATCTCCATATTTGACGGAGAGCAGACACCTAGCAGATCTCACCTTC
131 GAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
102753921 AGATGATTTCA
196 AGATGATTTCA
* *
102753932 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAACTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
102753997 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCACA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
102754062 GAACAAATCGAAGTCTGGCATCT-C-TACTTCGACGGAGGGCAGACACATAGCAGATC-CAACCT
131 GAACAAATCGAAGTCTGGCATCTCCATA-TTCGACGGAGGGCAGACACATAGCAGATCTC-ACCT
102754124 TCAGATGATTAT-A
194 TCAGATGATT-TCA
**** * *
102754137 CTGTTTTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAATGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
102754202 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * * *
102754267 AAACAAATTGAGGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
**
102754332 AGATGATTAGA
196 AGATGATTTCA
* * *
102754343 CTGAAGCAGATCTAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
102754408 ATTT
66 ATTT
102754412 AGTTTTCGTG
Statistics
Matches: 625, Mismatches: 54, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
204 3 0.00
205 179 0.29
206 441 0.71
207 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
AGATGATTTCA
Found at i:102754296 original size:411 final size:412
Alignment explanation
Indices: 102753520--102754411 Score: 1432
Period size: 411 Copynumber: 2.2 Consensus size: 412
102753510 GCAGATCTGG
*
102753520 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
1 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
*
102753585 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCACA
*
102753650 GAACAAATCAAAGTCTGGCATCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTCACCTTC
131 GAACAAATCAAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
*
102753715 AGATGATTTCACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATTGA
196 AGATGATTTCACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA
* *
102753780 AGACATAGCTGATTTGGCTTTCACGTGTTTACGACGAAGTAAATCTAAGATGATTTGGCATCTCT
261 AGACATAGCTGATTTGGCTTTCACGTGCTTACGACGAAGCAAATCTAAGATGATTTGGCATCTCT
* * *
102753845 GTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCATATTTGACGGAGAGCAGACACCTAGCAG
326 GTATTGTCAGAAAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAG
* *
102753910 ATCTCACCTTCAGATGATTTCA
391 ATCTAACCTTCAGATGATTACA
* *
102753932 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAACTG
1 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
102753997 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCACA
66 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCACA
*
102754062 GAACAAATCGAAGTCTGGCATCT-C-TACTTCGACGGAGGGCAGACACATAGCAGATC-CAACCT
131 GAACAAATCAAAGTCTGGCATCTCCATA-TTCGACGGAGGGCAGACACATAGCAGATCTC-ACCT
*** * * * *
102754124 TCAGATGATTAT-ACTGTTTTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAATGAGCAAAT
194 TCAGATGATT-TCACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAAT
** *
102754188 CGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAGTCTAAGATGATTTGGCATC
258 CGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGACGAAGCAAATCTAAGATGATTTGGCATC
* * * * * * *
102754253 TTTGTATTGTCAGAAAACAAATTGAGGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAG
323 TCTGTATTGTCAGAAAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGAGCAGACACATAG
*
102754318 CAGATCTAACCTTCAGATGATTAGA
388 CAGATCTAACCTTCAGATGATTACA
*
102754343 CTGAAGCAGATCTAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
1 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
102754408 ATTT
66 ATTT
102754412 AGTTTTCGTG
Statistics
Matches: 442, Mismatches: 35, Indels: 7
0.91 0.07 0.01
Matches are distributed among these distances:
410 3 0.01
411 290 0.66
412 149 0.34
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (412 bp):
CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCACA
GAACAAATCAAAGTCTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTCACCTTC
AGATGATTTCACTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA
AGACATAGCTGATTTGGCTTTCACGTGCTTACGACGAAGCAAATCTAAGATGATTTGGCATCTCT
GTATTGTCAGAAAACAAATCGAAGTCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAG
ATCTAACCTTCAGATGATTACA
Found at i:102754700 original size:12 final size:13
Alignment explanation
Indices: 102754678--102754706 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
102754668 CCTTAAAACC
102754678 AAATAAAATAAAT
1 AAATAAAATAAAT
102754691 AAAT-AAATAAAT
1 AAATAAAATAAAT
102754703 AAAT
1 AAAT
102754707 GATTGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAAAATAAAT
Found at i:102756262 original size:16 final size:16
Alignment explanation
Indices: 102756177--102756265 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
102756167 CTTATTTTTA
102756177 TATTTTATATTA-TAT
1 TATTTTATATTATTAT
* *
102756192 AATTATTCTATTATATAT
1 TATT-TTATATTAT-TAT
102756210 TATTTGTATTATTATTTAT
1 TATTT-TA-TATTA-TTAT
*
102756229 TATTTTTCACAAATTATTAT
1 TA-TTTT---ATATTATTAT
102756249 TATTTTATATTATTAT
1 TATTTTATATTATTAT
102756265 T
1 T
102756266 GTTATATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 17 0.29
17 1 0.02
18 7 0.12
19 15 0.26
20 10 0.17
21 4 0.07
22 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (16 bp):
TATTTTATATTATTAT
Found at i:102756273 original size:11 final size:11
Alignment explanation
Indices: 102756259--102756284 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
102756249 TATTTTATAT
102756259 TATTATTGTTA
1 TATTATTGTTA
102756270 TATTATTGTTA
1 TATTATTGTTA
102756281 TATT
1 TATT
102756285 TTTACTCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
TATTATTGTTA
Found at i:102756702 original size:17 final size:16
Alignment explanation
Indices: 102756679--102756737 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
102756669 CCAATATATT
102756679 TTATATTTTTATATAA
1 TTATATTTTTATATAA
*
102756695 TTATTATTCTTATA-AA
1 TTA-TATTTTTATATAA
102756711 -TATACTTTTTATTATATA
1 TTATA-TTTTTA-TATA-A
102756729 TTATATTTT
1 TTATATTTT
102756738 AAATCTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 2 0.06
15 7 0.20
16 7 0.20
17 10 0.29
18 5 0.14
19 4 0.11
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATATTTTTATATAA
Found at i:102764058 original size:44 final size:45
Alignment explanation
Indices: 102763955--102764442 Score: 278
Period size: 44 Copynumber: 11.0 Consensus size: 45
102763945 GACTGTCATG
* * * *
102763955 CTGATAT-TTCAATCTGCTCTCT-ATCGAACACAAAGACGCCAAAT
1 CTGATATCTTCGATCTGCTCTCTGA-CAAATACAGAGACGCCAAAT
* *
102763999 CTGCTATCTTCGATCTGCTCTCTGAC-AATACAGAGAAGCCAAAT
1 CTGATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
* * * *
102764043 CTGATGTCTTTGATCTGCTC-CTTGAC-AATACAGGGATGCCAAAT
1 CTGATATCTTCGATCTGCTCTC-TGACAAATACAGAGACGCCAAAT
* * * * * * * * **
102764087 CAGCT-TCTTGGATTTGCTC-CTCGTCGAATACAAAGATGTTAAAT
1 CTGATATCTTCGATCTGCTCTCT-GACAAATACAGAGACGCCAAAT
* * * * *
102764131 CT-ACTATC-TCTGATTTGCTCTCTAAC-CATACAGAGATGTCAAAT
1 CTGA-TATCTTC-GATCTGCTCTCTGACAAATACAGAGACGCCAAAT
* * *
102764175 CTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAAT
1 CTGATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
* * * * * *
102764220 CT-ACTATCTTTGATCTACTGTATTGTCAAATACAGAGATGCCAAAT
1 CTGA-TATCTTCGATCTGCTCT-CTGACAAATACAGAGACGCCAAAT
* * * * *
102764266 C----ATCTTAGATTTGCT-TCAG-CGTAAATAC-GTGAAAGCCAAAT
1 CTGATATCTTCGATCTGCTCTCTGAC--AAATACAGAG-ACGCCAAAT
* * * * *
102764307 CTGCTATGTCTCCGATCTACTCCCTGAC-AATACAGGGACGCCAAAT
1 CTG--ATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
* * * *
102764353 CTGCTATCTTCGATCTGCTCTCTGACAAATATAGATACACCAAAT
1 CTGATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
* *
102764398 CTGCTATCTTTGATCTGCTCTCTGAC-AATACAGAGACGCCAAAT
1 CTGATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
102764442 C
1 C
102764443 ATCTTAGATT
Statistics
Matches: 345, Mismatches: 72, Indels: 54
0.73 0.15 0.11
Matches are distributed among these distances:
39 1 0.00
40 3 0.01
41 16 0.05
42 12 0.03
43 16 0.05
44 145 0.42
45 97 0.28
46 41 0.12
47 11 0.03
48 2 0.01
49 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (45 bp):
CTGATATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAAT
Found at i:102764279 original size:176 final size:172
Alignment explanation
Indices: 102763988--102764505 Score: 513
Period size: 176 Copynumber: 2.9 Consensus size: 172
102763978 TCGAACACAA
* *
102763988 AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC-AATACAGAGAAGCCAAATCTGA-TGTC
1 AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAATCT-ACTATC
* * * ** *
102764051 TTTGATCTGCTCCTTGACAATACAGGGATGCCAAATCAGCTTCTTGGATTTGCTCCTCGTCGAAT
65 TTTGATCTGCT-TTTGACAATACAGAGATGCCAAATCA---TCTTAGATTTGCTCAGCGT-AAAT
** * * * * *
102764116 AC-AAAGATGTTAAATCTACTA-TCTCTGATTTGCTCTCTAACCATACAG
125 ACGAAA-A-GCCAAATCTACTAGTCTCCGATCTACTCCCTAACAATACAG
* * * *
102764164 AGATGTCAAATCTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTACTATCT
1 AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAATCTACTATCT
* *
102764229 TTGATCTACTGTATTGTCAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAATAC
66 TTGATCTGCT-T-TTGAC-AATACAGAGATGCCAAATCATCTTAGATTTGC-TCAGCGTAAATAC
* * *
102764294 GTGAAAGCCAAATCTGCTATGTCTCCGATCTACTCCCTGACAATACAG
127 G-AAAAGCCAAATCTACTA-GTCTCCGATCTACTCCCTAACAATACAG
* * * * *
102764342 GGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATATAGATACACCAAATCTGCTATCT
1 AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAATCTACTATCT
* * * *
102764407 TTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGT
66 TTGATCTGCT-TTTGACAATACAGAGATGCCAAATCATCTTAGATTTGC-TCAGCGTAAATACG-
* * * *
102764472 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCC
128 AAAAGCCAAATCTACTA-GTCTCCGATCTACTCC
102764506 TTGTAAAAAT
Statistics
Matches: 290, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
176 137 0.47
177 41 0.14
178 93 0.32
179 19 0.07
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (172 bp):
AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATACAGAGACGCCAAATCTACTATCT
TTGATCTGCTTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTCAGCGTAAATACGAAA
AGCCAAATCTACTAGTCTCCGATCTACTCCCTAACAATACAG
Found at i:102764339 original size:87 final size:86
Alignment explanation
Indices: 102764248--102764505 Score: 285
Period size: 89 Copynumber: 2.9 Consensus size: 86
102764238 TGTATTGTCA
*
102764248 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAATACGTGAAAGCCAAATCTGCTA
1 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGC-TAAATACGTGAAAGCCAAATCTGCTA
* *
102764313 TGTCTCCGATCTACTCCCTGAC
65 TGTCTTCGATCTGCTCCCTGAC
* * * *
102764335 AATACAGGGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC-AAATA--TAGATACA-CCAA
1 AATACAGAGACGCCAAA--T-C-ATCTTAGATTTGCT-TCAG-CTAAATACGT-GA-A-AGCCAA
* *
102764396 ATCTGCTA--TCTTTGATCTGCTCTCTGAC
57 ATCTGCTATGTCTTCGATCTGCTCCCTGAC
*
102764424 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCTA
1 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGC-TAAATACGTGAAAGCCAAATCTGCTA
102764489 TGTCTTCGATCTGCTCC
65 TGTCTTCGATCTGCTCC
102764506 TTGTAAAAAT
Statistics
Matches: 139, Mismatches: 16, Indels: 32
0.74 0.09 0.17
Matches are distributed among these distances:
83 1 0.01
84 4 0.03
85 29 0.21
86 3 0.02
87 30 0.22
89 34 0.24
90 3 0.02
91 30 0.22
92 4 0.03
93 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (86 bp):
AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCTAAATACGTGAAAGCCAAATCTGCTAT
GTCTTCGATCTGCTCCCTGAC
Found at i:102764528 original size:176 final size:178
Alignment explanation
Indices: 102764158--102764529 Score: 518
Period size: 176 Copynumber: 2.1 Consensus size: 178
102764148 CTCTCTAACC
* * *
102764158 ATACAGAGATGTCAAATCTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTA
1 ATACAGGGATGCCAAATCTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACACCAAATCTA
* * * * *
102764223 CTATCTTTGATCTACTGTATTGTCAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGT
66 CTATCTTTGATCTACTCTACTGACAAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCAT
* *
102764288 AAATACGTGAAAGCCAAATCTGCTATGTCTCCGATCTACTCCCTGACA
131 AAACACGTGAAAGCCAAATCTGCTATGTCTCCGATCTACTCCCTGAAA
* * * * * *
102764336 ATACAGGGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAAATATAGATACACCAAATCTG
1 ATACAGGGATGCCAAATCTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACACCAAATCTA
*
102764401 CTATCTTTGATCTGCTCT-CTGAC-AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCAT
66 CTATCTTTGATCTACTCTACTGACAAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCAT
* * *
102764464 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAAA
131 AAACACGTGAAAGCCAAATCTGCTATGTCTCCGATCTACTCCCTG--AAA
102764514 ATA-A-GGATGCCAAATC
1 ATACAGGGATGCCAAATC
102764530 ATCTTGGATC
Statistics
Matches: 171, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
176 90 0.53
177 4 0.02
178 77 0.45
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (178 bp):
ATACAGGGATGCCAAATCTGCTATCCTCGATCTGCTCCCTGACAAATACAGAGACACCAAATCTA
CTATCTTTGATCTACTCTACTGACAAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCAT
AAACACGTGAAAGCCAAATCTGCTATGTCTCCGATCTACTCCCTGAAA
Found at i:102764530 original size:87 final size:87
Alignment explanation
Indices: 102764247--102764534 Score: 279
Period size: 87 Copynumber: 3.3 Consensus size: 87
102764237 CTGTATTGTC
* *
102764247 AAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAATACGTGAAAGCCAAATCTGCT
1 AAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAATACGTGAAAGCCAAATCTGCT
* * *
102764312 ATGTCTCCGATCTACTCCCTGA
66 ATGTCTTCGATCTGCTCCTTGA
* * * * * *
102764334 CAATACAGGGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA-AATATA-GAT-ACA-CCA
1 AAATACAGAGACGCCAAA--T-C-ATCTTAGATTTGCT-TCAG-CATAA-ATACG-TGAAAGCCA
*
102764395 AATCTGCTA--TCTTTGATCTGCT-CTCTGA
58 AATCTGCTATGTCTTCGATCTGCTCCT-TGA
* *
102764423 CAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCT
1 AAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAATACGTGAAAGCCAAATCTGCT
102764488 ATGTCTTCGATCTGCTCCTTGTAA
66 ATGTCTTCGATCTGCTCCTTG--A
*
102764512 AAATA-AG-GATGCCAAATCATCTT
1 AAATACAGAGACGCCAAATCATCTT
102764535 GGATCTACTT
Statistics
Matches: 162, Mismatches: 21, Indels: 36
0.74 0.10 0.16
Matches are distributed among these distances:
83 5 0.03
84 8 0.05
85 24 0.15
86 1 0.01
87 45 0.28
88 5 0.03
89 36 0.22
90 1 0.01
91 24 0.15
92 8 0.05
93 5 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (87 bp):
AAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAGCATAAATACGTGAAAGCCAAATCTGCT
ATGTCTTCGATCTGCTCCTTGA
Found at i:102771600 original size:13 final size:13
Alignment explanation
Indices: 102771584--102771609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102771574 TCACTATCCT
102771584 TTCTTCCTATGGC
1 TTCTTCCTATGGC
102771597 TTCTTCCTATGGC
1 TTCTTCCTATGGC
102771610 CGAATATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.15, T:0.46
Consensus pattern (13 bp):
TTCTTCCTATGGC
Found at i:102776920 original size:40 final size:40
Alignment explanation
Indices: 102776861--102777028 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
102776851 TGGAATACAA
* *
102776861 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* *
102776901 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
102776941 CCAGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* *
102776981 CCGGATA-AA-GTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACG--ACTCGCACGAA-TGCCTTCGGGTCTTAGC
*
102777021 CCGAATAT
1 CCGGATAT
102777029 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 106 0.96
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102784747 original size:29 final size:29
Alignment explanation
Indices: 102784712--102784904 Score: 305
Period size: 29 Copynumber: 6.7 Consensus size: 29
102784702 ATAAACGATC
*** *
102784712 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
102784741 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
102784770 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
102784799 TCGCACACCTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
102784828 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
102784857 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
102784886 TTGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
102784905 CCTTCCAAGC
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 153 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:102784815 original size:87 final size:87
Alignment explanation
Indices: 102784712--102784931 Score: 325
Period size: 87 Copynumber: 2.5 Consensus size: 87
102784702 ATAAACGATC
* *
102784712 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
102784777 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * *
102784799 TCGCACACCTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
102784864 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * * *
102784886 TTGCACACTTAGTGCCATAC-CTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATACAATT-TAAGCTCGCACACATAGTGCCA
102784932 ATCTTGTCAC
Statistics
Matches: 119, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 2 0.02
87 117 0.98
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:102784921 original size:58 final size:58
Alignment explanation
Indices: 102784714--102784931 Score: 303
Period size: 58 Copynumber: 3.8 Consensus size: 58
102784704 AAACGATCTC
*** *
102784714 GCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
* * *
102784772 GCACACTTAGTGCCATATAATTTAAGTTCGCACACCTAGTGCCATATAATTTAAGTTC
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
* *
102784830 GCACACTTAGTGCCATATAATTTAAGTTTGCACACTTAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
** * *
102784888 GCACACTTAGTGCCATA-CCTTCCAAGCCCGCACACTTAGTGCCA
1 GCACACTTAGTGCCATATAATT-TAAGCTCGCACACTTAGTGCCA
102784932 ATCTTGTCAC
Statistics
Matches: 144, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
57 2 0.01
58 142 0.99
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (58 bp):
GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
Found at i:102786011 original size:31 final size:31
Alignment explanation
Indices: 102785973--102786034 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
102785963 TTCAAGAGTG
102785973 GCATAAAACATACCTTCTTGTATCAAAACAC
1 GCATAAAACATACCTTCTTGTATCAAAACAC
102786004 GCATAAAACATACCTTCTTGTATCAAAACAC
1 GCATAAAACATACCTTCTTGTATCAAAACAC
102786035 CTTAGTCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (31 bp):
GCATAAAACATACCTTCTTGTATCAAAACAC
Found at i:102788200 original size:40 final size:40
Alignment explanation
Indices: 102788155--102788322 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
102788145 CGGAATACAA
102788155 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
102788195 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * **
102788235 CCAGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
102788275 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
102788315 CCGGATAT
1 CCGGATAT
102788323 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 106 0.96
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:102788295 original size:80 final size:80
Alignment explanation
Indices: 102788171--102788322 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 80
102788161 ATAACCACAC
* *
102788171 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGCC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
102788236 CAGATATAACAACTT
66 CAGATATAACAACTT
* *
102788251 GCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATGCCTTCGGGTATTAA
*
102788314 CCCGGATAT
64 CCCAGATAT
102788323 CATTCAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 62 0.95
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACC
CAGATATAACAACTT
Found at i:102793506 original size:40 final size:40
Alignment explanation
Indices: 102793413--102793589 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
102793403 AAGCCAAGTA
* * * *
102793413 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
102793451 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
102793491 CCTTCAGGACTTAGCCCGGATATAGTAGCTCGTAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
102793531 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
102793571 CCTTCGGAACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
102793590 TTATCATCTG
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
38 12 0.10
39 17 0.15
40 87 0.75
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:102798842 original size:47 final size:49
Alignment explanation
Indices: 102798791--102798996 Score: 145
Period size: 47 Copynumber: 4.2 Consensus size: 49
102798781 ACAAAAAAGA
* * *
102798791 TGTGATATGTGCTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 TGTGATATGTGCTTCCGTATAAGACCATAGATGGGCTATGGCATC-G-ATG
* **
102798842 ATGTGATAATGTGCTTTCGTATAAGACCATTTATGGGAC-ATGGCATC-A-G
1 -TGTGAT-ATGTGCTTCCGTATAAGACCATAGATGGG-CTATGGCATCGATG
* * * * * *
102798891 TATTATATGTGCTTCTGTGTAAGACCATATATGGGATATGGCATC-A-G
1 TGTGATATGTGCTTCCGTATAAGACCATAGATGGGCTATGGCATCGATG
* * * * * * * *
102798938 TGTGATATGTG-ATACGTGTAAGACCATGGCTGAGCTATGGCTTCGGTG
1 TGTGATATGTGCTTCCGTATAAGACCATAGATGGGCTATGGCATCGATG
102798986 TGTGATATGTG
1 TGTGATATGTG
102798997 ACTATGTACA
Statistics
Matches: 124, Mismatches: 25, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
46 24 0.19
47 44 0.35
48 16 0.13
49 1 0.01
52 6 0.05
53 32 0.26
54 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.33
Consensus pattern (49 bp):
TGTGATATGTGCTTCCGTATAAGACCATAGATGGGCTATGGCATCGATG
Found at i:102798885 original size:53 final size:51
Alignment explanation
Indices: 102798789--102798943 Score: 151
Period size: 47 Copynumber: 3.1 Consensus size: 51
102798779 TGACAAAAAA
** **
102798789 GATGTGATATGTGCTCCCGTATAAGACCATAGCTGGG-CTATGGCATCGGTGT
1 GATGTGATATGTGCTTTCGTATAAGACCATATATGGGAC-ATGGCATC-GTGT
* *
102798841 GATGTGATAATGTGCTTTCGTATAAGACCATTTATGGGACATGGCATC-AGT
1 GATGTGAT-ATGTGCTTTCGTATAAGACCATATATGGGACATGGCATCGTGT
* *
102798892 -AT-T-ATATGTGC-TTCTGTGTAAGACCATATATGGGATATGGCATCAGTGT
1 GATGTGATATGTGCTTTC-GTATAAGACCATATATGGGACATGGCATC-GTGT
102798941 GAT
1 GAT
102798944 ATGTGATACG
Statistics
Matches: 87, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
46 3 0.03
47 32 0.37
48 2 0.02
49 3 0.03
50 4 0.05
51 2 0.02
52 8 0.09
53 32 0.37
54 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
GATGTGATATGTGCTTTCGTATAAGACCATATATGGGACATGGCATCGTGT
Found at i:102801995 original size:127 final size:127
Alignment explanation
Indices: 102801858--102802141 Score: 442
Period size: 127 Copynumber: 2.2 Consensus size: 127
102801848 CCCATCATGG
* *
102801858 TAGGGCACGATTCCTTGAATTTCCAAACATTGAACATTGCCTTGCTTTAGAATTTAGAAAACACG
1 TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAAAACACG
102801923 AGTGAAATTCAAAAGAAATATTCGATTATTTTGAACAAACGGGAAATCAAAACCCAGCACGA
66 AGTGAAATTCAAAAGAAATATTCGATTATTTTGAACAAACGGGAAATCAAAACCCAGCACGA
* * * * *
102801985 TAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTGTCTTGTTTTAAAATTTGGGAAACACG
1 TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAAAACACG
* * * *
102802050 AGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCCAGCACGG
66 AGTGAAATTCAAAAGAAATATTCGATTATTTTGAACAAACGGGAAATCAAAACCCAGCACGA
* * *
102802112 TAGGGCACAATTCCTCGAGTTCCCAAACAT
1 TAGGGCACGATTCCTCGAATTTCCAAACAT
102802142 CAATCATTAC
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
127 142 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (127 bp):
TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTTTAAAATTTAGAAAACACG
AGTGAAATTCAAAAGAAATATTCGATTATTTTGAACAAACGGGAAATCAAAACCCAGCACGA
Found at i:102805444 original size:25 final size:24
Alignment explanation
Indices: 102805416--102805519 Score: 73
Period size: 25 Copynumber: 3.9 Consensus size: 24
102805406 AAAGTTTACA
*
102805416 ACAATAATATAAAATAATGATATGT
1 ACAAAAATATAAAATAAT-ATATGT
*
102805441 ACAAAAATATATATATATATACATATGT
1 ACAAAAATATA-A-A-ATA-ATATATGT
* * *
102805469 ACATAAAATATACACTAATATATAT
1 ACA-AAAATATAAAATAATATATGT
102805494 ACATAATATATATAAAATACATATAT
1 ACA-AA-A-ATATAAAATA-ATATAT
102805520 ATATATATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
25 22 0.35
26 4 0.06
27 10 0.16
28 18 0.29
29 9 0.14
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.34
Consensus pattern (24 bp):
ACAAAAATATAAAATAATATATGT
Found at i:102805454 original size:2 final size:2
Alignment explanation
Indices: 102805447--102805530 Score: 59
Period size: 2 Copynumber: 43.5 Consensus size: 2
102805437 ATGTACAAAA
* * * * *
102805447 AT AT AT AT AT AT AT AC AT AT GT AC AT A- AA AT AT AC ACT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * *
102805488 AT AT AT AC AT A- AT AT AT AT A- AA AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102805528 AT A
1 AT A
102805531 CGTATTAGAA
Statistics
Matches: 63, Mismatches: 14, Indels: 10
0.72 0.16 0.11
Matches are distributed among these distances:
1 4 0.06
2 58 0.92
3 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (2 bp):
AT
Found at i:102805506 original size:15 final size:16
Alignment explanation
Indices: 102805447--102805524 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 16
102805437 ATGTACAAAA
*
102805447 ATATATATATATATAC
1 ATATATATATAAATAC
* *
102805463 ATATGTACATAAAATATAC
1 ATA--TATATATAA-ATAC
*
102805482 ACTAATATATATACATA-
1 A-T-ATATATATAAATAC
102805499 ATATATATA-AAATAC
1 ATATATATATAAATAC
102805514 ATATATATATA
1 ATATATATATA
102805525 TATATACGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
14 4 0.08
15 16 0.33
16 5 0.10
17 1 0.02
18 9 0.19
19 11 0.23
20 1 0.02
21 1 0.02
ACGTcount: A:0.54, C:0.08, G:0.01, T:0.37
Consensus pattern (16 bp):
ATATATATATAAATAC
Found at i:102805866 original size:11 final size:11
Alignment explanation
Indices: 102805833--102805873 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
102805823 AAATCATTTT
102805833 GAAGAGAGAAA
1 GAAGAGAGAAA
*
102805844 GAA-A-AAAAA
1 GAAGAGAGAAA
*
102805853 GAAGGGAGAAA
1 GAAGAGAGAAA
102805864 GAAGAGAGAA
1 GAAGAGAGAA
102805874 GGGATGGGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:102807138 original size:30 final size:30
Alignment explanation
Indices: 102807102--102807160 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
102807092 TTTGAAAAAT
102807102 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
102807132 AGAAATTAAAAAGCTCAACTCACCTCTCG
1 AGAAATTAAAAAGCTCAACTCAACTCTCG
102807161 TAATATGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:102807198 original size:87 final size:84
Alignment explanation
Indices: 102807062--102807219 Score: 244
Period size: 87 Copynumber: 1.8 Consensus size: 84
102807052 GACTAGAGGT
*
102807062 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGACTCAACTCAACT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAACT
102807127 CTCGCAGAAATTAAAAAGC
66 CTCGCAGAAATTAAAAAGC
* * *
102807146 TCAACTCACCTCTCGTAATATGAGTTGAATTTTTTTGAAAAACAGAAATTAAAAGGCTTAACTCA
1 TCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
*
102807211 CCTCTCGCA
63 ACTCTCGCA
102807220 ACATGAGTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
84 26 0.39
85 1 0.02
87 39 0.59
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (84 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAACT
CTCGCAGAAATTAAAAAGC
Found at i:102807226 original size:57 final size:55
Alignment explanation
Indices: 102807131--102807252 Score: 165
Period size: 57 Copynumber: 2.2 Consensus size: 55
102807121 TCAACTCTCG
* *
102807131 CAGAAATTAAAAAGCTCAACTCACCTCTCGTAATATGAGTTGAATTTTTTTGAAA-AA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTG-A--TTTTTGAAACAA
* *
102807188 CAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
*
102807243 CAAAAATTAA
1 CAGAAATTAA
102807253 GAATACCTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 9 0.15
55 11 0.19
56 1 0.02
57 38 0.64
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (55 bp):
CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
Found at i:102807585 original size:73 final size:72
Alignment explanation
Indices: 102807492--102807681 Score: 256
Period size: 72 Copynumber: 2.6 Consensus size: 72
102807482 ATTAAAAGGT
* * * * * * * *
102807492 TCAACCCACCTCTCGCAATATAAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTAGCAATATGAGTTGATT-TTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
102807557 CCTGAGGC
65 CCTGAGGC
**
102807565 TCAACTCACCTCTAGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGC
102807629 CCTGAGGC
65 CCTGAGGC
*
102807637 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAAT
1 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
102807682 AAAAAGGCTT
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.03
72 70 0.69
73 29 0.28
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (72 bp):
TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGCC
CTGAGGC
Found at i:102808023 original size:76 final size:77
Alignment explanation
Indices: 102807864--102808009 Score: 231
Period size: 76 Copynumber: 1.9 Consensus size: 77
102807854 TTGAAAAACG
* *
102807864 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTT
102807929 TTTTTTGACAACA
65 TTTTTTGACAACA
* * *
102807942 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
102808006 TTTT
66 TTTT
102808010 GAAAGGCAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 41 0.65
78 22 0.35
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (77 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
TTTTTGACAACA
Found at i:102808086 original size:169 final size:167
Alignment explanation
Indices: 102807801--102808517 Score: 1125
Period size: 169 Copynumber: 4.2 Consensus size: 167
102807791 AAAAATTAAA
* ** *
102807801 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAA
* *
102807866 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTT
66 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--TTT
102807931 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
129 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
102807970 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTTGAAAAACGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA-TTGAAAAACGA
* *
102808034 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
65 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
* * * * *
102808098 TTTGAAAGACAGAAATTGAAAATAGCTCAGTGCGTGAGCC-A
130 TTTGACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTG
*
102808139 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTTGAAAGGCAGAAATTGAAAAACG
*
102808204 AAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
64 AAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA--T
*
102808269 TTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
127 TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
102808310 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAA-TTGAAAAACGA
* * *
102808375 AAATTGAAAATACCTCGACGTGTGACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
65 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
*
102808440 TTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTG
130 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
102808478 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
102808518 AAAATACCTC
Statistics
Matches: 505, Mismatches: 30, Indels: 27
0.90 0.05 0.05
Matches are distributed among these distances:
166 9 0.02
167 19 0.04
168 100 0.20
169 153 0.30
170 72 0.14
171 105 0.21
172 20 0.04
173 19 0.04
174 8 0.02
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (167 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAA
AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
Found at i:102808111 original size:91 final size:89
Alignment explanation
Indices: 102807943--102808272 Score: 321
Period size: 91 Copynumber: 3.7 Consensus size: 89
102807933 TTGACAACAG
*
102807943 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
102808008 TTGAAAGGCAGAAATTTGAAAAACGA
65 TTGAAAGACAGAAA-TTGAAAAACGA
* *
102808034 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
102808098 TTTGAAAGACAGAAATT-------GA
64 TTTGAAAGACAGAAATTGAAAAACGA
** * * * *
102808117 AAA-T--AGCT-CAGT--GCGTGAGCC-AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATAC-CTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
*
102808175 TTTTTTTGAAAGGCAGAAATTGAAAAACGA
60 TTTTTTTGAAAGACAGAAATTGAAAAACGA
* * *
102808205 AAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
102808270 TTT
64 TTT
102808273 TTTACAACAG
Statistics
Matches: 195, Mismatches: 19, Indels: 50
0.74 0.07 0.19
Matches are distributed among these distances:
76 31 0.16
77 1 0.01
78 5 0.03
79 1 0.01
80 3 0.02
81 19 0.10
82 1 0.01
83 5 0.03
88 5 0.03
89 1 0.01
90 2 0.01
91 48 0.25
92 1 0.01
93 37 0.19
94 2 0.01
95 33 0.17
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAGACAGAAATTGAAAAACGA
Found at i:102808242 original size:340 final size:339
Alignment explanation
Indices: 102807800--102808517 Score: 1196
Period size: 340 Copynumber: 2.1 Consensus size: 339
102807790 CAAAAATTAA
* *
102807800 AAGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTTTTTTTTGAAAGGCAGAAATTGAAAAAC
1 AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAAC
* * *
102807863 GGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATT
66 GAAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATT
102807928 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
131 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
*
102807993 ATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTGAAAATACCTCGGCGTGT
196 ATGAGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTGAAAATACCTCGACGTGT
*
102808057 GA-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAAA
261 GACT-TGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
* *
102808120 TAGCTCAGTGCGTGAGCC-
324 TACCTCA--GCATG-GCCT
102808138 AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAAC
1 AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAAC
*
102808203 GAAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATT
66 GAAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATT
*
102808268 TTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
131 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
102808333 ATGAGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTGAAAATACCTCGACGTGT
196 ATGAGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTGAAAATACCTCGACGTGT
* * *
102808398 GACTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTA
261 GACTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
*
102808463 CCTCAGCATGTCCT
326 CCTCAGCATGGCCT
* *
102808477 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
1 AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
102808518 AAAATACCTC
Statistics
Matches: 357, Mismatches: 17, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
338 31 0.09
339 45 0.13
340 164 0.46
341 107 0.30
342 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (339 bp):
AAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAAC
GAAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATT
TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTGAAAATACCTCGACGTGT
GACTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
CCTCAGCATGGCCT
Found at i:102808333 original size:76 final size:77
Alignment explanation
Indices: 102808205--102808350 Score: 240
Period size: 76 Copynumber: 1.9 Consensus size: 77
102808195 TGAAAAACGA
*
102808205 AAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCA-GTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
102808270 TTTTTTACAACAG
65 TTTTTTACAACAG
* * *
102808283 AAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
102808347 TTTT
66 TTTT
102808351 GAAAGGCAGA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
76 47 0.73
78 17 0.27
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTTTACAACAG
Found at i:102808556 original size:61 final size:61
Alignment explanation
Indices: 102808461--102808575 Score: 203
Period size: 61 Copynumber: 1.9 Consensus size: 61
102808451 AAATTGAAAT
* *
102808461 TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 TACCTCAGCACGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
*
102808522 TACCTCAGCGCGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TACCTCAGCACGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
102808576 GAAACATACG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (61 bp):
TACCTCAGCACGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
Found at i:102808627 original size:137 final size:135
Alignment explanation
Indices: 102808404--102808651 Score: 363
Period size: 137 Copynumber: 1.8 Consensus size: 135
102808394 GTGTGACTTG
* *** * *
102808404 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTAACTCAG
* *
102808469 CATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAATACCTCAGCGCG
66 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTAAAATACCTCAGCGCG
102808534 TCCTA
131 TCCTA
*
102808539 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACGAAAAATTGACAA-TAACT
1 AGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACA-AC-AAAAATTGA-AATTAACT
* *
102808603 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGATTTGAATTTT
63 CAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
102808652 GAAATAAAAC
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
135 38 0.38
136 2 0.02
137 57 0.58
138 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (135 bp):
AGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTAACTCAG
CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTAAAATACCTCAGCGCG
TCCTA
Found at i:102818770 original size:2 final size:2
Alignment explanation
Indices: 102818763--102818846 Score: 59
Period size: 2 Copynumber: 43.5 Consensus size: 2
102818753 ATGTACAAAA
* * * * *
102818763 AT AT AT AT AT AT AT AT AT AT AC AT AT GT AC AT A- AA AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
102818804 ACT A- AT AT AT AT AC AT A- AT AT AT AT A- AA AT AC AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102818844 AT A
1 AT A
102818847 CGTATTAGAA
Statistics
Matches: 63, Mismatches: 14, Indels: 10
0.72 0.16 0.11
Matches are distributed among these distances:
1 4 0.06
2 58 0.92
3 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (2 bp):
AT
Found at i:102818790 original size:34 final size:33
Alignment explanation
Indices: 102818751--102818846 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 33
102818741 TAAAATAATG
*
102818751 ATATGTACAAAAATATATATATATATATATATA
1 ATATGTACAAAAATATATATATATATATACATA
*
102818784 CATATGTACATAAAATATACACTAATATATATACATA
1 -ATATGTACA-AAAATATATA-T-ATATATATACATA
* * *
102818821 ATATATA-TAAAATACATATATATATA
1 ATATGTACAAAAATATATATATATATA
102818847 CGTATTAGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
32 7 0.13
33 1 0.02
34 17 0.32
35 9 0.17
36 7 0.13
37 12 0.23
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.36
Consensus pattern (33 bp):
ATATGTACAAAAATATATATATATATATACATA
Found at i:102820315 original size:10 final size:10
Alignment explanation
Indices: 102820300--102820325 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
102820290 ATGATAAGAA
102820300 GAGAGAAAAT
1 GAGAGAAAAT
102820310 GAGAGAAAAT
1 GAGAGAAAAT
102820320 GAGAGA
1 GAGAGA
102820326 GATGTGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (10 bp):
GAGAGAAAAT
Found at i:102828901 original size:23 final size:24
Alignment explanation
Indices: 102828870--102828925 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 24
102828860 AGAGAGAATA
102828870 TTATATTAA-A-TAATTATTTAATTT
1 TTATATTAATATTAA-T-TTTAATTT
102828894 TTAT-TTAATATTAATTTTAATTTT
1 TTATATTAATATTAATTTTAA-TTT
102828918 TTATATTA
1 TTATATTA
102828926 CTAAAAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
23 9 0.32
24 13 0.46
25 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATATTAATATTAATTTTAATTT
Found at i:102831612 original size:95 final size:93
Alignment explanation
Indices: 102831505--102831733 Score: 280
Period size: 95 Copynumber: 2.5 Consensus size: 93
102831495 TTTTGCTCCC
***
102831505 TTAAAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTCCCACGCTCGCACTTGCTTTTTAA
1 TTAAAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTCCCACGCTCGCACTTGCTCAATAA
* * *
102831570 ATAAGCGTTAGCTTTTTTTTACTATTTTCA
66 ATAAGCATTA-C-TTTCTTCACTATTTTCA
* * * * * *
102831600 TTAAAAAGTTAATTTTAATCTTACATTGGCTAGAAAACCCTCTCATGCTCGCATTTGCTCAATAA
1 TTAAAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTCCCACGCTCGCACTTGCTCAATAA
*
102831665 ATAAGTATTACTTTCTTCACTATTTTCA
66 ATAAGCATTACTTTCTTCACTATTTTCA
* * * *
102831693 TT-AAAAGTTTATTTTAATCCAATATTGACTAGAGAACACTC
1 TTAAAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTC
102831734 TTATATCTCA
Statistics
Matches: 114, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
92 32 0.28
93 17 0.15
94 1 0.01
95 64 0.56
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (93 bp):
TTAAAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTCCCACGCTCGCACTTGCTCAATAA
ATAAGCATTACTTTCTTCACTATTTTCA
Found at i:102831758 original size:93 final size:93
Alignment explanation
Indices: 102831508--102831792 Score: 234
Period size: 95 Copynumber: 3.0 Consensus size: 93
102831498 TGCTCCCTTA
* * * * * * ***
102831508 AAAAGTTAATTTTAATCCTACATTGGCTAGAGAACACTCCCACGCTCGCACTT-GCTTTTTAAAT
1 AAAAGTTAATTTTAATCCAACATTGACTAGAAAACACTCTCATGCTCACA-TTAGCTCAATAAAT
* * ** * *
102831572 AAGCGTTAGCTTTTTTTTACTATTTTCATT
65 AAGTGATA-AATTTCTTCACTATTTTCATT
** * * * *
102831602 AAAAAGTTAATTTTAATCTTACATTGGCTAGAAAACCCTCTCATGCTCGCATTTGCTCAATAAAT
1 -AAAAGTTAATTTTAATCCAACATTGACTAGAAAACACTCTCATGCTCACATTAGCTCAATAAAT
* *
102831667 AAGT-ATTACTTTCTTCACTATTTTCATT
65 AAGTGATAAATTTCTTCACTATTTTCATT
* * * * * *
102831695 AAAAGTTTATTTTAATCCAATATTGACTAGAGAACACTCTTATATCTCACATTGAGCT-TATAAA
1 AAAAGTTAATTTTAATCCAACATTGACTAGAAAACACTCTCAT-GCTCACATT-AGCTCAATAAA
*
102831759 TAAGTGATAAATTTCTTCACTAATTTCATT
64 TAAGTGATAAATTTCTTCACTATTTTCATT
102831789 AAAA
1 AAAA
102831793 ATTTTATGTA
Statistics
Matches: 156, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
92 35 0.22
93 34 0.22
94 31 0.20
95 56 0.36
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.39
Consensus pattern (93 bp):
AAAAGTTAATTTTAATCCAACATTGACTAGAAAACACTCTCATGCTCACATTAGCTCAATAAATA
AGTGATAAATTTCTTCACTATTTTCATT
Found at i:102831947 original size:34 final size:34
Alignment explanation
Indices: 102831860--102831930 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
102831850 CATCAACTCA
102831860 TTTGAGAAATTAATTATTTTACAGCGGAAAAATC
1 TTTGAGAAATTAATTATTTTACAGCGGAAAAATC
102831894 TTTGAGAAATTAATTATTTTACAGCGGAAAAATC
1 TTTGAGAAATTAATTATTTTACAGCGGAAAAATC
102831928 TTT
1 TTT
102831931 TCGGAATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (34 bp):
TTTGAGAAATTAATTATTTTACAGCGGAAAAATC
Found at i:102838561 original size:40 final size:40
Alignment explanation
Indices: 102838503--102838770 Score: 376
Period size: 40 Copynumber: 6.7 Consensus size: 40
102838493 ATAACCACAA
* * * *
102838503 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
102838543 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
102838583 GCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
102838623 GCACAAATGCCTTTGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
102838663 GCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
102838703 ACACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AGCAACTC
* *
102838743 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
102838771 TATTATTCAA
Statistics
Matches: 203, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 201 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:102838588 original size:80 final size:80
Alignment explanation
Indices: 102838483--102838770 Score: 427
Period size: 80 Copynumber: 3.6 Consensus size: 80
102838473 TCTTCGGAAT
* ** * ** *
102838483 TTAG-CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCGCAC
102838547 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
102838562 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCGCAC
*
102838627 AAATGCCTTTGGGTC
66 AAATGCCTTCGGGTC
*
102838642 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCACAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCGCAC
102838707 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * *
102838722 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCAGGTCTTAACCCGG
102838771 TATTATTCAA
Statistics
Matches: 192, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
79 4 0.02
80 187 0.97
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAACCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:102846673 original size:32 final size:31
Alignment explanation
Indices: 102846605--102846673 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
102846595 AACCACAAGC
*
102846605 ACAA-TTGCCTTCGGGTCTTAACCCGGGTAT
1 ACAACTTGCCTTCGGGTCTTAACCCGGATAT
*
102846635 AGCAACTTGCCTTCGGGTCTTAGCCCGGATAT
1 A-CAACTTGCCTTCGGGTCTTAACCCGGATAT
102846667 GACAACT
1 -ACAACT
102846674 CGCACAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 1 0.03
31 3 0.09
32 29 0.85
33 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (31 bp):
ACAACTTGCCTTCGGGTCTTAACCCGGATAT
Found at i:102846746 original size:40 final size:40
Alignment explanation
Indices: 102846642--102846858 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
102846632 TATAGCAACT
102846642 TGCCTTCGGGTCTTAGCCCGGATAT-GACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAA
* *
102846682 TGCCTTC-GGTCTTAACCCGAATATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
*
102846721 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
102846761 TGCCTTCGGGTCTTA-CCCGGATATA-CAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
* * *
102846799 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAA
102846839 TGCCTTCGGG-CTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
102846859 GTATCATTCA
Statistics
Matches: 165, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
38 28 0.17
39 64 0.39
40 72 0.44
41 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAA
Found at i:102846824 original size:78 final size:79
Alignment explanation
Indices: 102846642--102846858 Score: 343
Period size: 78 Copynumber: 2.8 Consensus size: 79
102846632 TATAGCAACT
* *
102846642 TGCCTTCGGGTCTTAGCCCGGATATGACAACTCGCACAAATGCCTTC-GGTCTTAACCCGAATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTT-ACCCGGATAT
102846706 AGCAACTCGCACAAA
65 AGCAACTCGCACAAA
102846721 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTACCCGGATATA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTACCCGGATATA
102846786 -CAACTCGCACAAA
66 GCAACTCGCACAAA
* *
102846799 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGG-CTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTA-CCCGG
102846859 GTATCATTCA
Statistics
Matches: 131, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
77 4 0.03
78 64 0.49
79 57 0.44
80 6 0.05
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (79 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTACCCGGATATA
GCAACTCGCACAAA
Found at i:102849466 original size:70 final size:70
Alignment explanation
Indices: 102849347--102849484 Score: 195
Period size: 70 Copynumber: 2.0 Consensus size: 70
102849337 ATATTACATT
* * *
102849347 TTAATTTTAATCCCACATTGACTAAAGAATACTCTCATAACTCATTTCTTCACTATTTTCATTAA
1 TTAATTTTAATCCCACATTAACTAAAGAATACTCTCACAACTCACTTCTTCACTATTTTCATTAA
102849412 AAAAG
66 AAAAG
* * * * * *
102849417 TTAATTTTAATCCTATATTAACTAGAGAATACTTTCACAACTCGCTTCTTTACTATTTTCATTAA
1 TTAATTTTAATCCCACATTAACTAAAGAATACTCTCACAACTCACTTCTTCACTATTTTCATTAA
102849482 AAA
66 AAA
102849485 TTAATATTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.41
Consensus pattern (70 bp):
TTAATTTTAATCCCACATTAACTAAAGAATACTCTCACAACTCACTTCTTCACTATTTTCATTAA
AAAAG
Found at i:102854680 original size:9 final size:9
Alignment explanation
Indices: 102854650--102854710 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
102854640 CTTTTATATA
*
102854650 TATACATTT
1 TATATATTT
102854659 TATATATAATT
1 TATATAT--TT
*
102854670 TATTTATTT
1 TATATATTT
*
102854679 TAAATATTT
1 TATATATTT
*
102854688 TATATATAT
1 TATATATTT
*
102854697 TATTTATTT
1 TATATATTT
102854706 T-TATA
1 TATATA
102854711 AATATTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
8 3 0.07
9 30 0.73
11 8 0.20
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
TATATATTT
Found at i:102854697 original size:20 final size:22
Alignment explanation
Indices: 102854648--102854697 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 22
102854638 TCCTTTTATA
*
102854648 TATATACATTTTATATATAATT
1 TATATATATTTTATATATAATT
*
102854670 TAT-T-TATTTTA-A-ATATTT
1 TATATATATTTTATATATAATT
102854688 TATATATATT
1 TATATATATT
102854698 ATTTATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.33
19 2 0.08
20 10 0.42
21 1 0.04
22 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TATATATATTTTATATATAATT
Found at i:102854702 original size:31 final size:28
Alignment explanation
Indices: 102854655--102854716 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
102854645 ATATATATAC
*
102854655 ATTTTATATATAATTTATTTATTTTAAAT
1 ATTTTATATATAATTTATTT-TTATAAAT
102854684 ATTTTATATATATTATTTATTTTTATAAAT
1 ATTTTATATATA--ATTTATTTTTATAAAT
102854714 ATT
1 ATT
102854717 ATTTATACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (28 bp):
ATTTTATATATAATTTATTTTTATAAAT
Found at i:102854709 original size:19 final size:19
Alignment explanation
Indices: 102854685--102854722 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
102854675 ATTTTAAATA
*
102854685 TTTTATATATATTATTTAT
1 TTTTATAAATATTATTTAT
102854704 TTTTATAAATATTATTTAT
1 TTTTATAAATATTATTTAT
102854723 ACATGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTATAAATATTATTTAT
Found at i:102854758 original size:19 final size:18
Alignment explanation
Indices: 102854736--102854840 Score: 60
Period size: 19 Copynumber: 5.7 Consensus size: 18
102854726 TGTAAAATTA
102854736 TTATATATAATATTTTTAT
1 TTATATAT-ATATTTTTAT
* *
102854755 TTATGTAT-TATTTATCAT
1 TTATATATATATTT-TTAT
102854773 GTTAT-T-TATATTTTATAT
1 -TTATATATATATTTT-TAT
* *
102854791 ATTTTATATATAGCTTTTA-
1 -TTATATATATA-TTTTTAT
102854810 TTATATATTATATATTTTA-
1 TTATATA-TATAT-TTTTAT
102854829 TTATATAT-TATT
1 TTATATATATATT
102854841 CCCTATATTA
Statistics
Matches: 69, Mismatches: 8, Indels: 21
0.70 0.08 0.21
Matches are distributed among these distances:
16 1 0.01
17 10 0.14
18 21 0.30
19 28 0.41
20 6 0.09
21 3 0.04
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATATATATATTTTTAT
Found at i:102854790 original size:47 final size:51
Alignment explanation
Indices: 102854682--102854791 Score: 115
Period size: 47 Copynumber: 2.2 Consensus size: 51
102854672 TTTATTTTAA
102854682 ATATTTTATAT-ATATTATTTATTTTTATAAATATTATTTATACATGTAAAAT
1 ATATTTTATATAATATTATTTA-TTTTAT-AATATTATTTATACATGTAAAAT
* * * **
102854734 -TATTATATATAATATT-TTTA-TTTAT-GTATTATTTAT-CATGTTATTT
1 ATATTTTATATAATATTATTTATTTTATAATATTATTTATACATGTAAAAT
102854780 ATATTTTATATA
1 ATATTTTATATA
102854792 TTTTATATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
46 7 0.14
47 20 0.40
49 5 0.10
51 13 0.26
52 5 0.10
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (51 bp):
ATATTTTATATAATATTATTTATTTTATAATATTATTTATACATGTAAAAT
Found at i:102854793 original size:9 final size:9
Alignment explanation
Indices: 102854779--102854839 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 9
102854769 TCATGTTATT
102854779 TATATTTTA
1 TATATTTTA
102854788 TATATTTTATA
1 TATA-TTT-TA
102854799 TATAGCTTTTA
1 TATA--TTTTA
*
102854810 TTATATATTA
1 -TATATTTTA
102854820 TATATTTTA
1 TATATTTTA
*
102854829 TTATATATTA
1 -TATATTTTA
102854839 T
1 T
102854840 TCCCTATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 13 0.30
10 15 0.35
11 8 0.19
12 7 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (9 bp):
TATATTTTA
Found at i:102854830 original size:12 final size:12
Alignment explanation
Indices: 102854785--102854837 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
102854775 TATTTATATT
102854785 TTATATATTTTA
1 TTATATATTTTA
**
102854797 -TATATAGCTT-
1 TTATATATTTTA
*
102854807 TTAT-TA-TATA
1 TTATATATTTTA
102854817 TTATATATTTTA
1 TTATATATTTTA
102854829 TTATATATT
1 TTATATATT
102854838 ATTCCCTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
9 1 0.03
10 6 0.19
11 13 0.41
12 12 0.38
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATATATTTTA
Done.