Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 355 of 444
Found at i:102854837 original size:7 final size:7
Alignment explanation
Indices: 102854734--102854839 Score: 55
Period size: 7 Copynumber: 15.9 Consensus size: 7
102854724 CATGTAAAAT
102854734 TATTATA
1 TATTATA
*
102854741 TATAATA
1 TATTATA
*
102854748 T-TTTTA
1 TATTATA
*
102854754 T-TTATG
1 TATTATA
*
102854760 TATTATT
1 TATTATA
* *
102854767 TATCATGT
1 TATTAT-A
102854775 TATTTATA
1 TA-TTATA
*
102854783 TTTTATA
1 TATTATA
*
102854790 TATTTTA
1 TATTATA
102854797 TA-TATA
1 TATTATA
**
102854803 GCTT-T-
1 TATTATA
102854808 TATTATA
1 TATTATA
102854815 TATTATA
1 TATTATA
102854822 TATT-T-
1 TATTATA
102854827 TATTATA
1 TATTATA
102854834 TATTAT
1 TATTAT
102854840 TCCCTATATT
Statistics
Matches: 74, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
5 6 0.08
6 15 0.20
7 46 0.62
8 4 0.05
9 3 0.04
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (7 bp):
TATTATA
Found at i:102854872 original size:7 final size:7
Alignment explanation
Indices: 102854858--102854893 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
102854848 TTATCTTCAT
102854858 TTTATTA
1 TTTATTA
*
102854865 TATATTA
1 TTTATTA
102854872 TTTTATTA
1 -TTTATTA
102854880 TTTATTA
1 TTTATTA
102854887 TTTATTA
1 TTTATTA
102854894 GTACATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:102854884 original size:19 final size:19
Alignment explanation
Indices: 102854732--102854888 Score: 56
Period size: 19 Copynumber: 7.7 Consensus size: 19
102854722 TACATGTAAA
*
102854732 ATTA-TTATATATAATATTT
1 ATTATTTATATATTAT-TTT
*
102854751 -TTATTTATGTATTA-TTT
1 ATTATTTATATATTATTTT
* *
102854768 ATCATGTTATTTA-TATTTT
1 ATTAT-TTATATATTATTTT
102854787 ATATATTT-TATATATAGCTTTT
1 AT-TATTTATATAT-TA--TTTT
102854809 ATTATATATTATATATTTTATTATAT
1 A-T-TAT-TTATATA--TTATT-T-T
** *
102854835 ATTATTCCCTATATTATCTTC
1 ATTATT-TATATATTAT-TTT
*
102854856 ATTTTATTATATATTATTTT
1 ATTAT-TTATATATTATTTT
102854876 ATTATTTAT-TATT
1 ATTATTTATATATT
102854889 TATTAGTACA
Statistics
Matches: 105, Mismatches: 14, Indels: 39
0.66 0.09 0.25
Matches are distributed among these distances:
17 3 0.03
18 15 0.14
19 25 0.24
20 10 0.10
21 12 0.11
22 11 0.10
23 7 0.07
24 11 0.10
25 6 0.06
26 4 0.04
27 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTATTTATATATTATTTT
Found at i:102855038 original size:17 final size:17
Alignment explanation
Indices: 102855018--102855079 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
102855008 TTTAATATAT
102855018 TATTATTTTTATAAATA
1 TATTATTTTTATAAATA
* *
102855035 TATTAAGTTTTATATCATA
1 TATT-ATTTTTATA-AATA
* *
102855054 TAGTATTTTATATATATA
1 TATTATTTT-TATAAATA
102855072 TATATATT
1 TAT-TATT
102855080 AATCGTTTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 4 0.11
18 17 0.49
19 14 0.40
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (17 bp):
TATTATTTTTATAAATA
Found at i:102855054 original size:19 final size:16
Alignment explanation
Indices: 102855006--102855072 Score: 64
Period size: 16 Copynumber: 4.0 Consensus size: 16
102854996 GTTTTGTTCC
*
102855006 TATTTAATATAT-TAT
1 TATTTTATATATATAT
*
102855021 TATTTTTATAAATATAT
1 TA-TTTTATATATATAT
*
102855038 TAAGTTTTATATCATATAG
1 T-A-TTTTATAT-ATATAT
102855057 TATTTTATATATATAT
1 TATTTTATATATATAT
102855073 ATATATTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
15 2 0.05
16 13 0.31
17 12 0.29
18 9 0.21
19 6 0.14
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (16 bp):
TATTTTATATATATAT
Found at i:102856937 original size:28 final size:28
Alignment explanation
Indices: 102856897--102856952 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
102856887 ATCAATAAGT
102856897 AAACATTTTTCATCTTGGCCATTTTGCA
1 AAACATTTTTCATCTTGGCCATTTTGCA
102856925 AAACATTTTTCATCTTGGCCATTTTGCA
1 AAACATTTTTCATCTTGGCCATTTTGCA
102856953 CATTTGATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (28 bp):
AAACATTTTTCATCTTGGCCATTTTGCA
Found at i:102857335 original size:19 final size:21
Alignment explanation
Indices: 102857305--102857351 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
102857295 TATTCTATTT
*
102857305 TTTAT-TGTATGTAT-ACTATA
1 TTTATATG-ATGTATCAATATA
102857325 -TTATATGATGTATCAATATA
1 TTTATATGATGTATCAATATA
102857345 TTTATAT
1 TTTATAT
102857352 AAATGCTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 10 0.43
20 7 0.30
21 6 0.26
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (21 bp):
TTTATATGATGTATCAATATA
Found at i:102860508 original size:43 final size:43
Alignment explanation
Indices: 102860350--102860498 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 43
102860340 TGTGATTTCG
* ** * *
102860350 TGTAAGACCACGTCTAGGATGTTGGCATCGAT-TTGAGATTGACA
1 TGTAAGACCACGTCTGGGACATTGACATCGATATT-TGATT-ACA
* * * * * *
102860394 TGTAAAACTATGTCTGGGACATCGACATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGACATCGATATTTGATTACA
** * * *
102860436 TGTAAGACCTTGTTTGGGACAATGACATTGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGACATCGATATTTGATTACA
102860479 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTGGGAC
102860499 GTTGGCATTG
Statistics
Matches: 80, Mismatches: 23, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
42 24 0.30
43 32 0.40
44 24 0.30
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGACATCGATATTTGATTACA
Found at i:102860681 original size:2 final size:2
Alignment explanation
Indices: 102860669--102860707 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
102860659 ATTTGTGGAC
102860669 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102860708 GAATTATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102872157 original size:46 final size:46
Alignment explanation
Indices: 102872107--102872280 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
102872097 TGGTTGAGCA
102872107 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102872153 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
102872198 CATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
102872245 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102872281 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 21
0.78 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 33 0.30
46 53 0.49
47 7 0.06
49 4 0.04
50 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:102872219 original size:92 final size:92
Alignment explanation
Indices: 102872104--102872273 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 92
102872094 GGATGGTTGA
*
102872104 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAACTCGTTGAGT
102872169 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
102872197 GCATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAGCTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAACTCGTTGAGTT
102872261 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
102872274 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 28 0.37
92 40 0.53
93 7 0.09
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:102874058 original size:35 final size:35
Alignment explanation
Indices: 102874012--102874082 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
102874002 ACTAAGTGAC
102874012 TATGCATCACCAACTCTAGATGCCATCTGAGGAAA
1 TATGCATCACCAACTCTAGATGCCATCTGAGGAAA
102874047 TATGCATCACCAACTCTAGATGCCATCTGAGGAAA
1 TATGCATCACCAACTCTAGATGCCATCTGAGGAAA
102874082 T
1 T
102874083 GTTGATAGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (35 bp):
TATGCATCACCAACTCTAGATGCCATCTGAGGAAA
Found at i:102875688 original size:15 final size:15
Alignment explanation
Indices: 102875668--102875696 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
102875658 ATGTTTCACA
102875668 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
102875683 CACCGTGTTATCAA
1 CACCGTGTTATCAA
102875697 GCAATAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:102882431 original size:46 final size:45
Alignment explanation
Indices: 102882381--102882555 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
102882371 TGGTTGAGCA
102882381 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
102882427 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
102882473 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
102882519 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102882556 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:102882535 original size:92 final size:92
Alignment explanation
Indices: 102882378--102882548 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
102882368 GGATGGTTGA
* *
102882378 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102882443 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
102882470 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102882535 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
102882549 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:102885754 original size:40 final size:40
Alignment explanation
Indices: 102885709--102885876 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
102885699 CGGAATATAA
102885709 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102885749 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102885789 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
102885829 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
102885869 CCGGATAT
1 CCGGATAT
102885877 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102885859 original size:80 final size:80
Alignment explanation
Indices: 102885725--102885874 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
102885715 ATAATCACGT
*
102885725 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
102885789 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
102885805 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
102885868 CCCGGAT
64 CCCGGAT
102885875 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:102893756 original size:40 final size:40
Alignment explanation
Indices: 102893711--102893878 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
102893701 CGGAATATAA
102893711 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102893751 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
102893791 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
102893831 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
102893871 CCGGATAT
1 CCGGATAT
102893879 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102902214 original size:21 final size:21
Alignment explanation
Indices: 102902175--102902213 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
102902165 TAACTAAATC
*
102902175 GAGAACCTTCGAAAATTTTGG
1 GAGAACCTTAGAAAATTTTGG
102902196 GAGAA-CTTAGAAAATTTT
1 GAGAACCTTAGAAAATTTT
102902214 TCCATGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (21 bp):
GAGAACCTTAGAAAATTTTGG
Found at i:102904260 original size:49 final size:48
Alignment explanation
Indices: 102904151--102904464 Score: 179
Period size: 49 Copynumber: 6.6 Consensus size: 48
102904141 CATCAAAGTT
* * *
102904151 GATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAGGC
* * * *
102904199 TAGTGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATTTATAG-GTGTC
1 GA-TGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAG-G-C
* * * * * **
102904249 GATGCCATGTCCCAGACAGATCTTACATTGA--CACACA-AGA-AGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAGGC
* * *
102904293 GATGCCATGTCCCAGACAGGTCTTTACACT-AGCT-TGTATATTTTGAGGC
1 GATGCCATGTCCCAGACAGGTC-TTACACTGA-CTCT-CATATATAGAGGC
** * * *
102904342 TGATG-CATGTCCCAGACATATCTTACACT-AGCT-TGTATATCTTGAGGCC
1 -GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATAGAGG-C
* * * * *
102904391 GAT-ACATGTCCCAGACATGTCTTACACTGGCTGTCATA-ATATG-GCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATA-GAGGC
*
102904437 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
102904465 AGCGCACATA
Statistics
Matches: 211, Mismatches: 37, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
44 22 0.10
45 6 0.03
46 31 0.15
47 7 0.03
48 58 0.27
49 81 0.38
50 6 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAGGC
Found at i:102904366 original size:142 final size:145
Alignment explanation
Indices: 102904106--102904370 Score: 339
Period size: 142 Copynumber: 1.8 Consensus size: 145
102904096 AGATGCCGAC
* * * *
102904106 GCCATGTCCCAGACATGGTCTTATATTGGCTAGCACATCAAAGTTGATGCCATGTCCCAGATAGG
1 GCCATGTCCCAGACATGATCTTACATTGACTAGCACA-CAAAGTTGATGCCATGTCCCAGACAGG
* *
102904171 TCTTACACTGACTTTCATATATCGAGGCTAGTGCCGTGTCCCAGACAGGTCTTACACTGGCTCTC
65 TCTTACACTGACTTTCATATATCGAGGCTAGTGCCATGTCCCAGACAGATCTTACACTGGCTCTC
102904236 ATTTATAGGTGTCGAT
130 ATTTATAGGTGTCGAT
102904252 GCCATGTCCCAGACA-GATCTTACATTGAC-A-CACA-AGAAGTTGATGCCATGTCCCAGACAGG
1 GCCATGTCCCAGACATGATCTTACATTGACTAGCACACA-AAGTTGATGCCATGTCCCAGACAGG
* * *
102904313 TCTTTACACT-AGCTTGT-ATATTTTGAGGCT-GATG-CATGTCCCAGACATATCTTACACT
65 TC-TTACACTGA-CTT-TCATATATCGAGGCTAG-TGCCATGTCCCAGACAGATCTTACACT
102904371 AGCTTGTATA
Statistics
Matches: 105, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
141 1 0.01
142 49 0.47
143 27 0.26
144 2 0.02
145 11 0.10
146 15 0.14
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (145 bp):
GCCATGTCCCAGACATGATCTTACATTGACTAGCACACAAAGTTGATGCCATGTCCCAGACAGGT
CTTACACTGACTTTCATATATCGAGGCTAGTGCCATGTCCCAGACAGATCTTACACTGGCTCTCA
TTTATAGGTGTCGAT
Found at i:102904371 original size:48 final size:48
Alignment explanation
Indices: 102904293--102904467 Score: 230
Period size: 48 Copynumber: 3.6 Consensus size: 48
102904283 ACAAGAAGTT
* *
102904293 GATGCCATGTCCCAGACAGGTCTTTACACTAGCTTGTATATTTTGAGGCT
1 GATG-CATGTCCCAGACATGTC-TTACACTAGCTTGTATATTTTGAGGCC
* *
102904343 GATGCATGTCCCAGACATATCTTACACTAGCTTGTATATCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATTTTGAGGCC
* * * *
102904391 GATACATGTCCCAGACATGTCTTACACTGGC-TGTCATAATAT--GGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGT-ATATTTTGAGGCC
102904437 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
102904468 GCACATATCA
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 33 0.29
47 3 0.03
48 57 0.51
49 15 0.13
50 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATTTTGAGGCC
Found at i:102904476 original size:94 final size:96
Alignment explanation
Indices: 102904298--102904476 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 96
102904288 AAGTTGATGC
* * *
102904298 CATGTCCCAGACAGGTCTTTACACTAGCTTGTATATTTTGAGGCTGATGCATGTCCCAGACATAT
1 CATGTCCCAGACAGGTCTTTACACTAGCTTGTATAATAT-AGGCCGATGCATGTCCCAGACATAT
****
102904363 CTTACACTAGCTTGTATATCTTGAGGCCGATA
65 CTTACACTAGCGCACATATCTTGAGGCCGATA
* * *
102904395 CATGTCCCAGACATGTC-TTACACTGGC-TGTCATAATAT-GGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAGGTCTTTACACTAGCTTGT-ATAATATAGGCCGATGCATGTCCCAGACATAT
102904457 CTTACACTAGCGCACATATC
65 CTTACACTAGCGCACATATC
102904477 ACCCAATGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
94 38 0.54
95 3 0.04
96 14 0.20
97 16 0.23
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (96 bp):
CATGTCCCAGACAGGTCTTTACACTAGCTTGTATAATATAGGCCGATGCATGTCCCAGACATATC
TTACACTAGCGCACATATCTTGAGGCCGATA
Found at i:102906673 original size:20 final size:20
Alignment explanation
Indices: 102906625--102906687 Score: 90
Period size: 20 Copynumber: 3.0 Consensus size: 20
102906615 TCAAAATACT
*
102906625 AATAGAGGCACCATAGTGCAA
1 AATAGAGGCACCAAAGTGC-A
102906646 ATATAGAGGCACCAAAGTGCA
1 A-ATAGAGGCACCAAAGTGCA
*
102906667 AATAGAGGCACCGAAGTGCA
1 AATAGAGGCACCAAAGTGCA
102906687 A
1 A
102906688 TCCTGTACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
20 19 0.49
21 3 0.08
22 17 0.44
ACGTcount: A:0.43, C:0.19, G:0.25, T:0.13
Consensus pattern (20 bp):
AATAGAGGCACCAAAGTGCA
Found at i:102924677 original size:28 final size:27
Alignment explanation
Indices: 102924614--102924683 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
102924604 ATAGTGAGTC
102924614 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
102924641 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
102924669 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
102924684 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:102931402 original size:20 final size:20
Alignment explanation
Indices: 102931379--102931416 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
102931369 CACATCCAAA
*
102931379 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
102931399 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
102931417 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:102946343 original size:29 final size:29
Alignment explanation
Indices: 102946311--102946446 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
102946301 ATACCCTTCG
** * *
102946311 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
102946340 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102946369 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
102946398 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102946427 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
102946447 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:102946438 original size:58 final size:58
Alignment explanation
Indices: 102946286--102946445 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
102946276 AATTTAAGCC
* *** * * ** * *
102946286 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
102946344 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
102946402 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
102946446 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:102956920 original size:40 final size:40
Alignment explanation
Indices: 102956792--102956922 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
102956782 TATGCTGGAA
* * * *
102956792 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
102956832 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
102956872 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
102956912 ATTATATCCGG
1 ATTATATCCGG
102956923 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:102958624 original size:17 final size:17
Alignment explanation
Indices: 102958599--102958634 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
102958589 ATGTAGAAGG
*
102958599 TCGGTTCTTCTTCTTCC
1 TCGGCTCTTCTTCTTCC
102958616 TCGGCTCTTCTTCTTCC
1 TCGGCTCTTCTTCTTCC
102958633 TC
1 TC
102958635 CTTTTCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.39, G:0.11, T:0.50
Consensus pattern (17 bp):
TCGGCTCTTCTTCTTCC
Found at i:102962457 original size:42 final size:42
Alignment explanation
Indices: 102962348--102962474 Score: 123
Period size: 42 Copynumber: 3.0 Consensus size: 42
102962338 CTTTGATATG
* * * * *
102962348 AGATATCGTCTAAGATCGTGTCTGGGACACAGGGCCTCGATTT
1 AGATTTCGTGTAAGATCCTGTCTGGGACACA-GGCATCGATCT
*
102962391 GAGATTTACGTGTAAGA-CCATGTCTGGGACATAGGCATCGTATCT
1 -AGATTT-CGTGTAAGATCC-TGTCTGGGACACAGGCATCG-ATCT
* *
102962436 -GATTTCGTGTAAGATCCTGTCTGGGACAGAAGCATCGAT
1 AGATTTCGTGTAAGATCCTGTCTGGGACACAGGCATCGAT
102962475 ACTGAAGTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.38
43 7 0.10
44 12 0.17
45 23 0.32
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (42 bp):
AGATTTCGTGTAAGATCCTGTCTGGGACACAGGCATCGATCT
Found at i:102963443 original size:13 final size:13
Alignment explanation
Indices: 102963425--102963449 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102963415 AATTAAGTAT
102963425 CACACGGCCATGG
1 CACACGGCCATGG
102963438 CACACGGCCATG
1 CACACGGCCATG
102963450 TCTGTTGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (13 bp):
CACACGGCCATGG
Found at i:102979649 original size:17 final size:17
Alignment explanation
Indices: 102979627--102979663 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
102979617 TTTTATTAAG
102979627 TTTTAAGATTCATTCAT
1 TTTTAAGATTCATTCAT
*
102979644 TTTTAAGATTCATTTAT
1 TTTTAAGATTCATTCAT
102979661 TTT
1 TTT
102979664 CCTTTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTTAAGATTCATTCAT
Found at i:102983801 original size:42 final size:42
Alignment explanation
Indices: 102983566--102983802 Score: 137
Period size: 42 Copynumber: 5.6 Consensus size: 42
102983556 CAAAAAAAGT
*
102983566 TACTGGCACACATAGTGCATCATCAGGCA-AGT-C-GAAGCAATTA
1 TACTGGCACATA-AGTGCATCATC-GG-ATA-TACTGAAGCAATTA
* * * * ** *
102983609 TACTGACACACGAGGTGCATCATCAGATGA-ACCAAAGTAATTA
1 TACTGGCACA-TAAGTGCATCATCGGAT-ATACTGAAGCAATTA
* * * * * *
102983652 TACTAGCACACATAGTACATCATC-AATA-AGTTGAAGCAATCA
1 TACTGGCACATA-AGTGCATCATCGGATATA-CTGAAGCAATTA
* *** * * **
102983694 TAGTGGCTTGTAAGTGCATCATCAGATGTA-TCGAAGCAAAGA
1 TACTGGCACATAAGTGCATCATCGGATATACT-GAAGCAATTA
*
102983736 TACTGGCACATAAGTCCATCATCGGATATACTGAAGCAATTA
1 TACTGGCACATAAGTGCATCATCGGATATACTGAAGCAATTA
102983778 TACTGGCACATAAGTGCATCATCGG
1 TACTGGCACATAAGTGCATCATCGG
102983803 CTAAACGAAG
Statistics
Matches: 145, Mismatches: 38, Indels: 23
0.70 0.18 0.11
Matches are distributed among these distances:
41 14 0.10
42 83 0.57
43 47 0.32
44 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (42 bp):
TACTGGCACATAAGTGCATCATCGGATATACTGAAGCAATTA
Found at i:102984389 original size:10 final size:10
Alignment explanation
Indices: 102984374--102984398 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
102984364 AATCCCATAA
102984374 CCAAAATAGT
1 CCAAAATAGT
102984384 CCAAAATAGT
1 CCAAAATAGT
102984394 CCAAA
1 CCAAA
102984399 TATTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (10 bp):
CCAAAATAGT
Found at i:102994292 original size:30 final size:29
Alignment explanation
Indices: 102994257--102994330 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
102994247 CTTCGAGCTC
* *
102994257 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
102994287 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
102994316 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
102994331 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:102995532 original size:20 final size:20
Alignment explanation
Indices: 102995491--102995543 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
102995481 AATGAACACT
*
102995491 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
102995509 TTTTTCTTCATATTCTCTTT-
1 TTTTTCTTCAT-TTCTCTTTG
*
102995529 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
102995544 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:103002189 original size:30 final size:29
Alignment explanation
Indices: 103002154--103002227 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
103002144 CTTCGAGCTC
* *
103002154 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
103002184 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
103002213 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
103002228 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:103003422 original size:19 final size:18
Alignment explanation
Indices: 103003386--103003443 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
103003376 AGAATGAACA
*
103003386 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
103003402 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
103003421 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
103003440 CTTT
1 CTTT
103003444 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:103008050 original size:46 final size:45
Alignment explanation
Indices: 103007997--103008172 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
103007987 TATTTGGGCA
*
103007997 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
103008043 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
103008090 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
103008136 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103008173 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:103008152 original size:93 final size:93
Alignment explanation
Indices: 103007993--103008164 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
103007983 AGGATATTTG
* * *
103007993 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
103008058 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
103008086 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
103008151 TTGATTCCGAGTTC
66 TTGAGTCCGAGTTC
103008165 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:103011386 original size:40 final size:40
Alignment explanation
Indices: 103011340--103011430 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
103011330 TCGGTATCCT
*
103011340 ACACTTAGTACCTCA-TATAGCCGAAGCTATTACAATTCGC
1 ACACTTAGTACCT-ATTATAGCCGAAGCTATTACAAATCGC
* *
103011380 ACACTTAGT-GCTATTTATAGCCGAAGCTATTTCAAATCGC
1 ACACTTAGTACCTA-TTATAGCCGAAGCTATTACAAATCGC
103011420 ACACTTAGTAC
1 ACACTTAGTAC
103011431 TGAAAATAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.05
40 41 0.93
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (40 bp):
ACACTTAGTACCTATTATAGCCGAAGCTATTACAAATCGC
Found at i:103012458 original size:13 final size:13
Alignment explanation
Indices: 103012422--103012459 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
103012412 TCCAAACGAT
103012422 AAAATTATCACAC
1 AAAATTATCACAC
103012435 AAAACTT-TCACAC
1 AAAA-TTATCACAC
103012448 AAAATTATCACA
1 AAAATTATCACA
103012460 TACTGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATTATCACAC
Found at i:103028485 original size:40 final size:40
Alignment explanation
Indices: 103028293--103028478 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
103028283 TCGAATGATG
** * ** *
103028293 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGAGACTATA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
103028333 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
103028373 TCCGGACTATGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
103028413 TTCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
103028454 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTATGTCCCGAAGGCATTTG
103028479 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 113 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:103032295 original size:11 final size:11
Alignment explanation
Indices: 103032274--103032298 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
103032264 TTCATTTTCC
103032274 TTTAATTTTAG
1 TTTAATTTTAG
103032285 TTTAATTTTAG
1 TTTAATTTTAG
103032296 TTT
1 TTT
103032299 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTAATTTTAG
Found at i:103037259 original size:27 final size:28
Alignment explanation
Indices: 103037202--103037271 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
103037192 AAATTTGTAC
**
103037202 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
103037230 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
103037257 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103037272 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:103040483 original size:49 final size:49
Alignment explanation
Indices: 103040407--103040593 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
103040397 TAGCCGAACC
*
103040407 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
103040456 AATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
103040507 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACAT-CGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
103040555 TAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA
103040594 CGTGACCTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 37 0.32
49 39 0.34
50 3 0.03
51 36 0.31
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:103040579 original size:48 final size:49
Alignment explanation
Indices: 103040420--103040593 Score: 221
Period size: 48 Copynumber: 3.5 Consensus size: 49
103040410 CTGGTACGCA
* *
103040420 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACAT-CGACCAATTATTCGGGTACACG
* * * *
103040469 TAGTAGCCTACACTTAGTACTACACA-CGTGATCACAGTT-TTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATC--GA-C-CAATTATTCGGGTACACG
103040520 TAGTAGCCTGCACTTAGTACTACACATCGACCAATTATTC-GGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATCGACCAATTATTCGGGTACACG
103040568 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
103040594 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
47 1 0.01
48 36 0.33
49 31 0.29
50 3 0.03
51 35 0.32
52 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATCGACCAATTATTCGGGTACACG
Found at i:103040587 original size:99 final size:100
Alignment explanation
Indices: 103040412--103040598 Score: 333
Period size: 99 Copynumber: 1.9 Consensus size: 100
103040402 GAACCTATCT
103040412 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
103040477 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
*
103040512 GGTACGCATAGTAGCCTGCACTTAGTACTACACAT-CGACCAATTAT-TCGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT-GGTACACGTAGTAGC
*
103040575 CTGCACTTAGTACTACACACGTGA
65 CTACACTTAGTACTACACACGTGA
103040599 CCTCACAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
98 1 0.01
99 48 0.57
100 35 0.42
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:103043092 original size:30 final size:30
Alignment explanation
Indices: 103043048--103043121 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
103043038 TAAAGATAAC
* *
103043048 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGA-AA
103043078 AA-AAACCCAGAATAAAGAAATCCAAGAAA
1 AAGAAACCCAGAATAAAGAAATCCAAGAAA
*
103043107 AAGAAACCCAAAATA
1 AAGAAACCCAGAATA
103043122 CGATACTATG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 8 0.21
30 31 0.79
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.08
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGAAA
Found at i:103043107 original size:26 final size:24
Alignment explanation
Indices: 103043035--103043108 Score: 64
Period size: 30 Copynumber: 2.9 Consensus size: 24
103043025 ACAAATTACG
103043035 GAATAAAGATAA--CAAG-AAAACC
1 GAATAAAGA-AATCCAAGAAAAACC
103043057 GAATAAAGAAATCCAAGATAGAAAAACCC
1 GAATAAAGAAATCC---A-AGAAAAA-CC
103043086 AGAATAAAGAAATCCAAGAAAAA
1 -GAATAAAGAAATCCAAGAAAAA
103043109 GAAACCCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
21 2 0.05
22 9 0.21
23 1 0.02
26 8 0.19
27 3 0.07
28 4 0.09
29 2 0.05
30 14 0.33
ACGTcount: A:0.64, C:0.14, G:0.14, T:0.09
Consensus pattern (24 bp):
GAATAAAGAAATCCAAGAAAAACC
Found at i:103043111 original size:15 final size:15
Alignment explanation
Indices: 103043061--103043117 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
103043051 AAAACCGAAT
103043061 AAAGAAATCCAAGATA
1 AAAGAAATCCAAGA-A
* *
103043077 GAA-AAA-CCCAGAA
1 AAAGAAATCCAAGAA
103043090 TAAAGAAATCCAAGAA
1 -AAAGAAATCCAAGAA
*
103043106 AAAGAAACCCAA
1 AAAGAAATCCAA
103043118 AATACGATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 1 0.03
14 7 0.21
15 17 0.52
16 8 0.24
ACGTcount: A:0.63, C:0.18, G:0.12, T:0.07
Consensus pattern (15 bp):
AAAGAAATCCAAGAA
Found at i:103046224 original size:51 final size:49
Alignment explanation
Indices: 103046098--103046242 Score: 177
Period size: 51 Copynumber: 2.9 Consensus size: 49
103046088 AGCCGAACCT
* * *
103046098 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATA
* *
103046147 ATCTGGTACA-AGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT-
1 ATCTGGTACACA-TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATA
* *
103046197 TTTTAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
103046243 TCACAATAGT
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 38 0.46
50 4 0.05
51 39 0.47
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATA
Found at i:103055614 original size:17 final size:17
Alignment explanation
Indices: 103055592--103055627 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
103055582 TATCCAAAAA
103055592 CATAGATTCAAAAGTAC
1 CATAGATTCAAAAGTAC
103055609 CATAGATTCAAAAGTAC
1 CATAGATTCAAAAGTAC
103055626 CA
1 CA
103055628 AAGTGATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.22
Consensus pattern (17 bp):
CATAGATTCAAAAGTAC
Found at i:103068896 original size:40 final size:39
Alignment explanation
Indices: 103068841--103069096 Score: 295
Period size: 40 Copynumber: 6.5 Consensus size: 39
103068831 TGGATGATAA
* * *
103068841 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
103068881 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
103068921 CCGGGCTAAGT-CCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
103068960 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
103069000 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
103069040 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
103069079 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
103069097 TACTTGGCTT
Statistics
Matches: 194, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
38 15 0.08
39 53 0.27
40 126 0.65
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:103068973 original size:79 final size:80
Alignment explanation
Indices: 103068841--103069096 Score: 322
Period size: 79 Copynumber: 3.2 Consensus size: 80
103068831 TGGATGATAA
* * * **
103068841 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
103068906 TGCGAGTTATTACAT
66 TGCGAGTTACTACAT
* *
103068921 CCGGGCTAAGT-CCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
103068985 TGCGAGCTACTATAT
66 TGCGAGTTACTACAT
* * *
103069000 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
103069064 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTACAT
* *
103069079 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
103069097 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
78 16 0.10
79 85 0.54
80 55 0.35
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTACAT
Found at i:103069069 original size:119 final size:119
Alignment explanation
Indices: 103068841--103069070 Score: 340
Period size: 119 Copynumber: 1.9 Consensus size: 119
103068831 TGGATGATAA
* *
103068841 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
103068906 TGCGAGTTATTACATCCGGGCTAAGTCCAAAGGCATTTGTGCGAGTTATTACAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCAAAGGCATTTGAGCGAGTTATTACAT
*
103068960 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * *
103069023 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
64 GGTGCGAGTTACTACATCCGGGCTAAGT-CCAAAGGCATTTGAGCGAGT
103069071 AGCTATATCC
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
118 1 0.01
119 90 0.90
120 9 0.09
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCAAAGGCATTTGAGCGAGTTATTACAT
Found at i:103069081 original size:119 final size:119
Alignment explanation
Indices: 103068841--103069096 Score: 333
Period size: 119 Copynumber: 2.2 Consensus size: 119
103068831 TGGATGATAA
* *
103068841 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* * *
103068906 TGCGAGTTATTACATCCGGGCTAAGTCCAAAGGCATTTGTGCGAGTTATTACAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCAAAGGCATTTGAGCGAGTTACTACAT
*
103068960 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * * *
103069023 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
64 GGTGCGAGTTACTACATCCGGGCTAAGT-CCAAAGGCATTTGAGCGAGTTA-CTACAT
* *
103069079 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
103069097 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
118 17 0.14
119 95 0.79
120 9 0.07
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCAAAGGCATTTGAGCGAGTTACTACAT
Found at i:103073841 original size:13 final size:12
Alignment explanation
Indices: 103073812--103073841 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
103073802 TCCTGAGTTG
103073812 ATTTTTGTAGGA
1 ATTTTTGTAGGA
*
103073824 ATTTTTGTAGGC
1 ATTTTTGTAGGA
103073836 ATTTTT
1 ATTTTT
103073842 AACATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (12 bp):
ATTTTTGTAGGA
Found at i:103074334 original size:24 final size:24
Alignment explanation
Indices: 103074283--103074336 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
103074273 TTTAAAATAT
*
103074283 AAATTTATTAATATATATATATAA
1 AAATTTATTAATATATATATAAAA
*
103074307 AAATTTATTAATATATGTA-AAAA
1 AAATTTATTAATATATATATAAAA
103074330 CAAATTT
1 -AAATTT
103074337 TTCGGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATTTATTAATATATATATAAAA
Found at i:103074427 original size:19 final size:20
Alignment explanation
Indices: 103074403--103074448 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
103074393 CATCCAAACA
103074403 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
103074422 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
103074442 CCAGAAA
1 CCAGAAA
103074449 TCATTTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:103077477 original size:17 final size:17
Alignment explanation
Indices: 103077455--103077488 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
103077445 AATAAGAGTT
103077455 ATTTTGTAGGAATTATA
1 ATTTTGTAGGAATTATA
103077472 ATTTTGTAGGAATTATA
1 ATTTTGTAGGAATTATA
103077489 TTTGGTGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (17 bp):
ATTTTGTAGGAATTATA
Found at i:103083649 original size:39 final size:40
Alignment explanation
Indices: 103083526--103083691 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
103083516 AAATTGAATG
* * *
103083526 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
103083565 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
103083605 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
103083644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
103083684 ATATCCGG
1 ATATCCGG
103083692 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:103083658 original size:79 final size:79
Alignment explanation
Indices: 103083526--103083675 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
103083516 AAATTGAATG
*
103083526 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
103083591 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
103083605 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
103083668 ATTTGTGC
64 AATTGTGC
103083676 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:103091592 original size:40 final size:40
Alignment explanation
Indices: 103091526--103091692 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
103091516 AAATTGAATG
* * *
103091526 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
103091565 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
103091605 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
103091645 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
103091685 ATATCCGG
1 ATATCCGG
103091693 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:103097987 original size:29 final size:29
Alignment explanation
Indices: 103097955--103098143 Score: 292
Period size: 29 Copynumber: 6.6 Consensus size: 29
103097945 GCTTGGAAGG
103097955 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCAAACTTAAATTA
103097984 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCAAACTTAAATTA
*
103098013 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCAAACTTAAATTA
* *
103098042 TATGGCACTAGGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCAAACTTAAATTA
103098071 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCAAACTTAAATTA
* * **
103098100 TATGGCACT-A-TGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCAAACTTAAATTA
*
103098127 CATGGCACTAAGTGTGC
1 TATGGCACTAAGTGTGC
103098144 GAGATCGTTT
Statistics
Matches: 149, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
27 21 0.14
28 2 0.01
29 126 0.85
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCAAACTTAAATTA
Found at i:103100517 original size:6 final size:6
Alignment explanation
Indices: 103100506--103100559 Score: 101
Period size: 6 Copynumber: 9.2 Consensus size: 6
103100496 TAGGAAGATA
103100506 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
103100553 TTATTT T
1 TTATTT T
103100560 ATTAAATTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.11
6 42 0.89
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:103107368 original size:41 final size:41
Alignment explanation
Indices: 103107311--103107395 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
103107301 AATGCCCAAA
103107311 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
*
103107352 CCACAAAATAGAAAAGTGAGTACTCACAGTCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
103107393 CCA
1 CCA
103107396 ACTATATCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.24, G:0.15, T:0.19
Consensus pattern (41 bp):
CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
Found at i:103118342 original size:18 final size:18
Alignment explanation
Indices: 103118313--103118349 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
103118303 ATTTAAATTT
103118313 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
103118331 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
103118349 T
1 T
103118350 ATGGAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68
Consensus pattern (18 bp):
TTTTTATTATTATATGTG
Found at i:103121435 original size:30 final size:30
Alignment explanation
Indices: 103121399--103121458 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
103121389 TCATGAATGG
* *
103121399 AGCTTAACTTGACATTCTCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
103121429 AGCTTAACTCGACATTCCCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
103121459 TTCTGTCCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (30 bp):
AGCTTAACTCGACATTCCCTTATCTCCTCA
Found at i:103123061 original size:42 final size:43
Alignment explanation
Indices: 103122960--103123073 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
103122950 AGCTCGTACA
* * * * *
103122960 ATGCTAATGTCCCAGAC-GTGATTTTACATGTAATCAAATACTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATACTG
*
103123003 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATAC-G
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATACTG
*
103123045 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAGACAGGGTCTTACAC
103123074 ATAAATCATA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 28 0.45
43 33 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATACTG
Found at i:103123080 original size:43 final size:42
Alignment explanation
Indices: 103122960--103123116 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
103122950 AGCTCGTACA
* * * * *
103122960 ATGCTAATGTCCCAGACGTGATTTTACA-TGTAATCAAATACTG
1 ATGCCAATGTCCCAGACATGGTCTTACACT-AAATCAAATAC-G
* * *
103123003 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACTAAATCAAATACG
*
103123045 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCATAAGT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-TAAATCA-AA-TACG
* ** *
103123089 ATACCAATGTCGTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
103123117 TGATAACACA
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 27 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTAAATCAAATACG
Found at i:103127358 original size:21 final size:22
Alignment explanation
Indices: 103127314--103127359 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
103127304 GGTCTCAGTG
* *
103127314 TTCACTTTGGTACATGAGTTTT
1 TTCAATTTGATACATGAGTTTT
* *
103127336 TTCAATTTGATACTTGATTTTT
1 TTCAATTTGATACATGAGTTTT
103127358 TT
1 TT
103127360 TGTCATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATACATGAGTTTT
Found at i:103128720 original size:2 final size:2
Alignment explanation
Indices: 103128713--103128750 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
103128703 GAAAGCCTTA
103128713 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103128751 TGACCTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103129574 original size:267 final size:268
Alignment explanation
Indices: 103129077--103129611 Score: 1000
Period size: 267 Copynumber: 2.0 Consensus size: 268
103129067 AAAAAAATAA
*
103129077 AATGAACATTAGTAATATAATTTTTTTATGTTTTATACTTATTTTAACCAAAAGACAAACATATA
1 AATGAACATTAGTAATATAATCTTTTTATGTTTTATACTTATTTTAACCAAAAGACAAACATATA
103129142 AATTTTGATTAATTCAGTTACCCAAAATATTTCGGTTTGGTTAAAATATTTGAAAAAAAATTTGA
66 AATTTTGATTAATTCAGTTACCCAAAATATTTCGGTTTGGTTAAAATATTTGAAAAAAAATTTGA
*
103129207 TTCGATTAACAATTAAAGATTTTTATGTTTCGAGTAATTTGGTTAATAATAATTCGATTCAATTA
131 TTCGATTAACAATTAAAGATTTTTATGTTTCGAGTAATTCGGTTAATAATAATTCGATTCAATTA
103129272 ATTATCGAACCGACCATTTGAATACCCCTAATGGAATTAAATAATTTACATTATGTGACTATGTG
196 ATTATCGAACCGACCATTTGAATACCCCTAATGGAATTAAATAATTTACATTATGTGACTATGTG
103129337 TTGACAAG
261 TTGACAAG
103129345 AATGAACATTAGTAATATAA-CTTTTTATGTTTTATACTTATTTTAACCAAAAGACAAACATATA
1 AATGAACATTAGTAATATAATCTTTTTATGTTTTATACTTATTTTAACCAAAAGACAAACATATA
* *
103129409 AATTTTGATTAATTCGGTTACCCGAAATATTTCGGTTTGGTTAAAATATTTGAAAAAAAATTTGA
66 AATTTTGATTAATTCAGTTACCCAAAATATTTCGGTTTGGTTAAAATATTTGAAAAAAAATTTGA
*
103129474 TTCGATTAACGATTAAAGATTTTTATGTTTCGAGTAATTCGGTTAATAATAATTCGATTCAATTA
131 TTCGATTAACAATTAAAGATTTTTATGTTTCGAGTAATTCGGTTAATAATAATTCGATTCAATTA
* *
103129539 ATTATCGAACTGACCGTTTGAATACCCCTAATGGAATTAAATAATTTACATTATGTGACTATGTG
196 ATTATCGAACCGACCATTTGAATACCCCTAATGGAATTAAATAATTTACATTATGTGACTATGTG
103129604 TTGACAAG
261 TTGACAAG
103129612 GGCGAAGCTA
Statistics
Matches: 260, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
267 240 0.92
268 20 0.08
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (268 bp):
AATGAACATTAGTAATATAATCTTTTTATGTTTTATACTTATTTTAACCAAAAGACAAACATATA
AATTTTGATTAATTCAGTTACCCAAAATATTTCGGTTTGGTTAAAATATTTGAAAAAAAATTTGA
TTCGATTAACAATTAAAGATTTTTATGTTTCGAGTAATTCGGTTAATAATAATTCGATTCAATTA
ATTATCGAACCGACCATTTGAATACCCCTAATGGAATTAAATAATTTACATTATGTGACTATGTG
TTGACAAG
Found at i:103147466 original size:31 final size:31
Alignment explanation
Indices: 103147423--103147482 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
103147413 ATTTATTCAT
* *
103147423 TGAATTATTTAAAATTTTTTATTTAAGTCAC
1 TGAATTACTTAAAAGTTTTTATTTAAGTCAC
103147454 TGAATTACTTAAAAGTTTTTATTTAAGTC
1 TGAATTACTTAAAAGTTTTTATTTAAGTC
103147483 CTTAGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.50
Consensus pattern (31 bp):
TGAATTACTTAAAAGTTTTTATTTAAGTCAC
Found at i:103148971 original size:16 final size:16
Alignment explanation
Indices: 103148945--103148982 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
103148935 GTTTTTTATT
103148945 TTTTGGATTTAAGGTTA
1 TTTT-GATTTAAGGTTA
*
103148962 TTTTGATTTAGGGTTA
1 TTTTGATTTAAGGTTA
103148978 TTTTG
1 TTTTG
103148983 GGTTATTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (16 bp):
TTTTGATTTAAGGTTA
Found at i:103149332 original size:62 final size:61
Alignment explanation
Indices: 103149232--103149364 Score: 212
Period size: 62 Copynumber: 2.2 Consensus size: 61
103149222 TTATTGTCTA
* *
103149232 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTA-TTTTCTATTGG
* *
103149294 TTATTGTCTGCCATGTGCATGACAAAAATGGTTATGTTTGTATTAATTTATTTTCTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
*
103149355 TTATTATCTG
1 TTATTGTCTG
103149365 ACAGAAATGG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 19 0.29
62 47 0.71
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (61 bp):
TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
Found at i:103151400 original size:70 final size:67
Alignment explanation
Indices: 103151155--103151444 Score: 454
Period size: 67 Copynumber: 4.3 Consensus size: 67
103151145 TTAGTTAGTG
* * * ** *
103151155 TTTTTTAATATGCATGTAGTGACTATTTTTGTGTATGACTGTTTTTTAATATACATGTTGTTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
103151220 TA
66 TA
* * *
103151222 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATGACTGTTTTTTAATATACATGCTATTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
103151287 TA
66 TA
103151289 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTTAATATACATGTTGTTGA
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTG-TTTTTTAATATACATGTTGTTGA
103151354 CTA
65 CTA
*
103151357 TTTTTTAATATATGCATGCAGTGATTGTTAGTGTGTATAACTGTTTATTTAATATACATGTTGTT
1 TTTTTT-A-ATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTT-TTTAATATACATGTTGTT
103151422 GACTA
63 GACTA
103151427 TTTTTTAATATGCATGCA
1 TTTTTTAATATGCATGCA
103151445 ATGAGTATTT
Statistics
Matches: 208, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
67 100 0.48
68 41 0.20
69 5 0.02
70 62 0.30
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.50
Consensus pattern (67 bp):
TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
TA
Found at i:103165455 original size:22 final size:22
Alignment explanation
Indices: 103165430--103165486 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
103165420 AACAAGCTTG
103165430 TGTCTTGAGACAAGACTCAAAT
1 TGTCTTGAGACAAGACTCAAAT
*
103165452 TGTCTTGAGATAAGACTCAAAT
1 TGTCTTGAGACAAGACTCAAAT
103165474 TGTCTTGAGACAA
1 TGTCTTGAGACAA
103165487 TGTTAGGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (22 bp):
TGTCTTGAGACAAGACTCAAAT
Found at i:103167158 original size:2 final size:2
Alignment explanation
Indices: 103167151--103167180 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
103167141 ACATAAAAAC
103167151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103167181 GTAGCACCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103168154 original size:27 final size:26
Alignment explanation
Indices: 103168096--103168233 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 26
103168086 TGGCTGCCAA
* *
103168096 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
103168122 ATACAGATAATCGTGGCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAG
103168150 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* *
103168177 ATCAGATATTTGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* * *
103168204 ATCAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
103168231 AAC
1 AAC
103168234 GCTTCCTCCA
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
26 1 0.01
27 85 0.83
28 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:103169883 original size:26 final size:26
Alignment explanation
Indices: 103169847--103169980 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
103169837 CATGAAATTC
* *
103169847 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
* *
103169873 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
103169899 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
103169925 TTATAATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
103169951 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
103169977 TTAT
1 TTAT
103169981 AAATTTGTAT
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:103173888 original size:19 final size:22
Alignment explanation
Indices: 103173849--103173888 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
103173839 AGAAACCCAA
103173849 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
103173871 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
103173889 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:103173979 original size:26 final size:27
Alignment explanation
Indices: 103173950--103174088 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
103173940 AGCATGGCTG
* *
103173950 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
103173976 CCAGATACAGATA-ATCGTGGCAGAG-CA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
103174003 CCAGAACAGATATATGTGGCAGA-CCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
103174029 CCA-ATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
103174055 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
103174082 CCAGAAC
1 CCAGAAC
103174089 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 5, Indels: 11
0.86 0.04 0.09
Matches are distributed among these distances:
25 17 0.17
26 31 0.30
27 46 0.45
28 8 0.08
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:103174073 original size:52 final size:54
Alignment explanation
Indices: 103173950--103174086 Score: 174
Period size: 52 Copynumber: 2.6 Consensus size: 54
103173940 AGCATGGCTG
* *
103173950 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCA
* *
103174003 CCAGAACAGATATATGTGGCAGA-CCACCA-AT-CAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAG-CA
* * *
103174055 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
103174087 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
51 16 0.22
52 24 0.33
53 23 0.32
54 10 0.14
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCA
Found at i:103175736 original size:26 final size:26
Alignment explanation
Indices: 103175700--103175833 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
103175690 CATGAAATTC
* *
103175700 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
* *
103175726 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
103175752 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
103175778 TTATAATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
103175804 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
103175830 TTAT
1 TTAT
103175834 AAATTTGTAT
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:103177908 original size:3 final size:3
Alignment explanation
Indices: 103177900--103178025 Score: 200
Period size: 3 Copynumber: 42.0 Consensus size: 3
103177890 ATGTTAAATT
103177900 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
103177948 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
103177996 TGA TAA AAA T-A TAA TAG TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
103178026 AACCAATACA
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
2 2 0.02
3 108 0.96
4 3 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:103178064 original size:13 final size:12
Alignment explanation
Indices: 103178046--103178081 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
103178036 TGCAAACATT
103178046 AAGAAAGAAAAG
1 AAGAAAGAAAAG
103178058 AAAGAAAGAAAAG
1 -AAGAAAGAAAAG
103178071 AAGAAGAGAAA
1 AAGAA-AGAAA
103178082 GCTTACGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AAGAAAGAAAAG
Found at i:103180110 original size:49 final size:49
Alignment explanation
Indices: 103180053--103180233 Score: 229
Period size: 49 Copynumber: 3.7 Consensus size: 49
103180043 TTGGTACGCA
*
103180053 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTATACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * ** * *
103180102 TAGTAGCCTGCACTTAGTTCTAAACA-CCTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGC-GACC-AATTATCCGGTACACG
*
103180152 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * *
103180201 TAGTAGCCTACGCTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
103180234 TCACAATAGA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 69 0.63
50 39 0.35
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:103180512 original size:27 final size:27
Alignment explanation
Indices: 103180482--103180535 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
103180472 TCATACAACC
* *
103180482 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
103180509 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
103180536 TTACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:103182319 original size:6 final size:6
Alignment explanation
Indices: 103182303--103182333 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
103182293 GTCATTTATA
*
103182303 TATATG GATATG TATATG TATATG TATATG T
1 TATATG TATATG TATATG TATATG TATATG T
103182334 TTGTGGTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.48
Consensus pattern (6 bp):
TATATG
Found at i:103186041 original size:71 final size:72
Alignment explanation
Indices: 103185962--103186155 Score: 198
Period size: 72 Copynumber: 2.7 Consensus size: 72
103185952 ACGACATATT
** *
103185962 ATGTAATGCCCGC-ATTTGAGCTACTCATTGGTCTGTACACAAAGTCAGCACCCAGACCCCAAAG
1 ATGTAATGCCCGCTATTTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCCAGACCCCAAAG
*
103186026 CATTATC
66 CATTAAC
* * * * * **
103186033 ATGTAATGCCTGCTCTTTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCTTAAAG
1 ATGTAATGCCCGCTATTTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCCAGACCCCAAAG
103186098 CATTAAC
66 CATTAAC
* * * * *
103186105 ATG-ATATGCTCGCT-TAGTGAGTTATTCACGGGTTTATACAC-AAGTCAGCAC
1 ATGTA-ATGCCCGCTAT-TTGAGCTACTCACGGGTCTATACACAAAGTCAGCAC
103186156 TCAAGCCCAC
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
71 23 0.22
72 80 0.78
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (72 bp):
ATGTAATGCCCGCTATTTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCCAGACCCCAAAG
CATTAAC
Found at i:103186862 original size:19 final size:19
Alignment explanation
Indices: 103186831--103186873 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
103186821 CTATAGCAAC
103186831 TCACAATTT-CAA-TTATT
1 TCACAATTTACAATTTATT
103186848 TCACACATTTACAATTTATT
1 TCACA-ATTTACAATTTATT
*
103186868 TTACAA
1 TCACAA
103186874 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACAATTTACAATTTATT
Found at i:103194089 original size:3 final size:3
Alignment explanation
Indices: 103194081--103194158 Score: 156
Period size: 3 Copynumber: 26.0 Consensus size: 3
103194071 GGCAGCAATT
103194081 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
103194129 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
103194159 TTGCTGGACA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:103197080 original size:40 final size:40
Alignment explanation
Indices: 103197035--103197201 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
103197025 CGGAATATAA
103197035 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
103197075 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
103197115 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
103197155 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
103197194 CCGGATAT
1 CCGGATAT
103197202 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103197185 original size:80 final size:79
Alignment explanation
Indices: 103197051--103197201 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
103197041 ATAATCACGT
*
103197051 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
103197116 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
103197131 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
103197194 CCGGATAT
64 CCGGATAT
103197202 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:103205091 original size:40 final size:40
Alignment explanation
Indices: 103205046--103205212 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
103205036 CGGAATATAA
103205046 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
103205086 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
103205126 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
103205166 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
103205205 CCGGATAT
1 CCGGATAT
103205213 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103205196 original size:80 final size:79
Alignment explanation
Indices: 103205062--103205212 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
103205052 ATAATCACGT
*
103205062 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
103205127 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
103205142 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
103205205 CCGGATAT
64 CCGGATAT
103205213 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:103206472 original size:57 final size:57
Alignment explanation
Indices: 103206408--103206517 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
103206398 CCCCCTTTTC
103206408 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTCTTTTCTTT
*** **
103206465 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTT
103206518 TTTTTTTTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 42 0.91
58 4 0.09
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (57 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTTCTTT
Found at i:103212953 original size:2 final size:2
Alignment explanation
Indices: 103212946--103212985 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
103212936 ATGAAATTGG
* *
103212946 AT AT AT AT AT TT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103212986 GAATTGGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:103214623 original size:53 final size:53
Alignment explanation
Indices: 103214440--103214646 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
103214430 ATTAGGGTTT
* * * * * * *
103214440 AAGGATACTAAGTAAAACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
103214494 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
103214549 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
103214602 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
103214647 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 39 0.33
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:103217693 original size:48 final size:48
Alignment explanation
Indices: 103217619--103217938 Score: 327
Period size: 48 Copynumber: 6.8 Consensus size: 48
103217609 CACATGGTAG
* * * * *
103217619 GATG-CAATGCCATATCCC-GTATATGGTCTTACATAGGATCACATATC
1 GATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGATCATAGATC
* * * *
103217666 AATGCCAATGCCATGTCCCAGGCATGGTCTTACGTGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGATC
* * *
103217714 GATGCCAATGCCATGTCCCAGGCATGGTCTTAC-TCGGATCATAGATA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGATC
* * *
103217761 GATTCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGATC
* * *
103217809 GATGCCAATGCCATGTCCTAGACATGGTCTTGCATGGGATCATATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGATC
* ** * *
103217857 GATGCCGAT---A-G-CCCAG-CTATGGTCTTACATGAAATCACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCATAGATC
* *
103217900 GATGCCAAAGCCATGT-CCAGACGTGGTCTTACATGGGAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
103217939 TGTACATAAC
Statistics
Matches: 227, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.00
43 32 0.14
44 1 0.00
45 1 0.00
46 1 0.00
47 63 0.28
48 127 0.56
49 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGATC
Found at i:103219731 original size:5 final size:6
Alignment explanation
Indices: 103219718--103219764 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
103219708 ATAATTTAAT
*
103219718 AAATAA AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
103219765 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:103219766 original size:20 final size:19
Alignment explanation
Indices: 103219718--103219764 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
103219708 ATAATTTAAT
103219718 AAATAAAAA-TAAAAATAA
1 AAATAAAAACTAAAAATAA
*
103219736 AAATCTAAAACTAAAAATAA
1 AAAT-AAAAACTAAAAATAA
103219756 AAATAAAAA
1 AAATAAAAA
103219765 ACATATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 8 0.32
20 13 0.52
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAAACTAAAAATAA
Found at i:103219798 original size:9 final size:9
Alignment explanation
Indices: 103219784--103219869 Score: 93
Period size: 9 Copynumber: 9.6 Consensus size: 9
103219774 TTTATACAAA
*
103219784 TAATTCAGT
1 TAATTCGGT
103219793 TAATTCGGT
1 TAATTCGGT
*
103219802 CAATTCGGT
1 TAATTCGGT
* *
103219811 TAATTTGGG
1 TAATTCGGT
103219820 TAATTCAGG-
1 TAATTC-GGT
103219829 TAATTCGGT
1 TAATTCGGT
* *
103219838 TAATTTGAT
1 TAATTCGGT
*
103219847 TAATTCAGT
1 TAATTCGGT
103219856 TAATTCGGT
1 TAATTCGGT
103219865 TAATT
1 TAATT
103219870 TTATACTTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
8 2 0.03
9 59 0.94
10 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:103221087 original size:22 final size:22
Alignment explanation
Indices: 103221059--103221109 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
103221049 GAGTTACATG
** *
103221059 GTGACTTGGAACCCCTAAAGTT
1 GTGACTTCAAACCCCCAAAGTT
103221081 GTGACTTCAAACCCCCAAAGTT
1 GTGACTTCAAACCCCCAAAGTT
103221103 GTGACTT
1 GTGACTT
103221110 AACCCGATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (22 bp):
GTGACTTCAAACCCCCAAAGTT
Found at i:103227525 original size:93 final size:93
Alignment explanation
Indices: 103227366--103227535 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
103227356 GGATGGTTGA
* *
103227366 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
103227431 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
103227459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
103227524 TGAGTCCGAGTT
66 TGAGTCCGAGTT
103227536 CACTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:103227540 original size:46 final size:46
Alignment explanation
Indices: 103227370--103227541 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
103227360 GGTTGAGCAT
* * *
103227370 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
103227416 CCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
103227461 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
103227509 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
103227542 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 2 0.02
46 57 0.53
47 25 0.23
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:103229081 original size:45 final size:45
Alignment explanation
Indices: 103228923--103229086 Score: 183
Period size: 45 Copynumber: 3.7 Consensus size: 45
103228913 CAATGCCATT
* * ** *
103228923 GTCCCAAACAGGGTCTTACACG-AATCA-A-ATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCACATATATCGATGCAAAC
* *
103228964 GTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCAAAC
1 GTCCCAGACATGGTCTTACACGAAATCACATATATCGATGCAAAC
* * * *
103229009 GTCCCAAACATGGTCTTACACGGAATCAAATATATCGATGCGAAC
1 GTCCCAGACATGGTCTTACACGAAATCACATATATCGATGCAAAC
* *
103229054 GTCCCAGACGTGGTCTTACACAAAATCACATAT
1 GTCCCAGACATGGTCTTACACGAAATCACATAT
103229087 CAGAATCCTA
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 20 0.19
42 4 0.04
43 1 0.01
44 4 0.04
45 74 0.72
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (45 bp):
GTCCCAGACATGGTCTTACACGAAATCACATATATCGATGCAAAC
Found at i:103229084 original size:90 final size:86
Alignment explanation
Indices: 103228923--103229086 Score: 222
Period size: 90 Copynumber: 1.9 Consensus size: 86
103228913 CAATGCCATT
* **
103228923 GTCCCAAACAGGGTCTTACACGAATCAAATATGATGCCGATGTCCCAGACATGGTCTTACACGTA
1 GTCCCAAACAGGGTCTTACACGAATCAAATATGATGCCGACGTCCCAGACATGGTCTTACACAAA
103228988 ACCACATATATCGATGCAAAC
66 ACCACATATATCGATGCAAAC
* *
103229009 GTCCCAAACATGGTCTTACACGGAATCAAATATATCGATG-CGAACGTCCCAGACGTGGTCTTAC
1 GTCCCAAACAGGGTCTTACAC-GAATC-AA-ATAT-GATGCCG-ACGTCCCAGACATGGTCTTAC
*
103229073 ACAAAATCACATAT
61 ACAAAACCACATAT
103229087 CAGAATCCTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
86 20 0.30
87 5 0.07
88 2 0.03
89 6 0.09
90 34 0.51
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (86 bp):
GTCCCAAACAGGGTCTTACACGAATCAAATATGATGCCGACGTCCCAGACATGGTCTTACACAAA
ACCACATATATCGATGCAAAC
Found at i:103230140 original size:14 final size:15
Alignment explanation
Indices: 103230123--103230151 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103230113 TCACGAAAAT
103230123 TTCACACAT-ATAAA
1 TTCACACATAATAAA
103230137 TTCACACATAATAAA
1 TTCACACATAATAAA
103230152 CACAGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:103231448 original size:8 final size:8
Alignment explanation
Indices: 103231435--103231460 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
103231425 ATACTAATAC
103231435 TAATATAA
1 TAATATAA
103231443 TAATATAA
1 TAATATAA
103231451 TAATATAA
1 TAATATAA
103231459 TA
1 TA
103231461 TAATTCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATATAA
Found at i:103231470 original size:16 final size:16
Alignment explanation
Indices: 103231423--103231470 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
103231413 TTTATTATAC
103231423 TAATACTAATACTAATA
1 TAATA-TAATACTAATA
*
103231440 TAATA-ATATAATAATA
1 TAATATA-ATACTAATA
*
103231456 TAATATAATTCTAAT
1 TAATATAATACTAAT
103231471 TACTGAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 1 0.04
16 19 0.73
17 6 0.23
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATATAATACTAATA
Found at i:103231495 original size:38 final size:39
Alignment explanation
Indices: 103231423--103231507 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 39
103231413 TTTATTATAC
*
103231423 TAATACTAA-TACTAATATAATAATATAATAATATAATA
1 TAATTCTAATTACTAATATAATAATATAATAATATAATA
*
103231461 TAATTCTAATTACTGAA-ATAATAAGTA-AAT-ATATATTA
1 TAATTCTAATTACT-AATATAATAA-TATAATAATATAATA
103231499 TAATT-TAAT
1 TAATTCTAAT
103231508 ATATGATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
37 4 0.10
38 20 0.48
39 14 0.33
40 4 0.10
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (39 bp):
TAATTCTAATTACTAATATAATAATATAATAATATAATA
Found at i:103234384 original size:29 final size:28
Alignment explanation
Indices: 103234338--103234397 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
103234328 CTTCTATTTA
*
103234338 TTTCAAAATTTAACCCCTCAATTTACACT
1 TTTCAAAATTTAACCCCT-AATTGACACT
* *
103234367 TTTCTAAAA-TTAATCCCTAATTGACATT
1 TTTC-AAAATTTAACCCCTAATTGACACT
103234395 TTT
1 TTT
103234398 GTCAAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 11 0.41
29 12 0.44
30 4 0.15
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (28 bp):
TTTCAAAATTTAACCCCTAATTGACACT
Found at i:103234404 original size:29 final size:31
Alignment explanation
Indices: 103234340--103234404 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 31
103234330 TCTATTTATT
*
103234340 TCAAAATTTAACCCCTCAATTTACACTTTTC
1 TCAAAATTTAACCCCTCAATTGACACTTTTC
* * *
103234371 T-AAAA-TTAATCCCT-AATTGACATTTTTG
1 TCAAAATTTAACCCCTCAATTGACACTTTTC
103234399 TCAAAA
1 TCAAAA
103234405 ATCACTTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 12 0.41
29 12 0.41
30 4 0.14
31 1 0.03
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.38
Consensus pattern (31 bp):
TCAAAATTTAACCCCTCAATTGACACTTTTC
Found at i:103236776 original size:29 final size:29
Alignment explanation
Indices: 103236742--103236819 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
103236732 GTGACGAGAT
* *
103236742 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
103236771 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
103236800 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
103236820 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:103244655 original size:28 final size:29
Alignment explanation
Indices: 103244593--103244656 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
103244583 GTGACGAGAT
** *
103244593 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
*
103244622 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
103244650 CGGCACT
1 CGGCACT
103244657 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:103250477 original size:12 final size:12
Alignment explanation
Indices: 103250460--103250494 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
103250450 ATTACGGAGC
103250460 ATTACCAAACTT
1 ATTACCAAACTT
*
103250472 ATTACCGAACTT
1 ATTACCAAACTT
103250484 ATTACCTAAAC
1 ATTACC-AAAC
103250495 AAGCATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 17 0.85
13 3 0.15
ACGTcount: A:0.40, C:0.26, G:0.03, T:0.31
Consensus pattern (12 bp):
ATTACCAAACTT
Done.