Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr10 129486693 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 129486693 ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32 Warning! 305 characters in sequence are not A, C, G, or T File 356 of 444 Found at i:103258109 original size:56 final size:56 Alignment explanation
Indices: 103258013--103258120 Score: 146 Period size: 56 Copynumber: 1.9 Consensus size: 56 103258003 CCATGGCATC * * * * 103258013 GATATATGTATGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGACTCT 1 GATATATGTATGCGAGTAAGACAATGTCTGAGACGTTGGCATCGATATGTGACTCT * * 103258069 GATATATGTGTGCGAGTAAGACAATGTCTGGGACAG-TGGCATCGATATGTGA 1 GATATATGTATGCGAGTAAGACAATGTCTGAGAC-GTTGGCATCGATATGTGA 103258121 TTTTATGTAA Statistics Matches: 45, Mismatches: 6, Indels: 2 0.85 0.11 0.04 Matches are distributed among these distances: 56 44 0.98 57 1 0.02 ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31 Consensus pattern (56 bp): GATATATGTATGCGAGTAAGACAATGTCTGAGACGTTGGCATCGATATGTGACTCT Found at i:103262097 original size:15 final size:16 Alignment explanation
Indices: 103262069--103262100 Score: 57 Period size: 15 Copynumber: 2.1 Consensus size: 16 103262059 ATGTGGCCCG 103262069 CCCGTGTGGGCCCACA 1 CCCGTGTGGGCCCACA 103262085 CCCGTGT-GGCCCACA 1 CCCGTGTGGGCCCACA 103262100 C 1 C 103262101 GGCTTGTGTG Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 15 9 0.56 16 7 0.44 ACGTcount: A:0.12, C:0.47, G:0.28, T:0.12 Consensus pattern (16 bp): CCCGTGTGGGCCCACA Found at i:103266672 original size:26 final size:26 Alignment explanation
Indices: 103266643--103266756 Score: 140 Period size: 27 Copynumber: 4.3 Consensus size: 26 103266633 AGCATGGCTG * * 103266643 CCAGAACAGATAATGTGACAGAGTCA 1 CCAGAACAGATAATGTGGCAGAGCCA 103266669 CCAGATACAGATAATCGTGGCAGAGCCA 1 CCAGA-ACAGATAAT-GTGGCAGAGCCA 103266697 CCAGAA-AGATATATGTGGCAGAGCCA 1 CCAGAACAGATA-ATGTGGCAGAGCCA * * * 103266723 CCAGATCAGATATTTGTGGCATAGCCA 1 CCAGAACAGATA-ATGTGGCAGAGCCA 103266750 CCAGAAC 1 CCAGAAC 103266757 GCTTCCTCCA Statistics Matches: 78, Mismatches: 6, Indels: 7 0.86 0.07 0.08 Matches are distributed among these distances: 26 27 0.35 27 36 0.46 28 15 0.19 ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17 Consensus pattern (26 bp): CCAGAACAGATAATGTGGCAGAGCCA Found at i:103266701 original size:22 final size:22 Alignment explanation
Indices: 103266676--103266728 Score: 54 Period size: 26 Copynumber: 2.2 Consensus size: 22 103266666 TCACCAGATA 103266676 CAGATA-ATCGTGGCAGAGCCAC 1 CAGATATAT-GTGGCAGAGCCAC 103266698 CAGAAAGATATATGTGGCAGAGCCAC 1 C----AGATATATGTGGCAGAGCCAC 103266724 CAGAT 1 CAGAT 103266729 CAGATATTTG Statistics Matches: 26, Mismatches: 0, Indels: 10 0.72 0.00 0.28 Matches are distributed among these distances: 22 5 0.19 26 19 0.73 27 2 0.08 ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15 Consensus pattern (22 bp): CAGATATATGTGGCAGAGCCAC Found at i:103266707 original size:53 final size:54 Alignment explanation
Indices: 103266643--103266756 Score: 160 Period size: 53 Copynumber: 2.1 Consensus size: 54 103266633 AGCATGGCTG * 103266643 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA 1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA * * * * 103266697 CCAGAA-AGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA 1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA 103266750 CCAGAAC 1 CCAGAAC 103266757 GCTTCCTCCA Statistics Matches: 53, Mismatches: 5, Indels: 4 0.85 0.08 0.06 Matches are distributed among these distances: 53 29 0.55 54 24 0.45 ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17 Consensus pattern (54 bp): CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA Found at i:103268423 original size:25 final size:25 Alignment explanation
Indices: 103268366--103268498 Score: 214 Period size: 25 Copynumber: 5.2 Consensus size: 25 103268356 CATGAAATTC 103268366 TTATCATGAAACATTTACCTAACCCA 1 TTATCATGAAACATTTACCTAA-CCA 103268392 TTATCATGAAACATTTACCTAACCA 1 TTATCATGAAACATTTACCTAACCA * 103268417 TTATCATGGAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACC-A 103268443 TTATCATG-AACATTTACCTAACCA 1 TTATCATGAAACATTTACCTAACCA * 103268467 TTATCATGGAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACC-A 103268493 TTATCA 1 TTATCA 103268499 ATTTGTATCA Statistics Matches: 103, Mismatches: 1, Indels: 6 0.94 0.01 0.05 Matches are distributed among these distances: 24 9 0.09 25 56 0.54 26 38 0.37 ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34 Consensus pattern (25 bp): TTATCATGAAACATTTACCTAACCA Found at i:103268476 original size:50 final size:51 Alignment explanation
Indices: 103268366--103268498 Score: 241 Period size: 50 Copynumber: 2.6 Consensus size: 51 103268356 CATGAAATTC * * 103268366 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCA 1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA 103268417 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCA 1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA 103268467 TTATCATGGAACATTTACCTAACCTATTATCA 1 TTATCATGGAACATTTACCTAACCTATTATCA 103268499 ATTTGTATCA Statistics Matches: 80, Mismatches: 2, Indels: 1 0.96 0.02 0.01 Matches are distributed among these distances: 50 48 0.60 51 32 0.40 ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34 Consensus pattern (51 bp): TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA Found at i:103272509 original size:27 final size:26 Alignment explanation
Indices: 103272472--103272586 Score: 149 Period size: 27 Copynumber: 4.3 Consensus size: 26 103272462 AGCATGGCTG * * 103272472 CCAGAACAGATAATGTGACAGAGTCA 1 CCAGAACAGATAATGTGGCAGAGCCA 103272498 CCAGATACAGATAATCGTGGCAGAGCCA 1 CCAGA-ACAGATAAT-GTGGCAGAGCCA 103272526 CCAGAACAGATATATGTGGCAGAGCCA 1 CCAGAACAGATA-ATGTGGCAGAGCCA * * * 103272553 CCAGATCAGATATTTGTGGCATAGCCA 1 CCAGAACAGATA-ATGTGGCAGAGCCA 103272580 CCAGAAC 1 CCAGAAC 103272587 GCTTCCTCCA Statistics Matches: 80, Mismatches: 6, Indels: 5 0.88 0.07 0.05 Matches are distributed among these distances: 26 5 0.06 27 58 0.73 28 17 0.21 ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17 Consensus pattern (26 bp): CCAGAACAGATAATGTGGCAGAGCCA Found at i:103272531 original size:54 final size:54 Alignment explanation
Indices: 103272472--103272586 Score: 169 Period size: 54 Copynumber: 2.1 Consensus size: 54 103272462 AGCATGGCTG * 103272472 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA 1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA * * * * 103272526 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA 1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA 103272580 CCAGAAC 1 CCAGAAC 103272587 GCTTCCTCCA Statistics Matches: 55, Mismatches: 5, Indels: 2 0.89 0.08 0.03 Matches are distributed among these distances: 54 37 0.67 55 18 0.33 ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17 Consensus pattern (54 bp): CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA Found at i:103273013 original size:8 final size:8 Alignment explanation
Indices: 103272998--103273034 Score: 65 Period size: 8 Copynumber: 4.6 Consensus size: 8 103272988 AAAATACCTA 103272998 CTTTTCGG 1 CTTTTCGG * 103273006 CATTTCGG 1 CTTTTCGG 103273014 CTTTTCGG 1 CTTTTCGG 103273022 CTTTTCGG 1 CTTTTCGG 103273030 CTTTT 1 CTTTT 103273035 GCCAATCTAG Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 27 1.00 ACGTcount: A:0.03, C:0.24, G:0.22, T:0.51 Consensus pattern (8 bp): CTTTTCGG Found at i:103274273 original size:25 final size:26 Alignment explanation
Indices: 103274204--103274310 Score: 166 Period size: 26 Copynumber: 4.2 Consensus size: 26 103274194 ACATGAATTC 103274204 TTATCATGAAACATTTACCTAACCCA 1 TTATCATGAAACATTTACCTAACCCA * 103274230 TTATCATGAAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACCCA 103274256 TTATCATG-AACATTTACCTAACCCA 1 TTATCATGAAACATTTACCTAACCCA * * 103274281 TTATCATGGAACATTTA-CTAA-CTA 1 TTATCATGAAACATTTACCTAACCCA 103274305 TTATCA 1 TTATCA 103274311 ATTTGTATCA Statistics Matches: 77, Mismatches: 3, Indels: 4 0.92 0.04 0.05 Matches are distributed among these distances: 24 8 0.10 25 28 0.36 26 41 0.53 ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35 Consensus pattern (26 bp): TTATCATGAAACATTTACCTAACCCA Found at i:103274281 original size:51 final size:50 Alignment explanation
Indices: 103274204--103274310 Score: 180 Period size: 51 Copynumber: 2.1 Consensus size: 50 103274194 ACATGAATTC 103274204 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCTA 1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTA-CTAA-CTA * 103274256 TTATCATG-AACATTTACCTAACCCATTATCATGGAACATTTACTAACTA 1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACTAACTA 103274305 TTATCA 1 TTATCA 103274311 ATTTGTATCA Statistics Matches: 54, Mismatches: 1, Indels: 3 0.93 0.02 0.05 Matches are distributed among these distances: 49 9 0.17 50 4 0.07 51 33 0.61 52 8 0.15 ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35 Consensus pattern (50 bp): TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACTAACTA Found at i:103275766 original size:7 final size:8 Alignment explanation
Indices: 103275754--103275780 Score: 54 Period size: 8 Copynumber: 3.4 Consensus size: 8 103275744 GACTAAAATG 103275754 TAAAAAGT 1 TAAAAAGT 103275762 TAAAAAGT 1 TAAAAAGT 103275770 TAAAAAGT 1 TAAAAAGT 103275778 TAA 1 TAA 103275781 GGGCAAAAAT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 19 1.00 ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26 Consensus pattern (8 bp): TAAAAAGT Found at i:103278247 original size:10 final size:10 Alignment explanation
Indices: 103278232--103278259 Score: 56 Period size: 10 Copynumber: 2.8 Consensus size: 10 103278222 ATTAGGGGAA 103278232 AAAGTAAAAC 1 AAAGTAAAAC 103278242 AAAGTAAAAC 1 AAAGTAAAAC 103278252 AAAGTAAA 1 AAAGTAAA 103278260 CATGTAATAT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 18 1.00 ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11 Consensus pattern (10 bp): AAAGTAAAAC Found at i:103284963 original size:25 final size:25 Alignment explanation
Indices: 103284934--103284981 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 103284924 TTATAATATG * * * 103284934 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 103284959 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 103284982 GTTTATGTAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:103285084 original size:20 final size:20 Alignment explanation
Indices: 103285024--103285084 Score: 104 Period size: 20 Copynumber: 3.0 Consensus size: 20 103285014 ATAAATATGG * 103285024 TATGTATGAGATGCACATGA 1 TATGTATGATATGCACATGA * 103285044 CATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 103285064 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 103285084 T 1 T 103285085 GTAATCATAA Statistics Matches: 38, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 20 38 1.00 ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33 Consensus pattern (20 bp): TATGTATGATATGCACATGA Found at i:103285161 original size:24 final size:24 Alignment explanation
Indices: 103285134--103285252 Score: 170 Period size: 24 Copynumber: 5.0 Consensus size: 24 103285124 GAGGAAGTGA * 103285134 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATT 103285158 AAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATT 103285181 AAAAGGGCTTATGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * * 103285205 GAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * 103285229 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 103285253 ATGATAAAGC Statistics Matches: 86, Mismatches: 6, Indels: 5 0.89 0.06 0.05 Matches are distributed among these distances: 23 22 0.26 24 53 0.62 25 11 0.13 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATT Found at i:103285203 original size:47 final size:48 Alignment explanation
Indices: 103285134--103285252 Score: 170 Period size: 47 Copynumber: 2.5 Consensus size: 48 103285124 GAGGAAGTGA 103285134 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT ** * 103285181 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT * 103285229 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 103285253 ATGATAAAGC Statistics Matches: 65, Mismatches: 4, Indels: 4 0.89 0.05 0.05 Matches are distributed among these distances: 47 43 0.66 48 11 0.17 49 11 0.17 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (48 bp): AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT Found at i:103285504 original size:30 final size:31 Alignment explanation
Indices: 103285444--103285506 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 103285434 CGTTTACAGT 103285444 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** 103285475 AAAGGCTTCGGCCCAGTGTTATG-AATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 103285505 AA 1 AA 103285507 CATGAAAAGG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 30 9 0.30 31 21 0.70 ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:103291491 original size:25 final size:25 Alignment explanation
Indices: 103291462--103291509 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 103291452 TTATAATATG * * * 103291462 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 103291487 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 103291510 GTTTATGTAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:103291612 original size:20 final size:20 Alignment explanation
Indices: 103291552--103291612 Score: 104 Period size: 20 Copynumber: 3.0 Consensus size: 20 103291542 ATAAATATGG * 103291552 TATGTATGAGATGCACATGA 1 TATGTATGATATGCACATGA * 103291572 CATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 103291592 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 103291612 T 1 T 103291613 GTAATCATAA Statistics Matches: 38, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 20 38 1.00 ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33 Consensus pattern (20 bp): TATGTATGATATGCACATGA Found at i:103291689 original size:24 final size:24 Alignment explanation
Indices: 103291662--103291780 Score: 170 Period size: 24 Copynumber: 5.0 Consensus size: 24 103291652 GAGGAAGTGA * 103291662 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATT 103291686 AAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATT 103291709 AAAAGGGCTTATGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * * 103291733 GAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * 103291757 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 103291781 ATGATAAAGC Statistics Matches: 86, Mismatches: 6, Indels: 5 0.89 0.06 0.05 Matches are distributed among these distances: 23 22 0.26 24 53 0.62 25 11 0.13 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATT Found at i:103291731 original size:47 final size:48 Alignment explanation
Indices: 103291662--103291780 Score: 170 Period size: 47 Copynumber: 2.5 Consensus size: 48 103291652 GAGGAAGTGA 103291662 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT ** * 103291709 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT * 103291757 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 103291781 ATGATAAAGC Statistics Matches: 65, Mismatches: 4, Indels: 4 0.89 0.05 0.05 Matches are distributed among these distances: 47 43 0.66 48 11 0.17 49 11 0.17 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (48 bp): AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT Found at i:103292007 original size:31 final size:31 Alignment explanation
Indices: 103291972--103292035 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 103291962 CGTTTACAGT 103291972 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** * 103292003 AAAGGCTTCGGCCCAGTGTTATGGAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 103292034 AA 1 AA 103292036 CATGAAAAGG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:103292939 original size:27 final size:27 Alignment explanation
Indices: 103292896--103292976 Score: 101 Period size: 27 Copynumber: 3.0 Consensus size: 27 103292886 AAGGGCAAAA * * 103292896 CAGTCATTTTACCCTACAGGGGTATGTT 1 CAGTCATTTTACACTACAAGGGTAT-TT 103292924 -AGTCATTTTACACTACAAGGGTATTT 1 CAGTCATTTTACACTACAAGGGTATTT * * * 103292950 CAGTAATTTTACAATACAAGAGTATTT 1 CAGTCATTTTACACTACAAGGGTATTT 103292977 TGATAATTTT Statistics Matches: 47, Mismatches: 5, Indels: 3 0.85 0.09 0.05 Matches are distributed among these distances: 26 2 0.04 27 45 0.96 ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37 Consensus pattern (27 bp): CAGTCATTTTACACTACAAGGGTATTT Found at i:103292983 original size:27 final size:27 Alignment explanation
Indices: 103292928--103293258 Score: 141 Period size: 27 Copynumber: 12.4 Consensus size: 27 103292918 TATGTTAGTC * * 103292928 ATTTTACACTACAAGGGTATTTCAGTA 1 ATTTTACAATACAAGAGTATTTCAGTA * 103292955 ATTTTACAATACAAGAGTATTT-TGATA 1 ATTTTACAATACAAGAGTATTTCAG-TA * * * * 103292982 ATTTTACAA-ATC-GGGGTTGTTTCGGTA 1 ATTTTACAATA-CAAGAG-TATTTCAGTA * ** * 103293009 ATGTTACAA-ATTGAGGGTATTTC-GATA 1 ATTTTACAATA-CAAGAGTATTTCAG-TA * * * 103293036 ATTTTACAA-ATCGAGGGTACTTCAGTA 1 ATTTTACAATA-CAAGAGTATTTCAGTA * * ** 103293063 ATTTTACAA-ATCGAGAGTGTTTTGGTA 1 ATTTTACAATA-CAAGAGTATTTCAGTA * * * 103293090 ATTTTACAA-ATCGAGGGTATTTTAGTA 1 ATTTTACAATA-CAAGAGTATTTCAGTA * * * 103293117 ATTTTACAAT-CGAGGGTATTTCGGTA 1 ATTTTACAATACAAGAGTATTTCAGTA * 103293143 ATTTTACAA-ATCAAGGGTATTTCAGTA 1 ATTTTACAATA-CAAGAGTATTTCAGTA * * * 103293170 ATTTTGCAA-ACTAAGGGTATTTCGGTA 1 ATTTTACAATAC-AAGAGTATTTCAGTA ** * ** 103293197 ATTTTACAA-ACTGGGGTATTTTGGTA 1 ATTTTACAATACAAGAGTATTTCAGTA ** * 103293223 AAATTACAA-ATCGAG-GTATTTCAGTA 1 ATTTTACAATA-CAAGAGTATTTCAGTA 103293249 ATTTTACAAT 1 ATTTTACAAT 103293259 CGAGGGTACT Statistics Matches: 251, Mismatches: 40, Indels: 26 0.79 0.13 0.08 Matches are distributed among these distances: 26 65 0.26 27 181 0.72 28 5 0.02 ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38 Consensus pattern (27 bp): ATTTTACAATACAAGAGTATTTCAGTA Found at i:103292986 original size:54 final size:53 Alignment explanation
Indices: 103292939--103293276 Score: 324 Period size: 54 Copynumber: 6.3 Consensus size: 53 103292929 TTTTACACTA * * * * 103292939 CAAGGGTATTTCAGTAATTTTACAATACAAGAGTATTTTGATAATTTTACAAAT 1 CAAGGGTATTTCAGTAATTTTACAA-ACGAGGGTATTTCGGTAATTTTACAAAT * * * * * * 103292993 C-GGGGTTGTTTCGGTAATGTTACAAATTGAGGGTATTTCGATAATTTTACAAAT 1 CAAGGG-TATTTCAGTAATTTTACAAA-CGAGGGTATTTCGGTAATTTTACAAAT * * * * * 103293047 CGAGGGTACTTCAGTAATTTTACAAATCGAGAGTGTTTTGGTAATTTTACAAAT 1 CAAGGGTATTTCAGTAATTTTACAAA-CGAGGGTATTTCGGTAATTTTACAAAT * * * 103293101 CGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAAT 1 CAAGGGTATTTCAGTAATTTTACAAACGAGGGTATTTCGGTAATTTTACAAAT * * 103293154 CAAGGGTATTTCAGTAATTTTGCAAACTAAGGGTATTTCGGTAATTTTACAAA- 1 CAAGGGTATTTCAGTAATTTTACAAAC-GAGGGTATTTCGGTAATTTTACAAAT ** ** ** * 103293207 CTGGGGTATTTTGGTAAAATTACAAATCGA-GGTATTTCAGTAATTTTAC-AAT 1 CAAGGGTATTTCAGTAATTTTACAAA-CGAGGGTATTTCGGTAATTTTACAAAT * * * 103293259 CGAGGGTACTTCGGTAAT 1 CAAGGGTATTTCAGTAAT 103293277 ATCTCTTTAT Statistics Matches: 235, Mismatches: 43, Indels: 14 0.80 0.15 0.05 Matches are distributed among these distances: 51 2 0.01 52 31 0.13 53 71 0.30 54 128 0.54 55 3 0.01 ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38 Consensus pattern (53 bp): CAAGGGTATTTCAGTAATTTTACAAACGAGGGTATTTCGGTAATTTTACAAAT Found at i:103293172 original size:80 final size:80 Alignment explanation
Indices: 103292941--103293276 Score: 351 Period size: 80 Copynumber: 4.2 Consensus size: 80 103292931 TTACACTACA * * * * * 103292941 AGGGTATTTCAGTAATTTTACAATACAAGAGTATTTTGATAATTTTACAAATCG-GGGTTGTTTC 1 AGGGTATTTCAGTAATTTTACAAT-CGAGGGTATTTCGGTAATTTTACAAATCGAGGG-TATTTC * * * 103293005 GGTAATGTTACAAATTG 64 AGTAATTTTACAAATCG * * * * * 103293022 AGGGTATTTC-GATAATTTTACAAATCGAGGGTACTTCAGTAATTTTACAAATCGAGAGTGTTTT 1 AGGGTATTTCAG-TAATTTTAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC * 103293086 GGTAATTTTACAAATCG 64 AGTAATTTTACAAATCG * * 103293103 AGGGTATTTTAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAG 1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG * * 103293168 TAATTTTGCAAA-CTA 66 TAATTTTACAAATC-G * * * ** 103293183 AGGGTATTTCGGTAATTTTACAAACTG-GGGTATTTTGGTAAAATTACAAATCGA-GGTATTTCA 1 AGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA 103293246 GTAATTTTAC-AATCG 65 GTAATTTTACAAATCG * * 103293261 AGGGTACTTCGGTAAT 1 AGGGTATTTCAGTAAT 103293277 ATCTCTTTAT Statistics Matches: 218, Mismatches: 30, Indels: 17 0.82 0.11 0.06 Matches are distributed among these distances: 78 17 0.08 79 20 0.09 80 94 0.43 81 81 0.37 82 6 0.03 ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38 Consensus pattern (80 bp): AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG TAATTTTACAAATCG Found at i:103295770 original size:101 final size:100 Alignment explanation
Indices: 103295571--103295770 Score: 319 Period size: 101 Copynumber: 2.0 Consensus size: 100 103295561 TATTGTGAGG * * 103295571 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT * 103295636 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA 66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA * ** * 103295671 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTAC * 103295736 TAAGTGCAGGCTACTATGCGTACCAGATAGCTTCG 65 TAAGTGCAGGCTACTATGCGTACCAGATAACTTCG 103295771 GCTACAAGTG Statistics Matches: 91, Mismatches: 8, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 100 43 0.47 101 48 0.53 ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29 Consensus pattern (100 bp): TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA Found at i:103299070 original size:29 final size:29 Alignment explanation
Indices: 103299036--103299196 Score: 186 Period size: 29 Copynumber: 5.6 Consensus size: 29 103299026 TAATCGATCA * 103299036 CGCACACTTAGTGCCAT-GTGATTT-AAGCT 1 CGCACACTTAGTGCCATACT--TTTCAAGCT * * ** 103299065 CGCACACATAGTGCCGTATA-ATTT-AAATT 1 CGCACACTTAGTGCC--ATACTTTTCAAGCT 103299094 CGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103299123 TGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103299152 TGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103299181 TGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 103299197 ATCTTGTCAC Statistics Matches: 118, Mismatches: 9, Indels: 10 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.03 28 3 0.03 29 110 0.93 31 2 0.02 ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32 Consensus pattern (29 bp): CGCACACTTAGTGCCATACTTTTCAAGCT Found at i:103307040 original size:29 final size:29 Alignment explanation
Indices: 103307006--103307166 Score: 186 Period size: 29 Copynumber: 5.6 Consensus size: 29 103306996 TAATCGATCA * 103307006 CGCACACTTAGTGCCAT-GTGATTT-AAGCT 1 CGCACACTTAGTGCCATACT--TTTCAAGCT * * ** 103307035 CGCACACATAGTGCCGTATA-ATTT-AAATT 1 CGCACACTTAGTGCC--ATACTTTTCAAGCT 103307064 CGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103307093 TGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103307122 TGCACACTTAGTGCCATACTTTTCAAGCT 1 CGCACACTTAGTGCCATACTTTTCAAGCT * 103307151 TGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 103307167 ATCTTGTCAC Statistics Matches: 118, Mismatches: 9, Indels: 10 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.03 28 3 0.03 29 110 0.93 31 2 0.02 ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32 Consensus pattern (29 bp): CGCACACTTAGTGCCATACTTTTCAAGCT Found at i:103319470 original size:27 final size:27 Alignment explanation
Indices: 103319440--103319727 Score: 310 Period size: 27 Copynumber: 10.7 Consensus size: 27 103319430 TTAGTTTACC 103319440 AAATTACCAAAATACCCTTGGTTTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA 103319467 AAATTACCAAAATACCCTTGGTTT-TCA 1 AAATTACCAAAATACCCTTGGTTTGT-A * * 103319494 AAATTACCCAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA * * * * 103319521 AAATTACTAAAATACTCTTAGTTTATA 1 AAATTACCAAAATACCCTTGGTTTGTA * * 103319548 AAATCACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA * 103319575 AAATTACCAAAATACCCTTGGTTTATA 1 AAATTACCAAAATACCCTTGGTTTGTA * 103319602 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA ** * 103319629 AAATTACCAAAATA-CCTCTAATTTGTG 1 AAATTACCAAAATACCCT-TGGTTTGTA ** ***** 103319656 AAATTACTGAAATACCCTCAACCTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA * * * ** 103319683 AAATAACTAAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCTTGGTTTGTA * 103319710 AAATTACCAAAGTACCCT 1 AAATTACCAAAATACCCT 103319728 CAATTTACAG Statistics Matches: 221, Mismatches: 36, Indels: 8 0.83 0.14 0.03 Matches are distributed among these distances: 26 3 0.01 27 214 0.97 28 4 0.02 ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31 Consensus pattern (27 bp): AAATTACCAAAATACCCTTGGTTTGTA Found at i:103319752 original size:27 final size:27 Alignment explanation
Indices: 103319722--103319975 Score: 312 Period size: 27 Copynumber: 9.4 Consensus size: 27 103319712 ATTACCAAAG * * * 103319722 TACCCTCAATTTACAGAATCACCGTTT 1 TACCCTCGATTTACAAAATTACCGTTT 103319749 TACCCTCGATTTACAAAATTACCGTTT 1 TACCCTCGATTTACAAAATTACCGTTT * * ** 103319776 TACCTTCGATTTACAGAATTACTATTT 1 TACCCTCGATTTACAAAATTACCGTTT * 103319803 TACCCTCGATTTACAAAATTATCGTTT 1 TACCCTCGATTTACAAAATTACCGTTT ** 103319830 TACCCTTAATTTACAAAATTACCGTTT 1 TACCCTCGATTTACAAAATTACCGTTT * * * 103319857 TACCCTCGATTTATAGAATTACCATTT 1 TACCCTCGATTTACAAAATTACCGTTT * * ** 103319884 TACCCTCGATTTATAGAATTACTATTT 1 TACCCTCGATTTACAAAATTACCGTTT * * 103319911 TACCCTTGATTTACAAAATTACCATTT 1 TACCCTCGATTTACAAAATTACCGTTT * 103319938 TACCCTC-AGTTTATAAAATTACCGTTT 1 TACCCTCGA-TTTACAAAATTACCGTTT 103319965 TACCCTCGATT 1 TACCCTCGATT 103319976 GTGAAATTAC Statistics Matches: 197, Mismatches: 28, Indels: 4 0.86 0.12 0.02 Matches are distributed among these distances: 26 1 0.01 27 195 0.99 28 1 0.01 ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40 Consensus pattern (27 bp): TACCCTCGATTTACAAAATTACCGTTT Found at i:103319796 original size:81 final size:81 Alignment explanation
Indices: 103319722--103319975 Score: 348 Period size: 81 Copynumber: 3.1 Consensus size: 81 103319712 ATTACCAAAG * * * * 103319722 TACCCTCAATTTACAGAATCACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATT 1 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT * 103319787 TACAGAATTACTATTT 66 TACAGAATTACCATTT * * * 103319803 TACCCTCGATTTACAAAATTATCGTTTTACCCTTAATTTACAAAATTACCGTTTTACCCTCGATT 1 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT * 103319868 TATAGAATTACCATTT 66 TACAGAATTACCATTT * ** * 103319884 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCTC-AGT 1 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGA-T * * * 103319948 TTATAAAATTACCGTTT 65 TTACAGAATTACCATTT 103319965 TACCCTCGATT 1 TACCCTCGATT 103319976 GTGAAATTAC Statistics Matches: 154, Mismatches: 18, Indels: 2 0.89 0.10 0.01 Matches are distributed among these distances: 80 1 0.01 81 153 0.99 ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40 Consensus pattern (81 bp): TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT TACAGAATTACCATTT Found at i:103320101 original size:81 final size:81 Alignment explanation
Indices: 103320007--103320156 Score: 230 Period size: 81 Copynumber: 1.9 Consensus size: 81 103319997 TATAGGATAG * * * ** 103320007 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTATC-GAA 1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATT-TCAGAA 103320071 ATACCACTGGTTTGTGA 65 ATACCACTGGTTTGTGA * 103320088 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTTCAGAAA 1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTTCAGAAA 103320153 TACC 66 TACC 103320157 CTTGACTTTT Statistics Matches: 62, Mismatches: 6, Indels: 2 0.89 0.09 0.03 Matches are distributed among these distances: 80 2 0.03 81 60 0.97 ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31 Consensus pattern (81 bp): AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTTCAGAAA TACCACTGGTTTGTGA Found at i:103320145 original size:27 final size:27 Alignment explanation
Indices: 103320007--103320130 Score: 178 Period size: 27 Copynumber: 4.6 Consensus size: 27 103319997 TATAGGATAG 103320007 AATTACCAAAATACCCTTAGTTTGTAA 1 AATTACCAAAATACCCTTAGTTTGTAA 103320034 AATTACCAAAATACCCTTAGTTTGTAA 1 AATTACCAAAATACCCTTAGTTTGTAA * * * * 103320061 AATTATCGAAATACCAC-TGGTTTGTGA 1 AATTACCAAAATACC-CTTAGTTTGTAA * * 103320088 AATTACCGAAATACCCTTAATTTGTAA 1 AATTACCAAAATACCCTTAGTTTGTAA 103320115 AATTACCAAAATACCC 1 AATTACCAAAATACCC 103320131 CTAATTTACA Statistics Matches: 86, Mismatches: 9, Indels: 4 0.87 0.09 0.04 Matches are distributed among these distances: 26 1 0.01 27 84 0.98 28 1 0.01 ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31 Consensus pattern (27 bp): AATTACCAAAATACCCTTAGTTTGTAA Found at i:103320145 original size:54 final size:54 Alignment explanation
Indices: 103320007--103320159 Score: 189 Period size: 54 Copynumber: 2.8 Consensus size: 54 103319997 TATAGGATAG * * * 103320007 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAA * * * * * 103320061 AATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAA * ** * * 103320115 AATTACCAAAATACCCCTAATTTACAAAATTTCAGAAATACCCTT 1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTT 103320160 GACTTTTTTT Statistics Matches: 81, Mismatches: 18, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 54 81 1.00 ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32 Consensus pattern (54 bp): AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAA Found at i:103320153 original size:27 final size:28 Alignment explanation
Indices: 103320007--103320157 Score: 89 Period size: 27 Copynumber: 5.6 Consensus size: 28 103319997 TATAGGATAG * * ** 103320007 AATTACCA-AAATACCCTTAGTTTGTAA 1 AATTACCAGAAATACCCCTAATTTACAA * * ** 103320034 AATTACCA-AAATACCCTTAGTTTGTAA 1 AATTACCAGAAATACCCCTAATTTACAA * * ** *** 103320061 AATTATC-GAAATACCACTGGTTTGTGA 1 AATTACCAGAAATACCCCTAATTTACAA * ** 103320088 AATTACC-GAAATACCCTTAATTTGTAA 1 AATTACCAGAAATACCCCTAATTTACAA 103320115 AATTACCA-AAATACCCCTAATTTACAA 1 AATTACCAGAAATACCCCTAATTTACAA * 103320142 AATT-TCAGAAATACCC 1 AATTACCAGAAATACCC 103320158 TTGACTTTTT Statistics Matches: 106, Mismatches: 15, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 26 2 0.02 27 104 0.98 ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31 Consensus pattern (28 bp): AATTACCAGAAATACCCCTAATTTACAA Found at i:103320206 original size:28 final size:27 Alignment explanation
Indices: 103320167--103320224 Score: 73 Period size: 28 Copynumber: 2.1 Consensus size: 27 103320157 CTTGACTTTT * 103320167 TTTTAAAAATTA-TAGGAATACCATTGG 1 TTTTAAAAATTACT-GAAATACCATTGG * 103320194 TTTTACAAAATTACTGAAATACCCTTGG 1 TTTTA-AAAATTACTGAAATACCATTGG 103320222 TTT 1 TTT 103320225 GTAGATTTAC Statistics Matches: 27, Mismatches: 2, Indels: 3 0.84 0.06 0.09 Matches are distributed among these distances: 27 5 0.19 28 21 0.78 29 1 0.04 ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40 Consensus pattern (27 bp): TTTTAAAAATTACTGAAATACCATTGG Found at i:103320299 original size:27 final size:27 Alignment explanation
Indices: 103320269--103320320 Score: 70 Period size: 27 Copynumber: 1.9 Consensus size: 27 103320259 GACTAAAATA 103320269 CCCCTAATA-GGTAAAAAGACCGTAAAG 1 CCCCT-ATAGGGTAAAAAGACCGTAAAG ** 103320296 CCCCTATAGGGTAAAGTGACCGTAA 1 CCCCTATAGGGTAAAAAGACCGTAA 103320321 TACCCTTGTA Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 26 3 0.14 27 19 0.86 ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17 Consensus pattern (27 bp): CCCCTATAGGGTAAAAAGACCGTAAAG Found at i:103321188 original size:25 final size:25 Alignment explanation
Indices: 103321150--103321219 Score: 104 Period size: 25 Copynumber: 2.8 Consensus size: 25 103321140 AGGAAGTGCT * * 103321150 AAAAGGGCTATGCCCCAGTTTACCG 1 AAAAGGGCTTTGCCCCAGTTTACCA * * 103321175 AAAAGGGCTTTGCCCTAGTTTATCA 1 AAAAGGGCTTTGCCCCAGTTTACCA 103321200 AAAAGGGCTTTGCCCCAGTT 1 AAAAGGGCTTTGCCCCAGTT 103321220 ATTAAAAGAG Statistics Matches: 40, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 25 40 1.00 ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAGTTTACCA Found at i:103321232 original size:24 final size:24 Alignment explanation
Indices: 103321149--103321244 Score: 86 Period size: 25 Copynumber: 3.9 Consensus size: 24 103321139 GAGGAAGTGC * 103321149 TAAAAGGGCTATGCCCCAGTTTACC 1 TAAAAGGGCTATGCCCCAGTTTA-T * * * 103321174 GAAAAGGGCTTTGCCCTAGTTTAT 1 TAAAAGGGCTATGCCCCAGTTTAT * * 103321198 CAAAAAGGGCTTTGCCCCAG-TTAT 1 -TAAAAGGGCTATGCCCCAGTTTAT * 103321222 TAAAAGAGGCTAGGCCTCCAGTT 1 TAAAAG-GGCTATGCC-CCAGTT 103321245 ATATGATAAA Statistics Matches: 58, Mismatches: 9, Indels: 7 0.78 0.12 0.09 Matches are distributed among these distances: 23 5 0.09 24 11 0.19 25 41 0.71 26 1 0.02 ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26 Consensus pattern (24 bp): TAAAAGGGCTATGCCCCAGTTTAT Found at i:103321477 original size:31 final size:31 Alignment explanation
Indices: 103321439--103321521 Score: 125 Period size: 31 Copynumber: 2.7 Consensus size: 31 103321429 CGCTTACAGT * 103321439 AAAGGCTTTGACCCAGTGATATGATTTATGA 1 AAAGGCTTTGGCCCAGTGATATGATTTATGA * 103321470 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTTGGCCCAGTGATATGATTTATGA * 103321501 GAAGGC-TTGGCCCAGT-ATATG 1 AAAGGCTTTGGCCCAGTGATATG 103321522 TCGAGATTGA Statistics Matches: 48, Mismatches: 4, Indels: 2 0.89 0.07 0.04 Matches are distributed among these distances: 29 5 0.10 30 9 0.19 31 34 0.71 ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29 Consensus pattern (31 bp): AAAGGCTTTGGCCCAGTGATATGATTTATGA Found at i:103328798 original size:44 final size:44 Alignment explanation
Indices: 103328731--103328819 Score: 160 Period size: 44 Copynumber: 2.0 Consensus size: 44 103328721 CTTCTGAGAT * 103328731 GTTTTGTTTTATAATTATAAACTAAACCCCCTAAATACCTAAGG 1 GTTTTCTTTTATAATTATAAACTAAACCCCCTAAATACCTAAGG * 103328775 GTTTTCTTTTATAATTATGAACTAAACCCCCTAAATACCTAAGG 1 GTTTTCTTTTATAATTATAAACTAAACCCCCTAAATACCTAAGG 103328819 G 1 G 103328820 GAATGAAACC Statistics Matches: 43, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 44 43 1.00 ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36 Consensus pattern (44 bp): GTTTTCTTTTATAATTATAAACTAAACCCCCTAAATACCTAAGG Found at i:103337243 original size:12 final size:13 Alignment explanation
Indices: 103337207--103337244 Score: 51 Period size: 14 Copynumber: 2.9 Consensus size: 13 103337197 AAATATTTGA 103337207 CTTGTTCTTAATT 1 CTTGTTCTTAATT * 103337220 ATGTGTTCTTAATT 1 CT-TGTTCTTAATT 103337234 CTTG-TCTTAAT 1 CTTGTTCTTAAT 103337245 ATTCCAGGAT Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 12 7 0.32 13 3 0.14 14 12 0.55 ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58 Consensus pattern (13 bp): CTTGTTCTTAATT Found at i:103340362 original size:18 final size:19 Alignment explanation
Indices: 103340339--103340374 Score: 56 Period size: 18 Copynumber: 1.9 Consensus size: 19 103340329 TAGTCTAAAT * 103340339 TTAAATCTCT-AATTTCAC 1 TTAAATCCCTAAATTTCAC 103340357 TTAAATCCCTAAATTTCA 1 TTAAATCCCTAAATTTCA 103340375 AAATTTTCTC Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 18 9 0.56 19 7 0.44 ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42 Consensus pattern (19 bp): TTAAATCCCTAAATTTCAC Found at i:103340752 original size:19 final size:20 Alignment explanation
Indices: 103340725--103340762 Score: 51 Period size: 19 Copynumber: 1.9 Consensus size: 20 103340715 ATACTTACTT 103340725 AAATAATAAGTAAATATATA 1 AAATAATAAGTAAATATATA * * 103340745 AAAT-ATAATTTAATATAT 1 AAATAATAAGTAAATATAT 103340763 GAATTTTATT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 19 12 0.75 20 4 0.25 ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37 Consensus pattern (20 bp): AAATAATAAGTAAATATATA Found at i:103341159 original size:12 final size:12 Alignment explanation
Indices: 103341142--103341168 Score: 54 Period size: 12 Copynumber: 2.2 Consensus size: 12 103341132 GTACCTATAG 103341142 TAGATTTTTCAC 1 TAGATTTTTCAC 103341154 TAGATTTTTCAC 1 TAGATTTTTCAC 103341166 TAG 1 TAG 103341169 GGTCCATACT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48 Consensus pattern (12 bp): TAGATTTTTCAC Found at i:103344431 original size:27 final size:27 Alignment explanation
Indices: 103344038--103344415 Score: 494 Period size: 27 Copynumber: 14.0 Consensus size: 27 103344028 CCAAATTGAT * * 103344038 AAATGACTATTTTTCCCTTATGTGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * 103344065 AAATGACTGTTTTGCCCTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * 103344092 AAATGACTATTTTTCCCTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * * 103344119 AAATGACTGTTTTGCCCTTATGTGGTA 1 AAATGACTATTTTGCCCTTATATGGTA 103344146 AAATGACTATTTTGCCCTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA 103344173 AAATGACTATTTTGCCCTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * * * * 103344200 GAATGACTGTTTTGCCTTTATGTGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * * 103344227 AAATGACTGTTTTGCCCTTATGTGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * * 103344254 AAATGACTATTTTACCTTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * * * * * 103344281 AAACGTCTGTTTTGCCTTTATAAGGTA 1 AAATGACTATTTTGCCCTTATATGGTA * 103344308 AAATGACTATTTTGCCCTTCTGA-GGTA 1 AAATGACTATTTTGCCCTTAT-ATGGTA * 103344335 AAATGATTGA-TTTGCCCTTATGA-GGTA 1 AAATGACT-ATTTTGCCCTTAT-ATGGTA * * 103344362 AAATAACTATTTTGCCCTTATGT-GTA 1 AAATGACTATTTTGCCCTTATATGGTA 103344388 AAATGACTATTTTGCCCTTATATGGTA 1 AAATGACTATTTTGCCCTTATATGGTA 103344415 A 1 A 103344416 GATAACTGAT Statistics Matches: 309, Mismatches: 37, Indels: 10 0.87 0.10 0.03 Matches are distributed among these distances: 26 25 0.08 27 282 0.91 28 2 0.01 ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41 Consensus pattern (27 bp): AAATGACTATTTTGCCCTTATATGGTA Found at i:103346339 original size:48 final size:48 Alignment explanation
Indices: 103346261--103346358 Score: 151 Period size: 48 Copynumber: 2.0 Consensus size: 48 103346251 TTGTATGAGT * ** * 103346261 TGATATAGATCCCTAGGAAAATTGATTAGCTTGAGAAAAGGACGAAAA 1 TGATATAGATCCCTAGAAAAATCAAATAGCTTGAGAAAAGGACGAAAA * 103346309 TGATATAGATCCCTAGAAAAATCAAATAGCTTGAGAAAAGGATGAAAA 1 TGATATAGATCCCTAGAAAAATCAAATAGCTTGAGAAAAGGACGAAAA 103346357 TG 1 TG 103346359 CTTAGATTTC Statistics Matches: 45, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 48 45 1.00 ACGTcount: A:0.46, C:0.10, G:0.21, T:0.22 Consensus pattern (48 bp): TGATATAGATCCCTAGAAAAATCAAATAGCTTGAGAAAAGGACGAAAA Found at i:103346778 original size:41 final size:41 Alignment explanation
Indices: 103346677--103346910 Score: 175 Period size: 41 Copynumber: 6.0 Consensus size: 41 103346667 AGAAAAAAGA * * * * 103346677 TGAATTGCAATTACGTGCCCTTGTTTGTACTTCGGTACCCC 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT * * * * 103346718 TGAATTACACTTCCATGCCCCTGTTTGTACTTTGATACCCT 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT * * 103346759 TGAATTACACTTATGTGCCCC------TA-TT-TGTA---T 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT * * 103346789 TGAATTACATTTACGTTCCCCTGTTTGTACTTCGGTACCCT 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT * * ** * * * 103346830 TAAATTTCACTTGTGTGCCTCTATTTGTACTTCGGTACCCC 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT * * * * * 103346871 TAAATTACACATATGTGCCCCTGTTTGTACTACAGTACCC 1 TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCC 103346911 CTAGATGTAC Statistics Matches: 149, Mismatches: 33, Indels: 22 0.73 0.16 0.11 Matches are distributed among these distances: 30 19 0.13 33 2 0.01 34 2 0.01 35 2 0.01 36 2 0.01 37 2 0.01 38 3 0.02 41 117 0.79 ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39 Consensus pattern (41 bp): TGAATTACACTTACGTGCCCCTGTTTGTACTTCGGTACCCT Found at i:103346794 original size:30 final size:30 Alignment explanation
Indices: 103346758--103346817 Score: 84 Period size: 30 Copynumber: 2.0 Consensus size: 30 103346748 TTTGATACCC * 103346758 TTGAATTACACTTATGTGCCCCTATTTGTA 1 TTGAATTACACTTACGTGCCCCTATTTGTA * * * 103346788 TTGAATTACATTTACGTTCCCCTGTTTGTA 1 TTGAATTACACTTACGTGCCCCTATTTGTA 103346818 CTTCGGTACC Statistics Matches: 26, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 30 26 1.00 ACGTcount: A:0.22, C:0.20, G:0.13, T:0.45 Consensus pattern (30 bp): TTGAATTACACTTACGTGCCCCTATTTGTA Found at i:103346857 original size:112 final size:112 Alignment explanation
Indices: 103346677--103346899 Score: 284 Period size: 112 Copynumber: 2.0 Consensus size: 112 103346667 AGAAAAAAGA * * * * 103346677 TGAATTGCAATTACGTGCCCTTGTTTGTACTTCGGTACCCCTGAATTACACTTCCATGCCCCTGT 1 TGAATTACAATTACGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTACACTTCCATGCCCCTAT * * * * 103346742 TTGTACTTTGATACCCTTGAATTACACTTATGTGCCCCTATTTGTAT 66 TTGTACTTCGATACCCCTAAATTACACATATGTGCCCCTATTTGTAT * * * * *** * 103346789 TGAATTACATTTACGTTCCCCTGTTTGTACTTCGGTACCCTTAAATTTCACTTGTGTGCCTCTAT 1 TGAATTACAATTACGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTACACTTCCATGCCCCTAT * * 103346854 TTGTACTTCGGTACCCCTAAATTACACATATGTGCCCCTGTTTGTA 66 TTGTACTTCGATACCCCTAAATTACACATATGTGCCCCTATTTGTA 103346900 CTACAGTACC Statistics Matches: 93, Mismatches: 18, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 112 93 1.00 ACGTcount: A:0.20, C:0.26, G:0.15, T:0.40 Consensus pattern (112 bp): TGAATTACAATTACGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTACACTTCCATGCCCCTAT TTGTACTTCGATACCCCTAAATTACACATATGTGCCCCTATTTGTAT Found at i:103353326 original size:23 final size:23 Alignment explanation
Indices: 103353296--103353340 Score: 81 Period size: 23 Copynumber: 2.0 Consensus size: 23 103353286 CACGAATGTG 103353296 TCGCCAGGCTATGTAACAACCTC 1 TCGCCAGGCTATGTAACAACCTC * 103353319 TCGCCAGGCTGTGTAACAACCT 1 TCGCCAGGCTATGTAACAACCT 103353341 GTGACCACAT Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 23 21 1.00 ACGTcount: A:0.24, C:0.33, G:0.20, T:0.22 Consensus pattern (23 bp): TCGCCAGGCTATGTAACAACCTC Found at i:103354928 original size:15 final size:17 Alignment explanation
Indices: 103354904--103354937 Score: 54 Period size: 16 Copynumber: 2.1 Consensus size: 17 103354894 GCTAGGGACT 103354904 AAATTGAAAAG-TGATA 1 AAATTGAAAAGATGATA 103354920 AAATT-AAAAGATGATA 1 AAATTGAAAAGATGATA 103354936 AA 1 AA 103354938 TAATTAAATA Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 15 5 0.29 16 12 0.71 ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24 Consensus pattern (17 bp): AAATTGAAAAGATGATA Found at i:103356598 original size:31 final size:31 Alignment explanation
Indices: 103356560--103356659 Score: 146 Period size: 31 Copynumber: 3.2 Consensus size: 31 103356550 AATCAAAATG 103356560 AGAATCAGAATCAGAATCAGGTGACAGAATC 1 AGAATCAGAATCAGAATCAGGTGACAGAATC * * 103356591 AGAATCAGAATCAGAATTAGGTGACAGAATT 1 AGAATCAGAATCAGAATCAGGTGACAGAATC * * * 103356622 AGAATCAGGATCAGTATCAGGTAACAGAATC 1 AGAATCAGAATCAGAATCAGGTGACAGAATC * 103356653 AAAATCA 1 AGAATCA 103356660 AAATGTGAAT Statistics Matches: 61, Mismatches: 8, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 31 61 1.00 ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19 Consensus pattern (31 bp): AGAATCAGAATCAGAATCAGGTGACAGAATC Found at i:103356626 original size:6 final size:6 Alignment explanation
Indices: 103356548--103356607 Score: 68 Period size: 6 Copynumber: 9.8 Consensus size: 6 103356538 TATCATAACT * * * 103356548 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC 1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC 103356597 AGAATC AGAAT 1 AGAATC AGAAT 103356608 TAGGTGACAG Statistics Matches: 45, Mismatches: 6, Indels: 6 0.79 0.11 0.11 Matches are distributed among these distances: 5 1 0.02 6 40 0.89 7 3 0.07 8 1 0.02 ACGTcount: A:0.50, C:0.13, G:0.20, T:0.17 Consensus pattern (6 bp): AGAATC Found at i:103356845 original size:2 final size:2 Alignment explanation
Indices: 103356838--103356869 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 103356828 ACCAGAACAG 103356838 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 103356870 GTGTGTGGCG Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:103356954 original size:27 final size:26 Alignment explanation
Indices: 103356906--103356957 Score: 68 Period size: 27 Copynumber: 2.0 Consensus size: 26 103356896 GCGAGGCTGC * 103356906 CAGATATTGTGACGAAGTCACCAGAA 1 CAGATATTGTGACGAAGCCACCAGAA * * 103356932 CAGATATATGTGGCGAGGCCACCAGA 1 CAGATAT-TGTGACGAAGCCACCAGA 103356958 TTGCAGCGAG Statistics Matches: 22, Mismatches: 3, Indels: 1 0.85 0.12 0.04 Matches are distributed among these distances: 26 7 0.32 27 15 0.68 ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAGAA Found at i:103357223 original size:27 final size:27 Alignment explanation
Indices: 103357193--103357602 Score: 480 Period size: 27 Copynumber: 15.2 Consensus size: 27 103357183 AACACCCTAG * 103357193 GGGTAAAATGGTAATAT-TATAAATCGA 1 GGGTAAAACGGTAAT-TCTATAAATCGA * * 103357220 GGGTAAAACGGTAATTTTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA 103357247 GGGTAAAACGGTAATTCTATAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * ** * * 103357274 GGATAAAATAGTAATTTTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * * 103357301 GGGTAAAACGATAATTCTGTAAATTGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * 103357328 GGGTAAAACAGTAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * 103357355 GGGTAAAACGATAATTTTATAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA ** 103357382 GGGTAAAATAGTAATTCTATAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA ** 103357409 GGGTAAAATAGTAATTCTATAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * * * 103357436 GGGTAAAACGATAATTTTGTAAGTCGA 1 GGGTAAAACGGTAATTCTATAAATCGA ** * 103357463 GGGTAAAACAATAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * * 103357490 GGGTAAAATGGTAATTTTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA ** * 103357517 GGGTAAAATAGTAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * 103357544 GGGTAAAATGGTAATTTTATAAATCGA 1 GGGTAAAACGGTAATTCTATAAATCGA * * 103357571 GGGTAAAACGATAATTCTATAAATCAA 1 GGGTAAAACGGTAATTCTATAAATCGA 103357598 GGGTA 1 GGGTA 103357603 CTTTGGTAAT Statistics Matches: 334, Mismatches: 48, Indels: 2 0.87 0.12 0.01 Matches are distributed among these distances: 26 1 0.00 27 333 1.00 ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29 Consensus pattern (27 bp): GGGTAAAACGGTAATTCTATAAATCGA Found at i:103357260 original size:54 final size:54 Alignment explanation
Indices: 103357193--103357629 Score: 547 Period size: 54 Copynumber: 8.1 Consensus size: 54 103357183 AACACCCTAG * * * 103357193 GGGTAAAATGGTAATAT-TATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA 1 GGGTAAAACGATAAT-TCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * * 103357247 GGGTAAAACGGTAATTCTATAAATCGAGGATAAAATAGTAATTTTGTAAATCGA 1 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * ** * 103357301 GGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAATCGA 1 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * * * 103357355 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGA 1 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * * * 103357409 GGGTAAAA-TAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAGTCGA 1 GGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * 103357463 GGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA 1 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * * * 103357517 GGGTAAAA-TAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGA 1 GGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA * *** ** * 103357571 GGGTAAAACGATAATTCTATAAATCAAGGGTACTTTGGTAATTTTACAAGTCGA 1 GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA 103357625 GGGTA 1 GGGTA 103357630 TTTCAGTAAT Statistics Matches: 340, Mismatches: 38, Indels: 10 0.88 0.10 0.03 Matches are distributed among these distances: 53 3 0.01 54 335 0.99 55 2 0.01 ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30 Consensus pattern (54 bp): GGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA Found at i:103357612 original size:27 final size:27 Alignment explanation
Indices: 103357582--103357748 Score: 169 Period size: 27 Copynumber: 6.2 Consensus size: 27 103357572 GGTAAAACGA * * * 103357582 TAATTCTATAAATCAAGGGTACTTTGG 1 TAATTTTACAAATCAAGGGTATTTTGG * * ** 103357609 TAATTTTACAAGTCGAGGGTATTTCAG 1 TAATTTTACAAATCAAGGGTATTTTGG * 103357636 TAATTTCACAAATC-AGAGGTATTTTGG 1 TAATTTTACAAATCAAG-GGTATTTTGG * * 103357663 TAATTTTACAAA-CTATGGGTATTTTTG 1 TAATTTTACAAATC-AAGGGTATTTTGG * 103357690 TAATTTTACAAA-CTAGGGGTATTTTGG 1 TAATTTTACAAATC-AAGGGTATTTTGG * * 103357717 TAATTTTATAAACCAAGGGTATTTTGG 1 TAATTTTACAAATCAAGGGTATTTTGG 103357744 TAATT 1 TAATT 103357749 CTACCTTACA Statistics Matches: 118, Mismatches: 18, Indels: 8 0.82 0.12 0.06 Matches are distributed among these distances: 26 3 0.03 27 113 0.96 28 2 0.02 ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41 Consensus pattern (27 bp): TAATTTTACAAATCAAGGGTATTTTGG Found at i:103357667 original size:81 final size:81 Alignment explanation
Indices: 103357582--103357752 Score: 186 Period size: 81 Copynumber: 2.1 Consensus size: 81 103357572 GGTAAAACGA * * 103357582 TAATTCTATAAA-TCAAGGGTACTTTGGTAATTTTACAAGTCGA-GGGTATTTCAGTAATTTCAC 1 TAATTCTACAAACT-AAGGGTACTTTGGTAATTTTACAA-ACGAGGGGTATTTCAGTAATTTCAC * 103357645 AAATC-AGAGGTATTTTGG 64 AAACCAAG-GGTATTTTGG * * * * * ** * * 103357663 TAATTTTACAAACTATGGGTATTTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAA 1 TAATTCTACAAACTAAGGGTACTTTGGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAA 103357728 ACCAAGGGTATTTTGG 66 ACCAAGGGTATTTTGG 103357744 TAATTCTAC 1 TAATTCTAC 103357753 CTTACAAGGG Statistics Matches: 74, Mismatches: 13, Indels: 6 0.80 0.14 0.06 Matches are distributed among these distances: 80 2 0.03 81 69 0.93 82 3 0.04 ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40 Consensus pattern (81 bp): TAATTCTACAAACTAAGGGTACTTTGGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAA ACCAAGGGTATTTTGG Found at i:103357760 original size:27 final size:27 Alignment explanation
Indices: 103357730--103357812 Score: 112 Period size: 27 Copynumber: 3.1 Consensus size: 27 103357720 TTTTATAAAC ** * 103357730 CAAGGGTATTTTGGTAATTCTACCTTA 1 CAAGGGTATTTCAGTAATTCTACCCTA * 103357757 CAAGGGCATTTCAGTAATTCTACCCTA 1 CAAGGGTATTTCAGTAATTCTACCCTA * * 103357784 CAAGGGTATTTCAGTAATTTTAGCCTA 1 CAAGGGTATTTCAGTAATTCTACCCTA 103357811 CA 1 CA 103357813 GATATGAGAT Statistics Matches: 49, Mismatches: 7, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 27 49 1.00 ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35 Consensus pattern (27 bp): CAAGGGTATTTCAGTAATTCTACCCTA Found at i:103359722 original size:6 final size:6 Alignment explanation
Indices: 103359699--103359764 Score: 62 Period size: 6 Copynumber: 10.8 Consensus size: 6 103359689 TATCAAAACT * * * * 103359699 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC 1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC * 103359748 AGAATC AGAATT AGAAT 1 AGAATC AGAATC AGAAT 103359765 TAGGTGACAA Statistics Matches: 48, Mismatches: 9, Indels: 6 0.76 0.14 0.10 Matches are distributed among these distances: 5 1 0.02 6 43 0.90 7 3 0.06 8 1 0.02 ACGTcount: A:0.50, C:0.11, G:0.20, T:0.20 Consensus pattern (6 bp): AGAATC Found at i:103359740 original size:37 final size:36 Alignment explanation
Indices: 103359699--103359820 Score: 112 Period size: 37 Copynumber: 3.5 Consensus size: 36 103359689 TATCAAAACT * 103359699 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC 1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-AC * * * * 103359736 AGAATTAGAATCAGAATCAGAATTAGAATTAGGT-- 1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC * * 103359770 -G-A-CAAAATTAGAATTAGAATCA-ATATCAGGTAAC 1 AGAATCAAAATCAGAATCAGAATCAGA-ATCAGGT-AC 103359804 AGAATCAAAATCAGAAT 1 AGAATCAAAATCAGAAT 103359821 GTGAATGCAA Statistics Matches: 66, Mismatches: 12, Indels: 14 0.72 0.13 0.15 Matches are distributed among these distances: 30 1 0.02 31 21 0.32 32 1 0.02 33 1 0.02 35 1 0.02 36 1 0.02 37 40 0.61 ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21 Consensus pattern (36 bp): AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC Found at i:103359749 original size:31 final size:31 Alignment explanation
Indices: 103359711--103359820 Score: 96 Period size: 31 Copynumber: 3.4 Consensus size: 31 103359701 AATCAAAATG 103359711 AGAATCAGAATCAGAATCAGGTGACAGAATT 1 AGAATCAGAATCAGAATCAGGTGACAGAATT * * 103359742 AGAATCAGAATCAGAATTAGAATTAGGTGACAAAATT 1 AGAATCAGAATC------AGAATCAGGTGACAGAATT * * * 103359779 AGAATTAGAATCA-ATATCAGGTAACAGAATC 1 AGAATCAGAATCAGA-ATCAGGTGACAGAATT * 103359810 AAAATCAGAAT 1 AGAATCAGAAT 103359821 GTGAATGCAA Statistics Matches: 63, Mismatches: 9, Indels: 14 0.73 0.10 0.16 Matches are distributed among these distances: 30 1 0.02 31 34 0.54 37 28 0.44 ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22 Consensus pattern (31 bp): AGAATCAGAATCAGAATCAGGTGACAGAATT Found at i:103360360 original size:27 final size:27 Alignment explanation
Indices: 103360330--103360684 Score: 404 Period size: 27 Copynumber: 13.1 Consensus size: 27 103360320 AACATCCTAG * * * 103360330 GGGTAAAATGGTAATTTTATAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * 103360357 GGGTAAAACGGTAATTCTATAAATCAA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * * 103360384 GGGTAAAACAGTAATTCTATAAATTGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * 103360411 GGGTAAAACTGTAATTCTGTAAATTGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * ** * 103360438 GGATAAAATAGTAATTTTGTAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * 103360465 GGGTAAAACGATAATTCTGTAAATTGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * 103360492 GGGTAAAACAGTAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * ** 103360519 GGGTAAAACGATAATTTTGTAAATTAA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * * 103360546 AGGTAAAACAGTAATTCTTTAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * 103360573 GGGTAAAATGGTAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * * * 103360600 AGGTAAAACGATAATTTTGTAAATTGA 1 GGGTAAAACGGTAATTCTGTAAATCGA ** 103360627 GGGTAAAATAGTAATTCTGTAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA * * * 103360654 GGGTAAAATGATAATTCTATAAATCGA 1 GGGTAAAACGGTAATTCTGTAAATCGA 103360681 GGGT 1 GGGT 103360685 TCTTTGGTTA Statistics Matches: 276, Mismatches: 52, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 27 276 1.00 ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30 Consensus pattern (27 bp): GGGTAAAACGGTAATTCTGTAAATCGA Found at i:103360724 original size:27 final size:26 Alignment explanation
Indices: 103360694--103360834 Score: 95 Period size: 27 Copynumber: 5.2 Consensus size: 26 103360684 TTCTTTGGTT * 103360694 ATTTTACAAGTCGAGGGTATTTCAATA 1 ATTTTACAAGTC-AGGGTATTTCAGTA * * 103360721 ATTTTACAGGTCAAAGGTATTTCAGTA 1 ATTTTACAAGTC-AGGGTATTTCAGTA * * ** 103360748 ATTTCACAAATCAGAGGTATTTTGGTA 1 ATTTTACAAGTCAG-GGTATTTCAGTA * ** 103360775 ATTTTACAA-ACTAGGGGTATTTTGGTA 1 ATTTTACAAGTC-A-GGGTATTTCAGTA ** ** 103360802 ATTTTACAAACCAGGGGTATTTTGGTA 1 ATTTTACAAGTCA-GGGTATTTCAGTA 103360829 ATTTTA 1 ATTTTA 103360835 TAAACCAAAG Statistics Matches: 97, Mismatches: 13, Indels: 8 0.82 0.11 0.07 Matches are distributed among these distances: 26 2 0.02 27 93 0.96 28 2 0.02 ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39 Consensus pattern (26 bp): ATTTTACAAGTCAGGGTATTTCAGTA Found at i:103360839 original size:27 final size:27 Alignment explanation
Indices: 103360735--103360858 Score: 167 Period size: 27 Copynumber: 4.6 Consensus size: 27 103360725 TACAGGTCAA ** * * 103360735 AGGTATTTCAGTAATTTCACAAATCAG 1 AGGTATTTTGGTAATTTTACAAACCAG * 103360762 AGGTATTTTGGTAATTTTACAAACTAG 1 AGGTATTTTGGTAATTTTACAAACCAG * 103360789 GGGTATTTTGGTAATTTTACAAACCAG 1 AGGTATTTTGGTAATTTTACAAACCAG * * * 103360816 GGGTATTTTGGTAATTTTATAAACCAA 1 AGGTATTTTGGTAATTTTACAAACCAG 103360843 AGGTATTTTGGTAATT 1 AGGTATTTTGGTAATT 103360859 CTACCCTACA Statistics Matches: 87, Mismatches: 10, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 27 87 1.00 ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40 Consensus pattern (27 bp): AGGTATTTTGGTAATTTTACAAACCAG Found at i:103360909 original size:27 final size:27 Alignment explanation
Indices: 103360844--103360922 Score: 86 Period size: 27 Copynumber: 2.9 Consensus size: 27 103360834 ATAAACCAAA * * 103360844 GGTATTTTGGTAATTCTACCCTACAGG 1 GGTATTTTAGTAATTCTACCCTACAAG ** * 103360871 GGCGTTTTAGTAATTCTACCTTACAAG 1 GGTATTTTAGTAATTCTACCCTACAAG * * * 103360898 GGTATTTCAGTAATGCTAGCCTACA 1 GGTATTTTAGTAATTCTACCCTACA 103360923 GATATGAGAT Statistics Matches: 41, Mismatches: 11, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 27 41 1.00 ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35 Consensus pattern (27 bp): GGTATTTTAGTAATTCTACCCTACAAG Found at i:103360911 original size:81 final size:81 Alignment explanation
Indices: 103360736--103360911 Score: 176 Period size: 81 Copynumber: 2.2 Consensus size: 81 103360726 ACAGGTCAAA * * * * * 103360736 GGTATTTCAGTAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT 1 GGTATTTCAGTAATTTCACAAACCAAAGGTATTTTGGTAATTCTACAAACTAGGGGCATTTTAGT * * 103360801 AATTTTACAAACCAGG 66 AATTCTACAAACCAAG ** * * ** * 103360817 GGTATTTTGGTAATTTTATAAACCAAAGGTATTTTGGTAATTCTACCCTAC-AGGGGCGTTTTAG 1 GGTATTTCAGTAATTTCACAAACCAAAGGTATTTTGGTAATTCTA-CAAACTAGGGGCATTTTAG ** 103360881 TAATTCTACCTTA-CAAG 65 TAATTCTA-CAAACCAAG 103360898 GGTATTTCAGTAAT 1 GGTATTTCAGTAAT 103360912 GCTAGCCTAC Statistics Matches: 75, Mismatches: 18, Indels: 4 0.77 0.19 0.04 Matches are distributed among these distances: 81 70 0.93 82 5 0.07 ACGTcount: A:0.30, C:0.12, G:0.19, T:0.38 Consensus pattern (81 bp): GGTATTTCAGTAATTTCACAAACCAAAGGTATTTTGGTAATTCTACAAACTAGGGGCATTTTAGT AATTCTACAAACCAAG Found at i:103365111 original size:16 final size:16 Alignment explanation
Indices: 103365090--103365121 Score: 55 Period size: 16 Copynumber: 2.0 Consensus size: 16 103365080 TATGTAATGC 103365090 CCCAAAAATCCTGAAA 1 CCCAAAAATCCTGAAA * 103365106 CCCAAAAATTCTGAAA 1 CCCAAAAATCCTGAAA 103365122 TCCAGAACTT Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16 Consensus pattern (16 bp): CCCAAAAATCCTGAAA Found at i:103366674 original size:29 final size:29 Alignment explanation
Indices: 103366632--103366738 Score: 146 Period size: 29 Copynumber: 3.7 Consensus size: 29 103366622 ATAATATGAT * 103366632 TTGGGCCTAATGGGCCATATGAATGTGAA 1 TTGGGCCTAGTGGGCCATATGAATGTGAA * * 103366661 TTGGGCCTAGTGGGCCATAAGAATATGAA 1 TTGGGCCTAGTGGGCCATATGAATGTGAA * * 103366690 CTGGGCC-AGATGGGCCATATGAATGAG-A 1 TTGGGCCTAG-TGGGCCATATGAATGTGAA 103366718 TTGGGCCTAGTGGGCCATATG 1 TTGGGCCTAGTGGGCCATATG 103366739 CATATATGTA Statistics Matches: 68, Mismatches: 8, Indels: 5 0.84 0.10 0.06 Matches are distributed among these distances: 28 20 0.29 29 48 0.71 ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24 Consensus pattern (29 bp): TTGGGCCTAGTGGGCCATATGAATGTGAA Found at i:103366714 original size:58 final size:57 Alignment explanation
Indices: 103366624--103366736 Score: 174 Period size: 58 Copynumber: 2.0 Consensus size: 57 103366614 GCATGAGTAT ** * 103366624 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG 1 AATATGAACTGGGCCTAATGGGCCATATGAATGAG-ATTGGGCCTAGTGGGCCATAAG 103366682 AATATGAACTGGGCC-AGATGGGCCATATGAATGAGATTGGGCCTAGTGGGCCATA 1 AATATGAACTGGGCCTA-ATGGGCCATATGAATGAGATTGGGCCTAGTGGGCCATA 103366737 TGCATATATG Statistics Matches: 51, Mismatches: 3, Indels: 3 0.89 0.05 0.05 Matches are distributed among these distances: 57 21 0.41 58 30 0.59 ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25 Consensus pattern (57 bp): AATATGAACTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAGTGGGCCATAAG Found at i:103368233 original size:37 final size:37 Alignment explanation
Indices: 103368155--103368239 Score: 98 Period size: 37 Copynumber: 2.3 Consensus size: 37 103368145 TATGAGTTTG * ** 103368155 TGTAAGACCATAGCTAGGCTATGGGATCATAATGATG 1 TGTAAGACCATAGCTAGGCTATGGGATCATAATCACA * * * * * 103368192 TGTAAGACCATAGCTGGGCTATGGTATTATGATCCCA 1 TGTAAGACCATAGCTAGGCTATGGGATCATAATCACA 103368229 TGTAAGACCAT 1 TGTAAGACCAT 103368240 GTCTGGGACA Statistics Matches: 40, Mismatches: 8, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 37 40 1.00 ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28 Consensus pattern (37 bp): TGTAAGACCATAGCTAGGCTATGGGATCATAATCACA Found at i:103368292 original size:48 final size:48 Alignment explanation
Indices: 103368221--103368399 Score: 304 Period size: 48 Copynumber: 3.7 Consensus size: 48 103368211 TATGGTATTA 103368221 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG 1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG * * * 103368269 TGATCCCATGTAAGACTATGTCTGCGATATGGCATTGGCATCGATATG 1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG * ** 103368317 TGATCCCATGTAAGACCATGTTTGGGACATGAAATTGGCATCGATATG 1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG 103368365 TGATCCCATGTAAGACCATGTCTGGGACATGGCAT 1 TGATCCCATGTAAGACCATGTCTGGGACATGGCAT 103368400 CGATATGAGA Statistics Matches: 119, Mismatches: 12, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 48 119 1.00 ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28 Consensus pattern (48 bp): TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG Found at i:103372909 original size:26 final size:27 Alignment explanation
Indices: 103372871--103372929 Score: 93 Period size: 26 Copynumber: 2.2 Consensus size: 27 103372861 TGTAGGGTAG * 103372871 AATTACTGAAATACCCTTAGTTTACAA 1 AATTACTGAAATACCATTAGTTTACAA * 103372898 AATTACTG-AATACCATTGGTTTACAA 1 AATTACTGAAATACCATTAGTTTACAA 103372924 AATTAC 1 AATTAC 103372930 CAAATTACCC Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 26 22 0.73 27 8 0.27 ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34 Consensus pattern (27 bp): AATTACTGAAATACCATTAGTTTACAA Found at i:103373141 original size:80 final size:82 Alignment explanation
Indices: 103372871--103373239 Score: 262 Period size: 80 Copynumber: 4.6 Consensus size: 82 103372861 TGTAGGGTAG * * ** * * * 103372871 AATTACTGAAATACCCTT-AGTTTACAAAATTA-CTGAATACCATTGGTTTACAAAATTACCAAA 1 AATTACTAAAATACCCTTGA-TTTGCAAAATTATCAAAATACCCTTGATTTACAAAATTACAAAA * * 103372934 TTA-CCCTCGA-TTAGC-AA 65 ATACCCCT-GACTT-TCAAA * * * * * * *** 103372951 AATTACCAAAATGCCCCTGGTTCGTAAAATTA-CAAAAATA-CCTCTGATTTGTTAAATTACAAA 1 AATTACTAAAATACCCTTGATTTGCAAAATTATC-AAAATACCCT-TGATTTACAAAATTACAAA * 103373014 AATA-CCCTCGACCTGT--AA 64 AATACCCCT-GA-CTTTCAAA ** * * ** 103373032 AATTACTAAAATACCCTTGACGTGTAAAATTATCAAAATGCCCTTGATTTTTAAAATTATC-AAA 1 AATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATACCCTTGATTTACAAAATTA-CAAAA ** 103373096 ATACCCCTGA-TTT-GGA 65 ATACCCCTGACTTTCAAA * * 103373112 AATTACTAAAATACCCTTGATTTGGAAAATTAT-AGAAATACCCCTGATTTACAAAATTACAAAA 1 AATTACTAAAATACCCTTGATTTGCAAAATTATCA-AAATACCCTTGATTTACAAAATTACAAAA * 103373176 ATACCCTTGACTTTCAAA 65 ATACCCCTGACTTTCAAA * * * 103373194 AATTACAAAAATACCATTGGTTTGCAAAATTATCAAAATACCCTTG 1 AATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATACCCTTG 103373240 GTTTGTAGAT Statistics Matches: 228, Mismatches: 46, Indels: 28 0.75 0.15 0.09 Matches are distributed among these distances: 79 4 0.02 80 89 0.39 81 84 0.37 82 49 0.21 83 2 0.01 ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31 Consensus pattern (82 bp): AATTACTAAAATACCCTTGATTTGCAAAATTATCAAAATACCCTTGATTTACAAAATTACAAAAA TACCCCTGACTTTCAAA Found at i:103373221 original size:28 final size:27 Alignment explanation
Indices: 103372879--103373244 Score: 253 Period size: 27 Copynumber: 13.6 Consensus size: 27 103372869 AGAATTACTG * * 103372879 AAATACCCTT-AGTTTACAAAATTAC-T 1 AAATACCCTTGA-TTTGCAAAATTACAA * * * * * 103372905 GAATACCATTGGTTTACAAAATTACCA 1 AAATACCCTTGATTTGCAAAATTACAA * * * * 103372932 AATTACCCTCGATTAGCAAAATTACCA 1 AAATACCCTTGATTTGCAAAATTACAA * * * * * 103372959 AAATGCCCCTGGTTCGTAAAATTACAA 1 AAATACCCTTGATTTGCAAAATTACAA ** 103372986 AAATA-CCTCTGATTTGTTAAATTACAA 1 AAATACCCT-TGATTTGCAAAATTACAA * ** * * 103373013 AAATACCCTCGACCTGTAAAATTACTA 1 AAATACCCTTGATTTGCAAAATTACAA ** * 103373040 AAATACCCTTGACGTGTAAAATTATC-A 1 AAATACCCTTGATTTGCAAAATTA-CAA * ** 103373067 AAATGCCCTTGATTTTTAAAATTATC-A 1 AAATACCCTTGATTTGCAAAATTA-CAA * * * 103373094 AAATACCCCTGATTTG-GAAATTACTA 1 AAATACCCTTGATTTGCAAAATTACAA * * * 103373120 AAATACCCTTGATTTGGAAAATTATAG 1 AAATACCCTTGATTTGCAAAATTACAA * * 103373147 AAATACCCCTGATTTACAAAATTACAA 1 AAATACCCTTGATTTGCAAAATTACAA 103373174 AAATACCCTTGACTTT-CAAAAATTACAA 1 AAATACCCTTGA-TTTGC-AAAATTACAA * * 103373202 AAATACCATTGGTTTGCAAAATTATC-A 1 AAATACCCTTGATTTGCAAAATTA-CAA * 103373229 AAATACCCTTGGTTTG 1 AAATACCCTTGATTTG 103373245 TAGATTTACC Statistics Matches: 276, Mismatches: 53, Indels: 21 0.79 0.15 0.06 Matches are distributed among these distances: 25 1 0.00 26 45 0.16 27 201 0.73 28 29 0.11 ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31 Consensus pattern (27 bp): AAATACCCTTGATTTGCAAAATTACAA Found at i:103376555 original size:37 final size:37 Alignment explanation
Indices: 103376492--103376600 Score: 175 Period size: 37 Copynumber: 2.9 Consensus size: 37 103376482 AGCTCAGACG * 103376492 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA 1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA * 103376529 AAATCTCCACACATAGTCATCAGGTCTTACCCGGACA 1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA * 103376566 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA 103376601 ATATATTTCC Statistics Matches: 67, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 36 1 0.01 37 66 0.99 ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22 Consensus pattern (37 bp): AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA Found at i:103376872 original size:48 final size:48 Alignment explanation
Indices: 103376746--103376930 Score: 291 Period size: 48 Copynumber: 3.8 Consensus size: 48 103376736 GCACATCGCC * 103376746 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA 1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A * * * 103376796 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA 1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA * 103376844 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA 1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA 103376892 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA 1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA 103376931 TGCATGTTCA Statistics Matches: 125, Mismatches: 8, Indels: 6 0.90 0.06 0.04 Matches are distributed among these distances: 48 82 0.66 49 2 0.02 50 41 0.33 ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36 Consensus pattern (48 bp): TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA Found at i:103376935 original size:98 final size:97 Alignment explanation
Indices: 103376746--103376929 Score: 300 Period size: 98 Copynumber: 1.9 Consensus size: 97 103376736 GCACATCGCC * 103376746 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT 1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT 103376811 GACCATTCAGCTTTACCACATATGCATATCTCA 65 GACCATTCAGCTTTACCACATATGCATATCTCA * * 103376844 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT- 1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG * 103376907 AGCCATTCGGCTTTACCACATAT 66 A-CCATTCAGCTTTACCACATAT 103376930 ATGCATGTTC Statistics Matches: 81, Mismatches: 4, Indels: 4 0.91 0.04 0.04 Matches are distributed among these distances: 95 1 0.01 96 35 0.43 98 45 0.56 ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36 Consensus pattern (97 bp): TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG ACCATTCAGCTTTACCACATATGCATATCTCA Found at i:103376979 original size:47 final size:47 Alignment explanation
Indices: 103376900--103377093 Score: 289 Period size: 47 Copynumber: 4.1 Consensus size: 47 103376890 CATACATATT * * * * 103376900 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA * * * 103376947 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA * 103376994 TCACATTGGCCATTCGGCCCTATCACATATATGCATGTTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA * ** 103377041 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 103377088 TCACAT 1 TCACAT 103377094 AAAATCCTAA Statistics Matches: 132, Mismatches: 15, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 47 132 1.00 ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32 Consensus pattern (47 bp): TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA Found at i:103377094 original size:25 final size:25 Alignment explanation
Indices: 103377015--103377094 Score: 69 Period size: 25 Copynumber: 3.3 Consensus size: 25 103377005 ATTCGGCCCT ** 103377015 ATCACATATATGCATGTTCACATTC 1 ATCACATATATGCACATTCACATTC * * * 103377040 ATCACAT-T-GGC-CATTCGGCCTT- 1 ATCACATATATGCACATTC-ACATTC * 103377062 ATCTCATATATGCACATTCACATTC 1 ATCACATATATGCACATTCACATTC 103377087 ATCACATA 1 ATCACATA 103377095 AAATCCTAAA Statistics Matches: 40, Mismatches: 10, Indels: 10 0.67 0.17 0.17 Matches are distributed among these distances: 22 9 0.22 23 6 0.15 24 6 0.15 25 19 0.47 ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34 Consensus pattern (25 bp): ATCACATATATGCACATTCACATTC Found at i:103395803 original size:16 final size:16 Alignment explanation
Indices: 103395782--103395813 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 103395772 CTCCACTGGG 103395782 AAAGGTTCTCCGCGCC 1 AAAGGTTCTCCGCGCC 103395798 AAAGGTTCTCCGCGCC 1 AAAGGTTCTCCGCGCC 103395814 TGCCATGTCC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.19, C:0.38, G:0.25, T:0.19 Consensus pattern (16 bp): AAAGGTTCTCCGCGCC Found at i:103406796 original size:48 final size:48 Alignment explanation
Indices: 103406732--103406857 Score: 189 Period size: 48 Copynumber: 2.6 Consensus size: 48 103406722 CAAGGTAAAT * * * 103406732 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG * * 103406780 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG * * 103406828 AGATGTATATTTGGTAAAGCCGAATGGCTA 1 ATATGTATATGTGGTAAAGCCGAATGGCTA 103406858 TGTGCAATAC Statistics Matches: 70, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 48 70 1.00 ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30 Consensus pattern (48 bp): ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG Found at i:103407065 original size:37 final size:37 Alignment explanation
Indices: 103407015--103407095 Score: 135 Period size: 37 Copynumber: 2.2 Consensus size: 37 103407005 GGAAATATAT * * 103407015 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG 1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA * 103407052 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA 1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA 103407089 TCCGGGT 1 TCCGGGT 103407096 TAAAACCCCG Statistics Matches: 41, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 37 41 1.00 ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA Found at i:103409785 original size:43 final size:43 Alignment explanation
Indices: 103409732--103409823 Score: 175 Period size: 43 Copynumber: 2.1 Consensus size: 43 103409722 GTTCGCGATT * 103409732 TATCGGACCGTACGAGATCATTGAAAGAGTTGGACCATTAGCC 1 TATCGCACCGTACGAGATCATTGAAAGAGTTGGACCATTAGCC 103409775 TATCGCACCGTACGAGATCATTGAAAGAGTTGGACCATTAGCC 1 TATCGCACCGTACGAGATCATTGAAAGAGTTGGACCATTAGCC 103409818 TATCGC 1 TATCGC 103409824 TTGGCATTGC Statistics Matches: 48, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 43 48 1.00 ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24 Consensus pattern (43 bp): TATCGCACCGTACGAGATCATTGAAAGAGTTGGACCATTAGCC Found at i:103410606 original size:24 final size:27 Alignment explanation
Indices: 103410557--103410606 Score: 70 Period size: 27 Copynumber: 2.0 Consensus size: 27 103410547 CAGATATTGG * 103410557 ATGTGAACAGGTTAAGGGGGATAAATA 1 ATGTGAACAGGTTAAGGGGCATAAATA 103410584 ATGTGAA-AGGTT-AGGGGCA-AAAT 1 ATGTGAACAGGTTAAGGGGCATAAAT 103410607 GGTCATTTTG Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 24 4 0.18 25 6 0.27 26 5 0.23 27 7 0.32 ACGTcount: A:0.40, C:0.04, G:0.34, T:0.22 Consensus pattern (27 bp): ATGTGAACAGGTTAAGGGGCATAAATA Found at i:103414959 original size:19 final size:19 Alignment explanation
Indices: 103414925--103414963 Score: 53 Period size: 20 Copynumber: 2.1 Consensus size: 19 103414915 GATTTCGTAC * 103414925 TTTGGCCCATTTTCTCCGTT 1 TTTGGCCCAGTTTCT-CGTT 103414945 TTTGGCCC-GTTTCTCGTT 1 TTTGGCCCAGTTTCTCGTT 103414963 T 1 T 103414964 CTTTCGCTCT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 18 5 0.28 19 5 0.28 20 8 0.44 ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51 Consensus pattern (19 bp): TTTGGCCCAGTTTCTCGTT Found at i:103427263 original size:48 final size:48 Alignment explanation
Indices: 103427192--103427387 Score: 365 Period size: 48 Copynumber: 4.1 Consensus size: 48 103427182 CAAGATAAAT 103427192 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG * 103427240 AGATATGTATATGTGGTAAAGCCGACTGGCTAGTGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 103427288 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG * * 103427336 AGATATGTATATGTGGTAAAGCCCAATGGCTAGTGTGAAATATGTAGG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 103427384 AGAT 1 AGAT 103427388 GTGAGTATAT Statistics Matches: 144, Mismatches: 4, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 48 144 1.00 ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31 Consensus pattern (48 bp): AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG Found at i:103427578 original size:37 final size:37 Alignment explanation
Indices: 103427528--103427667 Score: 235 Period size: 37 Copynumber: 3.8 Consensus size: 37 103427518 GGAAATATAT 103427528 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 103427565 TCCGGATAAGACCCGATGACTACGTGTGGAGATTATA 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 103427602 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * 103427639 TCCGGGTAAGACCCGATAACTACGTGTGG 1 TCCGGGTAAGACCCGATGACTACGTGTGG 103427668 GGACTATTCG Statistics Matches: 95, Mismatches: 8, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 37 95 1.00 ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:103429214 original size:40 final size:40 Alignment explanation
Indices: 103428959--103429205 Score: 406 Period size: 40 Copynumber: 6.2 Consensus size: 40 103428949 TTATATAGCT * * * 103428959 GGGCTAAG-TCTCGAAGAGCATTCGTGCTGGTGTTATATCC 1 GGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTATCC * 103428999 GGGCTAAGTTCAGAAGAGCATTCGTGCTAGTGATGTATCC 1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC 103429039 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC 1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC * * 103429079 GGGCTAAGTTCCGAAGAGTATTCATGCTAGTGATGTATCC 1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC 103429119 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC 1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC * * 103429159 AGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC 1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC 103429199 GGGCTAA 1 GGGCTAA 103429206 ACCTCGAAGG Statistics Matches: 194, Mismatches: 12, Indels: 2 0.93 0.06 0.01 Matches are distributed among these distances: 40 192 0.99 41 2 0.01 ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28 Consensus pattern (40 bp): GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC Found at i:103429274 original size:28 final size:27 Alignment explanation
Indices: 103429237--103429390 Score: 96 Period size: 28 Copynumber: 5.4 Consensus size: 27 103429227 GAGTTATGAG * * 103429237 GCACTGTGTGTGCAAGTTCTTCAACTGA 1 GCACTATGTGTGCGAGTTCTT-AACTGA * * * ** 103429265 GCACTATGTGTGCCAGCTCAGTAGTTGA 1 GCACTATGTGTGCGAGTTC-TTAACTGA * 103429293 GGCACTATGTGTGCGAGTTCTTCAA-TCAA 1 -GCACTATGTGTGCGAGTTCTT-AACT-GA * ** * 103429322 GCACTATGTGTGTGAGATTGGTAATTGA 1 GCACTATGTGTGCGAG-TTCTTAACTGA 103429350 GGCACTATGTGTGCGAGTTCTTTAATCT-A 1 -GCACTATGTGTGCGAGTTC-TTAA-CTGA * 103429379 GCGCTATGTGTG 1 GCACTATGTGTG 103429391 TGAAATCAGT Statistics Matches: 97, Mismatches: 20, Indels: 18 0.72 0.15 0.13 Matches are distributed among these distances: 28 53 0.55 29 43 0.44 30 1 0.01 ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33 Consensus pattern (27 bp): GCACTATGTGTGCGAGTTCTTAACTGA Found at i:103429375 original size:29 final size:29 Alignment explanation
Indices: 103429233--103429375 Score: 121 Period size: 29 Copynumber: 5.0 Consensus size: 29 103429223 GCTGGAGTTA * * * * 103429233 TGAGGCACTGTGTGTGCAAGTTCTTCAAC 1 TGAGGCACTATGTGTGCGAGTTCTTTAAT * * ** * 103429262 TGA-GCACTATGTGTGCCAGCTCAGTAGT 1 TGAGGCACTATGTGTGCGAGTTCTTTAAT * 103429290 TGAGGCACTATGTGTGCGAGTTCTTCAA- 1 TGAGGCACTATGTGTGCGAGTTCTTTAAT * * * ** 103429318 TCAAGCACTATGTGTGTGAGATT-GGTAAT 1 TGAGGCACTATGTGTGCGAG-TTCTTTAAT 103429347 TGAGGCACTATGTGTGCGAGTTCTTTAAT 1 TGAGGCACTATGTGTGCGAGTTCTTTAAT 103429376 CTAGCGCTAT Statistics Matches: 85, Mismatches: 25, Indels: 8 0.72 0.21 0.07 Matches are distributed among these distances: 28 41 0.48 29 44 0.52 ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33 Consensus pattern (29 bp): TGAGGCACTATGTGTGCGAGTTCTTTAAT Found at i:103429391 original size:57 final size:57 Alignment explanation
Indices: 103429233--103429400 Score: 212 Period size: 57 Copynumber: 2.9 Consensus size: 57 103429223 GCTGGAGTTA * * ** * * 103429233 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGCTCAGTAGT 1 TGAGGCACTATGTGTGCGAGTTCTTCAATCT-AGCACTATGTGTGTGAGATCAGTAAT * ** 103429290 TGAGGCACTATGTGTGCGAGTTCTTCAATCAAGCACTATGTGTGTGAGATTGGTAAT 1 TGAGGCACTATGTGTGCGAGTTCTTCAATCTAGCACTATGTGTGTGAGATCAGTAAT * * * 103429347 TGAGGCACTATGTGTGCGAGTTCTTTAATCTAGCGCTATGTGTGTGAAATCAGT 1 TGAGGCACTATGTGTGCGAGTTCTTCAATCTAGCACTATGTGTGTGAGATCAGT 103429401 CAGTGGGCAC Statistics Matches: 95, Mismatches: 15, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 57 94 0.99 58 1 0.01 ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33 Consensus pattern (57 bp): TGAGGCACTATGTGTGCGAGTTCTTCAATCTAGCACTATGTGTGTGAGATCAGTAAT Found at i:103431450 original size:48 final size:48 Alignment explanation
Indices: 103431379--103431574 Score: 365 Period size: 48 Copynumber: 4.1 Consensus size: 48 103431369 CAAGTTAAAT * 103431379 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 103431427 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 103431475 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG * * 103431523 AGATATGTCTATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG 1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG 103431571 AGAT 1 AGAT 103431575 GTGTGTATAT Statistics Matches: 145, Mismatches: 3, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 48 145 1.00 ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31 Consensus pattern (48 bp): AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG Found at i:103431769 original size:37 final size:37 Alignment explanation
Indices: 103431715--103431854 Score: 226 Period size: 37 Copynumber: 3.8 Consensus size: 37 103431705 GGAAATATAT * 103431715 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 103431752 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 103431789 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * * 103431826 TCTGGGTAAGACCCGATAACTACTTGTGG 1 TCCGGGTAAGACCCGATGACTACGTGTGG 103431855 GGACTATTCG Statistics Matches: 98, Mismatches: 5, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 37 98 1.00 ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:103433146 original size:20 final size:21 Alignment explanation
Indices: 103433121--103433162 Score: 59 Period size: 20 Copynumber: 2.0 Consensus size: 21 103433111 CTAAATACAA 103433121 TTATATGTAATT-ATACGTGT 1 TTATATGTAATTGATACGTGT * * 103433141 TTATATGTGATTGATATGTGT 1 TTATATGTAATTGATACGTGT 103433162 T 1 T 103433163 AGAATATTGA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 20 11 0.58 21 8 0.42 ACGTcount: A:0.26, C:0.02, G:0.19, T:0.52 Consensus pattern (21 bp): TTATATGTAATTGATACGTGT Found at i:103434842 original size:75 final size:75 Alignment explanation
Indices: 103434719--103434868 Score: 246 Period size: 75 Copynumber: 2.0 Consensus size: 75 103434709 ATTCAAGTTT * * * * 103434719 ATATTTTTTACTAGATTTATGAGGAACTAATCCTCCTGTGCGGGATTAACGAGTGGAGGTATGAA 1 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA 103434784 TAATTAATTG 66 TAATTAATTG * * 103434794 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAAGGAGTGGATATATGAA 1 ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA 103434859 TAATTAATTG 66 TAATTAATTG 103434869 TTTTATAGGG Statistics Matches: 69, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 75 69 1.00 ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36 Consensus pattern (75 bp): ATATTTTTTACTAGATCTATAAGGAACTAATCCTCCTGTGAGGGATTAACGAGTGGAGATATGAA TAATTAATTG Found at i:103446330 original size:40 final size:40 Alignment explanation
Indices: 103446286--103446511 Score: 264 Period size: 40 Copynumber: 5.7 Consensus size: 40 103446276 GCTACTCGTT * * * 103446286 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA * 103446326 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA * 103446366 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA * * * 103446406 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCACA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA * * * 103446446 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA * 103446487 CAAA-GCCTTCGGAACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 103446512 CATCATTCGA Statistics Matches: 168, Mismatches: 14, Indels: 8 0.88 0.07 0.04 Matches are distributed among these distances: 39 3 0.02 40 154 0.92 41 11 0.07 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA Found at i:103453736 original size:21 final size:19 Alignment explanation
Indices: 103453707--103453745 Score: 51 Period size: 21 Copynumber: 1.9 Consensus size: 19 103453697 TTCTAACCTA * 103453707 TAATTATTTTCATACAATTTT 1 TAATGATTTTC-TA-AATTTT 103453728 TAATGATTTTCTAAATTT 1 TAATGATTTTCTAAATTT 103453746 AAGACAAGGG Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 19 5 0.29 20 2 0.12 21 10 0.59 ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56 Consensus pattern (19 bp): TAATGATTTTCTAAATTTT Found at i:103454397 original size:48 final size:48 Alignment explanation
Indices: 103454274--103454792 Score: 337 Period size: 48 Copynumber: 10.8 Consensus size: 48 103454264 AAAAGGGTAA * ** * * 103454274 AATGTCGATGCCATGTTCTGGACATGGTCTTACACTGGC-TCTCATACATC 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATAT-ATA-A-C * 103454324 AATGTCGATGCCATG-TCCTAGACATGGTCTTACACTGACATATATAAC 1 AATGCCGATGCCATGTTCC-AGACATGGTCTTACACTGACATATATAAC * * ** 103454372 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGATCACATAT-TG 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACT-GA-CATATATAAC ** * * * * 103454421 AA-GTTGATGCCATGTCCCGGACATGGTTTTACACT-AGC-TCTCATACATC 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGA-CATAT-ATA-A-C * * * 103454470 AGTGTCGATGCCATG-TCCTAGACATGGTCTTACACTGACACATATAAC 1 AATGCCGATGCCATGTTCC-AGACATGGTCTTACACTGACATATATAAC * * * * ** 103454518 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGC-TCTCATATT 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATAT-ATAAC * * * * * * ** * 103454566 GAGGCCGATGCCATGTCCCAGAAATAGTCTTACATTG-GTTCACATAAC 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACAT-ATATAAC * * * 103454614 AATGCCGATGCCATGTTCCAAACATGATCTTACACTGAC-TCTCATAAACC 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATAT-AT-AA-C ** * * * * 103454664 GGTACTGATGCCATGTCCCAGACATGGTCTTACACTGACACATAT--C 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATATATAAC * * * * * 103454710 GAGGCCGATGCCATGTCCCAGACATGGTCTTACATTGACACATAT--C 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATATATAAC * * * 103454756 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTG 1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTG 103454793 GCTCTTATAT Statistics Matches: 374, Mismatches: 73, Indels: 48 0.76 0.15 0.10 Matches are distributed among these distances: 45 1 0.00 46 82 0.22 47 1 0.00 48 159 0.43 49 19 0.05 50 107 0.29 51 5 0.01 ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28 Consensus pattern (48 bp): AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGACATATATAAC Found at i:103454512 original size:96 final size:95 Alignment explanation
Indices: 103454279--103454793 Score: 463 Period size: 96 Copynumber: 5.3 Consensus size: 95 103454269 GGTAAAATGT * ** * * * * 103454279 CGATGCCATGTTCTGGACATGGTCTTACACTGGCTCTCATACATCAATGTCGATGCCATGTCCTA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGG-ACACATATA-CAATGTCGATGCCATGTCCCA * * 103454344 GACATGGTCTTACACTGACATAT-ATAA-CAATGC 64 GACATGGTCTTACACTG-C-TCTCATAATC-AGGC * * * ** * * 103454377 CGATGCCATGTTCCAAACATGGTCTTACACTAGATCACATATTGAA-GTTGATGCCATGTCCCGG 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGA-CACATATACAATGTCGATGCCATGTCCCAG * * 103454441 ACATGGTTTTACACTAGCTCTCATACATCAGTGT 65 ACATGGTCTTACACT-GCTCTCATA-ATCAG-GC * * * 103454475 CGATGCCATGTCCTAGACATGGTCTTACACT-GACACATATAACAATGTCGATGCCATGTTCCAA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGACACATAT-ACAATGTCGATGCCATGTCCCAG * * 103454539 ACATGGTCTTACACTGGCTCTCATATTGAGGC 65 ACATGGTCTTACACT-GCTCTCATAATCAGGC * * * * * * * 103454571 CGATGCCATGTCCCAGAAATAGTCTTACATTGGTTCACATA-ACAATGCCGATGCCATGTTCCAA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGG-ACACATATACAATGTCGATGCCATGTCCCAG * * * 103454635 ACATGATCTTACACTGACTCTCATAAACCGGTAC 65 ACATGGTCTTACACTG-CTCTCATAATCAGG--C * * * * 103454669 TGATGCCATGTCCCAGACATGGTCTTACACT-GACACATAT-CGAGGCCGATGCCATGTCCCAGA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGACACATATACAATGTCGATGCCATGTCCCAGA * * * 103454732 CATGGTCTTACATTG-ACACAT-ATCGAGGC 66 CATGGTCTTACACTGCTCTCATAATC-AGGC 103454761 CGATGCCATGTCCCAGACATGGTCTTACACTGG 1 CGATGCCATGTCCCAGACATGGTCTTACACTGG 103454794 CTCTTATATC Statistics Matches: 344, Mismatches: 57, Indels: 37 0.79 0.13 0.08 Matches are distributed among these distances: 92 31 0.09 93 3 0.01 94 6 0.02 95 3 0.01 96 152 0.44 97 14 0.04 98 135 0.39 ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28 Consensus pattern (95 bp): CGATGCCATGTCCCAGACATGGTCTTACACTGGACACATATACAATGTCGATGCCATGTCCCAGA CATGGTCTTACACTGCTCTCATAATCAGGC Found at i:103454544 original size:146 final size:144 Alignment explanation
Indices: 103454279--103454792 Score: 576 Period size: 146 Copynumber: 3.6 Consensus size: 144 103454269 GGTAAAATGT * ** * * 103454279 CGATGCCATGTTCTGGACATGGTCTTACACTGGCTCTCATACATCAATGTCGATGCCATGTCCTA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA-ATCAATGCCGATGCCATGTCCTA * * 103454344 GACATGGTCTTACACTGACATATATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTA 65 GACATGGTCTTACACTGACACATATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACT- * * 103454409 GATCACATATTGAAGT 129 GATCACATATTGAGGC * * * * * * * 103454425 TGATGCCATGTCCCGGACATGGTTTTACACTAGCTCTCATACATCAGTGTCGATGCCATGTCCTA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA-ATCAATGCCGATGCCATGTCCTA 103454490 GACATGGTCTTACACTGACACATATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTG 65 GACATGGTCTTACACTGACACATATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACT- * * 103454555 GCTCTCATATTGAGGC 129 GATCACATATTGAGGC * * * * 103454571 CGATGCCATGTCCCAGAAATAGTCTTACATTGGTTCACATAA-CAATGCCGATGCCATGTTCC-A 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATCAATGCCGATGCCATG-TCCTA * * * ** * * 103454634 AACATGATCTTACACTGACTC-TCATAA-ACCGGTACTGATGCCATGTCCCAGACATGGTCTTAC 65 GACATGGTCTTACACTGACACAT-ATAACA-ATGT-C-GATGCCATGTTCCAAACATGGTCTTAC * 103454697 ACTGA-CACATATCGAGGC 126 ACTGATCACATATTGAGGC * * * * * 103454715 CGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACAT-ATCGAGGCCGATGCCATGTCCCAG 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATCAATGCCGATGCCATGTCCTAG 103454777 ACATGGTCTTACACTG 66 ACATGGTCTTACACTG 103454793 GCTCTTATAT Statistics Matches: 319, Mismatches: 42, Indels: 18 0.84 0.11 0.05 Matches are distributed among these distances: 141 4 0.01 142 35 0.11 143 4 0.01 144 77 0.24 145 6 0.02 146 193 0.61 ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28 Consensus pattern (144 bp): CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATCAATGCCGATGCCATGTCCTAG ACATGGTCTTACACTGACACATATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTGA TCACATATTGAGGC Found at i:103458209 original size:29 final size:29 Alignment explanation
Indices: 103458067--103458192 Score: 166 Period size: 29 Copynumber: 4.3 Consensus size: 29 103458057 GACAAGATTG * * * * 103458067 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTGAAAA-TATATA * 103458097 GCACTAAGTGTGCGAGTTTG--ATTATATA 1 GCACTAAGTGTGCGAG-TTGAAAATATATA 103458125 GCACTAAGTGTGCGAGTTGAAAATATATA 1 GCACTAAGTGTGCGAGTTGAAAATATATA * 103458154 GCACTAAGTGTGCGAGCTGAAAATATATA 1 GCACTAAGTGTGCGAGTTGAAAATATATA 103458183 GCACTAAGTG 1 GCACTAAGTG 103458193 AGCGGATTCA Statistics Matches: 86, Mismatches: 7, Indels: 7 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.03 28 20 0.23 29 46 0.53 30 15 0.17 31 2 0.02 ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29 Consensus pattern (29 bp): GCACTAAGTGTGCGAGTTGAAAATATATA Found at i:103461739 original size:70 final size:71 Alignment explanation
Indices: 103461656--103461818 Score: 310 Period size: 70 Copynumber: 2.3 Consensus size: 71 103461646 CGATTTGTCT 103461656 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 103461720 CTTTCA 66 CTTTCA * 103461726 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 103461791 CTTTCA 66 CTTTCA 103461797 CGTAGCTCTCTTGTCTACATGG 1 CGTAGCTCTCTTGTCTACATGG 103461819 GATACATCTC Statistics Matches: 91, Mismatches: 1, Indels: 1 0.98 0.01 0.01 Matches are distributed among these distances: 70 51 0.56 71 40 0.44 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34 Consensus pattern (71 bp): CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT CTTTCA Found at i:103461856 original size:71 final size:70 Alignment explanation
Indices: 103461656--103461852 Score: 249 Period size: 70 Copynumber: 2.8 Consensus size: 70 103461646 CGATTTGTCT * * * * 103461656 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT 103461720 CTTTCA 65 CTTTCA * * * * 103461726 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT 103461791 CTTTCA 65 CTTTCA * * 103461797 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC 1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC 103461853 TACAGGGTGT Statistics Matches: 118, Mismatches: 7, Indels: 6 0.90 0.05 0.05 Matches are distributed among these distances: 68 22 0.19 69 1 0.01 70 52 0.44 71 43 0.36 ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33 Consensus pattern (70 bp): CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC TTTCA Found at i:103468758 original size:70 final size:71 Alignment explanation
Indices: 103468675--103468837 Score: 310 Period size: 70 Copynumber: 2.3 Consensus size: 71 103468665 CGATTTGTCT 103468675 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 103468739 CTTTCA 66 CTTTCA * 103468745 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 103468810 CTTTCA 66 CTTTCA 103468816 CGTAGCTCTCTTGTCTACATGG 1 CGTAGCTCTCTTGTCTACATGG 103468838 GATACATCTC Statistics Matches: 91, Mismatches: 1, Indels: 1 0.98 0.01 0.01 Matches are distributed among these distances: 70 51 0.56 71 40 0.44 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34 Consensus pattern (71 bp): CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT CTTTCA Found at i:103468875 original size:71 final size:70 Alignment explanation
Indices: 103468675--103468871 Score: 249 Period size: 70 Copynumber: 2.8 Consensus size: 70 103468665 CGATTTGTCT * * * * 103468675 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT 103468739 CTTTCA 65 CTTTCA * * * * 103468745 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT 103468810 CTTTCA 65 CTTTCA * * 103468816 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC 1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC 103468872 TACAGGGTGT Statistics Matches: 118, Mismatches: 7, Indels: 6 0.90 0.05 0.05 Matches are distributed among these distances: 68 22 0.19 69 1 0.01 70 52 0.44 71 43 0.36 ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33 Consensus pattern (70 bp): CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC TTTCA Found at i:103472928 original size:29 final size:29 Alignment explanation
Indices: 103472895--103473054 Score: 180 Period size: 29 Copynumber: 5.5 Consensus size: 29 103472885 GTGACGAGAT 103472895 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 103472924 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 103472953 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA * ** * *** 103472982 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA 1 TGGCACTAAGTGTGC-ATGCTGGAAATATA * ** * * 103473011 TGGCACTATGTGTGCGGGCT-TAAATCACA 1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA 103473040 TGGCACTAAGTGTGC 1 TGGCACTAAGTGTGC 103473055 GAAATCGAGT Statistics Matches: 111, Mismatches: 17, Indels: 6 0.83 0.13 0.04 Matches are distributed among these distances: 28 2 0.02 29 108 0.97 30 1 0.01 ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCATGCTGGAAATATA Found at i:103480912 original size:29 final size:29 Alignment explanation
Indices: 103480879--103481038 Score: 180 Period size: 29 Copynumber: 5.5 Consensus size: 29 103480869 GTGACGAGAT 103480879 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 103480908 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 103480937 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA * ** * *** 103480966 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA 1 TGGCACTAAGTGTGC-ATGCTGGAAATATA * ** * * 103480995 TGGCACTATGTGTGCGGGCT-TAAATCACA 1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA 103481024 TGGCACTAAGTGTGC 1 TGGCACTAAGTGTGC 103481039 GAAATCGAGT Statistics Matches: 111, Mismatches: 17, Indels: 6 0.83 0.13 0.04 Matches are distributed among these distances: 28 2 0.02 29 108 0.97 30 1 0.01 ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCATGCTGGAAATATA Found at i:103487033 original size:29 final size:29 Alignment explanation
Indices: 103486892--103487021 Score: 165 Period size: 29 Copynumber: 4.5 Consensus size: 29 103486882 GACAAGATTG * * * * * 103486892 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGCTGAAAA-TATATA * * 103486922 GCACTAAGTGTGCGAGTTTG--ATTATATA 1 GCACTAAGTGTGCGAG-CTGAAAATATATA 103486950 GCACTAAGTGTGCGAGCTGAAAATATATA 1 GCACTAAGTGTGCGAGCTGAAAATATATA 103486979 GCACTAAGTGTGCGAGCTGAAAATATATA 1 GCACTAAGTGTGCGAGCTGAAAATATATA 103487008 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 103487022 GATTCACTAT Statistics Matches: 90, Mismatches: 7, Indels: 7 0.87 0.07 0.07 Matches are distributed among these distances: 27 2 0.02 28 20 0.22 29 51 0.57 30 15 0.17 31 2 0.02 ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28 Consensus pattern (29 bp): GCACTAAGTGTGCGAGCTGAAAATATATA Found at i:103488574 original size:49 final size:49 Alignment explanation
Indices: 103488514--103488642 Score: 154 Period size: 49 Copynumber: 2.6 Consensus size: 49 103488504 ATCAAAGTTG * * * 103488514 ATGCCATGTCCCAGACATGTCTTACACTGACTTTGC-TATATCGAG-GCCA 1 ATGCCATGTCCCAAACAGGTCTTACACTGACTCT-CATATATCG-GTGCCA * * * * * 103488563 ATGCCATGTCCCAAATAGGTGTTACACTGACTCTCATCTATCGGTGTCG 1 ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGGTGCCA 103488612 ATGCCATGTCCCAAACAGGTCTTACACTGAC 1 ATGCCATGTCCCAAACAGGTCTTACACTGAC 103488643 ACACAATAAG Statistics Matches: 68, Mismatches: 10, Indels: 4 0.83 0.12 0.05 Matches are distributed among these distances: 48 2 0.03 49 66 0.97 ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28 Consensus pattern (49 bp): ATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGGTGCCA Found at i:103488763 original size:46 final size:46 Alignment explanation
Indices: 103488709--103488823 Score: 230 Period size: 46 Copynumber: 2.5 Consensus size: 46 103488699 AGGCCGATGC 103488709 ATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGACCGACGT 1 ATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGACCGACGT 103488755 ATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGACCGACGT 1 ATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGACCGACGT 103488801 ATGTCCCAGACATGTCTTACACT 1 ATGTCCCAGACATGTCTTACACT 103488824 AGCACACATA Statistics Matches: 69, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 46 69 1.00 ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29 Consensus pattern (46 bp): ATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGACCGACGT Found at i:103491266 original size:20 final size:22 Alignment explanation
Indices: 103491241--103491280 Score: 66 Period size: 22 Copynumber: 1.9 Consensus size: 22 103491231 CATCTTTTAC 103491241 TTATA-TAAAA-AATAAAAAAT 1 TTATATTAAAATAATAAAAAAT 103491261 TTATATTAAAATAATAAAAA 1 TTATATTAAAATAATAAAAA 103491281 TAACATGTCA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 20 5 0.28 21 5 0.28 22 8 0.44 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33 Consensus pattern (22 bp): TTATATTAAAATAATAAAAAAT Found at i:103491309 original size:16 final size:16 Alignment explanation
Indices: 103491290--103491357 Score: 52 Period size: 16 Copynumber: 4.2 Consensus size: 16 103491280 ATAACATGTC 103491290 AAATAAATTACATAAA 1 AAATAAATTACATAAA 103491306 AAATAAATCTA-ATAAA 1 AAATAAAT-TACATAAA * * * 103491322 CCTAAA-ACA-CACATAAC 1 ---AAATAAATTACATAAA 103491339 AAATAAATTACATAAA 1 AAATAAATTACATAAA 103491355 AAA 1 AAA 103491358 AATATTCTTT Statistics Matches: 39, Mismatches: 6, Indels: 14 0.66 0.10 0.24 Matches are distributed among these distances: 14 3 0.08 15 2 0.05 16 23 0.59 17 6 0.15 18 2 0.05 19 3 0.08 ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21 Consensus pattern (16 bp): AAATAAATTACATAAA Found at i:103491660 original size:29 final size:29 Alignment explanation
Indices: 103491627--103491682 Score: 87 Period size: 29 Copynumber: 1.9 Consensus size: 29 103491617 ACCTCTTAAT 103491627 TAATTTTTT-TCAAACCCTAAACACAACCC 1 TAATTTTTTCTCAAACCCT-AACACAACCC * 103491656 TAATTTTTTCTCAAATCCTAACACAAC 1 TAATTTTTTCTCAAACCCTAACACAAC 103491683 TTATTCTCCT Statistics Matches: 25, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 29 17 0.68 30 8 0.32 ACGTcount: A:0.38, C:0.29, G:0.00, T:0.34 Consensus pattern (29 bp): TAATTTTTTCTCAAACCCTAACACAACCC Found at i:103493646 original size:29 final size:31 Alignment explanation
Indices: 103493603--103493666 Score: 96 Period size: 30 Copynumber: 2.1 Consensus size: 31 103493593 TTAATAAATA * * 103493603 AAAAATTATATTTTAATT-TTTTAAAATTAT 1 AAAAATTATAATTTAATTCTTTAAAAATTAT 103493633 AAAAATT-TAATTTAATTCTTTAAAAATTAT 1 AAAAATTATAATTTAATTCTTTAAAAATTAT 103493663 AAAA 1 AAAA 103493667 TATAGATTAT Statistics Matches: 31, Mismatches: 2, Indels: 2 0.89 0.06 0.06 Matches are distributed among these distances: 29 9 0.29 30 22 0.71 ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47 Consensus pattern (31 bp): AAAAATTATAATTTAATTCTTTAAAAATTAT Done.