Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 361 of 444
Found at i:105027758 original size:45 final size:45
Alignment explanation
Indices: 105027704--105027799 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
105027694 TTCTCTGTCG
* *
105027704 TTTCTTCCTCTTCCAAACCCTTGCTACTGAAATTCTTTTCTTTTC
1 TTTCTTCCTCTTCCAAACCCCTGCTACCGAAATTCTTTTCTTTTC
105027749 TTTCTTCCTCTTCCAAACCCCTGCTACCGAAATTCTTTTCTTTTC
1 TTTCTTCCTCTTCCAAACCCCTGCTACCGAAATTCTTTTCTTTTC
105027794 TTTCTT
1 TTTCTT
105027800 TTTCCTTCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.15, C:0.32, G:0.04, T:0.49
Consensus pattern (45 bp):
TTTCTTCCTCTTCCAAACCCCTGCTACCGAAATTCTTTTCTTTTC
Found at i:105027823 original size:16 final size:16
Alignment explanation
Indices: 105027784--105027829 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
105027774 ACCGAAATTC
105027784 TTTTCTT-TTCTTTCT
1 TTTTCTTCTTCTTTCT
105027799 TTTTCCTTCTTC-TTCGT
1 TTTT-CTTCTTCTTTC-T
*
105027816 TTTTCTTCTCCTTT
1 TTTTCTTCTTCTTT
105027830 GATTTTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 12 0.46
17 10 0.38
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (16 bp):
TTTTCTTCTTCTTTCT
Found at i:105029659 original size:20 final size:20
Alignment explanation
Indices: 105029601--105029661 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
105029591 GCTTGTATGA
* *
105029601 GATTGCACTTCGGTGCCTTT
1 GATTGCACTTTGGTGCCTCT
*
105029621 GATTGCACATTT-GTTCCTCT
1 GATTGCAC-TTTGGTGCCTCT
105029641 -ATCTGCACTTTGGTGCCTCT
1 GAT-TGCACTTTGGTGCCTCT
105029661 G
1 G
105029662 TTACGCATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 5 0.15
20 26 0.79
21 2 0.06
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.41
Consensus pattern (20 bp):
GATTGCACTTTGGTGCCTCT
Found at i:105037147 original size:26 final size:26
Alignment explanation
Indices: 105037118--105037225 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
105037108 TGGTACAAAT
*
105037118 TGATAATGGGATAGGTAATTGTTCCA
1 TGATAATGGGATAGGTAAATGTTCCA
*
105037144 TGATAAT-GGATTAGGTAAATATTCCA
1 TGATAATGGGA-TAGGTAAATGTTCCA
*
105037170 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGATAGGTAAATGTTCCA
**
105037196 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGATAGGTAAATGTTCCA
105037222 TGAT
1 TGAT
105037226 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 3 0.04
26 70 0.93
27 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGATAGGTAAATGTTCCA
Found at i:105037185 original size:52 final size:52
Alignment explanation
Indices: 105037118--105037225 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
105037108 TGGTACAAAT
*
105037118 TGATAATGGGATAGGTAATTGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGATAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
105037170 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGATAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
105037222 TGAT
1 TGAT
105037226 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGATAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:105038416 original size:8 final size:8
Alignment explanation
Indices: 105038403--105038432 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
105038393 AGATTGGCAC
105038403 AAGCCGAA
1 AAGCCGAA
105038411 AAGCCGAA
1 AAGCCGAA
*
105038419 ATGCCGAA
1 AAGCCGAA
105038427 AAGCCG
1 AAGCCG
105038433 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:105038901 original size:54 final size:54
Alignment explanation
Indices: 105038819--105038962 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
105038809 TGGAGGAAGC
105038819 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
105038873 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
105038927 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
105038963 ACTTCGTCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:105038973 original size:27 final size:27
Alignment explanation
Indices: 105038822--105038980 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
105038812 AGGAAGCGTC
*
105038822 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
105038849 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
105038876 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
105038903 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
105038930 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
105038957 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
105038981 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:105038974 original size:81 final size:80
Alignment explanation
Indices: 105038822--105038980 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
105038812 AGGAAGCGTC
*
105038822 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
105038887 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
105038903 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
105038966 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
105038981 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:105041443 original size:9 final size:9
Alignment explanation
Indices: 105041431--105041456 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
105041421 CTTGTGAGAT
105041431 TTTTGAGCC
1 TTTTGAGCC
105041440 TTTTGAGCC
1 TTTTGAGCC
105041449 TTTTGAGC
1 TTTTGAGC
105041457 ATATTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (9 bp):
TTTTGAGCC
Found at i:105043580 original size:79 final size:80
Alignment explanation
Indices: 105043437--105043644 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
105043427 ACCTTTGGAG
* * ** * * * *
105043437 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
105043501 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
105043516 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
105043578 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
105043595 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
105043645 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:105043589 original size:40 final size:40
Alignment explanation
Indices: 105043537--105043644 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
105043527 TATCACGATT
** *
105043537 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
105043577 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
105043617 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
105043645 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:105054071 original size:18 final size:18
Alignment explanation
Indices: 105054048--105054084 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
105054038 AACATAAATT
105054048 CATACAATTTAAGAATAA
1 CATACAATTTAAGAATAA
*
105054066 CATACAATTTAAGACTAA
1 CATACAATTTAAGAATAA
105054084 C
1 C
105054085 CTATGCTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (18 bp):
CATACAATTTAAGAATAA
Found at i:105055334 original size:50 final size:50
Alignment explanation
Indices: 105055151--105055448 Score: 355
Period size: 50 Copynumber: 5.9 Consensus size: 50
105055141 ATCCATTGTG
* * *
105055151 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATACTT
* * *
105055201 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-ACTT
* * * * * **
105055251 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATACTT
* * *
105055301 AGGTCACGTGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-ACTT
* * * * **
105055352 CGATCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATACTT
* *
105055402 AGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
105055449 GTTTTGGCTA
Statistics
Matches: 205, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 41 0.20
50 85 0.41
51 79 0.39
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATACTT
Found at i:105055336 original size:101 final size:101
Alignment explanation
Indices: 105055154--105055698 Score: 628
Period size: 101 Copynumber: 5.3 Consensus size: 101
105055144 CATTGTGAGG
** * * ** * *
105055154 TCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
*
105055218 TAAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
105055254 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
*
105055319 TAAGTGCAGGTTACTATGCGTACCCGATAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* *
105055355 TCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
* * ** * *
105055420 TAAGTGCAGGCCACTATGCGTACCAGATAGTTTTGGC
66 TAAGTGCAGGCTACTATGCGTACCCGATA-ACTTCGA
* * * ** *
105055457 TACAAGTGTGAAAATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGC
1 T-C-A---CG------TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
*
105055521 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
55 GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* * *
105055568 TTACATGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
* * * * ** * *
105055633 TAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGG
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
105055668 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
105055699 TGCGTACCAG
Statistics
Matches: 374, Mismatches: 57, Indels: 28
0.81 0.12 0.06
Matches are distributed among these distances:
100 108 0.29
101 176 0.47
102 4 0.01
103 1 0.00
104 1 0.00
107 1 0.00
109 1 0.00
111 4 0.01
112 42 0.11
113 36 0.10
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:105055627 original size:213 final size:214
Alignment explanation
Indices: 105055259--105055648 Score: 656
Period size: 213 Copynumber: 1.8 Consensus size: 214
105055249 TTCGATCATG
* ** *
105055259 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
* * * *
105055324 GCAGGTTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACGATGT
66 GCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACGACGT
105055389 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGTTTT
131 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGTTTT
105055454 GGCTACAAGTGTGAAAATA
196 GGCTACAAGTGTGAAAATA
* *
105055473 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
* *
105055537 GCAGGCTACTATGCGTACCCGATAACTTCGATTACATGTGTAGTACTAAGTACAGGCTACTACGT
66 GCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACGACGT
*
105055602 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
131 GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCCACTA
105055649 CGTGTATCAG
Statistics
Matches: 163, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
213 125 0.77
214 38 0.23
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (214 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACGACGT
GTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGTTTT
GGCTACAAGTGTGAAAATA
Found at i:105055648 original size:50 final size:50
Alignment explanation
Indices: 105055472--105055712 Score: 295
Period size: 50 Copynumber: 4.8 Consensus size: 50
105055462 GTGTGAAAAT
* * *
105055472 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * * * * *
105055521 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATTAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTAGGTCAC
* * *
105055572 ATGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * *
105055622 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * *
105055672 GTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
105055713 CTTTGGCTAC
Statistics
Matches: 167, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
49 36 0.22
50 94 0.56
51 37 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
Found at i:105055676 original size:263 final size:265
Alignment explanation
Indices: 105055207--105055739 Score: 766
Period size: 263 Copynumber: 2.0 Consensus size: 265
105055197 AATTGGTCGC
* **
105055207 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTCGATCATGTGTGTAGTACTAA
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGATCACATGTGTAGTACTAA
* * ** * * * * *
105055272 GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGTTACTATG
66 GTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGTACAGGCTACTACG
* * *
105055337 CGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTT
131 CGTACCAGATAACTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTATCAGATGGTT
*
105055402 AGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGTTTTGGCTACAAGTGTG
196 AGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG
105055467 AAAAT
261 AAAAT
* * *
105055472 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCATGTGTAGTACTAA
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGATCACATGTGTAGTACTAA
* * * *
105055535 GTGCAGGCTACTATGCGTACCCGATAACTTCGATTACATGTGTAGTACTAAGTACAGGCTACTAC
66 GTGCAGGCTACTACGCGTACCAGAT-ACTTAGATCACATGTGTAGTACTAAGTACAGGCTACTAC
* * ** * *
105055600 GTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT
130 GCGTACCAGATAACTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTATCAGATGGT
*
105055664 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGT
195 TAGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGCTTTGGCTACAAGTGT
105055729 GAAAAT
260 GAAAAT
105055735 ATGTG
1 ATGTG
105055740 CAGGCAACTG
Statistics
Matches: 237, Mismatches: 30, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
263 158 0.67
264 40 0.17
265 39 0.16
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (265 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGATCACATGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGTACAGGCTACTACG
CGTACCAGATAACTTAGATCACGTGTGTAGTACTAAGTGCAGGCTACGACGTGTATCAGATGGTT
AGGTCACGTGTGTAGTACTAAGTGCAGGCCACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG
AAAAT
Found at i:105055743 original size:314 final size:314
Alignment explanation
Indices: 105055159--105055744 Score: 899
Period size: 314 Copynumber: 1.9 Consensus size: 314
105055149 TGAGGTCACG
*
105055159 TGTGTAGTACTAAGTGCAGGCTACTATATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
* ** *
105055224 CAGGCTACTATGTGTACCCGATAACTTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTG
66 CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACTACGTG
* * * *
105055289 TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTTCG
131 TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAG
* * * * *
105055354 ATCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
196 ATCACGTGTGTAGTACTAAGTGCAGGCTACGATGCGTACCAGATGCTTAGGTCAAGTGTGTAGAA
*
105055419 CTAAGTGCAGGCCACTATGCGTACCAGATAGTTTTGGCTACAAGTGTGAAAATA
261 ATAAGTGCAGGCCACTATGCGTACCAGATAGTTTTGGCTACAAGTGTGAAAATA
*
105055473 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
*
105055538 CAGGCTACTATGCGTACCCGATAACTTCGATTACATGTGTAGTACTAAGTACAGGCTACTACGTG
66 CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACTACGTG
* * **
105055603 TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAG
131 TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAG
* * *
105055667 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG-A
196 ATCACGTGTGTAGTACTAAGTGCAGGCTACGATGCGTACCAGAT-GCTTAGG-T-CAAGTGTGTA
*
105055731 -AAATATGTGCAGGC
258 GAAATAAGTGCAGGC
105055745 AACTGAGTAT
Statistics
Matches: 244, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
313 43 0.18
314 192 0.79
315 2 0.01
316 7 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (314 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTACAGGCTACTACGTG
TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAG
ATCACGTGTGTAGTACTAAGTGCAGGCTACGATGCGTACCAGATGCTTAGGTCAAGTGTGTAGAA
ATAAGTGCAGGCCACTATGCGTACCAGATAGTTTTGGCTACAAGTGTGAAAATA
Found at i:105059592 original size:13 final size:13
Alignment explanation
Indices: 105059574--105059607 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
105059564 TTTATGGTTT
*
105059574 ATGATTTCACGAA
1 ATGATTTCACAAA
*
105059587 ATGATTTCATAAA
1 ATGATTTCACAAA
105059600 ATGATTTC
1 ATGATTTC
105059608 TTGAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (13 bp):
ATGATTTCACAAA
Found at i:105060420 original size:50 final size:50
Alignment explanation
Indices: 105060245--105060527 Score: 304
Period size: 50 Copynumber: 5.7 Consensus size: 50
105060235 ATCTATTGTG
* * *
105060245 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CTGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAATT
* * * * * * *
105060295 -TGTCGA-ATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTC-ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAA-TT
* * * **
105060345 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* * **
105060395 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACGACATGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
105060445 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
105060495 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
105060528 TGCGTACCAG
Statistics
Matches: 196, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
49 65 0.33
50 96 0.49
51 35 0.18
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:105060456 original size:100 final size:100
Alignment explanation
Indices: 105060245--105060856 Score: 645
Period size: 100 Copynumber: 6.0 Consensus size: 100
105060235 ATCTATTGTG
* * * * * *
105060245 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CTGGATAATTTGTCGAATGTGTAA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAATTGGTCGCATGTGTAG
* * *
105060309 TACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
65 TACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
* * * ** * *
105060345 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCGCATGTGTAG
* ** * *
105060410 TACTAAGTGCAGGCTACGACATGTATCAGAT-GGTT
65 TACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
* *
105060445 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGT
*
105060510 ACTAAGTGCAGGCTACTATGCGTACCAGATAGCTT
66 ACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
* * * * *
105060545 TGGCTACAAGTGTGAAAATATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGT
1 AGG-T-C-A---CG------TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGT
* * * *
105060610 CGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
54 CGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
* * * ** * * * *
105060657 CGATCACATGTAAAGTACTAACTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGCAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCGCATGTGTAG
* * * *
105060722 TACTAAGTGTAGGCTACTACGTGTATCAGAT-GGTT
65 TACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
105060757 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGT
*
105060822 ACTAAGTGCAGGCTACTATGCGTACCAGATAGCTT
66 ACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
105060857 TGGCTACAAG
Statistics
Matches: 416, Mismatches: 79, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
99 77 0.19
100 173 0.42
101 73 0.18
102 1 0.00
103 1 0.00
106 1 0.00
109 1 0.00
110 1 0.00
111 1 0.00
112 87 0.21
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGCGTACCAGATAGCTT
Found at i:105060472 original size:25 final size:25
Alignment explanation
Indices: 105060394--105060472 Score: 58
Period size: 25 Copynumber: 3.2 Consensus size: 25
105060384 ATCAGATGGT
105060394 TAGGTCACGTGTGTAGTACTAAGTG
1 TAGGTCACGTGTGTAGTACTAAGTG
* * * *
105060419 CAGGCTACGACATGTATCAG-A-T-GGT-
1 TAGG-T-C-ACGTGTGT-AGTACTAAGTG
105060444 TAGGTCACGTGTGTAGTACTAAGTG
1 TAGGTCACGTGTGTAGTACTAAGTG
105060469 TAGG
1 TAGG
105060473 CTACTACGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
21 2 0.05
22 7 0.18
23 2 0.05
24 3 0.08
25 10 0.26
26 3 0.08
27 2 0.05
28 7 0.18
29 2 0.05
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (25 bp):
TAGGTCACGTGTGTAGTACTAAGTG
Found at i:105060818 original size:312 final size:312
Alignment explanation
Indices: 105060253--105060880 Score: 1094
Period size: 312 Copynumber: 2.0 Consensus size: 312
105060243 TGAGGTCACG
* * *
105060253 TGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATAATTTGTCGAATGTGTAATACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGAATGTGTAATACTAAGTG
** ** *
105060318 CAGGCTACTATGCGTACCCGATAACTTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTG
66 CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTAAAGTACTAACTGCAGGCTACTACGTG
* * *
105060383 TATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACGACATGTATCAGATGGTTAGG
131 TATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCTACGACATGTATCAGATGGTTAGG
* *
105060448 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACT
196 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACT
105060513 AAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAAATA
261 AAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAAATA
* *
105060565 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGTATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGAATGTGTAATACTAAGTG
105060630 CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTAAAGTACTAACTGCAGGCTACTACGTG
66 CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTAAAGTACTAACTGCAGGCTACTACGTG
* * *
105060695 TATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGG
131 TATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCTACGACATGTATCAGATGGTTAGG
105060760 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACT
196 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACT
105060825 AAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAAATA
261 AAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAAATA
105060877 TGTG
1 TGTG
105060881 CAGGCAACTG
Statistics
Matches: 298, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
312 298 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (312 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGAATGTGTAATACTAAGTG
CAGGCTACTATGCGTACCCGATAACTTCGATCACATGTAAAGTACTAACTGCAGGCTACTACGTG
TATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCTACGACATGTATCAGATGGTTAGG
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTGAAAATA
Found at i:105060851 original size:49 final size:50
Alignment explanation
Indices: 105060564--105060852 Score: 339
Period size: 50 Copynumber: 5.8 Consensus size: 50
105060554 GTGTGAAAAT
* * **
105060564 ATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCGT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCAC
* * * * *
105060613 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCAC
** * * *
105060664 ATGTAAAGTACTAACTGCAGGCTACTACGTGTATCAGATAGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCAC
* * * **
105060714 ATGTGCAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCAC
* * *
105060764 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCAC
* *
105060813 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
105060853 GCTTTGGCTA
Statistics
Matches: 206, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 78 0.38
50 92 0.45
51 36 0.17
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCAC
Found at i:105063852 original size:43 final size:43
Alignment explanation
Indices: 105063791--105063966 Score: 298
Period size: 43 Copynumber: 4.1 Consensus size: 43
105063781 CCTTGCTCGA
** *
105063791 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
105063834 ATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
105063877 ATCACCGGCACGAAGCTTGCTAGGCACGAAGGCCCGAAAACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
105063920 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
105063963 ATCA
1 ATCA
105063967 TCGAGTTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.32, C:0.31, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:105065725 original size:37 final size:37
Alignment explanation
Indices: 105065667--105065774 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
105065657 TAGCTCGAAT
* *
105065667 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
105065704 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
105065741 AATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
105065775 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:105065973 original size:48 final size:48
Alignment explanation
Indices: 105065915--105066156 Score: 403
Period size: 48 Copynumber: 5.0 Consensus size: 48
105065905 ATATACACAC
* *
105065915 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
105065963 ATCTCATACATACTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
105066011 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
105066059 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
105066107 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
105066155 AT
1 AT
105066157 ATTTATCTTG
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 180 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:105069797 original size:46 final size:46
Alignment explanation
Indices: 105069747--105069922 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
105069737 TGGTTGAGCA
105069747 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105069793 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
105069838 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105069886 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105069923 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:105069903 original size:93 final size:93
Alignment explanation
Indices: 105069744--105069915 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105069734 GGATGGTTGA
* *
105069744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105069809 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
105069837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105069902 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
105069916 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:105072012 original size:168 final size:168
Alignment explanation
Indices: 105071734--105072073 Score: 495
Period size: 168 Copynumber: 2.0 Consensus size: 168
105071724 AAGTTTGGGG
*
105071734 TGTGACAGCCCTAAAGTGACCCTAGTCGAAAAGCGATTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACAGCCCAAAAGTGACCCTAGTCGAAAAGCGATTTCGGGACCGCTAAACCGAGTCACCAAA
* * * * *
105071799 TTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
66 TTACTTGAACATAATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTTC
105071864 GATTTAGTCGATTGCATGTGAATTCAGCTAATAGGACT
131 GATTTAGTCGATTGCATGTGAATTCAGCTAATAGGACT
* ** * *
105071902 TGTGACAGCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAA
1 TGTGACAGCCCAAAAGTGACCCTAGTCGAAAAGCGATTTCGGGACCGCTAAACCGAGTCACC-AA
* * * *
105071967 A-TGCTTGAACGTAATATTTATTGTCTAGAATATGT-ATTTATGAATGTGTGAAAATTTCAAGCT
65 ATTACTTGAACATAATATTTATTGTCTAAAATATGTGA-ATATGAATGTGTGAAAATTTCAAGCT
* *
105072030 TCGATTTAGTCGATTGCATGTGAATTCAGTTATTAGGACT
129 TCGATTTAGTCGATTGCATGTGAATTCAGCTAATAGGACT
105072070 TGTG
1 TGTG
105072074 TGACACTTTT
Statistics
Matches: 153, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
167 1 0.01
168 149 0.97
169 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (168 bp):
TGTGACAGCCCAAAAGTGACCCTAGTCGAAAAGCGATTTCGGGACCGCTAAACCGAGTCACCAAA
TTACTTGAACATAATATTTATTGTCTAAAATATGTGAATATGAATGTGTGAAAATTTCAAGCTTC
GATTTAGTCGATTGCATGTGAATTCAGCTAATAGGACT
Found at i:105073756 original size:40 final size:41
Alignment explanation
Indices: 105073598--105073769 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 41
105073588 GTATCCGAGC
* * *
105073598 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAAGTTACTAAATCCGGGT
*
105073639 CAAGTCCC-AAGGCATTTGTGC-AAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAAGTTACTAAATCCGGGT
* *
105073678 TAATTCCCGAAGGCATTTGTGCG-AGTTACCAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAAGTTACTAAATCCGGGT
* * *
105073718 TAAGTCCCGAAGGCATTTGCGCGAA-TTATTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAAGTTACTA-AATCCGGGT
*
105073758 TATGTCCCGAAG
1 TAAGTCCCGAAG
105073770 ACAATCGAGC
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
39 23 0.20
40 82 0.71
41 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAAGTTACTAAATCCGGGT
Found at i:105076811 original size:40 final size:40
Alignment explanation
Indices: 105076756--105076972 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
105076746 CGGATGATAA
* * *
105076756 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
105076796 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
105076836 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
105076876 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
105076916 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
105076955 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
105076973 TACTTGGCTT
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 131 0.81
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:105084887 original size:40 final size:39
Alignment explanation
Indices: 105084827--105085080 Score: 250
Period size: 40 Copynumber: 6.5 Consensus size: 39
105084817 CGGATGATAA
* * * *
105084827 CCGGGCTAAGTCCCGTAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
105084867 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
105084907 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
105084947 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
105084987 CCGGGCTAAGT--CGAAGGCA-TTGGGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
105085024 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
105085063 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
105085081 TACTTGGCTT
Statistics
Matches: 187, Mismatches: 23, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
37 25 0.13
38 23 0.12
39 24 0.13
40 115 0.61
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:105085079 original size:77 final size:80
Alignment explanation
Indices: 105084827--105085080 Score: 286
Period size: 80 Copynumber: 3.2 Consensus size: 80
105084817 CGGATGATAA
* * * * ** *
105084827 CCGGGCTAAGTCCCGTAGGCATTTGCGCTAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGGGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
105084892 TGCGAGTTATTACAT
66 TGCGAGCTACTATAT
* * *
105084907 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGGGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
105084972 TGCTAGCTACTATAT
66 TGCGAGCTACTATAT
* *
105084987 CCGGGCTAAGT--CGAAGGCA-TTGGGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGGGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
105085048 AGCGAG-TAGCTATAT
66 TGCGAGCTA-CTATAT
* *
105085063 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
105085081 TACTTGGCTT
Statistics
Matches: 149, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
75 8 0.05
76 15 0.10
77 41 0.28
78 7 0.05
80 78 0.52
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGGGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCTACTATAT
Found at i:105088612 original size:15 final size:16
Alignment explanation
Indices: 105088574--105088618 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
105088564 ATCAACAAGG
105088574 TAAACAAGAAAAA-AAT
1 TAAACAA-AAAAAGAAT
105088590 TAAA-AAAAAAAGAA-
1 TAAACAAAAAAAGAAT
*
105088604 TAAACAAAACAAGAA
1 TAAACAAAAAAAGAA
105088619 AAAAAACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.35
15 13 0.50
16 4 0.15
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.09
Consensus pattern (16 bp):
TAAACAAAAAAAGAAT
Found at i:105088624 original size:12 final size:12
Alignment explanation
Indices: 105088575--105088627 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
105088565 TCAACAAGGT
105088575 AAACAAGAAAAA
1 AAACAAGAAAAA
**
105088587 AATTAA-AAAAA
1 AAACAAGAAAAA
* * *
105088598 AAAGAATAAACA
1 AAACAAGAAAAA
105088610 AAACAAGAAAAA
1 AAACAAGAAAAA
105088622 AAACAA
1 AAACAA
105088628 AGGCACTATC
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
11 9 0.28
12 23 0.72
ACGTcount: A:0.81, C:0.08, G:0.06, T:0.06
Consensus pattern (12 bp):
AAACAAGAAAAA
Found at i:105091901 original size:15 final size:16
Alignment explanation
Indices: 105091881--105091913 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
105091871 ATATATATTT
105091881 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
105091896 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
105091913 T
1 T
105091914 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:105091986 original size:21 final size:22
Alignment explanation
Indices: 105091960--105092018 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
105091950 GTTTTAAGAA
*
105091960 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
105091981 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
105092003 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
105092019 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:105092033 original size:26 final size:24
Alignment explanation
Indices: 105091989--105092038 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
105091979 ATTTGTTTTA
*
105091989 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
105092013 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
105092039 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:105096281 original size:157 final size:157
Alignment explanation
Indices: 105096071--105096383 Score: 572
Period size: 157 Copynumber: 2.0 Consensus size: 157
105096061 GTTTTTGGAA
* *
105096071 ATGACATTGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
*
105096136 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATTTGGTAATTGTCGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
*
105096201 TTTAGTTTGGTTAGATGTTCTCTTTAG
131 TTTAGTTTGGTTAGACGTTCTCTTTAG
*
105096228 ATGACATTGCAATGTTCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
*
105096293 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTTGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
105096358 TTTAGTTTGGTTAGACGTTCTCTTTA
131 TTTAGTTTGGTTAGACGTTCTCTTTA
105096384 TATTACTCAA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 150 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (157 bp):
ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
TTTAGTTTGGTTAGACGTTCTCTTTAG
Found at i:105097098 original size:22 final size:22
Alignment explanation
Indices: 105097073--105097116 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
105097063 TAGTCATATA
105097073 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
105097095 ATAAATTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
105097117 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:105097152 original size:13 final size:14
Alignment explanation
Indices: 105097136--105097177 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
105097126 TTTCAATTTT
105097136 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
105097149 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
105097164 ATTTTAAATAATAT
1 ATTTT-AATAATAT
105097178 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:105097162 original size:16 final size:16
Alignment explanation
Indices: 105097140--105097176 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
105097130 AATTTTATTT
105097140 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
105097157 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
105097172 TAATA
1 TAATA
105097177 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:105097229 original size:15 final size:15
Alignment explanation
Indices: 105097209--105097266 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
105097199 ATTCAATATT
105097209 AATATTTTAATAATA
1 AATATTTTAATAATA
*
105097224 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
105097243 AATATATTAATAATA
1 AATATTTTAATAATA
*
105097258 AATGTTTTA
1 AATATTTTA
105097267 TCGTATAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:105098089 original size:5 final size:5
Alignment explanation
Indices: 105098079--105098108 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
105098069 TAAAGGAAAA
105098079 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
1 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG
105098109 TGAAAGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:105106091 original size:17 final size:19
Alignment explanation
Indices: 105106071--105106108 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
105106061 TTTTTTGCAT
*
105106071 TTTTTAA-AAATA-AATTA
1 TTTTTAATAAACATAATTA
105106088 TTTTTAATAAACATAATTA
1 TTTTTAATAAACATAATTA
105106107 TT
1 TT
105106109 CATTTTCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 4 0.22
19 7 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTTAATAAACATAATTA
Found at i:105106657 original size:18 final size:18
Alignment explanation
Indices: 105106597--105106658 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
105106587 AAATTACAAA
*
105106597 AAAAGTATTAAAAAATAATT
1 AAAA-TATT-AAAATTAATT
* * *
105106617 AAAATAATAAATTTTA-T
1 AAAATATTAAAATTAATT
105106634 AGAAATATTAAAATTAATT
1 A-AAATATTAAAATTAATT
105106653 AAAATA
1 AAAATA
105106659 ATATAAAGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 2 0.06
18 22 0.67
19 5 0.15
20 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATTAAAATTAATT
Found at i:105107120 original size:18 final size:17
Alignment explanation
Indices: 105107090--105107133 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
105107080 TAATGGTTCT
105107090 TTTTAATAATTTTAATGA
1 TTTTAA-AATTTTAATGA
**
105107108 TTTTAAAATTTTTAATTT
1 TTTTAAAA-TTTTAATGA
105107126 TTTTAAAA
1 TTTTAAAA
105107134 AATAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTTAAAATTTTAATGA
Found at i:105107702 original size:18 final size:18
Alignment explanation
Indices: 105107679--105107715 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
105107669 ATTTGTATGT
105107679 AAAAGAAAATTCAAGCAG
1 AAAAGAAAATTCAAGCAG
105107697 AAAAGAAAATTCAAGCAG
1 AAAAGAAAATTCAAGCAG
105107715 A
1 A
105107716 CTTTATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.11
Consensus pattern (18 bp):
AAAAGAAAATTCAAGCAG
Found at i:105108680 original size:89 final size:89
Alignment explanation
Indices: 105108529--105108715 Score: 302
Period size: 89 Copynumber: 2.1 Consensus size: 89
105108519 GAGGTAGTAT
* * *
105108529 AGATGGAAGAATCACTGATGGAAAGTTTTAGAATGTAAAAGTTTAGCAGTTATGACAACCAAGAC
1 AGATGGAGGAATCACTGATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
*
105108594 TCACAAGTTGGAAACAATTATTCG
66 TCACAAGATGGAAACAATTATTCG
* *
105108618 AGATGGAGGAATCACTTATAGAAAGTTTTAGAATGTAAAAGTTTAGTAGCTATGACAACCAAGAC
1 AGATGGAGGAATCACTGATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
*
105108683 TCACAAGATGGAAACAATTATTCT
66 TCACAAGATGGAAACAATTATTCG
105108707 AGATAGGAG
1 AGAT-GGAG
105108716 TAGGAACTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 86 0.96
90 4 0.04
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (89 bp):
AGATGGAGGAATCACTGATAGAAAGTTTTAGAATGTAAAAGTTTAGCAGCTATGACAACCAAGAC
TCACAAGATGGAAACAATTATTCG
Found at i:105114423 original size:37 final size:37
Alignment explanation
Indices: 105114373--105114470 Score: 151
Period size: 37 Copynumber: 2.6 Consensus size: 37
105114363 AGTCCCTACT
* * *
105114373 CGTAGTTAGCGGGTCTCACCCGGACAAAATCTCCACA
1 CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
* *
105114410 CGTAGTCATCGGGTCTTACCTGGACATAATCTCCACA
1 CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
105114447 CGTAGTCATCGGGTCTTACCCGGA
1 CGTAGTCATCGGGTCTTACCCGGA
105114471 ATATATTTCC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (37 bp):
CGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACA
Found at i:105114672 original size:48 final size:48
Alignment explanation
Indices: 105114611--105115044 Score: 719
Period size: 48 Copynumber: 9.0 Consensus size: 48
105114601 ATATACACAC
* * *
105114611 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
105114659 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
105114707 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
105114755 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
105114803 ATCTCATATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
105114851 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
105114899 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
105114947 ATCTCAAATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
*
105114995 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
105115043 AT
1 AT
105115045 ATTTGTCTTG
Statistics
Matches: 362, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 2 0.01
48 358 0.99
49 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:105128502 original size:44 final size:46
Alignment explanation
Indices: 105128438--105128526 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
105128428 ACCAAATACA
* *
105128438 AATAATTAACAATAAGTACTATGTAATTTAGTT-A-TATTTAGTAT
1 AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTAT
* *
105128482 AATAATTTATAATAAATACTATATAATTTAGTTAATTATTTAGTA
1 AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTA
105128527 GGTTAAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 29 0.74
45 1 0.03
46 9 0.23
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (46 bp):
AATAATTAACAATAAATACTATATAATTTAGTTAATTATTTAGTAT
Found at i:105133630 original size:19 final size:19
Alignment explanation
Indices: 105133595--105133692 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
105133585 AGATTACAAG
105133595 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
105133616 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105133635 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
105133652 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
* *
105133671 ATCATAACTAAGATTGAAT
1 ATCATATCTAAGATTGCAT
105133690 ATC
1 ATC
105133693 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
20 1 0.01
21 8 0.11
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:105133637 original size:14 final size:15
Alignment explanation
Indices: 105133617--105133673 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
105133607 AGATTGCATA
105133617 TCATATCTAAGATTG
1 TCATATCTAAGATTG
105133632 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
105133651 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
105133668 -CATATC
1 TCATATC
105133674 ATAACTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:105133659 original size:36 final size:37
Alignment explanation
Indices: 105133595--105133692 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
105133585 AGATTACAAG
105133595 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
105133635 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
*
105133671 ATCATAACTAAGATTGAATATC
1 ATCATATCTAAGATTG-ATATC
105133693 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:105133852 original size:13 final size:11
Alignment explanation
Indices: 105133812--105133844 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
105133802 GACTTGGACT
105133812 TTATTTTATTT-
1 TTATTTT-TTTA
105133823 TTATTTTTTTA
1 TTATTTTTTTA
105133834 TTATTTTTTTA
1 TTATTTTTTTA
105133845 ACTTATTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.14
11 18 0.86
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTATTTTTTTA
Found at i:105136046 original size:47 final size:47
Alignment explanation
Indices: 105135977--105136070 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
105135967 AAAGGTAGTA
* *
105135977 ACTGTAACGATTTTTTTGGGTAAACACGGTTTTAAATACATTTTCAT
1 ACTGTAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
105136024 ACTGTAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
1 ACTGTAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
105136071 GTGACTTCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (47 bp):
ACTGTAACAATTTTTTTGGGTAAACACGGTTTTAAATACATTCTCAT
Found at i:105148063 original size:21 final size:21
Alignment explanation
Indices: 105148039--105148081 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
105148029 ACACCCATTT
105148039 AGTTCCTATATCTAGAAGATC
1 AGTTCCTATATCTAGAAGATC
* *
105148060 AGTTCCTATATTTGGAAGATC
1 AGTTCCTATATCTAGAAGATC
105148081 A
1 A
105148082 CTAGGTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (21 bp):
AGTTCCTATATCTAGAAGATC
Found at i:105149755 original size:46 final size:46
Alignment explanation
Indices: 105149685--105149909 Score: 170
Period size: 47 Copynumber: 4.8 Consensus size: 46
105149675 TGAGTTGTGC
* **
105149685 GCCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACA-TTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGG-CACAGAGATGAGA
*
105149731 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCACAGAGATGAGA
* * * * * * *
105149778 GCCAGAGTAAGATATGTCTGGGACATGCATCGACCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCG-GCAC-AGAGATGAGA
* * * * *
105149825 GCCAGTGTAAGACATG-CTTGGGACACGCATCAGCATGCATATATGAGA
1 GCCAGTGTAAGACATGTC-TAGGACATGCATCGGCA--CAGAGATGAGA
**
105149873 GCCAAAGTAAGACCATGTCTAGGACATGGCATCGGCA
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCA
105149910 ATTTATCCCA
Statistics
Matches: 141, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
46 36 0.26
47 68 0.48
48 18 0.13
49 10 0.07
50 9 0.06
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCACAGAGATGAGA
Found at i:105154132 original size:21 final size:24
Alignment explanation
Indices: 105154088--105154132 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
105154078 AGAATGCCTC
*
105154088 ATGGTGAAATGTTCTTCTTCCAAT
1 ATGGTGAAATGTTCTGCTTCCAAT
105154112 ATGGTGAAAT-TT-TGC-TCCAAT
1 ATGGTGAAATGTTCTGCTTCCAAT
105154133 GCCATGAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 2 0.10
24 10 0.50
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (24 bp):
ATGGTGAAATGTTCTGCTTCCAAT
Found at i:105158084 original size:17 final size:17
Alignment explanation
Indices: 105158062--105158098 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
105158052 ATTTGTTGCT
105158062 GGTGTCAACAACCAAAA
1 GGTGTCAACAACCAAAA
105158079 GGTGTCAACAACCAAAA
1 GGTGTCAACAACCAAAA
105158096 GGT
1 GGT
105158099 CTGAGTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.14
Consensus pattern (17 bp):
GGTGTCAACAACCAAAA
Found at i:105162828 original size:40 final size:40
Alignment explanation
Indices: 105162754--105162895 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
105162744 AACCCAAGTA
* *
105162754 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
105162793 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
105162833 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
105162873 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
105162896 CATTCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:105167991 original size:29 final size:28
Alignment explanation
Indices: 105167957--105168059 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
105167947 TAATCGTTCA
105167957 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
105167986 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
105168015 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
105168044 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
105168060 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:105176077 original size:29 final size:28
Alignment explanation
Indices: 105176043--105176145 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
105176033 TAATCGTTCA
105176043 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATGT-ATTTAAGCT
* **
105176072 CGCACACATAGTGCCA-GATAGTCCAAGCT
1 CGCACACTTAGTGCCATG-TA-TTTAAGCT
**
105176101 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATGTATTT-AAGCT
*
105176130 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
105176146 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTTAAGCT
Found at i:105181726 original size:2 final size:2
Alignment explanation
Indices: 105181719--105181754 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
105181709 ATTTAGACAT
105181719 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105181755 AAAAACAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:105182240 original size:13 final size:14
Alignment explanation
Indices: 105182203--105182252 Score: 57
Period size: 13 Copynumber: 3.4 Consensus size: 14
105182193 TTATTTAAAT
*
105182203 ATAATTAAATATTA
1 ATAAATAAATATTA
105182217 ATTAATTATAAATATT-
1 A-TAA--ATAAATATTA
105182233 ATAAATAAATATTA
1 ATAAATAAATATTA
105182247 ATAAAT
1 ATAAAT
105182253 TCAGTTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 9 0.29
14 7 0.23
15 6 0.19
16 1 0.03
17 8 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATAAATATTA
Found at i:105182719 original size:20 final size:20
Alignment explanation
Indices: 105182694--105182732 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
105182684 ATCAGATTCG
*
105182694 ATATTATTTATTATATATGT
1 ATATTATGTATTATATATGT
105182714 ATATTATGTATTATATATG
1 ATATTATGTATTATATATG
105182733 CAAATATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATATTATGTATTATATATGT
Found at i:105188901 original size:34 final size:34
Alignment explanation
Indices: 105188828--105188902 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
105188818 ATACTGCATG
** *
105188828 ACTGC-TACTGATACTGTGATGGGCTAAGGCCTT
1 ACTGCATACTGATACCATGATGGGCTAAGACCTT
*
105188861 AATGCATACTGATACCATGATGGGCTAAGACAC-T
1 ACTGCATACTGATACCATGATGGGCTAAGAC-CTT
105188895 ACTGCATA
1 ACTGCATA
105188903 TTTGATACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
33 4 0.11
34 30 0.86
35 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (34 bp):
ACTGCATACTGATACCATGATGGGCTAAGACCTT
Found at i:105192702 original size:21 final size:21
Alignment explanation
Indices: 105192676--105192726 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
105192666 GTCAGCTTAA
105192676 GACACATGAGGCGAACTATCT
1 GACACATGAGGCGAACTATCT
*
105192697 GACACATAAGGCGAACTATCT
1 GACACATGAGGCGAACTATCT
105192718 GACACATGA
1 GACACATGA
105192727 TTTGGAACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (21 bp):
GACACATGAGGCGAACTATCT
Found at i:105195271 original size:53 final size:54
Alignment explanation
Indices: 105195190--105195397 Score: 208
Period size: 53 Copynumber: 3.9 Consensus size: 54
105195180 TTTCCTTTTT
* * * * **
105195190 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATA
* * *
105195243 GAACTCACCAATGTCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTATA
* * *
105195297 GTAACTCATCC-ATGCCATGTCTTGCCATGGTCTTACATGAT-TGCCTTGCCTTATA
1 G-AACTCA-CCAATGCCATGCCTTGGCATGGTCTTACATGGTAT-CCTTGCCTTATA
* * * *
105195352 GAAATTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
105195398 ATCTTACCAA
Statistics
Matches: 127, Mismatches: 20, Indels: 15
0.78 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 42 0.33
54 37 0.29
55 42 0.33
56 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:105195326 original size:55 final size:53
Alignment explanation
Indices: 105195201--105195389 Score: 186
Period size: 55 Copynumber: 3.5 Consensus size: 53
105195191 AACTTACCAT
* * ** *
105195201 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTCA-CCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTGCCTTATAGAACTCATCC-A
* *
105195254 TGTCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCCA
1 TGCCATGCCTTGGCATGGTCTTACATGGGACC-TTGCCTTATAG-AACTCATCCA
* * * * * *
105195309 TGCCATGTCTTGCCATGGTCTTACATGATTG-CCTTGCCTTATAGAAATTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATG--GGACCTTGCCTTATAGAACTCATCCA
105195363 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGGCATGGTCTTACATG
105195390 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 33 0.29
55 41 0.36
56 4 0.04
57 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTGCCTTATAGAACTCATCCA
Found at i:105195431 original size:47 final size:47
Alignment explanation
Indices: 105195376--105195497 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
105195366 CATGCCTTGG
* * *
105195376 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
*
105195423 CATGGTCTTACAAGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
105195470 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
105195498 GTGCCAAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCAATGTTCCAAA
Found at i:105197557 original size:155 final size:154
Alignment explanation
Indices: 105197275--105197581 Score: 515
Period size: 155 Copynumber: 2.0 Consensus size: 154
105197265 TTCTGAGGCA
* * *
105197275 GTTAGGAGGATTATCTGCTGTTAGTAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
1 GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
105197340 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
66 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
105197405 CGAGAAACATGTTCCAGGTTCTACC
131 CGAGAAAC-TGTTCCAGGTTCTACC
*
105197430 GTTAGGAGGATTATCTACCGTTAGCAGAGTTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
1 GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
* *
105197495 ATGGCACCTTACGAGGCACTATGTGGTCGTAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
66 ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
* ** *
105197560 TGAGTGACTGTTCTAGGTTCTA
131 CGAGAAACTGTTCCAGGTTCTA
105197582 AATTGGTTTC
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
154 13 0.09
155 129 0.91
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (154 bp):
GTTAGGAGGATTATCTACCGTTAGCAGAATTTGCCTATAATAATAGTTACCAGTCTAGCATCCAG
ATGGCACCTTACGAGGCACTATATGGTCATAAGTGTCGCACTCCCTTATGTTGGACTGAGTTGGG
CGAGAAACTGTTCCAGGTTCTACC
Found at i:105203459 original size:27 final size:28
Alignment explanation
Indices: 105203422--105203561 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
105203412 AGCATGGCTG
* *
105203422 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
105203448 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
105203476 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
105203503 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
105203530 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
105203557 CCAGA
1 CCAGA
105203562 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:105205303 original size:78 final size:78
Alignment explanation
Indices: 105205170--105205331 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
105205160 TATGAAATTC
*
105205170 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
105205235 TTTACCTAACCTA
66 TTTACCTAACCTA
* *
105205248 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAAGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
105205313 TTTACCTAACCTA
66 TTTACCTAACCTA
105205326 TTATCA
1 TTATCA
105205332 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
TTTACCTAACCTA
Found at i:105205332 original size:26 final size:26
Alignment explanation
Indices: 105205170--105205331 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
105205160 TATGAAATTC
105205170 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
105205196 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105205222 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105205248 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105205274 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
105205300 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105205326 TTATCA
1 TTATCA
105205332 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:105209475 original size:21 final size:22
Alignment explanation
Indices: 105209439--105209484 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
105209429 ATTATTATTA
* *
105209439 TTATTAAACTTTTTTTAAATTG
1 TTATTAAACATTTTTTAAAGTG
105209461 TTATT-AACATTTTTTAAAGTG
1 TTATTAAACATTTTTTAAAGTG
105209482 TTA
1 TTA
105209485 ACTTGAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (22 bp):
TTATTAAACATTTTTTAAAGTG
Found at i:105216737 original size:25 final size:25
Alignment explanation
Indices: 105216709--105216756 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105216699 TTATACCATG
* * *
105216709 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105216734 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105216757 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105216825 original size:20 final size:20
Alignment explanation
Indices: 105216800--105216858 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
105216790 TAAATATGGT
105216800 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
105216820 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
105216840 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
105216859 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:105216840 original size:11 final size:11
Alignment explanation
Indices: 105216804--105216858 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
105216794 TATGGTATGT
105216804 ATGATATGCAC
1 ATGATATGCAC
* *
105216815 ATGAAATG--T
1 ATGATATGCAC
105216824 ATGATATGCAC
1 ATGATATGCAC
*
105216835 ATGATATG--T
1 ATGATATGCAC
105216844 ATGATATGCAC
1 ATGATATGCAC
105216855 ATGA
1 ATGA
105216859 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:105216936 original size:24 final size:24
Alignment explanation
Indices: 105216909--105217027 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
105216899 GAGGAAGTGA
*
105216909 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
105216933 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105216956 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105216980 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105217004 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105217028 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105216978 original size:47 final size:48
Alignment explanation
Indices: 105216909--105217027 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
105216899 GAGGAAGTGA
105216909 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
105216956 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
105217004 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105217028 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:105217271 original size:30 final size:31
Alignment explanation
Indices: 105217219--105217312 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
105217209 CGTTTACAGT
105217219 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
105217250 AAAGGCTTCGGCCCA-TAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
105217280 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
105217311 AA
1 AA
105217313 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 30 0.49
31 31 0.51
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:105224857 original size:25 final size:25
Alignment explanation
Indices: 105224829--105224876 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105224819 TTATACCATG
* * *
105224829 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105224854 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105224877 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105224945 original size:20 final size:20
Alignment explanation
Indices: 105224920--105224978 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
105224910 TAAATATGGT
105224920 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
105224940 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
105224960 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
105224979 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:105224960 original size:11 final size:11
Alignment explanation
Indices: 105224924--105224978 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
105224914 TATGGTATGT
105224924 ATGATATGCAC
1 ATGATATGCAC
* *
105224935 ATGAAATG--T
1 ATGATATGCAC
105224944 ATGATATGCAC
1 ATGATATGCAC
*
105224955 ATGATATG--T
1 ATGATATGCAC
105224964 ATGATATGCAC
1 ATGATATGCAC
105224975 ATGA
1 ATGA
105224979 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:105225056 original size:24 final size:24
Alignment explanation
Indices: 105225029--105225147 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
105225019 GAGGAAGTGA
*
105225029 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
105225053 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105225076 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105225100 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105225124 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105225148 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105225098 original size:47 final size:48
Alignment explanation
Indices: 105225029--105225147 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
105225019 GAGGAAGTGA
105225029 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
105225076 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
105225124 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105225148 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:105225374 original size:31 final size:31
Alignment explanation
Indices: 105225339--105225402 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
105225329 CGTTTACAGT
105225339 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
105225370 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
105225401 AA
1 AA
105225403 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:105234519 original size:40 final size:40
Alignment explanation
Indices: 105234318--105234528 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
105234308 TGTTCGGATG
* * *
105234318 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTGACT
*
105234358 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* * *
105234398 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
105234438 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
105234477 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
105234517 ATATCC-GGCTAA
1 ATAACCGGGCTAA
105234529 ACTTCGAAGG
Statistics
Matches: 152, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
39 44 0.29
40 104 0.68
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:105234538 original size:79 final size:80
Alignment explanation
Indices: 105234318--105234528 Score: 304
Period size: 79 Copynumber: 2.7 Consensus size: 80
105234308 TGTTCGGATG
105234318 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
105234381 CATTTGTGCGAGCTACT
64 CATTTGTGCAAGCTACT
* * * ***
105234398 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
*
105234462 TTTGTGCAAGTTACT
66 TTTGTGCAAGCTACT
105234477 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
105234529 ACTTCGAAGG
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
79 77 0.68
80 34 0.30
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCAAGCTACT
Found at i:105238699 original size:79 final size:81
Alignment explanation
Indices: 105238598--105238781 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
105238588 ACGACTCGCT
** * *
105238598 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
105238661 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
105238678 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
105238742 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
105238758 CAAA-GCCTT-GGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
105238782 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 6 0.07
79 61 0.68
80 23 0.26
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:105238712 original size:39 final size:40
Alignment explanation
Indices: 105238591--105238781 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
105238581 GGATATAACG
* ** *
105238591 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
105238631 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
105238671 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
105238710 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
105238750 ACTTAGCACAAA-GCCTT-GGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
105238782 CATCATTCGA
Statistics
Matches: 124, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 40 0.32
40 73 0.59
41 9 0.07
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:105248797 original size:16 final size:16
Alignment explanation
Indices: 105248776--105248807 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
105248766 TTTATAGAAT
*
105248776 ACAAAAATATTAATAA
1 ACAAAAATATCAATAA
105248792 ACAAAAATATCAATAA
1 ACAAAAATATCAATAA
105248808 GGAATATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (16 bp):
ACAAAAATATCAATAA
Found at i:105251046 original size:13 final size:13
Alignment explanation
Indices: 105251028--105251069 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
105251018 AAACCCTAAA
*
105251028 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
*
105251041 TTTTCTTTCTATCT
1 TTTTC-TTCTTTCT
105251055 TTTTCTTCTTTCT
1 TTTTCTTCTTTCT
105251068 TT
1 TT
105251070 CCCCTGTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:105251193 original size:25 final size:26
Alignment explanation
Indices: 105251130--105251196 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
105251120 TTTTGCTATT
* * *
105251130 ATTATTATTATATTATAATATAATAT
1 ATTATTATTATATAATAAGATAATAC
*
105251156 ATATTTTACTTATATAATAAGA-AATAC
1 AT-TATTA-TTATATAATAAGATAATAC
105251183 ATTATTATTATATA
1 ATTATTATTATATA
105251197 CATATGATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
25 7 0.21
26 6 0.18
27 10 0.29
28 11 0.32
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (26 bp):
ATTATTATTATATAATAAGATAATAC
Found at i:105255761 original size:21 final size:23
Alignment explanation
Indices: 105255733--105255798 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
105255723 CCTGATCAGT
105255733 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
105255755 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
105255777 ATATGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
105255799 TTGATAAAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
21 15 0.43
22 4 0.11
23 16 0.46
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:105256198 original size:15 final size:15
Alignment explanation
Indices: 105256170--105256227 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
105256160 TCATATATAT
*
105256170 TATATAATTTAATCAA
1 TATA-AATTCAATCAA
105256186 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
105256201 AATAATTTCAATCAA
1 TATAAATTCAATCAA
105256216 TATAAATTCAAT
1 TATAAATTCAAT
105256228 AAAATAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:105256216 original size:30 final size:28
Alignment explanation
Indices: 105256173--105256233 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 28
105256163 TATATATTAT
105256173 ATAATTTAATCAATATAAATTCAATCAAA
1 ATAATTTAATCAATATAAATTCAAT-AAA
105256202 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAATTT-AATCAATATAAATTCAATAAA
105256231 ATA
1 ATA
105256234 GATATTCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTTAATCAATATAAATTCAATAAA
Found at i:105256390 original size:2 final size:2
Alignment explanation
Indices: 105256383--105256420 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
105256373 ATATCTCATT
105256383 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
105256421 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:105256425 original size:2 final size:2
Alignment explanation
Indices: 105256420--105256457 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
105256410 ACACACACAC
*
105256420 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105256458 ATTCAATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105258637 original size:21 final size:21
Alignment explanation
Indices: 105258605--105258655 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
105258595 GTATATAATT
105258605 CATATATTCCATATATTATCAA
1 CATAT-TTCCATATATTATCAA
*
105258627 CATATTTCCATATATTGTCAA
1 CATATTTCCATATATTATCAA
105258648 CATATTTC
1 CATATTTC
105258656 ACATTCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 23 0.82
22 5 0.18
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (21 bp):
CATATTTCCATATATTATCAA
Found at i:105258716 original size:16 final size:17
Alignment explanation
Indices: 105258684--105258716 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105258674 ACTATACCAT
*
105258684 TTTCATTTCTCATATCA
1 TTTCATTTCTAATATCA
105258701 TTTCATTTC-AATATCA
1 TTTCATTTCTAATATCA
105258717 ATTGTAAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTCATTTCTAATATCA
Found at i:105258862 original size:25 final size:25
Alignment explanation
Indices: 105258828--105258879 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
105258818 ATCGGATAAT
105258828 TCGAAGTAATAATTGACACACAGTG
1 TCGAAGTAATAATTGACACACAGTG
105258853 TCGAAGTAATAATTGACACACAGTG
1 TCGAAGTAATAATTGACACACAGTG
105258878 TC
1 TC
105258880 TCATCGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (25 bp):
TCGAAGTAATAATTGACACACAGTG
Found at i:105259824 original size:13 final size:13
Alignment explanation
Indices: 105259806--105259847 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
105259796 AAACCCTAAA
*
105259806 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
*
105259819 TTTTCTTTCTGTCT
1 TTTTC-TTCTTTCT
105259833 TTTTCTTCTTTCT
1 TTTTCTTCTTTCT
105259846 TT
1 TT
105259848 CCCCTGTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:105260069 original size:24 final size:24
Alignment explanation
Indices: 105260042--105260107 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
105260032 CATAATTTGG
*
105260042 TTTAATTACTTAT-TTATTTTATAC
1 TTTAATTA-TTATATTATATTATAC
105260066 TTTAATTATTATATTATATTATA-
1 TTTAATTATTATATTATATTATAC
105260089 -TT-A-TATTATATTATATTAT
1 TTTAATTATTATATTATATTAT
105260108 TTTTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 16 0.40
21 1 0.03
22 2 0.05
23 4 0.10
24 17 0.43
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTAATTATTATATTATATTATAC
Found at i:105260080 original size:5 final size:5
Alignment explanation
Indices: 105260072--105260107 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
105260062 ATACTTTAAT
105260072 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
105260108 TTTTTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:105260504 original size:30 final size:31
Alignment explanation
Indices: 105260470--105260530 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
105260460 TAATTACTTA
*
105260470 AAAATATT-TAAAATTAA-TATTTTATATATT
1 AAAATATTAT-AAATAAATTATTTTATATATT
*
105260500 AAAATATTATCAATAAATTATTTTATATATT
1 AAAATATTATAAATAAATTATTTTATATATT
105260531 CTTGCTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (31 bp):
AAAATATTATAAATAAATTATTTTATATATT
Found at i:105261622 original size:14 final size:15
Alignment explanation
Indices: 105261598--105261626 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105261588 ATATCAAATT
105261598 ATGTCAAAAATTAAA
1 ATGTCAAAAATTAAA
105261613 ATGT-AAAAATTAAA
1 ATGTCAAAAATTAAA
105261627 TCTCAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (15 bp):
ATGTCAAAAATTAAA
Found at i:105261957 original size:23 final size:22
Alignment explanation
Indices: 105261931--105261991 Score: 88
Period size: 22 Copynumber: 2.7 Consensus size: 22
105261921 TTATCTCTCC
105261931 TAGGGTTAAGGTTTTTATTTTAT
1 TAGGGTTAAGG-TTTTATTTTAT
105261954 TAGGGTTAAGGTTTT-TTTTAT
1 TAGGGTTAAGGTTTTATTTTAT
*
105261975 TAGGGTTTAGGGTTTTA
1 TAGGG-TTAAGGTTTTA
105261992 GGGTTTTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
21 11 0.31
22 13 0.37
23 11 0.31
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (22 bp):
TAGGGTTAAGGTTTTATTTTAT
Found at i:105261974 original size:21 final size:21
Alignment explanation
Indices: 105261931--105261990 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
105261921 TTATCTCTCC
105261931 TAGGGTTAAGGTTTTTATTTTAT
1 TAGGGTTAAGG-TTTT-TTTTAT
105261954 TAGGGTTAAGGTTTTTTTTAT
1 TAGGGTTAAGGTTTTTTTTAT
* *
105261975 TAGGGTTTAGGGTTTT
1 TAGGGTTAAGGTTTTT
105261991 AGGGTTTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 20 0.57
22 4 0.11
23 11 0.31
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (21 bp):
TAGGGTTAAGGTTTTTTTTAT
Found at i:105261993 original size:8 final size:8
Alignment explanation
Indices: 105261974--105262002 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
105261964 GTTTTTTTTA
105261974 TTAGGG-T
1 TTAGGGTT
105261981 TTAGGGTT
1 TTAGGGTT
105261989 TTAGGGTT
1 TTAGGGTT
105261997 TTAGGG
1 TTAGGG
105262003 AAGTGTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (8 bp):
TTAGGGTT
Found at i:105266904 original size:3 final size:3
Alignment explanation
Indices: 105266896--105266951 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
105266886 CCTATAGACT
105266896 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
105266944 TCA TCA TC
1 TCA TCA TC
105266952 GCCTGAGTAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:105269391 original size:18 final size:18
Alignment explanation
Indices: 105269349--105269486 Score: 226
Period size: 18 Copynumber: 7.7 Consensus size: 18
105269339 ATCTTCAATG
105269349 TGCAATCTTAGATATGA-
1 TGCAATCTTAGATATGAT
*
105269366 TACAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
105269384 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
105269402 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
105269420 ATGCAATCTTAGATATGA-
1 -TGCAATCTTAGATATGAT
*
105269438 TACAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
105269456 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
105269474 ATGCAATCTTAGA
1 -TGCAATCTTAGA
105269487 AGATATGATT
Statistics
Matches: 113, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
17 32 0.28
18 52 0.46
19 29 0.26
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
TGCAATCTTAGATATGAT
Found at i:105269466 original size:72 final size:71
Alignment explanation
Indices: 105269349--105269493 Score: 265
Period size: 72 Copynumber: 2.0 Consensus size: 71
105269339 ATCTTCAATG
105269349 TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGAT-TGCAATCTTAG
1 TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATGCAATCTTAG
105269413 ATATGATA
66 A-A-GATA
105269421 TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATGCAATCTTAG
1 TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATGCAATCTTAG
105269486 AAGATA
66 AAGATA
105269492 TG
1 TG
105269494 ATTTTGTAAT
Statistics
Matches: 72, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
71 6 0.08
72 54 0.75
73 12 0.17
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (71 bp):
TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATGCAATCTTAG
AAGATA
Found at i:105269512 original size:22 final size:22
Alignment explanation
Indices: 105269375--105269509 Score: 103
Period size: 18 Copynumber: 7.0 Consensus size: 22
105269365 ATACAATCTT
105269375 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
105269393 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
105269411 AGATATGATATGCAATCTT---
1 AGATATGATATGCAATCTTAGA
105269430 AGATATGATA--CAATCTT---
1 AGATATGATATGCAATCTTAGA
105269447 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
105269465 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
105269487 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
105269510 GATTTAATTT
Statistics
Matches: 107, Mismatches: 2, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
17 16 0.15
18 43 0.40
19 28 0.26
22 8 0.07
23 12 0.11
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:105271378 original size:18 final size:18
Alignment explanation
Indices: 105271351--105271388 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
105271341 TAAAAATTAA
105271351 AAAATATAAAT-TAAATAT
1 AAAATATAAATGT-AATAT
*
105271369 AAAATTTAAATGTAATAT
1 AAAATATAAATGTAATAT
105271387 AA
1 AA
105271389 GGAAAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATAAATGTAATAT
Found at i:105272990 original size:23 final size:21
Alignment explanation
Indices: 105272963--105273012 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
105272953 TTCGAAATTT
*
105272963 AATTTTTTATCTTTATTTTTAA
1 AATTTTATAT-TTTATTTTTAA
* *
105272985 GAATTTAATATTTTATTTTTTA
1 -AATTTTATATTTTATTTTTAA
105273007 AATTTT
1 AATTTT
105273013 CAAATTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 5 0.22
22 10 0.43
23 8 0.35
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
AATTTTATATTTTATTTTTAA
Done.