Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 363 of 444
Found at i:105611294 original size:47 final size:48
Alignment explanation
Indices: 105611215--105611333 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
105611205 GCTTTATCAT
* *
105611215 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AATCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
105611264 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
105611311 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
105611334 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 2 0.03
47 42 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:105611407 original size:20 final size:20
Alignment explanation
Indices: 105611382--105611441 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
105611372 TATGATTACC
105611382 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
105611402 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
105611422 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
105611442 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:105619445 original size:44 final size:44
Alignment explanation
Indices: 105619395--105619482 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
105619385 TAAACTCATA
105619395 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
1 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
105619439 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
1 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
105619483 TTCTTTTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (44 bp):
CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
Found at i:105627718 original size:47 final size:48
Alignment explanation
Indices: 105627649--105627873 Score: 211
Period size: 47 Copynumber: 4.8 Consensus size: 48
105627639 TAAGGTATCA
* *
105627649 ATGCCATGTCCTAGACATGGTCTTACAATGGCTCAT-ATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCG
*
105627696 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATAG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGTC-G
* * * * * *
105627744 ATG-CATGTCCCCAG-CAT-CTCTTACACTGGCTTA-CGTCTTGAGGTTG
1 ATGCCATGT-CCCAGACATGGTCTTACACTGGCTCATCATC-TCAAGTCG
* * *
105627790 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATTCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT-CG
*
105627836 ATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT
105627874 AAGGTTTCTG
Statistics
Matches: 147, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
45 8 0.05
46 50 0.34
47 61 0.41
48 28 0.19
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCG
Found at i:105627827 original size:46 final size:43
Alignment explanation
Indices: 105627695--105627915 Score: 135
Period size: 46 Copynumber: 4.7 Consensus size: 43
105627685 ATCTCAAGTC
* * *
105627695 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTG-CTCTCGTCT--TAGTT
*
105627743 GATGCATGTCCCCAG-CATCTCTTACACTGGCT-TACGTCTTGAGGTT
1 GATGCATGT-CCCAGACATGTCTTACACT-GCTCT-CGTCTT-A-GTT
* *
105627789 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATT
1 GATGCATGTCCCAGACATGTCTTACACT-GCTCTCGTCTTAGTT
* * *
105627833 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC--ATAAGGTTTCT
1 --GATG-CATGTCCCAGACAT-GTCTTACACT-GCTCTCGTCTTA-G--T-T
*
105627883 GATGCATGTCCTAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACT-GCTC
105627916 ACACACAAAT
Statistics
Matches: 143, Mismatches: 15, Indels: 32
0.75 0.08 0.17
Matches are distributed among these distances:
44 3 0.02
45 8 0.06
46 66 0.46
47 35 0.24
48 29 0.20
49 1 0.01
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (43 bp):
GATGCATGTCCCAGACATGTCTTACACTGCTCTCGTCTTAGTT
Found at i:105627891 original size:47 final size:46
Alignment explanation
Indices: 105627788--105627915 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
105627778 GTCTTGAGGT
* **
105627788 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATTC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACAATTC
* * * ***
105627834 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAGGTTTC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAACAATTC
*
105627882 TGATGCATGTCCTAGACATGTCTTACACTAGCTC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTC
105627916 ACACACAAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 18 0.27
47 25 0.37
48 24 0.36
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACAATTC
Found at i:105627906 original size:140 final size:140
Alignment explanation
Indices: 105627653--105627910 Score: 324
Period size: 140 Copynumber: 1.8 Consensus size: 140
105627643 GTATCAATGC
* * *
105627653 CATGTCCTAGACATGGTCTTACAATGGCTCATATCTCAAGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACAATAGCTCATATCTCAAGTCGATGCCATGTCCCAAACATGGTC
**
105627718 TTACACTGACTATCATCTCATAGCTGATGCATGTCCCCAGCATCTCTTACACTGGCTTACGTCTT
66 TTACACTGACTATCATAACATAGCTGATGCATGTCCCCAGCATCTCTTACACTGGCTTACGTCTT
105627783 GAGGTTGATG
131 GAGGTTGATG
* * *
105627793 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATTCCGATGCCATGTCCCAAACATGG
1 CATGTCCCAGACATGGTCTTACAATAGCTCAT-ATCTCAAGT-CGATGCCATGTCCCAAACATGG
* * ** ** * *
105627856 TCTTACACTGGCTCTCATAAGGTTTCTGATGCATGT-CCTAGACATGTCTTACACT
64 TCTTACACTGACTATCATAACATAGCTGATGCATGTCCCCAG-CATCTCTTACACT
105627911 AGCTCACACA
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
138 1 0.01
139 24 0.24
140 74 0.75
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACAATAGCTCATATCTCAAGTCGATGCCATGTCCCAAACATGGTC
TTACACTGACTATCATAACATAGCTGATGCATGTCCCCAGCATCTCTTACACTGGCTTACGTCTT
GAGGTTGATG
Found at i:105629966 original size:18 final size:17
Alignment explanation
Indices: 105629943--105629976 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
105629933 TAGCTGTGCC
105629943 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
105629961 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
105629977 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:105631198 original size:9 final size:9
Alignment explanation
Indices: 105631186--105631262 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
105631176 TTTGATAAAC
105631186 ATGATATGT
1 ATGATATGT
*
105631195 ATGATATGCAC
1 ATGATATG--T
105631206 ATGATATGT
1 ATGATATGT
*
105631215 ATGATATGCAC
1 ATGATATG--T
*
105631226 ATGACATGT
1 ATGATATGT
*
105631235 ATGATATGCAC
1 ATGATATG--T
105631246 ATGATATGT
1 ATGATATGT
105631255 ATGATATG
1 ATGATATG
105631263 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:105631211 original size:11 final size:11
Alignment explanation
Indices: 105631195--105631266 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
105631185 CATGATATGT
105631195 ATGATATGCAC
1 ATGATATGCAC
*
105631206 ATGATATG--T
1 ATGATATGCAC
105631215 ATGATATGCAC
1 ATGATATGCAC
* *
105631226 ATGACATG--T
1 ATGATATGCAC
105631235 ATGATATGCAC
1 ATGATATGCAC
*
105631246 ATGATATG--T
1 ATGATATGCAC
105631255 ATGATATGCAC
1 ATGATATGCAC
105631266 A
1 A
105631267 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:105631274 original size:20 final size:20
Alignment explanation
Indices: 105631184--105631266 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
105631174 ATTTTGATAA
105631184 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
105631204 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
105631224 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
105631244 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
105631264 ACA
1 ACA
105631267 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:105631400 original size:24 final size:24
Alignment explanation
Indices: 105631320--105631413 Score: 131
Period size: 23 Copynumber: 3.9 Consensus size: 24
105631310 GAGGAAGTGA
105631320 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
105631344 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
105631367 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
105631391 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
105631414 AATGATAAAG
Statistics
Matches: 64, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
23 29 0.45
24 19 0.30
25 16 0.25
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105631642 original size:31 final size:31
Alignment explanation
Indices: 105631607--105631667 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
105631597 CATTTACAGT
105631607 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
105631638 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
105631668 AAATATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:105635868 original size:27 final size:27
Alignment explanation
Indices: 105635830--105635887 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
105635820 ACTCTCTAAT
*
105635830 TGATAAAATGACTATTATGCCCATGTG
1 TGATAAAATGACTATTATGCCCATATG
* *
105635857 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCATATG
105635884 TGAT
1 TGAT
105635888 GTATGATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCATATG
Found at i:105637116 original size:28 final size:29
Alignment explanation
Indices: 105637080--105637155 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
105637070 AAGAATAGAA
* *
105637080 ACAAAGGCTTCCATATATCTGAGAACA-T
1 ACAAAGGCTTCCATATATATGAGAACACC
* * *
105637108 ACAAAGGCTTCCACATATATGATAATAGCC
1 ACAAAGGCTTCCATATATATGAGAACA-CC
105637138 ACAAAGGCTTCCATATAT
1 ACAAAGGCTTCCATATAT
105637156 TCGGTAAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 23 0.57
30 17 0.43
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.25
Consensus pattern (29 bp):
ACAAAGGCTTCCATATATATGAGAACACC
Found at i:105654811 original size:30 final size:30
Alignment explanation
Indices: 105654775--105654834 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
105654765 ATTAGAATTT
*
105654775 CATCGATAAATACAAAAACAAATCTGTCTA
1 CATCGATAAATACAAAAACAAATCTATCTA
105654805 CATCGATAAATACAAAAACAAATCTATCTA
1 CATCGATAAATACAAAAACAAATCTATCTA
105654835 AGTACGGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.20, G:0.05, T:0.23
Consensus pattern (30 bp):
CATCGATAAATACAAAAACAAATCTATCTA
Found at i:105661227 original size:12 final size:13
Alignment explanation
Indices: 105661199--105661231 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
105661189 TTAGTTCTTT
105661199 TTCTCCATCTACC
1 TTCTCCATCTACC
*
105661212 TTCTCC-TCTTCC
1 TTCTCCATCTACC
105661224 TTCTCCAT
1 TTCTCCAT
105661232 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:105662342 original size:28 final size:28
Alignment explanation
Indices: 105662298--105662362 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
105662288 ATCTACTAGA
*
105662298 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* * *
105662326 ATACTCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
105662354 ATACCCCTA
1 ATACCCCTA
105662363 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:105662509 original size:28 final size:27
Alignment explanation
Indices: 105662468--105662557 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
105662458 AGGAAGCGTC
*
105662468 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
105662496 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
105662523 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
105662552 CTGGTG
1 CTGGTG
105662558 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:105662526 original size:27 final size:28
Alignment explanation
Indices: 105662468--105662557 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
105662458 AGGAAGCGTC
* *
105662468 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
105662496 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
105662523 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
105662552 CTGGTG
1 CTGGTG
105662558 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:105662568 original size:29 final size:28
Alignment explanation
Indices: 105662478--105662568 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
105662468 CTGGTGGCTA
* * * *
105662478 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
105662506 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
105662533 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
105662562 TGTCACA
1 TGCCACA
105662569 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:105662576 original size:55 final size:56
Alignment explanation
Indices: 105662468--105662582 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
105662458 AGGAAGCGTC
* * *
105662468 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
105662523 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
105662579 CTGG
1 CTGG
105662583 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:105668719 original size:144 final size:144
Alignment explanation
Indices: 105668548--105668817 Score: 371
Period size: 144 Copynumber: 1.9 Consensus size: 144
105668538 CTCATAACAG
* * *
105668548 TGCCGATGCCATGTCCCAGACATGGTCTTATACGAGACCTCATATCAATGCCAATGCCATGTCCC
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATATCCC
* * *
105668613 AGATATGGTCTTACATGGGATCTCATGTGGATGCCAATGCCATATCCCCA-ATATGGTCTTACAT
66 AGATACGGTCTTACAAGGGATCTCATATGGATGCCAATGCCATAT-CCCAGATATGGTCTTACAT
105668677 GGGATTTCATATCGA
130 GGGATTTCATATCGA
* * * * * *
105668692 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATCTCGATGCCAATGCTATATCCC
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATATCCC
* ** * *
105668757 AGATACGGTCTTACAAGGGATCTCATATTGATGCTGATTCCATATCTCAGATATGGTCTTA
66 AGATACGGTCTTACAAGGGATCTCATATGGATGCCAATGCCATATCCCAGATATGGTCTTA
105668818 TACAGGATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
143 3 0.03
144 105 0.97
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (144 bp):
TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATATCCC
AGATACGGTCTTACAAGGGATCTCATATGGATGCCAATGCCATATCCCAGATATGGTCTTACATG
GGATTTCATATCGA
Found at i:105668777 original size:48 final size:48
Alignment explanation
Indices: 105668548--105668817 Score: 317
Period size: 48 Copynumber: 5.6 Consensus size: 48
105668538 CTCATAACAG
* * * * * * * *
105668548 TGCCGATGCCATGTCCCAGACATGGTCTTATACGAGACCTCATATCAA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
* * *
105668596 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCTCATGTGGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
*
105668644 TGCCAATGCCATATCCCCA-ATATGGTCTTACATGGGATTTCATATCGA
1 TGCCAATGCCATAT-CCCAGATATGGTCTTACATGGGATCTCATATCGA
* * *
105668692 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATCTCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
* * * *
105668740 TGCCAATGCTATATCCCAGATACGGTCTTACAAGGGATCTCATATTGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
** * *
105668788 TGCTGATTCCATATCTCAGATATGGTCTTA
1 TGCCAATGCCATATCCCAGATATGGTCTTA
105668818 TACAGGATTT
Statistics
Matches: 191, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 4 0.02
48 183 0.96
49 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
Found at i:105673521 original size:53 final size:54
Alignment explanation
Indices: 105673417--105673613 Score: 164
Period size: 53 Copynumber: 3.6 Consensus size: 54
105673407 TTTCCTTTTT
* * * * * *
105673417 AAACTTACCATTTCCATGTCTTAACATGGTCTTACGTG-GTATCCTTACCTTATG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGAG-ATCCTTGCCTTATG
* * * * *
105673471 -AACTCACCATTTCCATGCCTTGGCATGGTCTTACATGAGATCTTTGCCTTATAG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTAT-G
* ** * * * ** *
105673525 TAGTTTATCAATGACATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATG
* *
105673579 AAACTTACCAATGCCATGCCTTGGCATGGTTTTAC
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTAC
105673614 TTGGTATTCT
Statistics
Matches: 112, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
53 43 0.38
54 30 0.27
55 39 0.35
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATG
Found at i:105681255 original size:21 final size:20
Alignment explanation
Indices: 105681217--105681255 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
105681207 GTTGAAATGG
* *
105681217 TTATGGATAAATGGCATGAT
1 TTATGAATAAATAGCATGAT
105681237 TTATGAATAGAATAGCATG
1 TTATGAATA-AATAGCATG
105681256 TTTTGGTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (20 bp):
TTATGAATAAATAGCATGAT
Found at i:105700291 original size:11 final size:11
Alignment explanation
Indices: 105700277--105700311 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
105700267 GTTATTTTCT
105700277 TTTTCTTTTTA
1 TTTTCTTTTTA
*
105700288 TTTTCTTTTAA
1 TTTTCTTTTTA
105700299 TTTTTCTTTTTA
1 -TTTTCTTTTTA
105700311 T
1 T
105700312 GTTTATTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTTTTTA
Found at i:105700291 original size:12 final size:12
Alignment explanation
Indices: 105700271--105700311 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
105700261 GATGAGGTTA
*
105700271 TTTTCTTTTTCT
1 TTTTATTTTTCT
105700283 TTTTA-TTTTCT
1 TTTTATTTTTCT
*
105700294 TTTAATTTTTCT
1 TTTTATTTTTCT
105700306 TTTTAT
1 TTTTAT
105700312 GTTTATTCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTATTTTTCT
Found at i:105700302 original size:17 final size:17
Alignment explanation
Indices: 105700268--105700308 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
105700258 AATGATGAGG
**
105700268 TTATTTTCTTTTTCTTT
1 TTATTTTCTTTTAATTT
105700285 TTATTTTCTTTTAATTT
1 TTATTTTCTTTTAATTT
*
105700302 TTCTTTT
1 TTATTTT
105700309 TATGTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (17 bp):
TTATTTTCTTTTAATTT
Found at i:105700316 original size:29 final size:31
Alignment explanation
Indices: 105700271--105700333 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
105700261 GATGAGGTTA
* * *
105700271 TTTTCTTTTTCTTTTTATTTTCT-TTTA-AT
1 TTTTCTTTTTATGTTTATTCTCTCTTTATAT
105700300 TTTTCTTTTTATGTTTATTCTCTCTTTATAT
1 TTTTCTTTTTATGTTTATTCTCTCTTTATAT
105700331 TTT
1 TTT
105700334 GAACTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 20 0.69
30 4 0.14
31 5 0.17
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.76
Consensus pattern (31 bp):
TTTTCTTTTTATGTTTATTCTCTCTTTATAT
Found at i:105702521 original size:40 final size:40
Alignment explanation
Indices: 105702422--105702535 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
105702412 TTCGAATGGT
* * * * *
105702422 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTTCCGAAGGCATTTGTGC-GAGTGACCAA
* **
105702463 ATCCGGGTCAA-TTCCCGAAGGCATTTGTGCGAGTTCCCAA
1 ATCCGGGTTAAGTT-CCGAAGGCATTTGTGCGAGTGACCAA
*
105702503 ATCCGGGTTAAGTTCCGAAGGCATTTGTACGAG
1 ATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAG
105702536 CTATTATAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
40 35 0.57
41 26 0.43
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTGACCAA
Found at i:105715388 original size:30 final size:30
Alignment explanation
Indices: 105715343--105715429 Score: 111
Period size: 30 Copynumber: 2.9 Consensus size: 30
105715333 ACGACCATCC
* *
105715343 CACACGGGCGCGTGGCCTGCCCGTGTGTCT
1 CACACGGGCGTGTGGCCTACCCGTGTGTCT
* *
105715373 CACATGGGCGTGTGGCCTACCTGTGTGTCT
1 CACACGGGCGTGTGGCCTACCCGTGTGTCT
* **
105715403 CACACGGGCATGTGGTTTACCCGTGTG
1 CACACGGGCGTGTGGCCTACCCGTGTG
105715430 AAAGTGTCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.10, C:0.30, G:0.34, T:0.25
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCTACCCGTGTGTCT
Found at i:105718779 original size:8 final size:8
Alignment explanation
Indices: 105718737--105718761 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
105718727 ATATAGACTA
105718737 AATAAAAT
1 AATAAAAT
105718745 AATAAAAT
1 AATAAAAT
105718753 AATAAAAT
1 AATAAAAT
105718761 A
1 A
105718762 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:105718785 original size:29 final size:31
Alignment explanation
Indices: 105718734--105718802 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
105718724 CATATATAGA
*
105718734 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
105718763 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
105718794 CTAATTAAA
1 CTAATTAAA
105718803 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:105720896 original size:2 final size:2
Alignment explanation
Indices: 105720889--105720929 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
105720879 CATAATTTCT
105720889 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
105720930 GTTCAGTACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:105721424 original size:26 final size:26
Alignment explanation
Indices: 105721395--105721444 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
105721385 GACCAATTCC
*
105721395 TATAAACATTTCACACAACCATTTTG
1 TATAAACAATTCACACAACCATTTTG
* * *
105721421 TATAACCAATTCATATAACCATTT
1 TATAAACAATTCACACAACCATTT
105721445 GTCATCTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (26 bp):
TATAAACAATTCACACAACCATTTTG
Found at i:105721427 original size:13 final size:13
Alignment explanation
Indices: 105721375--105721444 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 13
105721365 TTGTACATAT
*
105721375 ATTTCCATATGACC
1 ATTT-CATATAACC
* * *
105721389 AATTCCTATAAAC
1 ATTTCATATAACC
* *
105721402 ATTTCACACAACC
1 ATTTCATATAACC
**
105721415 ATTTTGTATAACC
1 ATTTCATATAACC
*
105721428 AATTCATATAACC
1 ATTTCATATAACC
105721441 ATTT
1 ATTT
105721445 GTCATCTGGT
Statistics
Matches: 39, Mismatches: 17, Indels: 1
0.68 0.30 0.02
Matches are distributed among these distances:
13 36 0.92
14 3 0.08
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:105721592 original size:46 final size:47
Alignment explanation
Indices: 105721532--105721639 Score: 137
Period size: 46 Copynumber: 2.3 Consensus size: 47
105721522 TTCGACATGA
* * ** * *
105721532 TGCCATAGTGTCTTTCAATTATGGTCTTACTCATTT-TCGGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCCGTCAGGT
* *
105721578 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCCGTCAGGT
105721625 TGCCATGGTATCTTT
1 TGCCATGGTATCTTT
105721640 TGTGACACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 31 0.58
47 22 0.42
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.43
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCCGTCAGGT
Found at i:105724223 original size:48 final size:48
Alignment explanation
Indices: 105724152--105724748 Score: 960
Period size: 48 Copynumber: 12.3 Consensus size: 48
105724142 TGTACAAGAT
* **
105724152 AAATATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724200 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
* *
105724250 AAATAAGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * * * *
105724298 AAAAATATATGAGATATGTATATGTGGCAAAGCCAAATGGCTACTATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
105724346 AAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
105724394 AAATATGTATGAGAAATGTATATATGTGGTAAAGTCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
105724444 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
105724492 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
105724540 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724588 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724638 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724686 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724734 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
105724749 GTGTGTATAT
Statistics
Matches: 515, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
48 379 0.74
50 136 0.26
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:105724404 original size:194 final size:194
Alignment explanation
Indices: 105724152--105724748 Score: 1050
Period size: 194 Copynumber: 3.1 Consensus size: 194
105724142 TGTACAAGAT
**
105724152 AAATATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
*
105724217 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGTATATGTGGTAAAG
66 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
* * * * * *
105724282 CCGAATGGCTACTGTGAAAAATATATGAGATATGTATATGTGGCAAAGCCAAATGGCTACTATG
131 CCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724346 AAATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAAAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
*
105724411 GTATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
66 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
105724476 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
131 CCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
105724540 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
105724605 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
66 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
105724670 CCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
131 CCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
105724734 AAATATGTAGGAGAT
1 AAATATATATGAGAT
105724749 GTGTGTATAT
Statistics
Matches: 385, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
194 385 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (194 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
CCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:105724758 original size:146 final size:144
Alignment explanation
Indices: 105724152--105724748 Score: 960
Period size: 146 Copynumber: 4.1 Consensus size: 144
105724142 TGTACAAGAT
* ** *
105724152 AAATATATATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
*
105724217 GTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGTATATGTGGTAAAG
66 G--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
105724282 CCGAATGGCTACTGTG
129 CCGAATGGCTAATGTG
* * * * * * *
105724298 AAAAATATATGAGATATGTATATGTGGCAAAGCCAAATGGCTACTATGAAATATATATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
* *
105724363 GTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TATATGTGGTAAAG
*
105724428 TCGAATGGCTAATGTG
129 CCGAATGGCTAATGTG
105724444 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
105724509 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
105724574 GAATGGCTAATGTG
131 GAATGGCTAATGTG
*
105724588 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
105724653 ATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAG
64 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
105724718 CCGAATGGCTAGTGTG
129 CCGAATGGCTAATGTG
*
105724734 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
105724749 GTGTGTATAT
Statistics
Matches: 418, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
144 91 0.22
146 327 0.78
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (144 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTG
Found at i:105725852 original size:46 final size:46
Alignment explanation
Indices: 105725780--105725898 Score: 186
Period size: 46 Copynumber: 2.6 Consensus size: 46
105725770 GGGGTGTTAC
* ** *
105725780 ATCTTTCAACCATGTTCTTATTCATTTCATGTC-TCGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCAT-GTTGCCATGGT
105725826 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
105725872 ATCTTTCAACCATGGTCTTACACATTT
1 ATCTTTCAACCATGGTCTTACACATTT
105725899 GAATCGCGAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 67 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
Found at i:105725932 original size:45 final size:45
Alignment explanation
Indices: 105725817--105725982 Score: 161
Period size: 45 Copynumber: 3.7 Consensus size: 45
105725807 CATGTCTCGT
* * * * *
105725817 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGA-ATCGTGA
* * *
105725863 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTGAATCGCGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
* * * * * * *
105725908 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTCTGAACCGTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
* * *
105725953 TGCCATAGTGTCTTTTAGCTATGGTCTTAC
1 TGCCATAGTGTCTTTCAACCATGGTCTTAC
105725983 TTATTTCTGG
Statistics
Matches: 104, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 67 0.64
46 37 0.36
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTGAATCGTGA
Found at i:105726050 original size:33 final size:34
Alignment explanation
Indices: 105725998--105726153 Score: 90
Period size: 33 Copynumber: 4.7 Consensus size: 34
105725988 TCTGGTATGA
* * *
105725998 TGCCATAGTCCAACTATGGTCTTACA-CATGTAT
1 TGCCATAGCCCAGCCATGGTCTTACATCATGTAT
* * * *
105726031 TGCCATGGCCTAGCCATGGTCATACACTCATG--G
1 TGCCATAGCCCAGCCATGGTCTTACA-TCATGTAT
* ** *
105726064 TGCCATATCCCAGATATGGTCTTATCATCA-GGA-
1 TGCCATAGCCCAGCCATGGTCTTA-CATCATGTAT
* * * *
105726097 TGCCATAGCCTAGCTATGATCTTACA-CATATAT
1 TGCCATAGCCCAGCCATGGTCTTACATCATGTAT
** *
105726130 TGTGATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCCAGCCATGGTCTTA
105726154 TCCGTCAATT
Statistics
Matches: 91, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
31 2 0.02
32 4 0.04
33 79 0.87
34 2 0.02
35 4 0.04
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (34 bp):
TGCCATAGCCCAGCCATGGTCTTACATCATGTAT
Found at i:105726393 original size:45 final size:45
Alignment explanation
Indices: 105726342--105726434 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
105726332 ACTTACCTGA
105726342 CTAAATTGCAGAAATACCAAAATTCAGGAGCATTTTAGAAATTTT
1 CTAAATTGCAGAAATACCAAAATTCAGGAGCATTTTAGAAATTTT
105726387 CTAAATTGCAGAAATACCAAAATTCAGGAGCATTTTAGAAATTTT
1 CTAAATTGCAGAAATACCAAAATTCAGGAGCATTTTAGAAATTTT
105726432 CTA
1 CTA
105726435 TGTTTCTCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (45 bp):
CTAAATTGCAGAAATACCAAAATTCAGGAGCATTTTAGAAATTTT
Found at i:105728967 original size:8 final size:8
Alignment explanation
Indices: 105728925--105728949 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
105728915 ATATAGATTA
105728925 AATAAAAT
1 AATAAAAT
105728933 AATAAAAT
1 AATAAAAT
105728941 AATAAAAT
1 AATAAAAT
105728949 A
1 A
105728950 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:105728973 original size:29 final size:31
Alignment explanation
Indices: 105728927--105728990 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
105728917 ATAGATTAAA
*
105728927 TAAAATAATAAAATAATAA-AA-TATCTTAT
1 TAAAATAATAAAATAATAATAATTATCTAAT
*
105728956 TAAAAT-ATTAAATAAATAATAATTATCTAAT
1 TAAAATAATAAAAT-AATAATAATTATCTAAT
105728987 TAAA
1 TAAA
105728991 TAACTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 6 0.20
29 11 0.37
30 2 0.07
31 11 0.37
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (31 bp):
TAAAATAATAAAATAATAATAATTATCTAAT
Found at i:105729260 original size:29 final size:30
Alignment explanation
Indices: 105729203--105729270 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
105729193 CACCCTTAAA
* * * * *
105729203 ATATTTGCACTATTAGTCCTTCAACTTTTT
1 ATATTTACACTATTAATCCCTCAAATTTTG
105729233 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTG
105729262 AGTATTTAC
1 A-TATTTAC
105729271 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTG
Found at i:105730045 original size:11 final size:11
Alignment explanation
Indices: 105730029--105730081 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
105730019 GACAAGTCTT
*
105730029 TAAAATAAACA
1 TAAAATAAAAA
105730040 TAAAATAAAAA
1 TAAAATAAAAA
*
105730051 TAAAGTGAAAAA
1 TAAAAT-AAAAA
* *
105730063 TAAAAGATAAA
1 TAAAATAAAAA
105730074 -AAAATAAA
1 TAAAATAAA
105730082 TGGACTCAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 6 0.18
11 19 0.56
12 9 0.26
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:105738372 original size:23 final size:23
Alignment explanation
Indices: 105738346--105738392 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
105738336 CATTCTATTA
*
105738346 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
105738369 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
105738392 T
1 T
105738393 TATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:105771122 original size:94 final size:94
Alignment explanation
Indices: 105770960--105771147 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
105770950 CCATCTCAAG
105770960 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
1 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
105771025 TGTAGCAATCAAACATTGACAATAAATTA
66 TGTAGCAATCAAACATTGACAATAAATTA
* *
105771054 ATAGCAAACGCAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTGT
1 ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
105771119 TGTAGCAATCAAACATTGACAATAAATTA
66 TGTAGCAATCAAACATTGACAATAAATTA
105771148 TGTCAAACAA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (94 bp):
ATAGCAAACACAACATTAATATCAAGTCTTTGGACAGTAATATTAATAGTAAGCGGTACTCTTAT
TGTAGCAATCAAACATTGACAATAAATTA
Found at i:105771646 original size:2 final size:2
Alignment explanation
Indices: 105771641--105771671 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
105771631 TATAAATTCA
105771641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105771672 CTTTAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105777053 original size:93 final size:93
Alignment explanation
Indices: 105776938--105777110 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
105776928 CGCCCATAAG
* *
105776938 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
105777003 ACGAGCTCGGATGCCTAGTTATATCTCT
66 ACGAGCTCGAATGCCTAGTTATATCTCT
* *
105777031 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
105777096 ACGAGTTCGAATGCC
66 ACGAGCTCGAATGCC
105777111 CAAACATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTATATCTCT
Found at i:105777104 original size:46 final size:45
Alignment explanation
Indices: 105776931--105777100 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 45
105776921 TGTAACCCGC
* *
105776931 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
105776977 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A-T
* ** *
105777022 -TATATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
105777070 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
105777101 TTCGAATGCC
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 3 0.03
46 56 0.55
47 28 0.27
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:105777125 original size:46 final size:46
Alignment explanation
Indices: 105776982--105777125 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
105776972 CGCATCCACA
* * * *
105776982 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCA--TACATC-CT
* * * * *
105777031 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GA-ATGCCCATACATCCT
*
105777075 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCATACATCCT
105777121 AGTGA
1 AGTGA
105777126 CATGTCACTT
Statistics
Matches: 74, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 31 0.42
47 28 0.38
48 1 0.01
49 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCATACATCCT
Found at i:105780390 original size:21 final size:21
Alignment explanation
Indices: 105780366--105780407 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
105780356 CATTTACCAG
*
105780366 AAATTAAACCTGCTCAAAACA
1 AAATTAAACCAGCTCAAAACA
*
105780387 AAATTAAACCAGCTCGAAACA
1 AAATTAAACCAGCTCAAAACA
105780408 TGCCAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (21 bp):
AAATTAAACCAGCTCAAAACA
Found at i:105785699 original size:27 final size:27
Alignment explanation
Indices: 105785669--105785741 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
105785659 TTAGAAATCA
*
105785669 CCACAAAGATTATTCTTTCATAA-TCTG
1 CCACAAAGGTTATTCTTTCATAACTC-G
* *
105785696 CCACAATGGTTGTTCTTTCATAACTCG
1 CCACAAAGGTTATTCTTTCATAACTCG
* *
105785723 CCACGAAGGCTATTCTTTC
1 CCACAAAGGTTATTCTTTC
105785742 CTATCATTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (27 bp):
CCACAAAGGTTATTCTTTCATAACTCG
Found at i:105789247 original size:46 final size:45
Alignment explanation
Indices: 105789122--105789247 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 45
105789112 TATTTGTGTG
* * *
105789122 GCCAGTGTAAGACATGTCTGGGATATGCATCGGACTCGAGATGTAA
1 GCCAGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGATGT-A
*
105789168 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGT-
1 GCCAGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGATGTA
* *
105789212 GTCAGTGTAAGACCATGTATGAGACATCGCATCGGC
1 GCCAGTGTAAGA-CATGTATGGGACAT-GCATCGGC
105789248 ACGGATATGT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
44 11 0.15
45 12 0.17
46 49 0.68
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGATGTA
Found at i:105791155 original size:40 final size:39
Alignment explanation
Indices: 105790990--105791157 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
105790980 CAATTGAATG
* *
105790990 ATATCCGGGCTAAGTCCCGAAGACATTTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAGTGG---TT
* * * * *
105791030 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGC-AGTGGTT
* * *
105791070 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGC-AGTGGTT
* *
105791110 CTATCCGGGCTAAGACCCGAAGGCATTCATGCACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCA-GTGGTT
105791150 ATATCCGG
1 ATATCCGG
105791158 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 101 0.97
43 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCAGTGGTT
Found at i:105792864 original size:32 final size:32
Alignment explanation
Indices: 105792823--105792886 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
105792813 TAACACAGGT
105792823 ATGTATGCCAAGCTCATGAGAAATGATTTCAG
1 ATGTATGCCAAGCTCATGAGAAATGATTTCAG
105792855 ATGTATGCCAAGCTCATGAGAAATGATTTCAG
1 ATGTATGCCAAGCTCATGAGAAATGATTTCAG
105792887 TTTTTTATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (32 bp):
ATGTATGCCAAGCTCATGAGAAATGATTTCAG
Found at i:105795953 original size:46 final size:46
Alignment explanation
Indices: 105795900--105796117 Score: 219
Period size: 46 Copynumber: 4.7 Consensus size: 46
105795890 GTTGCAAGTA
105795900 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
* * * *
105795946 TAAGACATGTCTGAGACATGCATCAACCTCGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
* * *
105795992 TAAGACATGTCTGGGACATGCATCGGCTTCGAGATGT--G-TCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCT-AGTG
* * * *
105796036 TAAGACCATGTCTCGGACATGGCATCTG-CACAGATATGTGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCA-AGATGT-A-AGCTAGTG
* *
105796086 CAAGACCATGTCTGGGACATGGCATCGGCCTC
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTC
105796118 GATTTTGATA
Statistics
Matches: 143, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 86 0.60
50 30 0.21
51 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTAAGCTAGTG
Found at i:105796061 original size:92 final size:92
Alignment explanation
Indices: 105795900--105796202 Score: 282
Period size: 92 Copynumber: 3.2 Consensus size: 92
105795890 GTTGCAAGTA
* *
105795900 TAAGA-CATGTCTGGGACATGCATCAGCCTCAAGATGTAAG-CTAGTGTAAGA-CATGTCTGAGA
1 TAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGT-AGTC-AGTGTAAGACCATGTCTG-GA
*
105795962 CATGCATCAACCTCGAGATGTAAGCCAGTG
63 CATGCATCAACCTAGAGATGTAAGCCAGTG
*
105795992 TAAGA-CATGTCTGGGACATGCATCGGCTTCGAGATGT-GTCAGTGTAAGACCATGTCTCGGACA
1 TAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGTCAGTGTAAGACCATGTCT-GGACA
** * *
105796055 TGGCATCTGCAC-AGATATGTGAGAGCTAGTG
65 T-GCATCAAC-CTAGAGATGT-A-AGCCAGTG
* **
105796086 CAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTCAGTGTAAGACCATGTCTGGG
1 TAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-GATG-TAGTCAGTGTAAGACCATGTCT-GG
* * *
105796151 ACATAACATCGA-CTTGATGGATG--AGCCAGTG
62 ACAT-GCATCAACCTAGA--GATGTAAGCCAGTG
105796182 TAAGACCATGTCTGGGACATG
1 TAAGACCATGTCTGGGACATG
105796203 GTATCGGCAT
Statistics
Matches: 175, Mismatches: 21, Indels: 27
0.78 0.09 0.12
Matches are distributed among these distances:
90 10 0.06
91 13 0.07
92 47 0.27
93 2 0.01
94 11 0.06
95 15 0.09
96 38 0.22
97 3 0.02
98 3 0.02
99 30 0.17
100 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (92 bp):
TAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGTCAGTGTAAGACCATGTCTGGACAT
GCATCAACCTAGAGATGTAAGCCAGTG
Found at i:105796200 original size:96 final size:95
Alignment explanation
Indices: 105795984--105796210 Score: 268
Period size: 96 Copynumber: 2.4 Consensus size: 95
105795974 TCGAGATGTA
*
105795984 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCGAGATGTGTCAGTGTAAGACCATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTGTCAGTGTAAGACCATGT
**
105796047 CTCGGACATGGCATCTGCACAGATATGTGAG
66 CTCGGACATAACATCTGCACAGA-ATGTGAG
* * **
105796078 AGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATG-T-GTCAGTGTAAGACCA
* *
105796143 TGTCTGGGACATAACATC-G-ACTTG-ATG-GATG
63 TGTCTCGGACATAACATCTGCAC-AGAATGTGA-G
*
105796174 AGCCAGTGTAAGACCATGTCTGGGACATGGTATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
105796211 ATTATACCCT
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
94 11 0.10
95 16 0.14
96 50 0.44
97 4 0.04
98 3 0.03
99 30 0.26
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTGTCAGTGTAAGACCATGT
CTCGGACATAACATCTGCACAGAATGTGAG
Found at i:105805835 original size:9 final size:9
Alignment explanation
Indices: 105805821--105805855 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
105805811 TTAGTACTTA
105805821 TTTTTTTTC
1 TTTTTTTTC
105805830 TTTTTTTTC
1 TTTTTTTTC
**
105805839 TTTTTTTGA
1 TTTTTTTTC
105805848 TTTTTTTT
1 TTTTTTTT
105805856 TAAATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.89
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:105806142 original size:118 final size:118
Alignment explanation
Indices: 105806000--105806212 Score: 399
Period size: 118 Copynumber: 1.8 Consensus size: 118
105805990 TTTTACCCAA
105806000 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
*
105806065 TCAGTCACGATTTGAGCCATACTCATAACCTCGGCTAGTGGAGTTTTACTTGT
66 TCAGTCACGATTTAAGCCATACTCATAACCTCGGCTAGTGGAGTTTTACTTGT
105806118 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
**
105806183 TCAGTCACGATTTAAGCTGTACTCATAACC
66 TCAGTCACGATTTAAGCCATACTCATAACC
105806213 ATGGAAAACA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 92 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (118 bp):
CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
TCAGTCACGATTTAAGCCATACTCATAACCTCGGCTAGTGGAGTTTTACTTGT
Found at i:105807128 original size:20 final size:20
Alignment explanation
Indices: 105807092--105807144 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
105807082 ATATTTAACT
*
105807092 AAAATAA-AAAAAATAAAAG
1 AAAATAATAAATAATAAAAG
105807111 AAAATAATAAATAATAAAAG
1 AAAATAATAAATAATAAAAG
*
105807131 AAAAAAATAAATAA
1 AAAATAATAAATAA
105807145 AAATAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 7 0.23
20 24 0.77
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (20 bp):
AAAATAATAAATAATAAAAG
Found at i:105809408 original size:49 final size:50
Alignment explanation
Indices: 105809351--105809448 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 50
105809341 TTTAATATGT
* *
105809351 TTAGTTTAATTAATTCAGTTGTTTT-AATTTTCCTTAATTGCTTAAATAC
1 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATAC
* *
105809400 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCTTTAGTTGCTTAAATA
1 TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATA
105809449 ATTCCGGCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 23 0.52
50 21 0.48
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (50 bp):
TTAGTTTAATTAATTAAATTGTTTTGAATTTTCCTTAATTGCTTAAATAC
Found at i:105811909 original size:12 final size:12
Alignment explanation
Indices: 105811892--105811923 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
105811882 CGACCCACCC
105811892 ATATTAATTTTT
1 ATATTAATTTTT
105811904 ATATT-ATTTTT
1 ATATTAATTTTT
105811915 ATA-TAATTT
1 ATATTAATTT
105811924 AATAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:105812080 original size:30 final size:30
Alignment explanation
Indices: 105812044--105812106 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
105812034 ACTTAACAAT
105812044 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
105812074 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
105812104 CAA
1 CAA
105812107 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:105813041 original size:20 final size:21
Alignment explanation
Indices: 105812991--105813031 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
105812981 GGGTCAACAT
*
105812991 ACCCATGTGAAGAAGGCACAC
1 ACCCGTGTGAAGAAGGCACAC
105813012 ACCCGTGTGAAGAA-GCACAC
1 ACCCGTGTGAAGAAGGCACAC
105813032 TCTCCTGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.37, C:0.29, G:0.24, T:0.10
Consensus pattern (21 bp):
ACCCGTGTGAAGAAGGCACAC
Found at i:105830049 original size:43 final size:43
Alignment explanation
Indices: 105829984--105830107 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
105829974 AGCTCGCACA
* * * *
105829984 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATAT-TG
1 ATGCCATGTCCCAGAAATGGTCTTACATGTAATCACATATACG
* * * *
105830026 ATGCCACTGTCCCAGAAAAGGTCTTACACGAAATCATA-ATACG
1 ATGCCA-TGTCCCAGAAATGGTCTTACATGTAATCACATATACG
*
105830069 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCC-ATGTCCCAGAAATGGTCTTACATGTAATCACAT
105830108 CTCGATAACC
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
42 8 0.12
43 56 0.86
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCATGTCCCAGAAATGGTCTTACATGTAATCACATATACG
Found at i:105831865 original size:21 final size:20
Alignment explanation
Indices: 105831839--105831881 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
105831829 GGAATTTGAA
105831839 TTGAGT-AGTTGAGGGAGTGGT
1 TTGAGTGAGTTGA-GGAG-GGT
*
105831860 TTGAGTGATTTGAGGAGGGT
1 TTGAGTGAGTTGAGGAGGGT
105831880 TT
1 TT
105831882 TTAGGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (20 bp):
TTGAGTGAGTTGAGGAGGGT
Found at i:105833389 original size:27 final size:27
Alignment explanation
Indices: 105833351--105833559 Score: 276
Period size: 27 Copynumber: 7.7 Consensus size: 27
105833341 CGTACCTGAA
*
105833351 CCCTCATGTGATAAAATGACGATTTTT
1 CCCTCATGTGATAAAATGACGATTTTG
*
105833378 CCCTCATGTGATAAAATTACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
*
105833405 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* *
105833432 CCCTCATATGATAAAATGATGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* *
105833459 CCCTCATGTGGTAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * *
105833486 CCATTATGTGGTAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACGATTTTG
* * *
105833513 CCCTTATGTGATAAAATGAGGATTTTA
1 CCCTCATGTGATAAAATGACGATTTTG
*
105833540 CCCTCATAG-GGTAAAATGAC
1 CCCTCAT-GTGATAAAATGAC
105833560 CGAAATACCC
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 161 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACGATTTTG
Found at i:105833568 original size:27 final size:27
Alignment explanation
Indices: 105833546--105833613 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
105833536 TTTACCCTCA
*
105833546 TAGGGTAAAATGACCGAAATACCCCTG
1 TAGGGTAAAATGACCGAAATACCCCGG
* * *
105833573 TAGGGTAGAATGACTGTAATACCCCGG
1 TAGGGTAAAATGACCGAAATACCCCGG
*
105833600 TAAGGTAAAATGAC
1 TAGGGTAAAATGAC
105833614 AGATTTGTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGACCGAAATACCCCGG
Found at i:105835053 original size:29 final size:29
Alignment explanation
Indices: 105834986--105835110 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
105834976 AAGTCTACAT
*
105834986 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
105835014 TCATTCATATGGCCCACTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
105835043 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
**
105835072 ACATTCATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
105835101 ACATTCATAT
1 ACATTCATAT
105835111 ACATGCTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 22 0.25
29 67 0.75
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:105839556 original size:12 final size:12
Alignment explanation
Indices: 105839539--105839572 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
105839529 AAAACCTTAG
105839539 TTTTTCCTTTTC
1 TTTTTCCTTTTC
105839551 TTTTT-CTTTTC
1 TTTTTCCTTTTC
105839562 TTCTTTCCTTT
1 TT-TTTCCTTT
105839573 CTCCCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 8 0.40
13 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCCTTTTC
Found at i:105846221 original size:12 final size:12
Alignment explanation
Indices: 105846200--105846239 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
105846190 AACTTTAGAA
*
105846200 CTTTTGTTTTTC
1 CTTTTCTTTTTC
105846212 CTTTTCTTTTT-
1 CTTTTCTTTTTC
105846223 CTTTTCTTCTTTC
1 CTTTTCTT-TTTC
105846236 CTTT
1 CTTT
105846240 CTCCCTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 8 0.32
12 13 0.52
13 4 0.16
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (12 bp):
CTTTTCTTTTTC
Found at i:105846312 original size:2 final size:2
Alignment explanation
Indices: 105846305--105846338 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
105846295 ACTTTATTTC
105846305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105846339 TAGTTAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105846358 original size:3 final size:3
Alignment explanation
Indices: 105846343--105846391 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
105846333 ATATATTAGT
* *
105846343 TAA TAA TAT TAA TAA TAA TACA TTA TAA TAA TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
105846387 TAA TA
1 TAA TA
105846392 TTTAATTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:105846373 original size:16 final size:16
Alignment explanation
Indices: 105846347--105846391 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
105846337 ATTAGTTAAT
105846347 AATATTAATAATAATAC
1 AATA-TAATAATAATAC
* *
105846364 ATTATAATAATAATAT
1 AATATAATAATAATAC
105846380 AATATAATAATA
1 AATATAATAATA
105846392 TTTAATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAATAATAATAC
Found at i:105846389 original size:13 final size:14
Alignment explanation
Indices: 105846343--105846392 Score: 61
Period size: 13 Copynumber: 3.6 Consensus size: 14
105846333 ATATATTAGT
105846343 TAATAATATTAATAA
1 TAATAATA-TAATAA
105846358 TAATACAT-T-ATAA
1 TAATA-ATATAATAA
105846371 TAATAATATAAT-A
1 TAATAATATAATAA
105846384 TAATAATAT
1 TAATAATAT
105846393 TTAATTCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 20 0.62
14 3 0.09
15 5 0.16
16 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATAATATAATAA
Found at i:105846559 original size:24 final size:23
Alignment explanation
Indices: 105846509--105846561 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
105846499 TTGTCTTCAT
105846509 TTTAATAATTTAATATAAAACTA
1 TTTAATAATTTAATATAAAACTA
*
105846532 --TAATAATTATAATA-AATATCTA
1 TTTAATAATT-TAATATAA-AACTA
105846554 TTTAATAA
1 TTTAATAA
105846562 CAAATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
24 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAATTTAATATAAAACTA
Found at i:105847020 original size:10 final size:11
Alignment explanation
Indices: 105847004--105847045 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
105846994 ATCCTTATAC
105847004 CTAATTAACCT
1 CTAATTAACCT
*
105847015 -TAATTAAACT
1 CTAATTAACCT
*
105847025 CTAATTAACCA
1 CTAATTAACCT
105847036 CTAAATTAAC
1 CT-AATTAAC
105847046 TTCGTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 9 0.35
11 10 0.38
12 7 0.27
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (11 bp):
CTAATTAACCT
Found at i:105848339 original size:43 final size:43
Alignment explanation
Indices: 105848280--105848446 Score: 210
Period size: 43 Copynumber: 3.9 Consensus size: 43
105848270 TCACATATCG
* * * *
105848280 ATGCCATTGTCCCAGACAGGGTCTTACACGAAATC-GAATAACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAAT-ACA
* *
105848323 ATGCCAATGTCCCAGACAGGGTATTACGCGTAATCACAATACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACA
* *
105848366 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACA
* * * *
105848409 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACA
105848447 TCTAGATAAC
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
43 108 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCACAATACA
Found at i:105852233 original size:33 final size:33
Alignment explanation
Indices: 105852191--105852272 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
105852181 CATCAGTCAT
*
105852191 TTTGGGCCTGAGCCCAATTCAATAATGATGGCC
1 TTTGGGCCTGAGCCCAATTCAATAACGATGGCC
*
105852224 TTTGGGCCTGAGCCCAATTCAATAACGATGGTC
1 TTTGGGCCTGAGCCCAATTCAATAACGATGGCC
*
105852257 TTTGGGCCTTAGCCCA
1 TTTGGGCCTGAGCCCA
105852273 TATTAGCCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (33 bp):
TTTGGGCCTGAGCCCAATTCAATAACGATGGCC
Found at i:105853048 original size:28 final size:29
Alignment explanation
Indices: 105853005--105853073 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
105852995 TACATACATG
* *
105853005 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCGCATT
105853033 CATATGGCCCATTAGGCCCAAATCGCATT
1 CATATGGCCCATTAGGCCCAAATCGCATT
*
105853062 CATATGTCCCAT
1 CATATGGCCCAT
105853074 CCGTCTCGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCGCATT
Found at i:105853963 original size:38 final size:35
Alignment explanation
Indices: 105853904--105854021 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
105853894 TCAATCATGC
*
105853904 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
105853943 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
105853974 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
105854005 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
105854022 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:105853965 original size:31 final size:31
Alignment explanation
Indices: 105853927--105854021 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
105853917 CCTTTTCATA
*
105853927 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
105853958 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
105853989 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
105854020 TT
1 TT
105854022 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:105854197 original size:24 final size:24
Alignment explanation
Indices: 105854146--105854312 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
105854136 GCTTTATCAT
* *
105854146 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
105854171 ATAACTGGGGCAGAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
105854195 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
105854218 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
105854242 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
105854266 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
105854290 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
105854313 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:105854246 original size:71 final size:71
Alignment explanation
Indices: 105854145--105854312 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
105854135 TGCTTTATCA
*
105854145 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAGAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAGAAGCCCTTTCAATAACTGGGGCATA
105854209 AGCCCTTT
64 AGCCCTTT
* * **
105854217 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAGAAGCCCTTTCAATAACTGGGGCATAAG
105854282 CCCTTT
66 CCCTTT
105854288 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
105854313 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAGAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:105854388 original size:20 final size:20
Alignment explanation
Indices: 105854363--105854442 Score: 142
Period size: 20 Copynumber: 4.0 Consensus size: 20
105854353 TATGATTATC
105854363 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
105854383 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
*
105854403 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
105854423 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
105854443 CCATATTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:105854393 original size:11 final size:11
Alignment explanation
Indices: 105854363--105854437 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
105854353 TATGATTATC
105854363 TCATGTGCATA
1 TCATGTGCATA
*
105854374 TCA--TACATA
1 TCATGTGCATA
105854383 TCATGTGCATA
1 TCATGTGCATA
* *
105854394 TCA--TACATT
1 TCATGTGCATA
105854403 TCATGTGCATA
1 TCATGTGCATA
* *
105854414 TCA--TACATT
1 TCATGTGCATA
105854423 TCATGTGCATA
1 TCATGTGCATA
105854434 TCAT
1 TCAT
105854438 ACATACCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:105856350 original size:16 final size:16
Alignment explanation
Indices: 105856325--105856377 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
105856315 ATAGCCAGAC
* *
105856325 TTTCGGCTTTTTGGCA
1 TTTCGACTTTTCGGCA
*
105856341 TTTCGACTTTTCGGTA
1 TTTCGACTTTTCGGCA
* *
105856357 TATCGACATTTCGGCA
1 TTTCGACTTTTCGGCA
105856373 TTTCG
1 TTTCG
105856378 GGATTTGTCG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:105859890 original size:29 final size:28
Alignment explanation
Indices: 105859856--105859923 Score: 118
Period size: 29 Copynumber: 2.4 Consensus size: 28
105859846 CCAATCTCAA
105859856 TCATATGGCCAATTAGGCCCAAATCACAT
1 TCATATGGCC-ATTAGGCCCAAATCACAT
105859885 TCATATGGCTCATTAGGCCCAAATCACAT
1 TCATATGGC-CATTAGGCCCAAATCACAT
105859914 TCATATGGCC
1 TCATATGGCC
105859924 CATCCAACCG
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 1 0.03
29 36 0.95
30 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
TCATATGGCCATTAGGCCCAAATCACAT
Found at i:105860185 original size:16 final size:16
Alignment explanation
Indices: 105860166--105860203 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
105860156 AGACTTTCAA
*
105860166 CTTTTTAGCATTTCGG
1 CTTTTCAGCATTTCGG
*
105860182 CTTTTCGGCATTTCGG
1 CTTTTCAGCATTTCGG
105860198 CTTTTC
1 CTTTTC
105860204 GACATTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.24, G:0.18, T:0.50
Consensus pattern (16 bp):
CTTTTCAGCATTTCGG
Found at i:105860204 original size:16 final size:16
Alignment explanation
Indices: 105860173--105860211 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
105860163 CAACTTTTTA
105860173 GCATTTCGGCTTTTCG
1 GCATTTCGGCTTTTCG
105860189 GCATTTCGGCTTTTCG
1 GCATTTCGGCTTTTCG
*
105860205 ACATTTC
1 GCATTTC
105860212 AGGATTTGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.44
Consensus pattern (16 bp):
GCATTTCGGCTTTTCG
Found at i:105860211 original size:8 final size:8
Alignment explanation
Indices: 105860173--105860211 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
105860163 CAACTTTTTA
105860173 GCATTTCG
1 GCATTTCG
*
105860181 GCTTTTCG
1 GCATTTCG
105860189 GCATTTCG
1 GCATTTCG
*
105860197 GCTTTTCG
1 GCATTTCG
*
105860205 ACATTTC
1 GCATTTC
105860212 AGGATTTGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.44
Consensus pattern (8 bp):
GCATTTCG
Found at i:105868256 original size:48 final size:48
Alignment explanation
Indices: 105868177--105868350 Score: 251
Period size: 48 Copynumber: 3.6 Consensus size: 48
105868167 TGATCCCGTA
* * * *
105868177 TAAGACCATGTTTGGGATATGACATCGGCATCGTTATATGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* *
105868225 TAAGACCATGTCTGGGACATGGCATCAGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
* * **
105868273 TAAGACCATGTTTAGGACATGGCATCGACATCGTTATGTGAGCCAACG
1 TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
105868321 TAAGACCATGTTTGGGACAT-GCATCGGCAT
1 TAAGACCATGTTTGGGACATGGCATCGGCAT
105868351 GAGGCATCAT
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 9 0.08
48 103 0.92
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
Found at i:105870094 original size:12 final size:13
Alignment explanation
Indices: 105870077--105870114 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
105870067 TTCCTGGAAT
105870077 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
105870089 ATTAAGAACACATA
1 ATTAAGAACA-AGA
105870103 ATTAAGAACAAG
1 ATTAAGAACAAG
105870115 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:105873979 original size:43 final size:43
Alignment explanation
Indices: 105873931--105874079 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
105873921 AGACATCGTG
105873931 TAAGA-CAGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCA-TGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
** * ** * * *
105873974 TAAGACCATGTCTGGGACATTGGCATCGTATCT-ATTTTTTCTTG
1 TAAGACCATGTCTGGGACACAGGCCTCG-AT-TGAGATTTACGTA
*
105874018 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
*
105874061 TAAAACCATGTCTGGGACA
1 TAAGACCATGTCTGGGACA
105874080 TCGACATCGT
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 47 0.57
44 34 0.41
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
Found at i:105874075 original size:87 final size:87
Alignment explanation
Indices: 105873929--105874091 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
105873919 TGAGACATCG
*
105873929 TGTAAGACAGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACAT
1 TGTAAGACAGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTCTGGGACAT
* *
105873994 TGGCATCGTATCTATTTTTTCT
66 CGACATCGTATCTATTTTTTCT
*
105874016 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTCTGGGACAT
1 TGTAAGACAGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTCTGGGACAT
105874081 CGACATCGTAT
66 CGACATCGTAT
105874092 TTGATTTCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (87 bp):
TGTAAGACAGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTCTGGGACAT
CGACATCGTATCTATTTTTTCT
Found at i:105874098 original size:43 final size:44
Alignment explanation
Indices: 105873931--105874098 Score: 129
Period size: 43 Copynumber: 3.9 Consensus size: 44
105873921 AGACATCGTG
*
105873931 TAAGA-CAGTGTCTGGGACA-CAGGCCTCG-ATTGA-GATTTACGTA
1 TAAGACCA-TGTCTGGGACATC-GGCATCGTATT-ATGATTTACGTA
* * * * *
105873974 TAAGACCATGTCTGGGACATTGGCATCGTATCTAT-TTTTTCTTG
1 TAAGACCATGTCTGGGACATCGGCATCGTAT-TATGATTTACGTA
* *
105874018 TAAGACCGTGTCTGGGACA-CAGGCCTCG-ATTGA-GATTTACGTA
1 TAAGACCATGTCTGGGACATC-GGCATCGTATT-ATGATTTACGTA
* *
105874061 TAAAACCATGTCTGGGACATCGACATCGTATT-TGATTT
1 TAAGACCATGTCTGGGACATCGGCATCGTATTATGATTT
105874099 CATGTAAGAC
Statistics
Matches: 97, Mismatches: 17, Indels: 22
0.71 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 57 0.59
44 38 0.39
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (44 bp):
TAAGACCATGTCTGGGACATCGGCATCGTATTATGATTTACGTA
Found at i:105874137 original size:87 final size:87
Alignment explanation
Indices: 105873945--105874132 Score: 245
Period size: 87 Copynumber: 2.2 Consensus size: 87
105873935 ACAGTGTCTG
* * * * *
105873945 GGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACATTGGCATCGTATCTATT
1 GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTCTGGGACATCGACATCGTATCTATG
* * * * *
105874010 TTTTCTTGTAAGACCGTGTCTG
66 ATTTCATGTAAGACCCTATCTA
*
105874032 GGACACAGGCCTCGATTGAGATTTACGTATAAAACCATGTCTGGGACATCGACATCGTAT-T-TG
1 GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTCTGGGACATCGACATCGTATCTATG
105874095 ATTTCATGTAAGACCCTATCTA
66 ATTTCATGTAAGACCCTATCTA
* *
105874117 GGATAGAGGCATCGAT
1 GGACACAGGCATCGAT
105874133 ATTGAATTAC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 31 0.35
86 1 0.01
87 57 0.64
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (87 bp):
GGACACAGGCATCGATTGAGATTTACGTATAAAACCATGTCTGGGACATCGACATCGTATCTATG
ATTTCATGTAAGACCCTATCTA
Found at i:105884515 original size:5 final size:5
Alignment explanation
Indices: 105884505--105884531 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
105884495 CCTCCTCCAC
105884505 TTGCA TTGCA TTGCA TTGCA TTGCA TT
1 TTGCA TTGCA TTGCA TTGCA TTGCA TT
105884532 ACTGGGTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:105886282 original size:12 final size:13
Alignment explanation
Indices: 105886265--105886302 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
105886255 TTCCTGGTAT
105886265 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
105886277 ATTAAGAACACATA
1 ATTAAGAACA-AGA
105886291 ATTAAGAACAAG
1 ATTAAGAACAAG
105886303 TCAATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:105887215 original size:25 final size:24
Alignment explanation
Indices: 105887171--105887233 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
105887161 AAATAAATAA
* *
105887171 ATTATTTGATAACAAGTGTA-CATAT
1 ATTATTT-ATTACAAATGTACCA-AT
105887196 ATCTATTTATTACAAATGTACCAAT
1 AT-TATTTATTACAAATGTACCAAT
105887221 ATT-TTTATTACAA
1 ATTATTTATTACAA
105887234 TTGTCATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 10 0.29
24 1 0.03
25 16 0.47
26 7 0.21
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (24 bp):
ATTATTTATTACAAATGTACCAAT
Found at i:105888968 original size:8 final size:8
Alignment explanation
Indices: 105888955--105888986 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
105888945 CTAGATCGGT
105888955 AAAAGCCG
1 AAAAGCCG
105888963 AAAAGCCG
1 AAAAGCCG
*
105888971 AAATGCCG
1 AAAAGCCG
105888979 AAAAGCCG
1 AAAAGCCG
105888987 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:105889273 original size:28 final size:28
Alignment explanation
Indices: 105889233--105889325 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
105889223 ATGTACTATT
105889233 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
105889261 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
* * * *
105889289 ATACCCCTATGTATGTAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATA
105889317 ATACCCCTA
1 ATACCCCTA
105889326 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:105889488 original size:27 final size:27
Alignment explanation
Indices: 105889430--105889519 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
105889420 AGGAAGCGTC
105889430 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
105889458 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
105889485 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
105889514 CTGGTG
1 CTGGTG
105889520 ACTCCATCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:105889538 original size:55 final size:55
Alignment explanation
Indices: 105889430--105889544 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 55
105889420 AGGAAGCGTC
* *
105889430 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCT-CCACATATATCTGTAT
*
105889485 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCCAT-CACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGAC-CC-TCCACATATATCTGTAT
105889541 CTGG
1 CTGG
105889545 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 18 0.35
57 2 0.04
58 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTCCACATATATCTGTAT
Found at i:105891244 original size:77 final size:80
Alignment explanation
Indices: 105891156--105891304 Score: 205
Period size: 77 Copynumber: 1.9 Consensus size: 80
105891146 ATCACGATTT
* * *
105891156 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTTGCA-C-GAA-TGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAACTTCCAGCAGAATTGCCTTCGGGGCTTAGCC
105891218 CGGATATAGCTACTA
66 CGGATATAGCTACTA
* * * * *
105891233 GCACAATTGCCTTCGGGTCTTAACCCGGATTAAATTTCCAGCATAATTGTCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAACTTCCAGCAGAATTGCCTTCGGGGCTTAGCC
105891298 CGGATAT
66 CGGATAT
105891305 CATTCAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
77 35 0.57
78 1 0.02
79 2 0.03
80 23 0.38
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAACTTCCAGCAGAATTGCCTTCGGGGCTTAGCC
CGGATATAGCTACTA
Found at i:105891260 original size:40 final size:38
Alignment explanation
Indices: 105891124--105891262 Score: 147
Period size: 40 Copynumber: 3.6 Consensus size: 38
105891114 CCGCACCAAG
* * * *
105891124 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACAACTTGCAC-AAT
*
105891164 GCCTTCGGGTCTTAGCCCGGATA-A-AACTTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATACAACTTGCAC-AAT
* * *
105891201 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CAACTTGCACAA-T
105891241 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAACCCGGAT
105891263 TAAATTTCCA
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
37 33 0.38
38 2 0.02
39 2 0.02
40 49 0.57
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGTCTTAACCCGGATATACAACTTGCACAAT
Found at i:105891281 original size:40 final size:40
Alignment explanation
Indices: 105891156--105891302 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 40
105891146 ATCACGATTT
* *
105891156 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTT---
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTAAACTTCCA
* * *
105891193 GCACGAA-TGCCTTCGGGTCTTAGCCCGGA-TATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATTA-AACTTCCA
* *
105891233 GCACAATTGCCTTCGGGTCTTAACCCGGATTAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATTAAACTTCCA
* * *
105891273 GCATAATTGTCTTCGGGGCTTAGCCCGGAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGAT
105891303 ATCATTCAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
36 1 0.01
37 29 0.32
38 2 0.02
39 2 0.02
40 55 0.60
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATTAAACTTCCA
Found at i:105898538 original size:40 final size:40
Alignment explanation
Indices: 105898464--105898606 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 40
105898454 CCGCACCAAG
* * * * * *
105898464 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
105898504 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * * *
105898544 GCCTTCGGGTCTAAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
105898584 GCCTTCGGGTCTTAACCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
105898607 AATTTCAGCA
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:105900658 original size:18 final size:18
Alignment explanation
Indices: 105900619--105900659 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
105900609 TAATAAGGCC
* *
105900619 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
105900637 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
105900655 TTTTA
1 TTTTA
105900660 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:105904671 original size:23 final size:24
Alignment explanation
Indices: 105904631--105904677 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
105904621 TGAAATACAT
105904631 GAAAATGATGATACATGATATATG
1 GAAAATGATGATACATGATATATG
105904655 GAAATATGA-GATA-ATGATATATG
1 GAAA-ATGATGATACATGATATATG
105904678 AACATGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.45
24 8 0.36
25 4 0.18
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.30
Consensus pattern (24 bp):
GAAAATGATGATACATGATATATG
Found at i:105904925 original size:35 final size:35
Alignment explanation
Indices: 105904879--105904948 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
105904869 ACATGGAAAG
105904879 TATATGTACGTGGAAATCTAATTATTATTGAGCCC
1 TATATGTACGTGGAAATCTAATTATTATTGAGCCC
105904914 TATATGTACGTGGAAATCTAATTATTATTGAGCCC
1 TATATGTACGTGGAAATCTAATTATTATTGAGCCC
105904949 ATACATGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (35 bp):
TATATGTACGTGGAAATCTAATTATTATTGAGCCC
Found at i:105905285 original size:2 final size:2
Alignment explanation
Indices: 105905278--105905310 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
105905268 CAATATTGGC
105905278 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105905311 CTTTGGTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105906363 original size:30 final size:30
Alignment explanation
Indices: 105906329--105906388 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
105906319 TTCCTGAGCC
105906329 TAGGGGCAAAAATGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
105906359 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
105906389 CATATTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:105911952 original size:3 final size:3
Alignment explanation
Indices: 105911939--105911975 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
105911929 TATTAATGTG
105911939 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
105911976 GGGTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Done.