Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 364 of 444
Found at i:105912193 original size:16 final size:16
Alignment explanation
Indices: 105912166--105912206 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
105912156 ATAAATAAAC
*
105912166 AAATAAATAAATGACTA
1 AAATAAATAAATG-CAA
105912183 AAATAAA-AAATGCAA
1 AAATAAATAAATGCAA
105912198 AAATAAATA
1 AAATAAATA
105912207 GGGACCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 9 0.41
16 6 0.27
17 7 0.32
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.20
Consensus pattern (16 bp):
AAATAAATAAATGCAA
Found at i:105920469 original size:15 final size:16
Alignment explanation
Indices: 105920441--105920475 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
105920431 TCAAAAAATA
*
105920441 TTTTATCACTTTTTCT
1 TTTTATCACTTTTTAT
105920457 TTTTATCAC-TTTTAT
1 TTTTATCACTTTTTAT
105920472 TTTT
1 TTTT
105920476 TGCTTTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTATCACTTTTTAT
Found at i:105923194 original size:40 final size:40
Alignment explanation
Indices: 105923120--105923211 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
105923110 GCTAGAGTTC
105923120 AGCATTAGCGGCGTTTCTACACAAACGCCACTATAGATA-
1 AGCATTAGCGGCGTTTCTACACAAACGCCACTATAGATAG
* * * * *
105923159 AGACATTAGCGGCGTTTTTTCA-AAAGTGCCGCTATAGATCG
1 AG-CATTAGCGGCGTTTCTACACAAA-CGCCACTATAGATAG
105923200 AGCATTAGCGGC
1 AGCATTAGCGGC
105923212 ACTTTTGCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
39 5 0.11
40 38 0.84
41 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCATTAGCGGCGTTTCTACACAAACGCCACTATAGATAG
Found at i:105923332 original size:115 final size:115
Alignment explanation
Indices: 105923203--105923578 Score: 592
Period size: 115 Copynumber: 3.3 Consensus size: 115
105923193 TAGATCGAGC
* *
105923203 ATTAGCGGCACTTTTGCAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGA
1 ATTAGCGGCGCTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGA
*
105923268 CCCTTAGTTTCATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
66 CCCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
** *
105923318 ATTAGCGGCGCTTTTACAAAAAACGCCATTAATAATTTCAGCAAGACGTAGTCGTTTCGTTTCGA
1 ATTAGCGGCGCTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGA
*
105923383 CCCTTAGTTTTATTAGCGGCATTTCTAAAAAAACGCCACTAAAGGTTGAGT
66 CCCTTAGTTTTATTAGCGGCGTTTCT-AAAAAACGCCACTAAAGGTTGAGT
* * * *
105923434 ATTAGCGGCGATTTTACAAAAAATGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTTGG
1 ATTAGCGGCGCTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGA
* *
105923499 CCCTTAGTTTTATTAGCGGTGTTTCTAAAAAATGCCACTAAAGGTTGAGT
66 CCCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
** *
105923549 ATTAGCGGCG-TTTTTTAACAAACGCCGCTA
1 ATTAGCGGCGCTTTTACAAAAAACGCCGCTA
105923579 TAGGTTGACC
Statistics
Matches: 239, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
114 16 0.07
115 117 0.49
116 106 0.44
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (115 bp):
ATTAGCGGCGCTTTTACAAAAAACGCCGCTAATAATTTCAGCAAGACGCAGTCGTTTCGTTTCGA
CCCTTAGTTTTATTAGCGGCGTTTCTAAAAAACGCCACTAAAGGTTGAGT
Found at i:105923784 original size:28 final size:29
Alignment explanation
Indices: 105923739--105923793 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
105923729 CAAAAAGTAT
*
105923739 TTTATCTATATATTTATT-ATTTAAATGG
1 TTTATCTATATATTTATTGATTAAAATGG
*
105923767 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATCTATATATT-TATTGATTAAAAT
105923794 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTATCTATATATTTATTGATTAAAATGG
Found at i:105924158 original size:21 final size:21
Alignment explanation
Indices: 105924117--105924159 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
105924107 GGGATTATGG
* *
105924117 GTTTAGGGGTTGTGGTTTAAA
1 GTTTAGGGATTGTGGTGTAAA
105924138 GTTTAGGGATTAGTGG-GTAAA
1 GTTTAGGGATT-GTGGTGTAAA
105924159 G
1 G
105924160 GTTAAGGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (21 bp):
GTTTAGGGATTGTGGTGTAAA
Found at i:105924319 original size:14 final size:15
Alignment explanation
Indices: 105924302--105924334 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
105924292 TTTGGTTTAT
105924302 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
105924316 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
105924331 GGTT
1 GGTT
105924335 AGTGGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:105924343 original size:21 final size:21
Alignment explanation
Indices: 105924276--105924341 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
105924266 GAGTTAATGT
*
105924276 TTTAAGGTTTAGGGACTT-TGG
1 TTTAAGGTTTAGGG-GTTGTGG
* * *
105924297 TTTATGGTTTAAGGGTTGGGG
1 TTTAAGGTTTAGGGGTTGTGG
105924318 TTTAAGGTTTAGGGGTTAGTGG
1 TTTAAGGTTTAGGGGTT-GTGG
105924340 TT
1 TT
105924342 AATCATGGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.81
22 5 0.14
ACGTcount: A:0.17, C:0.02, G:0.38, T:0.44
Consensus pattern (21 bp):
TTTAAGGTTTAGGGGTTGTGG
Found at i:105924364 original size:15 final size:16
Alignment explanation
Indices: 105924344--105924382 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
105924334 TAGTGGTTAA
105924344 TCATGGTTTA-AGGTT
1 TCATGGTTTAGAGGTT
*
105924359 TCATGGTTTAGGGGTT
1 TCATGGTTTAGAGGTT
105924375 T-ATGGTTT
1 TCATGGTTT
105924383 GGGGTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.15, C:0.05, G:0.31, T:0.49
Consensus pattern (16 bp):
TCATGGTTTAGAGGTT
Found at i:105924693 original size:26 final size:27
Alignment explanation
Indices: 105924627--105924694 Score: 113
Period size: 26 Copynumber: 2.6 Consensus size: 27
105924617 TCAAAATTTA
105924627 AAGATTTCAAA-TTTAGAATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
105924653 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
*
105924679 AATATTTCAAATTTTA
1 AAGATTTCAAATTTTA
105924695 TCTAACTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 36 0.90
27 4 0.10
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAATTTTC
Found at i:105924839 original size:18 final size:17
Alignment explanation
Indices: 105924808--105924842 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
105924798 TAGTTGATTG
*
105924808 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
105924825 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
105924843 AATAAATCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:105926777 original size:24 final size:24
Alignment explanation
Indices: 105926750--105926836 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
105926740 ATGTTAACCT
* *
105926750 GCACACATAGTTCCATACAAATCC
1 GCACACATAGTGCCATACAAATTC
105926774 GCACACATAGTGCCATACAAATTC
1 GCACACATAGTGCCATACAAATTC
* *
105926798 ACACACATAGTGCCATTCAAATTC
1 GCACACATAGTGCCATACAAATTC
105926822 GCACACATAGTGCCA
1 GCACACATAGTGCCA
105926837 AAATCATTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.37, C:0.31, G:0.11, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATACAAATTC
Found at i:105928040 original size:17 final size:17
Alignment explanation
Indices: 105928018--105928051 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
105928008 CCCCACTTAA
*
105928018 TATATTATAACTTATTT
1 TATATTATAACATATTT
105928035 TATATTATAACATATTT
1 TATATTATAACATATTT
105928052 CATGTAGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:105928878 original size:64 final size:64
Alignment explanation
Indices: 105928805--105929015 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
105928795 CTGGGCCAGA
*
105928805 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
105928869 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
105928931 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
105928942 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
105929006 GCCCATTTCA
1 GCCCATTTCA
105929016 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:105929017 original size:137 final size:137
Alignment explanation
Indices: 105928771--105929057 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
105928761 TATTGGGCCT
** *
105928771 AAGCCCATTCAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
105928836 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
105928901 CATATGC
131 CATATGC
105928908 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
105928973 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
105929038 CATATGC
131 CATATGC
105929045 AAGCCCATTTGGG
1 AAGCCCATTTGGG
105929058 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:105930998 original size:26 final size:26
Alignment explanation
Indices: 105930836--105930997 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
105930826 CATGAAATTC
*
105930836 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
105930862 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
105930888 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105930914 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
105930940 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
105930966 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105930992 TTATCA
1 TTATCA
105930998 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:105938042 original size:40 final size:40
Alignment explanation
Indices: 105937963--105938119 Score: 142
Period size: 40 Copynumber: 4.0 Consensus size: 40
105937953 TTCGAATGAT
* * * *
105937963 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
105938003 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
105938043 ATCC-GACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
105938082 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
105938120 GTAACCGGGC
Statistics
Matches: 94, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
39 34 0.36
40 54 0.57
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:105938056 original size:39 final size:39
Alignment explanation
Indices: 105937998--105938086 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
105937988 GTGCTAAGTG
* * * *
105937998 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCC-GACTAAGATCCGAAGGCATACGAGCAAGCT
* *
105938038 ACTAAATCCGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGACTAAGATCCGAAGGCATACGAGCAAGCT
105938077 ACTAAATCCG
1 ACTAAATCCG
105938087 GGTTGAGTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.79
40 9 0.21
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (39 bp):
ACTAAATCCGACTAAGATCCGAAGGCATACGAGCAAGCT
Found at i:105946099 original size:40 final size:40
Alignment explanation
Indices: 105946020--105946177 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
105946010 TTCGAATGAT
* * * *
105946020 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
105946060 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
105946100 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
105946140 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
105946178 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:105946198 original size:80 final size:80
Alignment explanation
Indices: 105946020--105946207 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
105946010 TTCGAATGAT
* *
105946020 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
105946085 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
105946100 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
105946161 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
105946181 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
105946208 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:105948937 original size:24 final size:24
Alignment explanation
Indices: 105948925--105949016 Score: 148
Period size: 24 Copynumber: 3.8 Consensus size: 24
105948915 TTGACATTCC
105948925 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
*
105948949 AATCCCCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
105948973 AATTCGCACACATAGTGCCATTCA
1 AATCCGCACACATAGTGCCATACA
*
105948997 AATTCGCACACATAGTGCCA
1 AATCCGCACACATAGTGCCA
105949017 AAATCATTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.36, C:0.33, G:0.12, T:0.20
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:105948986 original size:72 final size:72
Alignment explanation
Indices: 105948883--105949016 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 72
105948873 TGTTAACCCG
* ** * * *
105948883 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAATCCGCACACATAGTGCCATAC
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
105948948 AAATCCC
66 AAATCCC
* * *
105948955 CACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCACACATAGTGCCA
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCA
105949017 AAATCATTTC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 53 1.00
ACGTcount: A:0.35, C:0.31, G:0.11, T:0.23
Consensus pattern (72 bp):
CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
AAATCCC
Found at i:105949014 original size:48 final size:48
Alignment explanation
Indices: 105948880--105949016 Score: 152
Period size: 48 Copynumber: 2.9 Consensus size: 48
105948870 CCATGTTAAC
* * * * *
105948880 CCGCACACATAGTGCC-TT-AGTAATTCACATACATATTGACATTCCAAT
1 CCGCACACATAGTGCCATTCA--AATTCACACACATAGTGCCATACAAAT
* * *
105948928 CCGCACACATAGTGCCATACAAATCCCCACACATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATTCAAATTCACACACATAGTGCCATACAAAT
* *
105948976 TCGCACACATAGTGCCATTCAAATTCGCACACATAGTGCCA
1 CCGCACACATAGTGCCATTCAAATTCACACACATAGTGCCA
105949017 AAATCATTTC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
48 73 0.97
49 1 0.01
50 1 0.01
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.23
Consensus pattern (48 bp):
CCGCACACATAGTGCCATTCAAATTCACACACATAGTGCCATACAAAT
Found at i:105950050 original size:41 final size:41
Alignment explanation
Indices: 105949993--105950078 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
105949983 AAAAAATTCA
105949993 CATATGGGTTATAATAAGAGCTTGACTACTAACTCAATTTT
1 CATATGGGTTATAATAAGAGCTTGACTACTAACTCAATTTT
105950034 CATATGGGTTATAATAAGAGCTTGACTACTAACTCAATTTT
1 CATATGGGTTATAATAAGAGCTTGACTACTAACTCAATTTT
105950075 CATA
1 CATA
105950079 AAATTTAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (41 bp):
CATATGGGTTATAATAAGAGCTTGACTACTAACTCAATTTT
Found at i:105950254 original size:17 final size:17
Alignment explanation
Indices: 105950232--105950265 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
105950222 CCCCACTTAA
*
105950232 TATATTATAACTTATTT
1 TATATTATAACATATTT
105950249 TATATTATAACATATTT
1 TATATTATAACATATTT
105950266 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:105953477 original size:64 final size:64
Alignment explanation
Indices: 105953376--105953633 Score: 480
Period size: 64 Copynumber: 4.0 Consensus size: 64
105953366 TTTTTGTAAC
105953376 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
105953440 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
* *
105953504 TTCTATCACGATTATTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
* *
105953568 TTTTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATAT
1 TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
105953632 TT
1 TT
105953634 AATAAAATAT
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 188 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (64 bp):
TTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAAATAT
Found at i:105953750 original size:24 final size:24
Alignment explanation
Indices: 105953681--105953751 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
105953671 GTTATTATTG
* *
105953681 AAATATTCTCGTCCGTTTTATAAC
1 AAATATTATCGTCCGTTTTATCAC
*
105953705 AAATATTATTGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
* *
105953729 AAATATTGTCGTTCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
105953752 TTTAAGTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:105953972 original size:15 final size:15
Alignment explanation
Indices: 105953925--105953980 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
105953915 AACGACATGT
105953925 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
105953941 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
*
105953954 ATATTATTTAATTAT
1 ATATTATTTAATTAA
*
105953969 ATATCATTTAAT
1 ATATTATTTAAT
105953981 CCCGCAACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.21
14 2 0.06
15 14 0.41
16 5 0.15
17 3 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:105954134 original size:9 final size:9
Alignment explanation
Indices: 105954120--105954394 Score: 221
Period size: 9 Copynumber: 31.4 Consensus size: 9
105954110 ATAAACGTAC
105954120 ATAACTTAT
1 ATAACTTAT
*
105954129 ATAACTTAG
1 ATAACTTAT
*
105954138 ATAA-ATAT
1 ATAACTTAT
105954146 ATAACTTAT
1 ATAACTTAT
*
105954155 ATAACTTAC
1 ATAACTTAT
*
105954164 ATGACTTAT
1 ATAACTTAT
* *
105954173 ATAACATAC
1 ATAACTTAT
105954182 ATAACTTAT
1 ATAACTTAT
105954191 ATAACTTAT
1 ATAACTTAT
*
105954200 ATAACTTAG
1 ATAACTTAT
*
105954209 ATAA-ATAT
1 ATAACTTAT
*
105954217 ATAACTTAC
1 ATAACTTAT
105954226 ATAACTTAT
1 ATAACTTAT
*
105954235 ATAACTTAC
1 ATAACTTAT
105954244 AT-A-TATAT
1 ATAACT-TAT
*
105954252 ATAACTTAC
1 ATAACTTAT
*
105954261 ATAA-ATAT
1 ATAACTTAT
* *
105954269 ATATCATAT
1 ATAACTTAT
*
105954278 CATAACTTAC
1 -ATAACTTAT
*
105954288 ATAACTTAC
1 ATAACTTAT
105954297 AT-A--TAT
1 ATAACTTAT
105954303 ATAACTTAT
1 ATAACTTAT
*
105954312 ATAACTTAC
1 ATAACTTAT
105954321 ATAACTTAT
1 ATAACTTAT
*
105954330 ATAACTTAG
1 ATAACTTAT
105954339 ATAA--TAT
1 ATAACTTAT
* *
105954346 ATAATTTAC
1 ATAACTTAT
*
105954355 ATAA-ATAT
1 ATAACTTAT
* *
105954363 ATATCATAT
1 ATAACTTAT
*
105954372 CATAACTTAA
1 -ATAACTTAT
*
105954382 ATAACTTAC
1 ATAACTTAT
105954391 ATAA
1 ATAA
105954395 TACTTAAATA
Statistics
Matches: 212, Mismatches: 40, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
6 4 0.02
7 8 0.04
8 28 0.13
9 159 0.75
10 13 0.06
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:105954171 original size:35 final size:35
Alignment explanation
Indices: 105954117--105954358 Score: 240
Period size: 35 Copynumber: 7.2 Consensus size: 35
105954107 TTAATAAACG
105954117 TACATAACTTATATAACTTAGATAAATATATAACT
1 TACATAACTTATATAACTTAGATAAATATATAACT
* * * * *
105954152 TATATAACTTACATGACTTATATAACATACATAACT
1 TACATAACTTATATAACTTAGATAA-ATATATAACT
*
105954188 TATATAACTTATATAACTTAGATAAATATATAACT
1 TACATAACTTATATAACTTAGATAAATATATAACT
* *
105954223 TACATAACTTATATAACTTACATATATATATAACT
1 TACATAACTTATATAACTTAGATAAATATATAACT
*
105954258 TACATAA---ATAT-A--T--AT-CATATCATAACT
1 TACATAACTTATATAACTTAGATAAATAT-ATAACT
* * **
105954285 TACATAACTTACAT-A-TATATA-ACTTATATAACT
1 TACATAACTTATATAACT-TAGATAAATATATAACT
*
105954318 TACATAACTTATATAACTTAGAT-AATATATAATT
1 TACATAACTTATATAACTTAGATAAATATATAACT
105954352 TACATAA
1 TACATAA
105954359 ATATATATCA
Statistics
Matches: 174, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.02
27 15 0.09
29 1 0.01
30 4 0.02
31 1 0.01
32 5 0.03
33 19 0.11
34 24 0.14
35 70 0.40
36 31 0.18
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (35 bp):
TACATAACTTATATAACTTAGATAAATATATAACT
Found at i:105954171 original size:62 final size:62
Alignment explanation
Indices: 105954088--105954334 Score: 267
Period size: 62 Copynumber: 4.0 Consensus size: 62
105954078 AATATATTTG
* * *
105954088 ATATCATAATTTACACAACTTA-ATAAACGTACATAACTTATATAACTTAGATAA-ATATATAAC
1 ATAT-ATAACTTACATAACTTATAT-AAC-TACATAACTTATATAACTTACATAACATATATAAC
* * * * *
105954151 TTATATAACTTACATGACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAA-
1 ATATATAACTTACATAACTTATATAAC-TACATAACTTATATAACTTACATAACATATATAAC
*
105954213 ATATATAACTTACATAACTTATATAACTTACAT-A-TATATATAACTTACATAA-ATATATATC
1 ATATATAACTTACATAACTTATATAAC-TACATAACT-TATATAACTTACATAACATATATAAC
* * *
105954274 ATATCATAACTTACATAACTTACAT-A-TATATAACTTATATAACTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACTTATATAACTACATAACTTATATAACTTACATAACATATATAAC
105954335 TTAGATAATA
Statistics
Matches: 157, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.03
60 23 0.15
61 29 0.18
62 90 0.57
63 11 0.07
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (62 bp):
ATATATAACTTACATAACTTATATAACTACATAACTTATATAACTTACATAACATATATAAC
Found at i:105954428 original size:94 final size:95
Alignment explanation
Indices: 105954152--105954429 Score: 325
Period size: 94 Copynumber: 2.9 Consensus size: 95
105954142 ATATATAACT
** * * * *
105954152 TATATAACTTACATGACTTATATAACATA-CATAACTTATATAACTTATATAACTTAGATAAATA
1 TATATAACTTACAT-AAATATATATCATATCATAACTTAAATAACTTACATAA--TA-TTAAATA
*
105954216 TATAAC-TTACATAACTTATATAACTTACATATA
62 TATATCATTACATAACTTATATAACTTACATATA
* *
105954249 TATATAACTTACATAAATATATATCATATCATAACTTACATAACTTACAT-ATATATAACT-TAT
1 TATATAACTTACATAAATATATATCATATCATAACTTAAATAACTTACATAATAT-TAAATATAT
* *
105954312 ATAACTTACATAACTTATATAACTTAGATA-A
65 ATCA-TTACATAACTTATATAACTTACATATA
*
105954343 TATATAATTTACATAAATATATATCATATCATAACTTAAATAACTTACATAATACTTAAATATAT
1 TATATAACTTACATAAATATATATCATATCATAACTTAAATAACTTACATAATA-TTAAATATAT
* *
105954408 ATCATT-CATATCTTACATAACT
65 ATCATTACATAACTTATATAACT
105954430 AGCTTACGAA
Statistics
Matches: 158, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
93 4 0.03
94 69 0.44
95 33 0.21
96 19 0.12
97 33 0.21
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (95 bp):
TATATAACTTACATAAATATATATCATATCATAACTTAAATAACTTACATAATATTAAATATATA
TCATTACATAACTTATATAACTTACATATA
Found at i:105959620 original size:13 final size:14
Alignment explanation
Indices: 105959604--105959632 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
105959594 TTCTAAATAT
105959604 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
105959617 TTATAATTGTTTAA
1 TTATAATTGTTTAA
105959631 TT
1 TT
105959633 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:105960081 original size:21 final size:21
Alignment explanation
Indices: 105960046--105960121 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
105960036 ACTTAGAGTG
* *
105960046 GAGGCAACAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
105960067 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
* *
105960088 GAGGCA-CGAGCGAAGGAGGTA
1 GAGGCAGC-AGCGAGGGAGGCA
105960109 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
105960122 TGGCAGCAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 1 0.02
21 45 0.96
22 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.49, T:0.01
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:105960630 original size:43 final size:43
Alignment explanation
Indices: 105960513--105960619 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
105960503 GAAAAGCGCA
** * * *
105960513 GCTAAAAGTAATGGCTTTTAGCGGCG-TTTGCCAAAAAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTT-CCCAACAAACGCC
105960556 GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAACGCC
105960599 GCTAAAAGCCATGACTTTTAG
1 GCTAAAAGCCATGACTTTTAG
105960620 TTGTGCTTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 55 0.95
44 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (43 bp):
GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAACGCC
Found at i:105960642 original size:38 final size:41
Alignment explanation
Indices: 105960513--105960644 Score: 128
Period size: 43 Copynumber: 3.2 Consensus size: 41
105960503 GAAAAGCGCA
** * *
105960513 GCTAAAAGTAATGGCTTTTAGCGGCG-TTTGCCAAAAAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTT-CC--ACAAACGCC
105960556 GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTT-CC-ACAAACGCC
** *
105960599 GCTAAAAGCCATGACTTTTAGTTGTGCTTT-C-C-AACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCACAAACGCC
105960637 GCTAAAAG
1 GCTAAAAG
105960645 TCTATTTTCT
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
38 14 0.17
39 1 0.01
41 1 0.01
43 59 0.74
44 5 0.06
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (41 bp):
GCTAAAAGCCATGACTTTTAGCGGCGCTTTCCACAAACGCC
Found at i:105964657 original size:112 final size:112
Alignment explanation
Indices: 105964460--105964678 Score: 368
Period size: 112 Copynumber: 2.0 Consensus size: 112
105964450 CTAAGGATAC
* * * * *
105964460 TGATGCACTCACTCTTGATGAAATTCAGAACTCCTTTTTGGTCCATGAGCAGAATATTAATAGAA
1 TGATGAACTCACTCTTGATGAAATTCAGAACTCCTTGTTGGTCCATGAGCAGAAGATGAACAGAA
105964525 CTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATTACTCT
66 CTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATTACTCT
*
105964572 TGATGAACTCACTCTTGAT-AAACTTCAGAGCTCCTTGTTGGTCCATGAGCAGAAGATGAACAGA
1 TGATGAACTCACTCTTGATGAAA-TTCAGAACTCCTTGTTGGTCCATGAGCAGAAGATGAACAGA
105964636 ACTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATT
65 ACTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATT
105964679 CTTTTAGAGG
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
111 3 0.03
112 97 0.97
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (112 bp):
TGATGAACTCACTCTTGATGAAATTCAGAACTCCTTGTTGGTCCATGAGCAGAAGATGAACAGAA
CTTCTACCTCAATAGAGCAGGCTTTGAAAGTTTCAACTCATTACTCT
Found at i:105967370 original size:20 final size:19
Alignment explanation
Indices: 105967334--105967375 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
105967324 AATATATGTA
105967334 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
105967354 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
105967373 TTA
1 TTA
105967376 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:105967390 original size:23 final size:18
Alignment explanation
Indices: 105967334--105967375 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
105967324 AATATATGTA
105967334 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
105967354 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
105967373 TTA
1 TTA
105967376 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:105967502 original size:16 final size:15
Alignment explanation
Indices: 105967483--105967551 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 15
105967473 ATTAACCATA
105967483 TATTATTTCATATTAT
1 TATTATTT-ATATTAT
105967499 TATTA-TT-TATTAT
1 TATTATTTATATTAT
*
105967512 ATATT-TTTAAATTAT
1 -TATTATTTATATTAT
*
105967527 TATTATTT-TA-CAT
1 TATTATTTATATTAT
105967540 TATTATTTATAT
1 TATTATTTATAT
105967552 ATTTTTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
13 16 0.36
14 13 0.30
15 10 0.23
16 5 0.11
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATTTATATTAT
Found at i:105967526 original size:38 final size:38
Alignment explanation
Indices: 105967484--105967558 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
105967474 TTAACCATAT
*
105967484 ATTATT-TCATATTATTATTATT-TATTATATATTTTTAA
1 ATTATTATCATATTA-CATTATTAT-TTATATATTTTTAA
* *
105967522 ATTATTATTATTTTACATTATTATTTATATATTTTTA
1 ATTATTATCATATTACATTATTATTTATATATTTTTA
105967559 CTTGTGTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 25 0.78
39 7 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (38 bp):
ATTATTATCATATTACATTATTATTTATATATTTTTAA
Found at i:105967570 original size:19 final size:19
Alignment explanation
Indices: 105967484--105967592 Score: 70
Period size: 19 Copynumber: 5.7 Consensus size: 19
105967474 TTAACCATAT
105967484 ATTATTTCATAT-TATTATTA
1 ATTATTT-ATATAT-TTATTA
*
105967504 TTTA-TTATATATTT-TTAA
1 ATTATTTATATATTTATT-A
105967522 ATTA-TTAT-TATTTTACATT-
1 ATTATTTATATA-TTT--ATTA
105967541 ATTATTTATATATTT-TTA
1 ATTATTTATATATTTATTA
* * *
105967559 CTTGTGTTATATCTTTATTA
1 ATTAT-TTATATATTTATTA
105967579 ATTATTTATATATT
1 ATTATTTATATATT
105967593 ATACATTATT
Statistics
Matches: 70, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
17 6 0.09
18 20 0.29
19 24 0.34
20 16 0.23
21 4 0.06
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTATTTATATATTTATTA
Found at i:105971641 original size:14 final size:16
Alignment explanation
Indices: 105971622--105971658 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
105971612 TCGATGGCTT
105971622 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
105971636 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
105971652 TTT-CATC
1 TTTGCATC
105971659 GCATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:105971658 original size:15 final size:15
Alignment explanation
Indices: 105971622--105971671 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
105971612 TCGATGGCTT
105971622 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
105971636 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
105971652 TTT-CATCGCAT-CG
1 TTTGCATCTCATGCA
105971665 TTTGCAT
1 TTTGCAT
105971672 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:105978583 original size:137 final size:137
Alignment explanation
Indices: 105978337--105978625 Score: 524
Period size: 137 Copynumber: 2.1 Consensus size: 137
105978327 TATTGGGCCT
* * *
105978337 AAGCCCATTTAGGTAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGGAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCCT
*
105978402 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
105978467 CATATGC
131 CATATGC
*
105978474 AAGCCCATTTGGGGAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCCT
1 AAGCCCATTTGGGGAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCCT
*
105978539 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
105978604 CATATGC
131 CATATGC
105978611 AAGCCCATTTGGGGA
1 AAGCCCATTTGGGGA
105978626 GACTACTCAA
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGGAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCCT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:105980430 original size:26 final size:26
Alignment explanation
Indices: 105980401--105980484 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
105980391 CATGAAATTC
105980401 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
105980427 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105980453 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105980479 TTATCA
1 TTATCA
105980485 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:105983291 original size:204 final size:204
Alignment explanation
Indices: 105982839--105983392 Score: 810
Period size: 204 Copynumber: 2.7 Consensus size: 204
105982829 CAGATCTGGC
105982839 CTGAAGCAAGATCCAAGATGGTTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGAT-GTTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
105982904 GATTTGGCTTTCACGTGTTTACGCTGAAACAAATCTAAGATGATTTGGTATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTC-GTATTGTCAG
* * *
105982969 AGAACAAATCGAAGTCTGGCATCTCTACTTTGGCAGGGAGAAGATACATAGAAGATCTCACCTTC
129 AGAAAAAATCGAAGTCTGGCATCTCCACTTTCGCAGGGAGAAGATACATAGAAGATCTCACCTTC
*
105983034 AGATGATTTCA
194 AGATAATTTCA
* * * *
105983045 CTGAAGCAAGATCCAAAATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACGTAGCT
1 CTGAAGCAAGATCCAAGATG-TTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
105983110 GATTTGGCTTTCACGTGTTTATGCTGAAGCAAATCTAAGATGATTTGGTATCTC-TATTGTCAGA
65 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCGTATTGTCAGA
* * * *
105983174 GAAAAAATGGAAGTCTGGCATCTCCAC-TTCG-ATGGAGAGCAGATATATAGCAGATCTCACCTT
130 GAAAAAATCGAAGTCTGGCATCTCCACTTTCGCA-GG-GAGAAGATACATAGAAGATCTCACCTT
*
105983237 CAGATAATTTTA
193 CAGATAATTTCA
*
105983249 CTGAAGCAAGATCCAAGATAGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGAT-GTTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* ** * * *
105983314 GATTTGGTTTTTGCGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTC-GTATTGTCAG
105983379 A-AAACAAATCGAAG
129 AGAAA-AAATCGAAG
105983393 AAGCAGATTT
Statistics
Matches: 314, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
202 1 0.00
203 5 0.02
204 174 0.55
205 5 0.02
206 129 0.41
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (204 bp):
CTGAAGCAAGATCCAAGATGTTTGGAATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCGTATTGTCAGAG
AAAAAATCGAAGTCTGGCATCTCCACTTTCGCAGGGAGAAGATACATAGAAGATCTCACCTTCAG
ATAATTTCA
Found at i:105985063 original size:20 final size:19
Alignment explanation
Indices: 105985027--105985068 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
105985017 AATATATGTA
105985027 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
105985047 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
105985066 TTA
1 TTA
105985069 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:105985083 original size:23 final size:18
Alignment explanation
Indices: 105985027--105985068 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
105985017 AATATATGTA
105985027 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
105985047 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
105985066 TTA
1 TTA
105985069 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:105985194 original size:16 final size:16
Alignment explanation
Indices: 105985175--105985341 Score: 71
Period size: 19 Copynumber: 10.0 Consensus size: 16
105985165 ATTAACCATA
*
105985175 TATTATTTCATATTAT
1 TATTATTTTATATTAT
105985191 TATTA--TT-TATTAT
1 TATTATTTTATATTAT
105985204 ATATT-TTTTA-ATTAT
1 -TATTATTTTATATTAT
*
105985219 TATTATTTTACATTAT
1 TATTATTTTATATTAT
* *
105985235 TA-T-TTATATATTTT
1 TATTATTTTATATTAT
* *
105985249 TACTTGTATTATATCTTTAT
1 TA--T-TATTTTAT-ATTAT
105985269 TAATTATTTATATATTAT
1 T-ATTATTT-TATATTAT
*
105985287 ACATTATTTTTACATATATAT
1 -TATTA-TTTT--ATAT-TAT
105985308 T-TTCATATTATATATTAT
1 TATT-AT-TT-TATATTAT
*
105985326 AATTATTTTATATTAT
1 TATTATTTTATATTAT
105985342 GTCATTTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 46
0.67 0.06 0.26
Matches are distributed among these distances:
13 6 0.05
14 19 0.16
15 13 0.11
16 20 0.17
17 2 0.02
18 19 0.16
19 22 0.19
20 11 0.09
21 5 0.04
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (16 bp):
TATTATTTTATATTAT
Found at i:105985218 original size:38 final size:38
Alignment explanation
Indices: 105985176--105985249 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
105985166 TTAACCATAT
*
105985176 ATTATT-TCATATTATTATTATT-TATTATATATTTTTTA
1 ATTATTATCATATTA-CATTATTAT-TTATATATTTTTTA
* *
105985214 ATTATTATTATTTTACATTATTATTTATATATTTTT
1 ATTATTATCATATTACATTATTATTTATATATTTTT
105985250 ACTTGTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 24 0.77
39 7 0.23
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (38 bp):
ATTATTATCATATTACATTATTATTTATATATTTTTTA
Found at i:105985219 original size:11 final size:10
Alignment explanation
Indices: 105985187--105985286 Score: 59
Period size: 11 Copynumber: 10.0 Consensus size: 10
105985177 TTATTTCATA
105985187 TTATTATTAT
1 TTATTATTAT
105985197 TTATTATATAT
1 TTATTAT-TAT
*
105985208 TTTTTAATTA-
1 TTATT-ATTAT
105985218 TTATTATT-T
1 TTATTATTAT
*
105985227 TACATTATTAT
1 T-TATTATTAT
105985238 TTA-TA-TAT
1 TTATTATTAT
*
105985246 TT-TTACT-T
1 TTATTATTAT
* *
105985254 GTATTATATCT
1 TTATTAT-TAT
105985265 TTATTAATTAT
1 TTATT-ATTAT
105985276 TTATATATTAT
1 TTAT-TATTAT
105985287 ACATTATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
8 9 0.13
9 10 0.14
10 19 0.27
11 27 0.39
12 5 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (10 bp):
TTATTATTAT
Found at i:105985262 original size:19 final size:19
Alignment explanation
Indices: 105985176--105985284 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
105985166 TTAACCATAT
105985176 ATTATTTCATAT-TATTATTA
1 ATTATTT-ATATAT-TTATTA
* *
105985196 TTTA-TTATATATTTTTTA
1 ATTATTTATATATTTATTA
105985214 ATTA-TTAT-TATTTTACATT-
1 ATTATTTATATA-TTT--ATTA
105985233 ATTATTTATATATTT-TTA
1 ATTATTTATATATTTATTA
* * *
105985251 CTTGTATTATATCTTTATTA
1 ATTAT-TTATATATTTATTA
105985271 ATTATTTATATATT
1 ATTATTTATATATT
105985285 ATACATTATT
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
17 4 0.06
18 22 0.31
19 24 0.34
20 18 0.26
21 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (19 bp):
ATTATTTATATATTTATTA
Found at i:105985319 original size:13 final size:12
Alignment explanation
Indices: 105985216--105985341 Score: 52
Period size: 11 Copynumber: 10.5 Consensus size: 12
105985206 ATTTTTTAAT
105985216 TATTATTATTTTA
1 TATTA-TATTTTA
*
105985229 CATTATTATTTATA
1 TATTA-TATTT-TA
*
105985243 TATT-T-TTACTTG
1 TATTATATT--TTA
*
105985255 TATTATATCTT-
1 TATTATATTTTA
105985266 TATTA-ATTATT-
1 TATTATATT-TTA
*
105985277 TA-TATATTATA
1 TATTATATTTTA
*
105985288 CATTAT-TTTTA
1 TATTATATTTTA
*
105985299 CATATATATTTTCA
1 TAT-TATATTTT-A
*
105985313 TATTATATATTA
1 TATTATATTTTA
*
105985325 TAAT-TATTTTA
1 TATTATATTTTA
105985336 TATTAT
1 TATTAT
105985342 GTCATTTTTA
Statistics
Matches: 87, Mismatches: 13, Indels: 27
0.69 0.10 0.21
Matches are distributed among these distances:
10 5 0.06
11 31 0.36
12 19 0.22
13 23 0.26
14 9 0.10
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (12 bp):
TATTATATTTTA
Found at i:105988909 original size:17 final size:17
Alignment explanation
Indices: 105988870--105988910 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
105988860 TTTAAATGAG
105988870 GGATTGTTAATAAATCT
1 GGATTGTTAATAAATCT
105988887 GG-TTGTTAATAAAATC-
1 GGATTGTTAAT-AAATCT
105988903 GGATTGTT
1 GGATTGTT
105988911 TTCCTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (17 bp):
GGATTGTTAATAAATCT
Found at i:105989995 original size:21 final size:22
Alignment explanation
Indices: 105989969--105990021 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
105989959 AATTTATATT
105989969 TATTTTAAATATT-TTGTT-AGA
1 TATTTTAAA-ATTATTGTTAAGA
105989990 TATTTTAAAATTATTGTTAAGA
1 TATTTTAAAATTATTGTTAAGA
105990012 -ATTTTTAAAA
1 TA-TTTTAAAA
105990022 ATAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.10
21 15 0.52
22 11 0.38
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (22 bp):
TATTTTAAAATTATTGTTAAGA
Found at i:105997169 original size:9 final size:9
Alignment explanation
Indices: 105997155--105997188 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
105997145 TAGGGTTCCA
105997155 TTTCATGAT
1 TTTCATGAT
105997164 TTTCATGAT
1 TTTCATGAT
105997173 TTTCATGAT
1 TTTCATGAT
105997182 TTTCATG
1 TTTCATG
105997189 TAATTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.56
Consensus pattern (9 bp):
TTTCATGAT
Found at i:106007504 original size:21 final size:22
Alignment explanation
Indices: 106007472--106007515 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
106007462 GAAATAAAAA
* *
106007472 CTTGCAATTTAATCATTCCAAG
1 CTTGCAATTTAAACATTCAAAG
106007494 CTTGC-ATTTAAACATTCAAAG
1 CTTGCAATTTAAACATTCAAAG
106007515 C
1 C
106007516 ATCACTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (22 bp):
CTTGCAATTTAAACATTCAAAG
Found at i:106011670 original size:3 final size:3
Alignment explanation
Indices: 106011662--106011713 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
106011652 CTAATAAATA
* * * * *
106011662 AAT AAT AAT AAT GAT AAT AAA AAT AAT GAT AAT GAT ATT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106011709 AAT AA
1 AAT AA
106011714 AAAATCTAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:106011687 original size:21 final size:21
Alignment explanation
Indices: 106011661--106011713 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
106011651 ACTAATAAAT
106011661 AAATAATAATAATGATAATAA
1 AAATAATAATAATGATAATAA
* *
106011682 AAATAATGATAATGATATTAA
1 AAATAATAATAATGATAATAA
*
106011703 TAAT-ATAATAA
1 AAATAATAATAA
106011714 AAAATCTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (21 bp):
AAATAATAATAATGATAATAA
Found at i:106012199 original size:3 final size:3
Alignment explanation
Indices: 106012007--106012180 Score: 142
Period size: 3 Copynumber: 57.7 Consensus size: 3
106011997 TTAAATTGGT
* * *
106012007 TAA T-A TAA TAA TAA CAA TAA TGTA TAA GTAA -AGA AAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TA-A TAA TAA TAA TAA
106012052 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
106012099 CAA -AGA TAG TAA TAA TAA TAG TAA TAA AAA TAA AAA TAA AAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** *
106012144 TAG TAA TAA TAA TACA TTAA TAA GGA TAA CAA TAA TA
1 TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TA
106012181 TTTTAGCAAT
Statistics
Matches: 136, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
2 8 0.06
3 117 0.86
4 9 0.07
5 2 0.01
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:106012704 original size:2 final size:2
Alignment explanation
Indices: 106012699--106012736 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
106012689 TCTCAAGTTT
106012699 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
106012737 CAATATCTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:106015898 original size:179 final size:178
Alignment explanation
Indices: 106015599--106015947 Score: 585
Period size: 180 Copynumber: 2.0 Consensus size: 178
106015589 TCTTTCTTTC
* *
106015599 TTTCTTTCTTTTTTTTTTGAATAAAAGACCAAGTTGTATTAAAAGAAAAAACAAAACAAAAGTTT
1 TTTCTTTCTTTTTTTTTTGAATAAAAGACCAAGTTATATTAAAAGAAAAAACAAAACAAAAGTTC
* *
106015664 TGGCCCAACCCCAATAAGCCCGAAAACCAGCAATGAAACATAAAACCAAGACAACAATT-AAAAA
66 TGGCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAGACAACAATTAAAAAA
*
106015728 TAAATTGCCCAGCCTAGCCCAACCAAACAGAAAAAGTATATTAGTTCT
131 TAAATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTATATTAGTTCT
*
106015776 TTTCTTTTCTTTCTTTTCTTTGAATAAAAGACCAGGTTATATTAAAAGAAAAAACAAAACAAAAG
1 TTTC-TTTCTTT-TTTT-TTTGAATAAAAGACCAAGTTATATTAAAAGAAAAAACAAAACAAAAG
*
106015841 TTCTGG-CCAACCCCAATGAGCCCAAAAACCACCAATGAAACATAAAACCAAGACAACAATTAAA
63 TTCTGGCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAGACAACAATTAAA
*
106015905 AAATAAATTACCCAGCCTAGCCCAACCAAACAGAAAATGTATA
128 AAATAAATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTATA
106015948 CCCATCTTTA
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
177 4 0.03
178 7 0.04
179 56 0.35
180 93 0.58
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.23
Consensus pattern (178 bp):
TTTCTTTCTTTTTTTTTTGAATAAAAGACCAAGTTATATTAAAAGAAAAAACAAAACAAAAGTTC
TGGCCCAACCCCAATAAGCCCAAAAACCACCAATGAAACATAAAACCAAGACAACAATTAAAAAA
TAAATTACCCAGCCTAGCCCAACCAAACAGAAAAAGTATATTAGTTCT
Found at i:106018152 original size:26 final size:25
Alignment explanation
Indices: 106018117--106018226 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 25
106018107 TGGTACAAAT
106018117 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
*
106018143 TAATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
106018169 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
106018195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
106018221 TGATAA
1 TGATAA
106018227 GAATTTCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
26 76 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:106020194 original size:27 final size:27
Alignment explanation
Indices: 106020152--106020251 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
106020142 GAGGAAGCTT
*
106020152 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
106020179 TCTAGTGGCTCTGCCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
106020205 TTCTGGTGGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* *
106020234 TCTGGTGACTCTGTCACA
1 TCTGGTGGCTCTGCCACA
106020252 TTGTCTGTTC
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 43 0.72
28 15 0.25
29 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:106025976 original size:85 final size:84
Alignment explanation
Indices: 106025839--106025994 Score: 192
Period size: 85 Copynumber: 1.8 Consensus size: 84
106025829 GTCTGAGACA
* * * *
106025839 TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTGAGATTTATGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATG-ATAAGACCACGTCCGGGA
106025904 CATCGGCATCGTATCTGATT
65 CATCGGCATCGTATCTGATT
*
106025924 TCGTGTAAGACCCTG-CTTGGGACAGAGGCATCGATATTGA-ATTACATG-TAAGACCACGTCCG
1 TCGTGTAAGACCCTGTC-TGGGACACAGGCATCG--ATTGAGATT-CATGATAAGACCACGTCCG
*
106025986 GGACGTCGG
62 GGACATCGG
106025995 TATTGTACTT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
84 1 0.02
85 49 0.80
86 3 0.05
87 8 0.13
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATGATAAGACCACGTCCGGGAC
ATCGGCATCGTATCTGATT
Found at i:106035678 original size:28 final size:28
Alignment explanation
Indices: 106035630--106035715 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
106035620 GGTAATGCAA
* *
106035630 AAATCTAACCGTTATAATAT-GATCGTTG
1 AAATCTGACCGTTACAATATGGA-CGTTG
* *
106035658 GAATCTGACCGTTACATTATGGACGTTG
1 AAATCTGACCGTTACAATATGGACGTTG
* * *
106035686 AAATTTGACCATTGCAATATGGACGTTG
1 AAATCTGACCGTTACAATATGGACGTTG
106035714 AA
1 AA
106035716 TTTTTGGGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 46 0.96
29 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (28 bp):
AAATCTGACCGTTACAATATGGACGTTG
Found at i:106036809 original size:9 final size:8
Alignment explanation
Indices: 106036785--106036834 Score: 50
Period size: 8 Copynumber: 6.2 Consensus size: 8
106036775 TATAAAACTC
106036785 TAAT-AAA
1 TAATAAAA
106036792 TAA-AAAA
1 TAATAAAA
106036799 TAAATAAAA
1 T-AATAAAA
*
106036808 TAATTAAA
1 TAATAAAA
*
106036816 TATTAAAA
1 TAATAAAA
106036824 TAATATAAA
1 TAATA-AAA
106036833 TA
1 TA
106036835 TATACTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 7 0.20
8 18 0.51
9 10 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
TAATAAAA
Found at i:106036822 original size:16 final size:17
Alignment explanation
Indices: 106036803--106036835 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
106036793 AAAAAATAAA
106036803 TAAAATAAT-TAAATAT
1 TAAAATAATATAAATAT
106036819 TAAAATAATATAAATAT
1 TAAAATAATATAAATAT
106036836 ATACTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAATAATATAAATAT
Found at i:106037398 original size:13 final size:13
Alignment explanation
Indices: 106037382--106037430 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
106037372 TTAAATGTAT
*
106037382 TTCTTAAAATCAC
1 TTCTTAAAAGCAC
**
106037395 TTCTCCAAAGCAC
1 TTCTTAAAAGCAC
* *
106037408 TCCTTAAAAGCAA
1 TTCTTAAAAGCAC
106037421 TTCTTAAAAG
1 TTCTTAAAAG
106037431 TAAGACTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (13 bp):
TTCTTAAAAGCAC
Found at i:106041379 original size:30 final size:30
Alignment explanation
Indices: 106041345--106041405 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
106041335 TTATTTTATC
106041345 GTTAATTTTCTTATTATTTTA-AAGGCATTT
1 GTTAATTTTCTTATTATTTTAGAA-GCATTT
*
106041375 GTTAATTTTTTTATTATTTTAGAAGCATTT
1 GTTAATTTTCTTATTATTTTAGAAGCATTT
106041405 G
1 G
106041406 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.57
Consensus pattern (30 bp):
GTTAATTTTCTTATTATTTTAGAAGCATTT
Found at i:106042703 original size:2 final size:2
Alignment explanation
Indices: 106042696--106042721 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
106042686 TTTTGGAGTG
106042696 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
106042722 GTTTTCTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106042870 original size:35 final size:36
Alignment explanation
Indices: 106042831--106042902 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
106042821 GTTTGTTTCA
* * *
106042831 GATGGATTAGCTCTTATAAGCAT-TGGTGTGTTTTG
1 GATGGACTAACTCTTATAAGCATCTGGTGTATTTTG
* *
106042866 GATGGACTAACTCTTGTGAGCATCTGGTGTATTTTG
1 GATGGACTAACTCTTATAAGCATCTGGTGTATTTTG
106042902 G
1 G
106042903 TGGGATTGTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.40
Consensus pattern (36 bp):
GATGGACTAACTCTTATAAGCATCTGGTGTATTTTG
Found at i:106045230 original size:40 final size:40
Alignment explanation
Indices: 106045175--106045267 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 40
106045165 TTCAGTGGCA
** *** *
106045175 TTAGCGGTACTTTTTAAAAAATGGCGCTAATGCTCTATCT
1 TTAGCGGCGCTTTTTAAAAAACACCGCTAATGCTCGATCT
*
106045215 TTAGCGGCGCTTTTTAACAAACACCGCTAATGCTCGATCT
1 TTAGCGGCGCTTTTTAAAAAACACCGCTAATGCTCGATCT
106045255 TTAGCGGCGCTTT
1 TTAGCGGCGCTTT
106045268 GAGAAAACGC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTAAAAAACACCGCTAATGCTCGATCT
Found at i:106045716 original size:22 final size:23
Alignment explanation
Indices: 106045668--106045726 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
106045658 GTGGTTAAGG
106045668 GTTTAAGGTTTAT-GAGTTACTA
1 GTTTAAGGTTTATGGAGTTACTA
*
106045690 TTTTAAGGTTTATGGA-TTA-TGA
1 GTTTAAGGTTTATGGAGTTACT-A
* *
106045712 GTTTAGGGATTATGG
1 GTTTAAGGTTTATGG
106045727 TTTAAGGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 28 0.90
23 2 0.06
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.46
Consensus pattern (23 bp):
GTTTAAGGTTTATGGAGTTACTA
Found at i:106045734 original size:15 final size:15
Alignment explanation
Indices: 106045697--106045730 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
106045687 CTATTTTAAG
*
106045697 GTTTATGGATTATGA
1 GTTTAGGGATTATGA
106045712 GTTTAGGGATTATG-
1 GTTTAGGGATTATGA
106045726 GTTTA
1 GTTTA
106045731 AGGGTTGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (15 bp):
GTTTAGGGATTATGA
Found at i:106045743 original size:21 final size:22
Alignment explanation
Indices: 106045717--106045783 Score: 84
Period size: 21 Copynumber: 3.1 Consensus size: 22
106045707 TATGAGTTTA
*
106045717 GGGATTATGGTTTAAGGGTT-G
1 GGGATTAAGGTTTAAGGGTTAG
*
106045738 GGGATTAAGGTTTAGGGGTTAG
1 GGGATTAAGGTTTAAGGGTTAG
* *
106045760 GGG-TTAGGGGTTAAGGGTTAG
1 GGGATTAAGGTTTAAGGGTTAG
106045781 GGG
1 GGG
106045784 TCTAGGGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 36 0.90
22 4 0.10
ACGTcount: A:0.19, C:0.00, G:0.49, T:0.31
Consensus pattern (22 bp):
GGGATTAAGGTTTAAGGGTTAG
Found at i:106045745 original size:14 final size:14
Alignment explanation
Indices: 106045728--106045793 Score: 82
Period size: 14 Copynumber: 4.7 Consensus size: 14
106045718 GGATTATGGT
106045728 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
*
106045741 ATTAAGGTTTAGGGG
1 -TTAAGGGTTAGGGG
*
106045756 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
106045770 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
106045784 TCT-AGGGTTA
1 T-TAAGGGTTA
106045794 AGTGTTTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
14 41 0.89
15 5 0.11
ACGTcount: A:0.20, C:0.02, G:0.47, T:0.32
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:106045761 original size:7 final size:7
Alignment explanation
Indices: 106045749--106045790 Score: 66
Period size: 7 Copynumber: 5.9 Consensus size: 7
106045739 GGATTAAGGT
106045749 TTAGGGG
1 TTAGGGG
106045756 TTAGGGG
1 TTAGGGG
106045763 TTAGGGG
1 TTAGGGG
*
106045770 TTAAGGG
1 TTAGGGG
106045777 TTAGGGG
1 TTAGGGG
106045784 TCTAGGG
1 T-TAGGG
106045791 TTAAGTGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 27 0.84
8 5 0.16
ACGTcount: A:0.17, C:0.02, G:0.52, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:106045784 original size:21 final size:20
Alignment explanation
Indices: 106045714--106045795 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 20
106045704 GATTATGAGT
* *
106045714 TTAGGGATTATGGTTTAAGGG
1 TTAGGGGTTA-GGGTTAAGGG
* *
106045735 TT-GGGGATTAAGGTTTAGGGG
1 TTAGGGG-TT-AGGGTTAAGGG
106045756 TTAGGGGTTAGGGGTTAAGGG
1 TTAGGGGTTA-GGGTTAAGGG
106045777 TTAGGGGTCTAGGGTTAAG
1 TTAGGGGT-TAGGGTTAAG
106045796 TGTTTATGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
20 4 0.08
21 41 0.79
22 7 0.13
ACGTcount: A:0.21, C:0.01, G:0.45, T:0.33
Consensus pattern (20 bp):
TTAGGGGTTAGGGTTAAGGG
Found at i:106046082 original size:36 final size:37
Alignment explanation
Indices: 106046042--106046112 Score: 94
Period size: 36 Copynumber: 1.9 Consensus size: 37
106046032 TACAAATTGG
106046042 GGTTTA-AGTTTTAGGA-GTTAGGGGTTTA-GGATTAAT
1 GGTTTATA-TTTTAGGATGTTA-GGGTTTAGGGATTAAT
*
106046078 GGTTTATATTTTAGGATTTTAGGGTTTAGGGATTA
1 GGTTTATATTTTAGGATGTTAGGGTTTAGGGATTA
106046113 GAGATTAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
36 21 0.68
37 10 0.32
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (37 bp):
GGTTTATATTTTAGGATGTTAGGGTTTAGGGATTAAT
Found at i:106046113 original size:22 final size:22
Alignment explanation
Indices: 106046088--106046138 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
106046078 GGTTTATATT
106046088 TTAGGATTTTA-GGGTTTAGGG
1 TTAGGATTTTAGGGGTTTAGGG
106046109 ATTAGAGA--TTAGGGGTTTAGGG
1 -TTAG-GATTTTAGGGGTTTAGGG
*
106046131 TTTGGATT
1 TTAGGATT
106046139 AATTAGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
20 2 0.08
21 6 0.25
22 14 0.58
23 2 0.08
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (22 bp):
TTAGGATTTTAGGGGTTTAGGG
Found at i:106046854 original size:3 final size:3
Alignment explanation
Indices: 106046846--106046872 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
106046836 AACCCGATAA
106046846 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
106046873 TTAGAATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:106049927 original size:23 final size:23
Alignment explanation
Indices: 106049901--106049958 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
106049891 TAAGTGCTGC
106049901 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
*
106049924 AAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
106049947 AAATTGAAGTGT
1 AAATTGAAGTGT
106049959 CTGGAAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGTTGT
Found at i:106049954 original size:46 final size:45
Alignment explanation
Indices: 106049890--106050090 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 45
106049880 CTACTGTTTT
* *
106049890 TTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGA-AGTG
1 TTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAGA-TG
* *
106049935 CTTAAATGTTGTAAATTGAAGTG--T--CTG--G-AAATTGAGATG
1 -TTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAGATG
** * *
106049974 TTTTATCGCTGT-AATTG-AGTTGTATAAATGTTGTTAATTGAGATG
1 TTAAAT-GCTGTAAATTGAAG-TGTTTAAATGTTGTAAATTGAGATG
* *
106050019 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGA-AGTG
1 TTAAA-TGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAGA-TG
* *
106050065 CTTAAATGTTGTAAATTAAAGTGTTT
1 -TTAAATGCTGTAAATTGAAGTGTTT
106050091 TAAGTACTAC
Statistics
Matches: 122, Mismatches: 18, Indels: 30
0.72 0.11 0.18
Matches are distributed among these distances:
37 2 0.02
38 11 0.09
39 13 0.11
40 3 0.02
42 4 0.03
44 2 0.02
45 18 0.15
46 62 0.51
47 7 0.06
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (45 bp):
TTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAGATG
Found at i:106050035 original size:23 final size:23
Alignment explanation
Indices: 106050019--106050161 Score: 128
Period size: 23 Copynumber: 6.1 Consensus size: 23
106050009 AATTGAGATG
106050019 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGCAAATTGAAGTGT
* *
106050043 TTAAATGCTGTAAATTGAAGTGC
1 TTAAATGCTGCAAATTGAAGTGT
* * *
106050066 TTAAATGTTGTAAATTAAAGTGTT
1 TTAAATGCTGCAAATTGAAGTG-T
* * *
106050090 TTAAGTACTACAAATTGAAGTGT
1 TTAAATGCTGCAAATTGAAGTGT
** *
106050113 TTAGTTGCTGGAAATTG-AGATGT
1 TTAAATGCTGCAAATTGAAG-TGT
*
106050136 TT-TATCGCTGCAAATTGAAGTGT
1 TTAAAT-GCTGCAAATTGAAGTGT
106050159 TTA
1 TTA
106050162 GTTGCTGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
22 3 0.03
23 69 0.73
24 23 0.24
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (23 bp):
TTAAATGCTGCAAATTGAAGTGT
Found at i:106050557 original size:18 final size:18
Alignment explanation
Indices: 106050534--106050579 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
106050524 GCTGTATTTC
*
106050534 GACTTGCTGTTAGTAAAG
1 GACTTGCTGTTAGTAAAA
106050552 GACTTGCTGTTAGTAAAA
1 GACTTGCTGTTAGTAAAA
106050570 GACTTGCTGT
1 GACTTGCTGT
106050580 ATTTTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (18 bp):
GACTTGCTGTTAGTAAAA
Found at i:106050632 original size:19 final size:19
Alignment explanation
Indices: 106050609--106050655 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
106050599 ATTTAATCTA
*
106050609 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
106050627 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
106050647 ATTTTTATT
1 ATTTTTATT
106050656 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:106065249 original size:2 final size:2
Alignment explanation
Indices: 106065242--106065272 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
106065232 TTCATTGTAT
106065242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106065273 TAAATTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106067798 original size:4 final size:4
Alignment explanation
Indices: 106067791--106067825 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
106067781 ATATATATAT
106067791 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
106067826 TAAATACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:106070046 original size:132 final size:132
Alignment explanation
Indices: 106069809--106070059 Score: 371
Period size: 132 Copynumber: 1.9 Consensus size: 132
106069799 CAAGAAAGTG
* *
106069809 AAAGGATCTCTTCCTGATAACTTCTTTGATAGGGATGAAACCAAGTTACCTACGAATCTTATGAA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA
* *
106069874 GCCTCCAAGGGAGAATAAACTGGCAGTGAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
66 GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
106069939 TT
131 TT
* ** *
106069941 AAAGGATCTCTTCCTGATGACTTCTTTGATAAGGATGATGCCAAGTTACCTATGAATGC-CATGA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAAT-CTCATGA
* * *
106070005 AGCCTCCTAGGGAGAATATACAGGC-TTCAGAGCAGGCTAGTGCTCCAGAAACCAA
65 AGCCTCCAAGGGAGAATAAACAGGCAGTCA-AGCAGGCTAGTGCTCCAGAAACCAA
106070060 GCAAGTAAAG
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 2 0.02
132 103 0.97
133 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (132 bp):
AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA
GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
TT
Found at i:106074008 original size:12 final size:12
Alignment explanation
Indices: 106073991--106074031 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
106073981 GGAGATAGGA
106073991 AAAACAGGTTCC
1 AAAACAGGTTCC
*
106074003 AAAACAGG---A
1 AAAACAGGTTCC
106074012 AAAACAGGTTCC
1 AAAACAGGTTCC
106074024 AAAACAGG
1 AAAACAGG
106074032 AATAACAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (12 bp):
AAAACAGGTTCC
Found at i:106074012 original size:21 final size:21
Alignment explanation
Indices: 106073987--106074039 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
106073977 CAGTGGAGAT
106073987 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
106074008 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
106074029 AGGAATAACAG
1 AGGAAAAACAG
106074040 TGGCTGTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.21, T:0.09
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:106082265 original size:16 final size:16
Alignment explanation
Indices: 106082246--106082277 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
106082236 TTATTTGTCA
106082246 GTTGTTGTCATAAGCC
1 GTTGTTGTCATAAGCC
106082262 GTTGTTGTCATAAGCC
1 GTTGTTGTCATAAGCC
106082278 TTTACCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (16 bp):
GTTGTTGTCATAAGCC
Found at i:106082877 original size:2 final size:2
Alignment explanation
Indices: 106082870--106082912 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
106082860 AAATCAAGGG
106082870 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
106082912 T
1 T
106082913 GAATTTGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:106085920 original size:16 final size:17
Alignment explanation
Indices: 106085901--106085940 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
106085891 CCATCCTTCT
106085901 AATTTTCT-ACCCTTTC
1 AATTTTCTCACCCTTTC
*
106085917 AATTTT-TCATCCTTTC
1 AATTTTCTCACCCTTTC
106085933 AATTTTCT
1 AATTTTCT
106085941 TTCCACTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTTCTCACCCTTTC
Found at i:106088249 original size:25 final size:25
Alignment explanation
Indices: 106088220--106088277 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
106088210 AAATCTGAAA
106088220 TAATTTGAGATTCGGGATTTAAGTT
1 TAATTTGAGATTCGGGATTTAAGTT
106088245 TAATTTGAGATTCGGGATTTAAGTT
1 TAATTTGAGATTCGGGATTTAAGTT
*
106088270 CAATTTGA
1 TAATTTGA
106088278 TAAAAACTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.43
Consensus pattern (25 bp):
TAATTTGAGATTCGGGATTTAAGTT
Found at i:106088305 original size:2 final size:2
Alignment explanation
Indices: 106088298--106088324 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
106088288 GGTAAAATTA
106088298 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
106088325 AAACTTAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106099894 original size:2 final size:2
Alignment explanation
Indices: 106099887--106099913 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
106099877 ACAATTAAAC
106099887 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
106099914 CAAAACAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106100245 original size:10 final size:10
Alignment explanation
Indices: 106100230--106100302 Score: 51
Period size: 11 Copynumber: 7.0 Consensus size: 10
106100220 TATTTTACAT
106100230 ATAAAATATA
1 ATAAAATATA
*
106100240 ATAAAATAAAA
1 ATAAAAT-ATA
* *
106100251 ATAAAAAAGAA
1 ATAAAATA-TA
106100262 ATAAAA-ATA
1 ATAAAATATA
*
106100271 A-AAAATAGA
1 ATAAAATATA
106100280 ATAAATATATATA
1 AT-AA-A-ATATA
106100293 ATAAAATATA
1 ATAAAATATA
106100303 TAATAAAAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
8 4 0.08
9 5 0.10
10 14 0.27
11 19 0.37
12 3 0.06
13 6 0.12
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (10 bp):
ATAAAATATA
Found at i:106100247 original size:5 final size:5
Alignment explanation
Indices: 106100230--106100316 Score: 52
Period size: 5 Copynumber: 16.4 Consensus size: 5
106100220 TATTTTACAT
* * * *
106100230 ATAAA ATATA ATAAA ATAAAA ATAAA AAAGAA ATAAA A-ATA A-AAA ATAGA
1 ATAAA ATAAA ATAAA AT-AAA ATAAA ATA-AA ATAAA ATAAA ATAAA ATAAA
*
106100280 ATAAA TATATATA ATAAA ATATATA ATAAA AGAAA AT
1 ATAAA -ATA-A-A ATAAA ATA-A-A ATAAA ATAAA AT
106100317 TTTTTTAAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
4 6 0.09
5 34 0.53
6 15 0.23
7 8 0.12
8 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:106100253 original size:6 final size:6
Alignment explanation
Indices: 106100242--106100274 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
106100232 AAAATATAAT
*
106100242 AAAATA AAAATA AAAA-A GAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
106100275 ATAGAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:106100265 original size:17 final size:17
Alignment explanation
Indices: 106100243--106100275 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
106100233 AAATATAATA
106100243 AAATAAAAATAAAAAAG
1 AAATAAAAATAAAAAAG
106100260 AAATAAAAATAAAAAA
1 AAATAAAAATAAAAAA
106100276 TAGAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAATAAAAATAAAAAAG
Found at i:106100274 original size:18 final size:18
Alignment explanation
Indices: 106100239--106100284 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
106100229 TATAAAATAT
106100239 AATA-AAATAAAAATAAA
1 AATAGAAATAAAAATAAA
106100256 AA-AGAAATAAAAATAAAA
1 AATAGAAATAAAAAT-AAA
106100274 AATAG-AATAAA
1 AATAGAAATAAA
106100285 TATATATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.04
17 12 0.46
18 11 0.42
19 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (18 bp):
AATAGAAATAAAAATAAA
Found at i:106100282 original size:12 final size:12
Alignment explanation
Indices: 106100267--106100310 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
106100257 AAGAAATAAA
* *
106100267 AATAAAAAATAG
1 AATAAAATATAT
106100279 AATAAATATATAT
1 AATAAA-ATATAT
106100292 AATAAAATATAT
1 AATAAAATATAT
106100304 AATAAAA
1 AATAAAA
106100311 GAAAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 19 0.66
13 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (12 bp):
AATAAAATATAT
Found at i:106100285 original size:22 final size:22
Alignment explanation
Indices: 106100232--106100309 Score: 58
Period size: 25 Copynumber: 3.6 Consensus size: 22
106100222 TTTTACATAT
*
106100232 AAAATATAATAAAATAAAAAT-A
1 AAAATAGAAT-AAATAAAAATAA
106100254 AAAA-AG---AAATAAAAATAA
1 AAAATAGAATAAATAAAAATAA
106100272 AAAATAGAATAAATATATATAATAA
1 AAAATAGAATAAATA-A-A-AATAA
* *
106100297 AATATATAATAAA
1 AAAATAGAATAAA
106100310 AGAAAATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
17 10 0.22
18 5 0.11
19 2 0.04
21 1 0.02
22 9 0.20
23 1 0.02
24 1 0.02
25 16 0.36
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (22 bp):
AAAATAGAATAAATAAAAATAA
Found at i:106100295 original size:18 final size:17
Alignment explanation
Indices: 106100228--106100316 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 17
106100218 AATATTTTAC
*
106100228 ATATAAAATATAATAAA
1 ATATAAAATAAAATAAA
*
106100245 ATA-AAAATAAAAAAGAA
1 ATATAAAATAAAATA-AA
106100262 ATA-AAAATAAAA-AATA
1 ATATAAAATAAAATAA-A
106100278 GA-ATAAATATATATAATAAA
1 -ATATAAA-ATA-A-AATAAA
* *
106100298 ATATATAATAAAAGAAA
1 ATATAAAATAAAATAAA
106100315 AT
1 AT
106100317 TTTTTTAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
15 1 0.02
16 12 0.20
17 28 0.47
18 4 0.07
19 5 0.08
20 7 0.12
21 2 0.03
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
ATATAAAATAAAATAAA
Found at i:106100934 original size:26 final size:25
Alignment explanation
Indices: 106100877--106101011 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 25
106100867 TGATACAAAT
106100877 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
106100902 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
*
106100928 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
106100954 TGATAATTGGTTAGGTAAATGTTTCA
1 TGATAA-TGGTTAGGTAAATGTTTCA
106100980 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
106101006 TGATAA
1 TGATAA
106101012 GAATTTCATG
Statistics
Matches: 103, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
24 1 0.01
25 20 0.19
26 80 0.78
27 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:106105281 original size:86 final size:85
Alignment explanation
Indices: 106105190--106105462 Score: 250
Period size: 86 Copynumber: 3.1 Consensus size: 85
106105180 ATGCCAAATC
*
106105190 ATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATTTGCTATGTATCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
106105255 AATGGAGATGCCAAATCTGTT
65 AATGGAGATGCCAAATCTGTT
* * * * * * * * * *
106105276 ATCTTGGATCTGCTTCGGCGTGAGAACATCCGAAAGTCAAATCTGCTATGTCT-TCGATTTGTTC
1 ATCTTGGATCTGCTTC--AGT-AAAACATCTGAAGGTTAGATCTGCTATGTATCT-G--CTCTCC
* ***
106105340 GTTGTAAACACAAGAATGCCAAATC----
60 GTCG-AAA-TGGAG-ATGCCAAATCTGTT
* *
106105365 ATCTTGGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGA
1 ATCTTGGATCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
*
106105430 AATGGAGATGCCAGATCTGTT
65 AATGGAGATGCCAAATCTGTT
106105451 ATCTTGGATCTG
1 ATCTTGGATCTG
106105463 TTTCGGTATG
Statistics
Matches: 140, Mismatches: 32, Indels: 30
0.69 0.16 0.15
Matches are distributed among these distances:
82 9 0.06
83 2 0.01
84 3 0.02
85 5 0.04
86 29 0.21
87 27 0.19
88 25 0.18
89 19 0.14
90 6 0.04
91 3 0.02
92 2 0.01
93 10 0.07
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (85 bp):
ATCTTGGATCTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAA
ATGGAGATGCCAAATCTGTT
Found at i:106105432 original size:175 final size:175
Alignment explanation
Indices: 106105139--106105593 Score: 732
Period size: 175 Copynumber: 2.6 Consensus size: 175
106105129 CGTGAAAGCT
* * * *
106105139 AAATCTGCTGTGTCTTCGATTTGCTCATTGTGAACACAAGGATGCCAAATCATCTTGGATCTGCT
1 AAATCTGCTATGTCTTCGATTTGTTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCT
* *
106105204 TCAGTA-AAATCATCTGAAGGTTAGATTTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCA
66 TCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCA
*
106105268 AATCTGTTATCTTGGATCTGCTTCGGCGTGAGAACATCCGAAAGTC
130 AATCTGTTATCTTGGATCTGCTTCGGCATGAGAACATCCGAAAGTC
*
106105314 AAATCTGCTATGTCTTCGATTTGTTCGTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCT
1 AAATCTGCTATGTCTTCGATTTGTTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCT
* *
106105379 TCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCAG
66 TCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCAA
* *
106105444 ATCTGTTATCTTGGATCTGTTTCGGTATGAGAACATCCGAAAGTC
131 ATCTGTTATCTTGGATCTGCTTCGGCATGAGAACATCCGAAAGTC
* * *
106105489 AAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACT
1 AAATCTGCTATGTCTTCGATTTGTTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCT
* * *
106105554 TTAGTATAAACATATGAAGGTTAGATCTGCTATGTGTCTG
66 TCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTG
106105594 ATTTGCTCCT
Statistics
Matches: 260, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
175 257 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (175 bp):
AAATCTGCTATGTCTTCGATTTGTTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCT
TCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCAA
ATCTGTTATCTTGGATCTGCTTCGGCATGAGAACATCCGAAAGTC
Found at i:106105597 original size:87 final size:86
Alignment explanation
Indices: 106105141--106105603 Score: 238
Period size: 87 Copynumber: 5.3 Consensus size: 86
106105131 TGAAAGCTAA
* * * * *
106105141 ATCTGCTGTGTCTTCGATTTGCTCATTGTGAACACAAGGATGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT-CTTT
106105206 AGTA-AAATCATCTGAAGGTTAG
65 AGTATAAA-CATCTGAAGGTTAG
* * * * ***
106105228 ATTTGCTATGT-ATC--TGCT-CTCCGTCG-AAA-TGGAG-ATGCCAAATCTGTTATCTTGGATC
1 ATCTGCTATGTCTTCGAT-TTGCTCC-TTGTAAACACAAGAATGCCAAATC----ATCTTGGATC
** ** * * * *
106105286 TGCTTCGGCGTGAGAACATCCGAAAGTCAA
60 T-CTTTAGTAT-A-AACATCTGAAGGTTAG
* * *
106105316 ATCTGCTATGTCTTCGATTTGTTCGTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT-CTTT
*
106105381 AGTATAAACATCTAAAGGTTAG
65 AGTATAAACATCTGAAGGTTAG
* * * *** *
106105403 ATCTGCTATGT-ATC--TGCT-CTCCATCG-AAA-TGGAG-ATGCCAGATCTGTTATCTTGGATC
1 ATCTGCTATGTCTTCGAT-TTGCTCC-TTGTAAACACAAGAATGCCAAATC----ATCTTGGATC
* * * * * *
106105461 TGTTTCGGTATGAGAACATCCGAAAGTCAA
60 TCTTT-AGTAT-A-AACATCTGAAGGTTAG
* *
106105491 ATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTT
1 ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT-CTTT
*
106105556 AGTATAAACATATGAAGGTTAG
65 AGTATAAACATCTGAAGGTTAG
*
106105578 ATCTGCTATGT-GTCTGATTTGCTCCT
1 ATCTGCTATGTCTTC-GATTTGCTCCT
106105604 CGTCGAAGAT
Statistics
Matches: 272, Mismatches: 70, Indels: 68
0.66 0.17 0.17
Matches are distributed among these distances:
82 19 0.07
83 4 0.01
84 12 0.04
85 8 0.03
86 38 0.14
87 63 0.23
88 44 0.16
89 39 0.14
90 9 0.03
91 13 0.05
92 4 0.01
93 19 0.07
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (86 bp):
ATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTCTTTA
GTATAAACATCTGAAGGTTAG
Found at i:106108241 original size:25 final size:25
Alignment explanation
Indices: 106108207--106108256 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
106108197 AGCCACTCGG
106108207 AGTCCCATGATGCATGCTTCATACT
1 AGTCCCATGATGCATGCTTCATACT
106108232 AGTCCCATGATGCATGCTTCATACT
1 AGTCCCATGATGCATGCTTCATACT
106108257 TGGCCATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (25 bp):
AGTCCCATGATGCATGCTTCATACT
Found at i:106113797 original size:15 final size:15
Alignment explanation
Indices: 106113755--106113804 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
106113745 ATAACTTTGA
**
106113755 ATGCAAATG-ATTCG
1 ATGCAAATGCATGAG
106113769 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
106113784 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
106113798 ATGCAAA
1 ATGCAAA
106113805 AAGGACATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 10 0.32
16 6 0.19
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:106117409 original size:3 final size:3
Alignment explanation
Indices: 106117396--106117474 Score: 149
Period size: 3 Copynumber: 26.0 Consensus size: 3
106117386 CAAATGTGAC
106117396 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106117442 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106117475 GTAGTAATAT
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 72 0.96
4 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:106117780 original size:6 final size:6
Alignment explanation
Indices: 106117769--106117801 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
106117759 AAAATATAAT
*
106117769 AAAATA AAAATA AAAA-A GAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
106117802 ACAGAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:106117792 original size:17 final size:17
Alignment explanation
Indices: 106117770--106117802 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
106117760 AAATATAATA
106117770 AAATAAAAATAAAAAAG
1 AAATAAAAATAAAAAAG
106117787 AAATAAAAATAAAAAA
1 AAATAAAAATAAAAAA
106117803 CAGAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAATAAAAATAAAAAAG
Found at i:106117801 original size:18 final size:18
Alignment explanation
Indices: 106117770--106117811 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
106117760 AAATATAATA
106117770 AAATAAAAATAAAAA-AG
1 AAATAAAAATAAAAACAG
106117787 AAATAAAAATAAAAAACAG
1 AAATAAAAAT-AAAAACAG
106117806 -AATAAA
1 AAATAAA
106117812 TATATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
18 11 0.48
19 2 0.09
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (18 bp):
AAATAAAAATAAAAACAG
Found at i:106118500 original size:3 final size:3
Alignment explanation
Indices: 106118492--106118612 Score: 115
Period size: 3 Copynumber: 39.7 Consensus size: 3
106118482 ATATATGTGG
* *
106118492 TAA TAA TAA T-A TAA -AA TAA TAA TATG TACA TAA AAA TACA T-A TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TA-A
*
106118538 TATA TGCA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
106118584 TAA TAA TAA TAA TAA TAA GAA TAA GAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
106118613 TCTACAATAA
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
2 8 0.08
3 78 0.78
4 14 0.14
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:106118729 original size:37 final size:37
Alignment explanation
Indices: 106118658--106118729 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
106118648 AAATATATAC
* *
106118658 ATATAAAATATTTACAATAATGATGTAAATAAACAAT
1 ATATAAAATATTTACAATAATCATATAAATAAACAAT
106118695 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
106118730 TTTAAATAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAT
Found at i:106120447 original size:54 final size:54
Alignment explanation
Indices: 106120369--106120665 Score: 507
Period size: 54 Copynumber: 5.6 Consensus size: 54
106120359 GACCCGAGGC
*
106120369 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120423 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120477 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120531 TCAACTCACCTCTCGC---A--A-TTGATTTTTGAAAAATAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120579 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
106120633 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
106120666 TTGAAACTTA
Statistics
Matches: 230, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
48 45 0.20
49 1 0.00
51 2 0.01
53 1 0.00
54 181 0.79
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
Done.