Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 365 of 444
Found at i:106120623 original size:102 final size:102
Alignment explanation
Indices: 106120369--106120651 Score: 467
Period size: 102 Copynumber: 2.7 Consensus size: 102
106120359 GACCCGAGGC
*
106120369 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCT
*
106120434 CTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
66 CTCGC---A--A-TTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120477 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCT
*
106120542 CTCGCAATTGATTTTTGAAAAATAGAAATTAAAAGGT
66 CTCGCAATTGATTTTTGAAAAACAGAAATTAAAAGGT
*
106120579 TCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCT
106120644 CTCGCAAT
66 CTCGCAAT
106120652 ATGAGTTGAT
Statistics
Matches: 169, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
102 99 0.59
103 1 0.01
105 1 0.01
108 68 0.40
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (102 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCT
CTCGCAATTGATTTTTGAAAAACAGAAATTAAAAGGT
Found at i:106120775 original size:72 final size:72
Alignment explanation
Indices: 106120692--106120910 Score: 330
Period size: 72 Copynumber: 3.0 Consensus size: 72
106120682 AAAGTTGATT
*
106120692 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
*
106120757 ATAGAAA
66 ACAGAAA
*
106120764 TTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
106120829 ACAGAAA
66 ACAGAAA
** * * ** *
106120836 TTGAAATTAAATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AA
*
106120901 AACAAAAA
65 AACAGAAA
106120909 TT
1 TT
106120911 AAAAGGCTTA
Statistics
Matches: 134, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 123 0.92
73 11 0.08
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
ACAGAAA
Found at i:106120941 original size:285 final size:273
Alignment explanation
Indices: 106120695--106121190 Score: 655
Period size: 280 Copynumber: 1.8 Consensus size: 273
106120685 GTTGATTTTG
* ** **
106120695 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGA-AAA
1 AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGACAAA
* * **
106120758 TAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-AT
66 CAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAT
* *
106120822 TTTGAAAA-C-AG-AAATTGAAATTAAATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
131 TTTGAAAAGCAAGAAAATTGAAAATAAATCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
*
106120884 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTT-AAGTCACCTCTCGCAATATGAGTCAATT
196 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGG-TTCAACTCACCTCTCGCAATATGAGTCAATT
106120948 TAAAACATAAACTA
260 TAAAACATAAACTA
* * *
106120962 AAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACA
1 AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TATTTTGACA
* * *
106121027 AACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
64 AACAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* **
106121092 TTTTTTGAAAAGCAGAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
128 TATTTTGAAAAGC--AAG--AAAATTGAAAATAAATCAGCGTGCCCTGAGGCTCAACTCACCTCT
* * *
106121157 CGCAATATGAGCTGATTTTCGAAAAACATAAATT
189 CGCAATATGAGTTGATTTTTGAAAAACAAAAATT
106121191 GAAGAAAACA
Statistics
Matches: 193, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
267 46 0.24
270 6 0.03
271 58 0.30
273 9 0.05
274 1 0.01
277 2 0.01
280 71 0.37
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (273 bp):
AAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGACAAA
CAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAT
TTTGAAAAGCAAGAAAATTGAAAATAAATCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTCAATTT
AAAACATAAACTA
Found at i:106121076 original size:76 final size:78
Alignment explanation
Indices: 106120950--106121175 Score: 323
Period size: 76 Copynumber: 2.9 Consensus size: 78
106120940 AGTCAATTTA
* * * *
106120950 AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
106121015 TTTTTTTTG-A-C
66 TTTTTTTTGAAGC
* *
106121026 AAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
106121091 -TTTTTTTGAAAAGC
66 TTTTTTTTG--AAGC
* *
106121105 AGAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 A-AA-CATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
106121170 GATTTT
64 GATTTT
106121176 CGAAAAACAT
Statistics
Matches: 133, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
75 8 0.06
76 59 0.44
78 1 0.01
79 2 0.02
80 2 0.02
81 58 0.44
82 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (78 bp):
AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTGAAGC
Found at i:106121200 original size:16 final size:16
Alignment explanation
Indices: 106121179--106121209 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106121169 TGATTTTCGA
*
106121179 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
106121195 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
106121210 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:106121264 original size:89 final size:88
Alignment explanation
Indices: 106121113--106121373 Score: 425
Period size: 89 Copynumber: 2.9 Consensus size: 88
106121103 GCAGAAGCAA
* *
106121113 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
106121178 AAAAACATAAATTGAAGAAAACAG
66 AAAAGCATAAATTGAA-AAAACAG
* * *
106121202 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
106121267 AAAAGCATAAATTG-AAAAACGG
66 AAAAGCATAAATTGAAAAAACAG
106121289 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
106121354 TGAAAAGCATAAATTGAAAA
64 TGAAAAGCATAAATTGAAAA
106121374 TACCTCAACG
Statistics
Matches: 159, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
87 62 0.39
88 1 0.01
89 93 0.58
90 3 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAGCATAAATTGAAAAAACAG
Found at i:106121475 original size:73 final size:73
Alignment explanation
Indices: 106121278--106121513 Score: 330
Period size: 73 Copynumber: 3.2 Consensus size: 73
106121268 AAAGCATAAA
*
106121278 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
106121343 GTTGATTTTT
66 GTTGA--TTT
* * * * * * **
106121353 TTGAAAAGCATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
106121418 GTTGAGTT
66 GTTGATTT
* *
106121426 TTGACAAACAGAAATT-AAAATTACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
106121490 AGTTGATTT
65 AGTTGATTT
106121499 TTGAAAAACAGAAAT
1 TTGAAAAACAGAAAT
106121514 AAAACATAAC
Statistics
Matches: 138, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
72 4 0.03
73 73 0.53
75 61 0.44
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:106123681 original size:8 final size:8
Alignment explanation
Indices: 106123668--106123730 Score: 56
Period size: 8 Copynumber: 7.5 Consensus size: 8
106123658 GCATTTGATT
106123668 TTTTTTTG
1 TTTTTTTG
*
106123676 TTTTTTTC
1 TTTTTTTG
*
106123684 TTGTCTTTTT
1 TT-T-TTTTG
106123694 TTCTTTTTG
1 TT-TTTTTG
106123703 TTTTTTTG
1 TTTTTTTG
106123711 TTTTTTT-
1 TTTTTTTG
*
106123718 TTCTTTTTC
1 TT-TTTTTG
106123727 TTTT
1 TTTT
106123731 CATGACTGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
7 2 0.04
8 29 0.62
9 9 0.19
10 7 0.15
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (8 bp):
TTTTTTTG
Found at i:106123692 original size:13 final size:12
Alignment explanation
Indices: 106123666--106123731 Score: 61
Period size: 11 Copynumber: 5.7 Consensus size: 12
106123656 TGGCATTTGA
106123666 TTTTTTT-TTG-
1 TTTTTTTCTTGT
106123676 TTTTTTTCTTGT
1 TTTTTTTCTTGT
106123688 CTTTTTTTCTT-T
1 -TTTTTTTCTTGT
106123700 TTGTTTTT-TTGTT
1 TT-TTTTTCTTG-T
106123713 TTTTTTTCTT-T
1 TTTTTTTCTTGT
*
106123724 TTCTTTTC
1 TTTTTTTC
106123732 ATGACTGTCG
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
10 7 0.15
11 15 0.31
12 11 0.23
13 15 0.31
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (12 bp):
TTTTTTTCTTGT
Found at i:106123706 original size:24 final size:23
Alignment explanation
Indices: 106123666--106123731 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 23
106123656 TGGCATTTGA
106123666 TTTTTTT-TTGTTTTTTTCTTGTC
1 TTTTTTTCTT-TTTTTTTCTTGTC
* *
106123689 TTTTTTTCTTTTTGTTTTTTTGTT
1 TTTTTTTCTTTTT-TTTTCTTGTC
106123713 TTTTTTTCTTTTTCTTTTC
1 TTTTTTTCTTTTT-TTTTC
106123732 ATGACTGTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 10 0.27
24 27 0.73
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (23 bp):
TTTTTTTCTTTTTTTTTCTTGTC
Found at i:106127632 original size:3 final size:3
Alignment explanation
Indices: 106127624--106127729 Score: 85
Period size: 3 Copynumber: 34.7 Consensus size: 3
106127614 ATATATGTGG
* *
106127624 TAA TAA TAA T-A TAA -AA TAA TAA TATG TACA TAA AAA TACA T-A TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TA-A
*
106127670 TATA TGCA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
106127716 TAA GAA TAA GAA TA
1 TAA TAA TAA TAA TA
106127730 TCTACAATAA
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
2 8 0.09
3 63 0.74
4 14 0.16
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:106127845 original size:37 final size:37
Alignment explanation
Indices: 106127774--106127845 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
106127764 AAATATATAC
* *
106127774 ATATAAAATATTTACAATAATGATGTAAATAAACAAT
1 ATATAAAATATTTACAATAATCATATAAATAAACAAT
106127811 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
106127846 TTTAAATAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAT
Found at i:106135404 original size:44 final size:43
Alignment explanation
Indices: 106135324--106135411 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 43
106135314 CCTTTTTTAC
* *
106135324 AATAGTGAGGTGCGAGAGGAAAGAGAGAGGTGGTGGGGGGTTGG
1 AATAGTGAGGTACGAGAGGAAAGAGAGAGGTAGT-GGGGGTTGG
*
106135368 AATAGTGAGG-ACTGAGAGGAAAGACGA-TGGTAGTGGGGGTTGG
1 AATAGTGAGGTAC-GAGAGGAAAGA-GAGAGGTAGTGGGGGTTGG
106135411 A
1 A
106135412 CACAACGGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
43 11 0.28
44 26 0.67
45 2 0.05
ACGTcount: A:0.30, C:0.03, G:0.50, T:0.17
Consensus pattern (43 bp):
AATAGTGAGGTACGAGAGGAAAGAGAGAGGTAGTGGGGGTTGG
Found at i:106138499 original size:50 final size:51
Alignment explanation
Indices: 106138439--106138549 Score: 179
Period size: 50 Copynumber: 2.2 Consensus size: 51
106138429 CCTAGGATGT
* *
106138439 CTTCGGCTACACTTATCTGATCAAGAACAAGTGA-AAGTGATAAGTGATAG
1 CTTCGGCTACACTTATCTGATCAAGAACAAATGACAAGTGAAAAGTGATAG
* *
106138489 CTTCGGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGGTAG
1 CTTCGGCTACACTTATCTGATCAAGAACAAATGACAAGTGAAAAGTGATAG
106138540 CTTCGGCTAC
1 CTTCGGCTAC
106138550 CTGATCAGTG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
50 32 0.57
51 24 0.43
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (51 bp):
CTTCGGCTACACTTATCTGATCAAGAACAAATGACAAGTGAAAAGTGATAG
Found at i:106138563 original size:31 final size:31
Alignment explanation
Indices: 106138525--106138641 Score: 207
Period size: 31 Copynumber: 3.8 Consensus size: 31
106138515 ACAAATGACA
106138525 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
106138556 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
106138587 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
106138618 AGTGAATAGTGGTAGCTTCGGCTA
1 AGTGAAAAGTGGTAGCTTCGGCTA
106138642 TAAGTGACAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:106142382 original size:17 final size:17
Alignment explanation
Indices: 106142360--106142393 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106142350 TTAATTTAAA
106142360 TAAATAAATTTCTCAAT
1 TAAATAAATTTCTCAAT
*
106142377 TAAATAATTTTCTCAAT
1 TAAATAAATTTCTCAAT
106142394 CCAATTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:106144687 original size:21 final size:22
Alignment explanation
Indices: 106144654--106144696 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
106144644 ATTTAAAAAC
* *
106144654 ATAAAAACAAATATTAAGACAA
1 ATAAAAACAAATACTAAAACAA
*
106144676 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATACTAAAACAA
106144697 TTCTTAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAAAAACAAATACTAAAACAA
Found at i:106146812 original size:13 final size:13
Alignment explanation
Indices: 106146793--106146830 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
106146783 TATTCCGTTC
*
106146793 TTTCTTTGTTCTTA
1 TTTCTTTATT-TTA
106146807 -TTCTTTATTTTA
1 TTTCTTTATTTTA
106146819 TTTCTTTATTTT
1 TTTCTTTATTTT
106146831 CTTTTATGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 19 0.86
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTCTTTATTTTA
Found at i:106157346 original size:20 final size:20
Alignment explanation
Indices: 106157313--106157350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
106157303 ACTAATTGTG
*
106157313 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
106157333 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
106157351 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:106165834 original size:20 final size:20
Alignment explanation
Indices: 106165811--106165850 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
106165801 TATTAAATTT
*
106165811 ATGATTTAAGGATTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
*
106165831 ATGAGTTAAGGTTTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
106165851 TAAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (20 bp):
ATGAGTTAAGGATTAGAGAA
Found at i:106167741 original size:2 final size:2
Alignment explanation
Indices: 106167734--106167764 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
106167724 TAGGCACACT
106167734 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106167765 TACTTTGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106176037 original size:6 final size:6
Alignment explanation
Indices: 106176029--106176070 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
106176019 TGGGGGACAT
* *
106176029 GGGCAT GGGCAC GGGCAT GGGCAC GGGCAC GGGCAC GGGCAC
1 GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC
106176071 ATGATCCATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.17, C:0.29, G:0.50, T:0.05
Consensus pattern (6 bp):
GGGCAC
Found at i:106176044 original size:12 final size:12
Alignment explanation
Indices: 106176029--106176069 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
106176019 TGGGGGACAT
106176029 GGGCATGGGCAC
1 GGGCATGGGCAC
106176041 GGGCATGGGCAC
1 GGGCATGGGCAC
*
106176053 GGGCACGGGCAC
1 GGGCATGGGCAC
106176065 GGGCA
1 GGGCA
106176070 CATGATCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.17, C:0.27, G:0.51, T:0.05
Consensus pattern (12 bp):
GGGCATGGGCAC
Found at i:106184977 original size:26 final size:26
Alignment explanation
Indices: 106184948--106185055 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
106184938 TGGTACAAAT
106184948 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106184974 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106185000 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106185026 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106185052 TGAT
1 TGAT
106185056 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106185571 original size:22 final size:22
Alignment explanation
Indices: 106185545--106185590 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
106185535 GATTGATTGG
106185545 TGATATACATGTTTAAATAACA
1 TGATATACATGTTTAAATAACA
106185567 TGATATACATGTTTAAATAACA
1 TGATATACATGTTTAAATAACA
106185589 TG
1 TG
106185591 CATGCAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (22 bp):
TGATATACATGTTTAAATAACA
Found at i:106186703 original size:27 final size:26
Alignment explanation
Indices: 106186672--106186807 Score: 130
Period size: 27 Copynumber: 5.1 Consensus size: 26
106186662 TGGAGGAAGC
*
106186672 GTCCTGGTGGCTATACCACAATTATCT
1 GTCCTGGTGGCTATGCCAC-ATTATCT
*
106186699 GTCCTAGTGGCTATGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAT-TATCT
* * * *
106186726 ATCCTGATGGCAATGGCACGATTATCT
1 GTCCTGGTGGCTATGCCAC-ATTATCT
*
106186753 GAT-CTGGTGGCTCTGCCACATATATCT
1 G-TCCTGGTGGCTATGCCACAT-TATCT
* * *
106186780 GTTCTGGTGGCTCTGCCACAATATCT
1 GTCCTGGTGGCTATGCCACATTATCT
106186806 GT
1 GT
106186808 ATCTGGTGAC
Statistics
Matches: 91, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
26 12 0.13
27 76 0.84
28 3 0.03
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (26 bp):
GTCCTGGTGGCTATGCCACATTATCT
Found at i:106186812 original size:54 final size:54
Alignment explanation
Indices: 106186673--106186815 Score: 155
Period size: 54 Copynumber: 2.6 Consensus size: 54
106186663 GGAGGAAGCG
* * *
106186673 TCCTGGTGGCTATACCACAATTATCTGT-CCTAGTGGCTATGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAA-TATCTGTATCTGGTGGCTATGCCACATATATCTA
* * * * * *
106186727 TCCTGATGGCAATGGCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCAC-AATATCTGTATCTGGTGGCTATGCCACATATATCTA
* *
106186781 TTCTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATATCTGTATCTGGTG
106186816 ACTTCATCAC
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
53 7 0.10
54 63 0.89
55 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATATCTGTATCTGGTGGCTATGCCACATATATCTA
Found at i:106189724 original size:43 final size:42
Alignment explanation
Indices: 106189675--106189822 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
106189665 CATCGAGATG
*
106189675 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-ATT-A
* *
106189719 -GATTACGTGTAAGACCGTGTCTGGGACATTGGCA-TGATTAA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATT-A
* * * * * *
106189760 TCGATTTCGTGTAAGACCCTGTCTGGGTCAATGGCATCGATATA
1 T-GATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT-TA
106189804 TGATTACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
106189823 ATTTGGGATA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 4 0.05
42 2 0.02
43 76 0.86
44 5 0.06
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGATTA
Found at i:106194890 original size:8 final size:8
Alignment explanation
Indices: 106194877--106194901 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
106194867 GGAATTTATT
106194877 TGTGAAAA
1 TGTGAAAA
106194885 TGTGAAAA
1 TGTGAAAA
106194893 TGTGAAAA
1 TGTGAAAA
106194901 T
1 T
106194902 ATGTGGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (8 bp):
TGTGAAAA
Found at i:106195734 original size:28 final size:29
Alignment explanation
Indices: 106195702--106195764 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
106195692 TTCTTTATAT
*
106195702 ACATAAACATA-TAATATAAGTA-AAAATA
1 ACATAAACATATTAA-ACAAGTATAAAATA
* *
106195730 ACATACATATATTAAACAAGTATAAAATA
1 ACATAAACATATTAAACAAGTATAAAATA
106195759 A-ATAAA
1 ACATAAA
106195765 AAAAGAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.25
Consensus pattern (29 bp):
ACATAAACATATTAAACAAGTATAAAATA
Found at i:106196583 original size:3 final size:3
Alignment explanation
Indices: 106196301--106196564 Score: 159
Period size: 3 Copynumber: 89.0 Consensus size: 3
106196291 TTTTATTCAA
* ** *
106196301 ATT ATT ACT ATT ATT ATT ATT ATT CCT ATGT -GT ATT ATT ATT AGTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT
* * * *
106196347 A-T ATG ATT GTT ATT -TCT ACT ACT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
106196391 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT A-T ATT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
106196438 AGT ATT ATT GTC AGT GTC AGT ATT ATT -TT CGTT ATCT -TT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT
* * * * *
106196482 TTT ATT TTT ATT ATT -TAT ATT ATT GTT ATT ATT TTT ATT ACT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
106196527 ATT GTT A-T ATT ATC GTT ATT ATT CTT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
106196565 GTTAATGCAA
Statistics
Matches: 195, Mismatches: 52, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
2 14 0.07
3 173 0.89
4 8 0.04
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:106196880 original size:17 final size:18
Alignment explanation
Indices: 106196850--106196886 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
106196840 GTATTTCTAG
106196850 TACTATATTACA-TTTAT
1 TACTATATTACATTTTAT
106196867 TACT-TATTAGCATTTTAT
1 TACTATATTA-CATTTTAT
106196885 TA
1 TA
106196887 TTACTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 6 0.33
18 7 0.39
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.54
Consensus pattern (18 bp):
TACTATATTACATTTTAT
Found at i:106197060 original size:27 final size:30
Alignment explanation
Indices: 106197028--106197088 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
106197018 TCAAGTATGC
* *
106197028 ACGTTTT-AATAT-TATATCTTTTCATA-T
1 ACGTTTTGAATATATATATATTTTAATACT
*
106197055 ACGTTTTGTATATATATATATTTTAATACT
1 ACGTTTTGAATATATATATATTTTAATACT
106197085 ACGT
1 ACGT
106197089 ATGTACTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.25
28 4 0.14
29 12 0.43
30 5 0.18
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (30 bp):
ACGTTTTGAATATATATATATTTTAATACT
Found at i:106197201 original size:2 final size:2
Alignment explanation
Indices: 106197194--106197223 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
106197184 AATAAACATC
106197194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106197224 TTTCTTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106198602 original size:43 final size:43
Alignment explanation
Indices: 106198507--106198620 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
106198497 ATCGAGATGT
* * * *
106198507 GATTACATATAAGACCATGTCTGGGACATTGGCATTATATTGA
1 GATTACGTGTAAGACCATGTCTAGGACATTGGCATTATAATGA
* *
106198550 GATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTTAAT-C
1 GATTACGTGTAAGACCATGTCTAGGACATTGGCATT-ATAATGA
* *
106198593 GATTTCGTGTAAGACCCTGTCTAGGACA
1 GATTACGTGTAAGACCATGTCTAGGACA
106198621 GTGACATCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 59 0.95
44 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGGACATTGGCATTATAATGA
Found at i:106199651 original size:13 final size:15
Alignment explanation
Indices: 106199616--106199649 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
106199606 GCCGTGTGCG
106199616 ACACACGGTCATGTT
1 ACACACGGTCATGTT
*
106199631 ACACACGGTCATTTT
1 ACACACGGTCATGTT
106199646 ACAC
1 ACAC
106199650 GGCCGTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (15 bp):
ACACACGGTCATGTT
Found at i:106208274 original size:68 final size:70
Alignment explanation
Indices: 106208202--106208399 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
106208192 ACACCCTGTA
* * * *
106208202 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
106208264 ATAAAT
65 ATAAAT
*
106208270 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
106208335 ATAAAT
65 ATAAAT
*
106208341 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
106208400 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:106208313 original size:41 final size:41
Alignment explanation
Indices: 106208268--106208385 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
106208258 TGAAAGATAA
106208268 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
106208309 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106208339 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106208380 ATGTAG
1 ATGTAG
106208386 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:106208325 original size:71 final size:71
Alignment explanation
Indices: 106208236--106208399 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
106208226 GAGATGTATC
106208236 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106208301 AGGACA
66 AGGACA
106208307 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106208372 AGGACA
66 AGGACA
106208378 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106208400 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106215339 original size:68 final size:70
Alignment explanation
Indices: 106215267--106215464 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
106215257 ACACCCTGTA
* * * *
106215267 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
106215329 ATAAAT
65 ATAAAT
*
106215335 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
106215400 ATAAAT
65 ATAAAT
*
106215406 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
106215465 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:106215378 original size:41 final size:41
Alignment explanation
Indices: 106215333--106215450 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
106215323 TGAAAGATAA
106215333 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
106215374 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106215404 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
106215445 ATGTAG
1 ATGTAG
106215451 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:106215390 original size:71 final size:71
Alignment explanation
Indices: 106215301--106215464 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
106215291 GAGATGTATC
106215301 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106215366 AGGACA
66 AGGACA
106215372 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106215437 AGGACA
66 AGGACA
106215443 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106215465 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106216703 original size:100 final size:100
Alignment explanation
Indices: 106216528--106216712 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 100
106216518 ATTATTATTG
* * *
106216528 CTTAAGAATACATCGAACCTTTTAACGCGAAGAGAGATGACAACCAAGCACCCCACCCCGGTTAC
1 CTTAAGAACACATCGAACCTTTTAACACGAAGAAAGATGACAACCAAGCACCCCACCCCGGTTAC
*
106216593 TTAACTCAACATACTCCTAATTTATTTATATTTTT
66 TTAACCCAACATACTCCTAATTTATTTATATTTTT
* * * *
106216628 CTTAAGAACATATCGAACCTTTTGACACGAAGAAAGATGACAGCCAAGCACCCCACCTCGGTTAC
1 CTTAAGAACACATCGAACCTTTTAACACGAAGAAAGATGACAACCAAGCACCCCACCCCGGTTAC
106216693 TTAACCCAACATACTCCTAA
66 TTAACCCAACATACTCCTAA
106216713 AAAATTTATT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (100 bp):
CTTAAGAACACATCGAACCTTTTAACACGAAGAAAGATGACAACCAAGCACCCCACCCCGGTTAC
TTAACCCAACATACTCCTAATTTATTTATATTTTT
Found at i:106217833 original size:12 final size:11
Alignment explanation
Indices: 106217825--106217885 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 11
106217815 AAAATAAAGT
106217825 AATAAATAATAA
1 AATAAATAAT-A
106217837 AATAAAATAATA
1 AAT-AAATAATA
*
106217849 AAT-ACTAATAA
1 AATAAATAAT-A
*
106217860 AATGAAATAAAA
1 AAT-AAATAATA
106217872 TAATAAATAATA
1 -AATAAATAATA
106217884 AA
1 AA
106217886 AATTAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.12
11 6 0.15
12 15 0.38
13 14 0.35
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (11 bp):
AATAAATAATA
Found at i:106217846 original size:13 final size:13
Alignment explanation
Indices: 106217828--106217878 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
106217818 ATAAAGTAAT
106217828 AAATAATAAAATA
1 AAATAATAAAATA
106217841 AAATAATAAATACTA
1 AAATAATAAA-A-TA
*
106217856 ATAA-AATGAAATA
1 A-AATAATAAAATA
106217869 AAATAATAAA
1 AAATAATAAA
106217879 TAATAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 2 0.06
13 18 0.56
14 2 0.06
15 8 0.25
16 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:106217861 original size:23 final size:20
Alignment explanation
Indices: 106217815--106217878 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
106217805 TCAATATCCA
*
106217815 AAAATAAAGTAATAAATAAT
1 AAAATAAAATAATAAATAAT
*
106217835 AAAATAAAATAATAAATACT
1 AAAATAAAATAATAAATAAT
106217855 --AATAAAATGAAATAAAATAAT
1 AAAATAAAAT--AAT-AAATAAT
106217876 AAA
1 AAA
106217879 TAATAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 8 0.22
20 21 0.58
21 6 0.17
23 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAATAAAATAATAAATAAT
Found at i:106217883 original size:10 final size:10
Alignment explanation
Indices: 106217824--106217888 Score: 50
Period size: 10 Copynumber: 6.8 Consensus size: 10
106217814 AAAAATAAAG
106217824 TAATAAATAA
1 TAATAAATAA
*
106217834 TAA-AATAAAA
1 TAATAA-ATAA
*
106217844 TAATAAATAC
1 TAATAAATAA
*
106217854 TAATAAAATGA
1 TAAT-AAATAA
106217865 -AAT-AA-AA
1 TAATAAATAA
106217872 TAATAAATAA
1 TAATAAATAA
106217882 TAA-AAAT
1 TAATAAAT
106217889 TAAGAAAAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
7 1 0.02
8 5 0.12
9 8 0.19
10 23 0.53
11 6 0.14
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (10 bp):
TAATAAATAA
Found at i:106217896 original size:25 final size:26
Alignment explanation
Indices: 106217817--106217911 Score: 75
Period size: 28 Copynumber: 3.5 Consensus size: 26
106217807 AATATCCAAA
* *
106217817 AATAAAGTAATAAATAATAAAATAAAAT
1 AATAAA-TAATAAA-AATGAAAGAAAAT
* *
106217845 AATAAATACTAATAAAATGAAATAAAAT
1 AATAAATAAT-A-AAAATGAAAGAAAAT
*
106217873 AATAAATAATAAAAAT-TAAGAAAAGT
1 AATAAATAATAAAAATGAAAGAAAA-T
* *
106217899 AAAAAAAAATAAA
1 AATAAATAATAAA
106217912 TGTTGGGTTG
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
25 6 0.11
26 17 0.30
27 4 0.07
28 28 0.49
29 2 0.04
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.22
Consensus pattern (26 bp):
AATAAATAATAAAAATGAAAGAAAAT
Found at i:106224545 original size:48 final size:47
Alignment explanation
Indices: 106224320--106224622 Score: 225
Period size: 48 Copynumber: 6.3 Consensus size: 47
106224310 TATGTTCTAA
* * * * *
106224320 ACATGGTCTTACACTGGCTCACATTTCGAGGCCGATGCAATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCA-TACAATGCCGATGCCATGTCCCAG
* * * ** * *
106224368 ACATGGTCTTACACTAGCTCTCGTCTCAATATCAATGCCATGTCCTAG
1 ACATGGTCTTACACTGGCTCTCAT-ACAATGCCGATGCCATGTCCCAG
* * *
106224416 AAATGGTCTTACGAC-GGCTCTCATA-AGGAGGCCGATGCCATGCCCCAG
1 ACATGGTCTTAC-ACTGGCTCTCATACA--ATGCCGATGCCATGTCCCAG
* * * * * * *
106224464 ACATAGTCTTACTCTAGCGCACATATCAATGCCGATACTATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCATA-CAATGCCGATGCCATGTCCCAG
* * *
106224512 ACATGGTCTTACACTGGCTCTCACTACATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTCA-TACAATGCCGATGCCATGTCCCAG
* * * * * *
106224560 ACATGGTCTTACATTGGCTCTCATATC-GTGGCTGATGCCATATTCCAA
1 ACATGGTCTTACACTGGCTCTCATA-CAAT-GCCGATGCCATGTCCCAG
106224608 ACATGGTCTTACACT
1 ACATGGTCTTACACT
106224623 AGCACACATA
Statistics
Matches: 200, Mismatches: 45, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
46 1 0.00
47 5 0.03
48 189 0.94
49 4 0.02
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ACATGGTCTTACACTGGCTCTCATACAATGCCGATGCCATGTCCCAG
Found at i:106224585 original size:96 final size:94
Alignment explanation
Indices: 106224320--106224586 Score: 250
Period size: 96 Copynumber: 2.8 Consensus size: 94
106224310 TATGTTCTAA
* * * *
106224320 ACATGGTCTTACACTGGCTCACATTTCGAGGCCGATGCAATGTCCCAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTGGCTCTCA-TAC-AGGCCGATGCCATGTCCCAGACATGGTCTTACATTAG
* * * * *
106224385 CTCTCGTCTCAATATCAATGCCATGTCCTAG
64 CTCTCATATCAATACCAATACCATGTCCCAG
* * * *
106224416 AAATGGTCTTACGAC-GGCTCTCATAAGGAGGCCGATGCCATGCCCCAGACATAGTCTTAC-TCT
1 ACATGGTCTTAC-ACTGGCTCTCAT-A-CAGGCCGATGCCATGTCCCAGACATGGTCTTACAT-T
* * * * *
106224479 AGCGCACATATCAATGCCGATACTATGTCCCAG
62 AGCTCTCATATCAATACCAATACCATGTCCCAG
* * * *
106224512 ACATGGTCTTACACTGGCTCTCACTACATTGCCGATGCCATGTTCCAAACATGGTCTTACATTGG
1 ACATGGTCTTACACTGGCTCTCA-TACA-GGCCGATGCCATGTCCCAGACATGGTCTTACATTAG
106224577 CTCTCATATC
64 CTCTCATATC
106224587 GTGGCTGATG
Statistics
Matches: 135, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
95 4 0.03
96 127 0.94
97 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
ACATGGTCTTACACTGGCTCTCATACAGGCCGATGCCATGTCCCAGACATGGTCTTACATTAGCT
CTCATATCAATACCAATACCATGTCCCAG
Found at i:106224597 original size:144 final size:144
Alignment explanation
Indices: 106224318--106224635 Score: 338
Period size: 144 Copynumber: 2.2 Consensus size: 144
106224308 GCTATGTTCT
* * * * * * *
106224318 AAACATGGTCTTACACTGGCTCACATTTCGAGGCCGATGCAATGTCCCAGACATGGTCTTACACT
1 AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCTTACACT
* * *
106224383 AGCTCTCGTCTCAATATCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAAGGAGGC
66 AGCTCTCGACTCAATACCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAACGAGGC
*
106224448 CGATGCCATGCCCC
131 CGATGCCATACCCC
* * * *
106224462 AGACATAGTCTTACTCTAGCGCACATATCAATGCCGATACTATGTCCCAGACATGGTCTTACACT
1 AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCTTACACT
* * * * * *
106224527 GGCTCTC-ACTACATTGCCGATGCCATGTTCC-A-AACATGGTCTTAC-ATTGGCTCTCATATCG
66 AGCTCTCGACT-CAATACCAATGCCATG-TCCTAGAA-ATGGTCTTACGA-CGGCTCTCATAACG
* * **
106224588 TGGCTGATGCCATATTCC
127 AGGCCGATGCCATACCCC
*
106224606 AAACATGGTCTTACACTAGCACACATATCA
1 AAACATAGTCTTACACTAGCACACATATCA
106224636 CCAAAATGTC
Statistics
Matches: 142, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
143 5 0.04
144 134 0.94
145 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (144 bp):
AAACATAGTCTTACACTAGCACACATATCAATGCCGATACAATGTCCCAGACATGGTCTTACACT
AGCTCTCGACTCAATACCAATGCCATGTCCTAGAAATGGTCTTACGACGGCTCTCATAACGAGGC
CGATGCCATACCCC
Found at i:106226443 original size:10 final size:10
Alignment explanation
Indices: 106226429--106226479 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
106226419 GAAATGACCT
*
106226429 TTTTTTATATT
1 TTTTTTATA-A
106226440 TTTTTTATGAA
1 TTTTTTAT-AA
*
106226451 ATTTTTATAA
1 TTTTTTATAA
*
106226461 TTTTTAATAA
1 TTTTTTATAA
106226471 TTTTTTATA
1 TTTTTTATA
106226480 GTTTAAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
10 18 0.53
11 15 0.44
12 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:106226765 original size:7 final size:6
Alignment explanation
Indices: 106226730--106226790 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
106226720 CTTTTATACT
* * *
106226730 ATTAAA CTTAAA ATT-AA ATCTAAA ATTAAA ATTTAAA ACTAAT ATCTAAA
1 ATTAAA ATTAAA ATTAAA AT-TAAA ATTAAA A-TTAAA ATTAAA AT-TAAA
*
106226780 ATTAAA TTTAA
1 ATTAAA ATTAA
106226791 GTTTTCAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 4 0.09
6 25 0.57
7 15 0.34
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTAAA
Found at i:106226767 original size:25 final size:25
Alignment explanation
Indices: 106226730--106226790 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
106226720 CTTTTATACT
* *
106226730 ATTAAACTTAAAATTAA-ATCTAAA
1 ATTAAATTTAAAACTAATATCTAAA
106226754 ATTAAAATTTAAAACTAATATCTAAA
1 ATT-AAATTTAAAACTAATATCTAAA
106226780 ATTAAATTTAA
1 ATTAAATTTAA
106226791 GTTTTCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 3 0.09
25 20 0.61
26 10 0.30
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (25 bp):
ATTAAATTTAAAACTAATATCTAAA
Found at i:106226784 original size:19 final size:18
Alignment explanation
Indices: 106226732--106226785 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
106226722 TTTATACTAT
* *
106226732 TAAACTTAAAATTAAATC
1 TAAAATTAAAATTAAAAC
106226750 TAAAATTAAAATTTAAAAC
1 TAAAATTAAAA-TTAAAAC
*
106226769 TAATATCTAAAATTAAA
1 TAAAAT-TAAAATTAAA
106226786 TTTAAGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.32
19 16 0.52
20 5 0.16
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATTAAAATTAAAAC
Found at i:106230072 original size:2 final size:2
Alignment explanation
Indices: 106230065--106230093 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106230055 TTTATAGTAA
106230065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106230094 CCATCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106230467 original size:48 final size:48
Alignment explanation
Indices: 106230358--106230455 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
106230348 TAAAATAGAT
106230358 AACTAACACCTGAAGTTCCCTATTCAGAGATGAATGTATTTTTATAGG
1 AACTAACACCTGAAGTTCCCTATTCAGAGATGAATGTATTTTTATAGG
106230406 AACTAACACCTGAAGTTCCCTATTCAGAGATGAATGTATTTTTATAGG
1 AACTAACACCTGAAGTTCCCTATTCAGAGATGAATGTATTTTTATAGG
106230454 AA
1 AA
106230456 TAGCCAGCTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (48 bp):
AACTAACACCTGAAGTTCCCTATTCAGAGATGAATGTATTTTTATAGG
Found at i:106233836 original size:13 final size:13
Alignment explanation
Indices: 106233816--106233849 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
106233806 AATAAATACT
*
106233816 AATTAATTAATTA
1 AATTAATTAACTA
*
106233829 ATTTAATTAACTA
1 AATTAATTAACTA
106233842 AATTAATT
1 AATTAATT
106233850 TCTTAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTAACTA
Found at i:106234779 original size:26 final size:26
Alignment explanation
Indices: 106234742--106234877 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
106234732 TGATACAAAT
* *
106234742 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106234768 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
106234794 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106234820 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106234846 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
106234872 TGATAA
1 TGATAA
106234878 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:106236562 original size:93 final size:93
Alignment explanation
Indices: 106236450--106236621 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106236440 GCCCATAAGT
* *
106236450 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106236515 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
106236543 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106236608 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
106236622 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:106236617 original size:46 final size:46
Alignment explanation
Indices: 106236442--106236617 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106236432 TGTAACCCGC
* * *
106236442 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
106236488 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
106236538 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
106236581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
106236618 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:106239687 original size:137 final size:137
Alignment explanation
Indices: 106239441--106239727 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
106239431 GAGTAGTCTC
106239441 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
106239506 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTCGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTCGCCCAGTACC
106239571 ACTGTTA
131 ACTGTTA
*
106239578 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGTCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
106239643 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTCGCCCAGTACC
106239708 ACTGTTA
131 ACTGTTA
**
106239715 CCTGAATGGGCTT
1 CCCAAATGGGCTT
106239728 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTCGCCCAGTACC
ACTGTTA
Found at i:106243997 original size:35 final size:35
Alignment explanation
Indices: 106243918--106244082 Score: 188
Period size: 35 Copynumber: 4.7 Consensus size: 35
106243908 TCCTTATTGA
* * * *
106243918 AATACCATGCCTACATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
** * **
106243953 AATGTCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
106243988 AATACCATACCTACGCTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
106244023 AATACCATACCTACGTTTCACAATTTAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
106244058 GATACCATACCTACGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
106244083 TTGCCATGGA
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
34 3 0.03
35 106 0.97
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:106249335 original size:14 final size:14
Alignment explanation
Indices: 106249316--106249343 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106249306 TTTCTCACTT
106249316 GCTATACATGAGGC
1 GCTATACATGAGGC
106249330 GCTATACATGAGGC
1 GCTATACATGAGGC
106249344 CATTAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (14 bp):
GCTATACATGAGGC
Found at i:106255122 original size:3 final size:3
Alignment explanation
Indices: 106255114--106255139 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
106255104 ATCACTTGCG
106255114 CCT CCT CCT CCT CCT CCT CCT CCT CC
1 CCT CCT CCT CCT CCT CCT CCT CCT CC
106255140 CCAAATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (3 bp):
CCT
Found at i:106257286 original size:13 final size:13
Alignment explanation
Indices: 106257268--106257298 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
106257258 CAATATATTT
106257268 ATTAATTAAAAAC
1 ATTAATTAAAAAC
*
106257281 ATTAATTAAAAAG
1 ATTAATTAAAAAC
106257294 ATTAA
1 ATTAA
106257299 AAAAAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:106259056 original size:26 final size:26
Alignment explanation
Indices: 106259017--106259152 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
106259007 TGATACAAAT
* *
106259017 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106259043 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106259069 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106259095 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106259121 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106259147 TGATAA
1 TGATAA
106259153 GAATATCATG
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106263369 original size:22 final size:22
Alignment explanation
Indices: 106263343--106263401 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
106263333 ATATCCAAAC
*
106263343 AATAACAACAAAATAATAGCAA
1 AATAACAACGAAATAATAGCAA
* * **
106263365 TATAATAACGAAATTGTAGCAA
1 AATAACAACGAAATAATAGCAA
106263387 AATAACAACGAAATA
1 AATAACAACGAAATA
106263402 GCAACGAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.19
Consensus pattern (22 bp):
AATAACAACGAAATAATAGCAA
Found at i:106265890 original size:21 final size:21
Alignment explanation
Indices: 106265864--106265904 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
106265854 ATCTGCTCAA
* *
106265864 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
106265885 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
106265905 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:106269515 original size:6 final size:6
Alignment explanation
Indices: 106269506--106269555 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
106269496 TTTATTTTAT
* *
106269506 TTAATA TTAATA TAATTATA TTTAT- TTAATA TTAATA TTAATA TTAATA
1 TTAATA TTAATA T--TAATA TTAATA TTAATA TTAATA TTAATA TTAATA
106269555 T
1 T
106269556 AAAATTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 4 0.10
6 30 0.77
8 5 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTAATA
Found at i:106269530 original size:25 final size:24
Alignment explanation
Indices: 106269497--106269543 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
106269487 GAGGAGATTT
106269497 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
106269521 TTATATTTATTTAATATTAATAT
1 TTAT-TTTATTTAATATTAATAT
106269544 TAATATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:106271327 original size:32 final size:32
Alignment explanation
Indices: 106271255--106271316 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
106271245 GAAATAAAGC
106271255 TCCTAAAAACAAAATCAGGAAACCTAAACAAA
1 TCCTAAAAACAAAATCAGGAAACCTAAACAAA
*
106271287 TCCTAAAAACAAAATCAGGAAATCTAAACA
1 TCCTAAAAACAAAATCAGGAAACCTAAACA
106271317 GACCTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.58, C:0.21, G:0.06, T:0.15
Consensus pattern (32 bp):
TCCTAAAAACAAAATCAGGAAACCTAAACAAA
Found at i:106280712 original size:13 final size:13
Alignment explanation
Indices: 106280696--106280721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106280686 ATGATACATA
106280696 AATTAAAATTAAG
1 AATTAAAATTAAG
106280709 AATTAAAATTAAG
1 AATTAAAATTAAG
106280722 TCATTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AATTAAAATTAAG
Found at i:106281912 original size:18 final size:16
Alignment explanation
Indices: 106281889--106281950 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 16
106281879 TCAGTAGCAT
106281889 TCAGTTACTCTATAACAG
1 TCAGTTA-TC-ATAACAG
106281907 TCAGTTATACAATAACAG
1 TCAGTTAT-C-ATAACAG
*
106281925 TCATTTATTCAGTAACAG
1 TCAGTTA-TCA-TAACAG
*
106281943 TCAATTAT
1 TCAGTTAT
106281951 TCCGTAGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.08
18 34 0.89
19 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (16 bp):
TCAGTTATCATAACAG
Found at i:106281951 original size:18 final size:18
Alignment explanation
Indices: 106281900--106281952 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
106281890 CAGTTACTCT
* *
106281900 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
*
106281918 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
*
106281936 GTAACAGTCAATTATTC
1 ATAACAGTCAATTATTC
106281953 CGTAGCAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:106282109 original size:6 final size:6
Alignment explanation
Indices: 106282094--106282127 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
106282084 CACCGCAACG
*
106282094 GTAA-A GTAACA GTAACA GTAACA GTCACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
106282128 GGTACACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:106285893 original size:21 final size:22
Alignment explanation
Indices: 106285863--106285905 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
106285853 ATTATATAAT
*
106285863 TCGGGTTGGGCCGGGC-CGGGC
1 TCGGGCTGGGCCGGGCTCGGGC
106285884 TCGGGCTGGGCCGGGCTCGGGC
1 TCGGGCTGGGCCGGGCTCGGGC
106285906 CAAAAAAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.00, C:0.30, G:0.56, T:0.14
Consensus pattern (22 bp):
TCGGGCTGGGCCGGGCTCGGGC
Found at i:106285894 original size:16 final size:16
Alignment explanation
Indices: 106285870--106285906 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
106285860 AATTCGGGTT
106285870 GGGCCGGGCCGGGCTC
1 GGGCCGGGCCGGGCTC
*
106285886 GGGCTGGGCCGGGCTC
1 GGGCCGGGCCGGGCTC
106285902 GGGCC
1 GGGCC
106285907 AAAAAAACGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.35, G:0.57, T:0.08
Consensus pattern (16 bp):
GGGCCGGGCCGGGCTC
Found at i:106285906 original size:11 final size:11
Alignment explanation
Indices: 106285870--106285906 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
106285860 AATTCGGGTT
106285870 GGGCCGGGC-C
1 GGGCCGGGCTC
106285880 GGGCTCGGGCT-
1 GGGC-CGGGCTC
106285891 GGGCCGGGCTC
1 GGGCCGGGCTC
106285902 GGGCC
1 GGGCC
106285907 AAAAAAACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.00, C:0.35, G:0.57, T:0.08
Consensus pattern (11 bp):
GGGCCGGGCTC
Found at i:106291568 original size:35 final size:36
Alignment explanation
Indices: 106291529--106291610 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 36
106291519 AATCTCATAT
106291529 TATTTTACA-TATAATTCCTTTTTAATTTATTCTTA
1 TATTTTACAGTATAATTCCTTTTTAATTTATTCTTA
*
106291564 TATTTTATTATATGTATAATTCCTTTTTAATTTATTCTTA
1 TA--TT-TTACA-GTATAATTCCTTTTTAATTTATTCTTA
106291604 TATTTTA
1 TATTTTA
106291611 TTATATGATC
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
35 2 0.05
37 5 0.12
38 6 0.15
40 28 0.68
ACGTcount: A:0.28, C:0.09, G:0.01, T:0.62
Consensus pattern (36 bp):
TATTTTACAGTATAATTCCTTTTTAATTTATTCTTA
Found at i:106291582 original size:40 final size:40
Alignment explanation
Indices: 106291538--106291617 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
106291528 TTATTTTACA
106291538 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
106291578 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
106291618 ATCCTACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (40 bp):
TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
Found at i:106292836 original size:127 final size:130
Alignment explanation
Indices: 106292499--106292837 Score: 470
Period size: 131 Copynumber: 2.6 Consensus size: 130
106292489 TAACTATTTA
*
106292499 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * **
106292563 GTGCTGGGTTGCAATTTCCCGCTTGTTCGAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
65 GTGCTGGGTTGCGATTTCCCGCTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCACAT
106292628 C
130 C
* *
106292629 TTTAAAAATTCTTCAAAACGAGGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* *
106292694 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCACAT
65 GTGCTGGGTTGCGATTTCCCGCTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCACAT
106292759 -
130 C
** * * * *
106292759 TTTCTAAATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATCCGGGGAATCGTGCCCTACCG
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
*
106292822 TGCTGGGTTTCGATTT
66 TGCTGGGTTGCGATTT
106292838 TTCTTTGGAC
Statistics
Matches: 187, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
127 55 0.29
128 5 0.03
129 3 0.02
130 50 0.27
131 74 0.40
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (130 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCCCGCTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCACATC
Found at i:106304448 original size:89 final size:89
Alignment explanation
Indices: 106304330--106304982 Score: 854
Period size: 89 Copynumber: 7.4 Consensus size: 89
106304320 TGGTGAATTC
106304330 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
* *
106304395 TAGCAGGGTAACAGGCCAAAGATT
66 TAGTAGGGTAACAGGCCGAAGATT
* * * *
106304419 ACAAATCTTGTCTCCCTGAAGTTGTAGTGGAATAGATCGAAGAAAGCAAGCCTTAACCCTCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
*
106304484 TAGTAGGGTAACAAGCCGAAGATT
66 TAGTAGGGTAACAGGCCGAAGATT
* * * ** **
106304508 ACAGATCTTGTCTCTCTGAAGTCGCAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
106304573 TAGTAGGGTAACAGGCCGAAGATT
66 TAGTAGGGTAACAGGCCGAAGATT
*
106304597 GA-AGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGAAAGCAAGCCTTAACCCCCTAA
1 -ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAA
* *
106304661 GTAGTAGGGTAATAGGCTGAAGATT
65 GTAGTAGGGTAACAGGCCGAAGATT
* * *
106304686 GCAGATCTTGTCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-AAGCAAGCCTTAACCCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
*
106304750 TAGTAGGGTAACAGGCTGAAGATT
66 TAGTAGGGTAACAGGCCGAAGATT
* * * * ** **
106304774 ACAAATTTTGTCTCCCTGAAGTTTCAGTGGAACAGATCAAAGACGGTGAGCCTTAA-CCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
**
106304838 TAGTAGGGTAACAGGTTG-A-ATT
66 TAGTAGGGTAACAGGCCGAAGATT
* * ** *
106304860 GCAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACAGTGAGCCTTAACTCCCTAAG
1 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
* *
106304925 TGGTAGGGTAACAGGCTG-A-ATT
66 TAGTAGGGTAACAGGCCGAAGATT
* * * *
106304947 AC-GAGTCTTATCTCCCTGAAGTGGCAGAGGAGCAGA
1 ACAGA-TCTTGTCTCCCTGAAGTTGCAGTGGAACAGA
106304983 CTAAAGATAA
Statistics
Matches: 502, Mismatches: 57, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
86 55 0.11
87 56 0.11
88 106 0.21
89 284 0.57
90 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (89 bp):
ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGAAAGCAAGCCTTAACCCCCTAAG
TAGTAGGGTAACAGGCCGAAGATT
Found at i:106306678 original size:40 final size:40
Alignment explanation
Indices: 106306634--106306713 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
106306624 ATTTTATACA
106306634 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
106306674 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
1 TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
106306714 ATCCTACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (40 bp):
TATAATTCCTTTTTAATTTATTCTTATATTTTATTATATG
Found at i:106306896 original size:2 final size:2
Alignment explanation
Indices: 106306889--106306921 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
106306879 TTTAATCTTT
106306889 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106306922 TATCATTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106306970 original size:2 final size:2
Alignment explanation
Indices: 106306963--106306995 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
106306953 ACTTTTCAAT
106306963 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106306996 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106307978 original size:127 final size:130
Alignment explanation
Indices: 106307640--106307979 Score: 418
Period size: 131 Copynumber: 2.6 Consensus size: 130
106307630 TAACTATTCA
* ** *
106307640 TTTAAAAATTCTTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCGGAGAATCGTGCCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCAATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * *
106307705 GTGCTGGGTTGCAATTTTTCGCTTGTTCGAAATAATCAAATATTCATTTAGAATTTCACTCATGT
65 GTGCTGGGTTGCGATTTCTCACTTGTTCAAAATAATCAAATATTCACTTAGAATTTCACTCACGT
106307770 C
130 C
* * *
106307771 TTTAAAAATTCTTCAAAACGAGGGTAATGTTCAATGTTTGGCAGTTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTT-AAAACGAAGGCAATGTTCAATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * *
106307836 GTGCTGGGTTGCGATTTC-CTATTTGTTCAAAATAATCGAATATTCCCTTAGAATTTCACTCACG
65 GTGCTGGGTTGCGATTTCTC-ACTTGTTCAAAATAATCAAATATTCACTTAGAATTTCACTCACG
106307900 T-
129 TC
** * * * *
106307901 TTTCTAAATTC-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATCCGGGGAATCGTGCCCTACCA
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTCAATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
*
106307964 TGCTGGGTTTCGATTT
66 TGCTGGGTTGCGATTT
106307980 TTCGTTGGAC
Statistics
Matches: 181, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
127 54 0.30
128 5 0.03
129 1 0.01
130 12 0.07
131 109 0.60
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (130 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCAATGTTTGGCAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCTCACTTGTTCAAAATAATCAAATATTCACTTAGAATTTCACTCACGTC
Found at i:106313576 original size:2 final size:2
Alignment explanation
Indices: 106313569--106313597 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106313559 CGTTTTATGT
106313569 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106313598 CATTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106313871 original size:2 final size:2
Alignment explanation
Indices: 106313864--106313888 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
106313854 TTTATACTTT
106313864 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
106313889 TATCTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106323305 original size:15 final size:17
Alignment explanation
Indices: 106323285--106323321 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
106323275 AAAGGTTGAG
106323285 ATGAATATAT-TTGG-A
1 ATGAATATATATTGGTA
*
106323300 ATGAATGTATATTGGTA
1 ATGAATATATATTGGTA
106323317 ATGAA
1 ATGAA
106323322 ATTGATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 4 0.21
17 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATGAATATATATTGGTA
Found at i:106354491 original size:46 final size:46
Alignment explanation
Indices: 106354424--106354685 Score: 398
Period size: 46 Copynumber: 5.7 Consensus size: 46
106354414 GGTAACCTGA
106354424 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
106354470 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
106354516 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
106354562 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * * *
106354608 GAACAAGACCATGGTTGAAAGATACCATGACAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
106354654 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
106354686 TCATGTCAAA
Statistics
Matches: 200, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 200 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:106354616 original size:138 final size:130
Alignment explanation
Indices: 106354374--106354685 Score: 417
Period size: 138 Copynumber: 2.3 Consensus size: 130
106354364 AGTGTGCTCT
* *
106354374 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTGAGTGTAAGACCATGGT
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
*** *
106354439 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGACAAC
106354504 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--A-GTGTAAG
* *
106354569 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
58 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
106354634 ATGACAAC
123 ATGACAAC
* * * * * * *
106354642 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
106354686 TCATGTCAAA
Statistics
Matches: 159, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
130 45 0.28
135 2 0.01
137 1 0.01
138 111 0.70
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGACAAC
Found at i:106357252 original size:12 final size:12
Alignment explanation
Indices: 106357235--106357261 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
106357225 CATGGTAGTA
106357235 TGGTAGGCCGTG
1 TGGTAGGCCGTG
106357247 TGGTAGGCCGTG
1 TGGTAGGCCGTG
106357259 TGG
1 TGG
106357262 AAGCACACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.52, T:0.26
Consensus pattern (12 bp):
TGGTAGGCCGTG
Found at i:106358813 original size:28 final size:28
Alignment explanation
Indices: 106358781--106358836 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
106358771 CCCAATAGTC
106358781 AATAATGAAAAGTCATTACCATAGGCTT
1 AATAATGAAAAGTCATTACCATAGGCTT
*
106358809 AATAATGTAAAGTCATTACCATAGGCTT
1 AATAATGAAAAGTCATTACCATAGGCTT
106358837 GCATGAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (28 bp):
AATAATGAAAAGTCATTACCATAGGCTT
Found at i:106379647 original size:19 final size:19
Alignment explanation
Indices: 106379612--106379649 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
106379602 TTGCAATTTA
*
106379612 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
106379631 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
106379650 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:106386765 original size:40 final size:40
Alignment explanation
Indices: 106386580--106386765 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
106386570 GCTACTCGTT
* * * *
106386580 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
106386620 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
106386660 CAAATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * *
106386700 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
106386741 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106386766 CATCATTCGA
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 113 0.89
41 11 0.09
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:106395425 original size:5 final size:5
Alignment explanation
Indices: 106395415--106395441 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
106395405 ATTTCATCTG
106395415 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
106395442 CCCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:106403296 original size:18 final size:18
Alignment explanation
Indices: 106403273--106403310 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
106403263 TGCTTCAGTG
106403273 GTTAAGTGTTCTTGGTGT
1 GTTAAGTGTTCTTGGTGT
106403291 GTTAAGTGTTCTTGGTGT
1 GTTAAGTGTTCTTGGTGT
106403309 GT
1 GT
106403311 GTGTGTGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.05, G:0.34, T:0.50
Consensus pattern (18 bp):
GTTAAGTGTTCTTGGTGT
Found at i:106407704 original size:94 final size:94
Alignment explanation
Indices: 106407571--106407811 Score: 317
Period size: 94 Copynumber: 2.6 Consensus size: 94
106407561 GCTGGACCAG
* * *
106407571 GGTTACAGAGCATTACCAGACGAACAAAATAATAAACCATTCAAATCATACATCCAAATGTAAAA
1 GGTTACAGAGCATTACTAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAAAA
** * *
106407636 TCC-CTAACCTTTATCCGTCGTCAG-AACAA
66 -CCTCTAACCCGTATACATCG-CAGAAACAA
* *
106407665 GGTTA-AGTAGTATTACTAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAAC
1 GGTTACAG-AGCATTACTAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAAA
* *
106407729 ACCTCTAACCCGTATACATCGCCGAAACAG
65 ACCTCTAACCCGTATACATCGCAGAAACAA
* *
106407759 GGTTACAGAGCATTACTGGACAAACATAATAGTAAACCATTCAAATCATACAT
1 GGTTACAGAGCATTACTAGACAAACAAAATAGTAAACCATTCAAATCATACAT
106407812 AAATACAAAC
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
93 6 0.05
94 121 0.94
95 2 0.02
ACGTcount: A:0.43, C:0.23, G:0.12, T:0.23
Consensus pattern (94 bp):
GGTTACAGAGCATTACTAGACAAACAAAATAGTAAACCATTCAAATCATACATCCAAATGTAAAA
CCTCTAACCCGTATACATCGCAGAAACAA
Found at i:106409084 original size:33 final size:33
Alignment explanation
Indices: 106409060--106409174 Score: 194
Period size: 33 Copynumber: 3.5 Consensus size: 33
106409050 CACTTGAGTC
*
106409060 AATCCATCCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
106409093 AATCCAACCATCACACCAATGTTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
106409126 AAACCAACCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAGAGCT
*
106409159 AATCCAACCAACACAC
1 AATCCAACCATCACAC
106409175 TAAATAAAGA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 76 1.00
ACGTcount: A:0.41, C:0.34, G:0.08, T:0.17
Consensus pattern (33 bp):
AATCCAACCATCACACCAATGCTCATAAGAGCT
Found at i:106419952 original size:24 final size:23
Alignment explanation
Indices: 106419925--106420026 Score: 73
Period size: 24 Copynumber: 4.2 Consensus size: 23
106419915 ATATAGTATT
106419925 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
106419949 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
* * *
106419973 TAAGAAATATATATAAT-TAATAATA
1 TAA-AAATATATA-CATGAAAT-GTA
* *
106419998 TTAAAAATATATACATGACATATA
1 -TAAAAATATATACATGAAATGTA
106420022 TAAAA
1 TAAAA
106420027 CATGTACAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
23 5 0.08
24 28 0.44
25 23 0.37
26 7 0.11
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:106420141 original size:23 final size:23
Alignment explanation
Indices: 106420114--106420209 Score: 106
Period size: 23 Copynumber: 4.2 Consensus size: 23
106420104 ACACACACAT
* *
106420114 ATATATAAATAATAGTATTAGAA
1 ATATATAAATAATAGTATAAAAA
* *
106420137 ATATACATATAATAGTATAAAAA
1 ATATATAAATAATAGTATAAAAA
* * *
106420160 ATATATAACTAATAATAT-TAAA
1 ATATATAAATAATAGTATAAAAA
106420182 ATATATATAATAATA-TATAAAAA
1 ATATATA-AATAATAGTATAAAAA
106420205 ATATA
1 ATATA
106420210 ATATTGAAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
22 13 0.22
23 47 0.78
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATATAAATAATAGTATAAAAA
Found at i:106420210 original size:43 final size:46
Alignment explanation
Indices: 106420114--106420209 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
106420104 ACACACACAT
*
106420114 ATATATAAATAATAGTATTAGAAATATACATATAATAGTATAAAAA
1 ATATATAAATAATAATATTAGAAATATACATATAATAGTATAAAAA
* *
106420160 ATATATAACTAATAATATTA-AAATATATATAATAATA-TATAAAAA
1 ATATATAAATAATAATATTAGAAATATACAT-ATAATAGTATAAAAA
106420205 ATATA
1 ATATA
106420210 ATATTGAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (46 bp):
ATATATAAATAATAATATTAGAAATATACATATAATAGTATAAAAA
Found at i:106420437 original size:17 final size:16
Alignment explanation
Indices: 106420411--106420443 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
106420401 CTATATATAA
106420411 ATATATATACATACAT
1 ATATATATACATACAT
106420427 ATATAATATACATACAT
1 ATAT-ATATACATACAT
106420444 TAATATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:106420458 original size:3 final size:3
Alignment explanation
Indices: 106420444--106420607 Score: 74
Period size: 3 Copynumber: 54.7 Consensus size: 3
106420434 ATACATACAT
* *
106420444 TAA TAT TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
106420490 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
106420535 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* *
106420580 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
106420608 TGTAAAAAAA
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 13 0.11
3 94 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:106421065 original size:18 final size:18
Alignment explanation
Indices: 106421042--106421080 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
106421032 ATTTTGAGGA
106421042 GAGAAAAAAAAAAGAAGG
1 GAGAAAAAAAAAAGAAGG
* * *
106421060 GAGAAAGAAGAGAGAAGG
1 GAGAAAAAAAAAAGAAGG
106421078 GAG
1 GAG
106421081 GGGGGAAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (18 bp):
GAGAAAAAAAAAAGAAGG
Found at i:106422242 original size:2 final size:2
Alignment explanation
Indices: 106422235--106422269 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
106422225 TGTATTTTAT
106422235 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106422270 TAGATTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106422572 original size:28 final size:30
Alignment explanation
Indices: 106422509--106422572 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 30
106422499 GTTACAAATA
* *
106422509 ATTTTTTATACTTTTTAAATAATTTTAATG
1 ATTTTTTATAATTTTAAAATAATTTTAATG
*
106422539 A-TTTTTA-AATTTTAAAATAATTTTTAT-
1 ATTTTTTATAATTTTAAAATAATTTTAATG
106422566 ATTTTTT
1 ATTTTTT
106422573 TTGAAACTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 6 0.20
30 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTTTTATAATTTTAAAATAATTTTAATG
Found at i:106428328 original size:18 final size:18
Alignment explanation
Indices: 106428305--106428344 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
106428295 AGCTTAAACA
106428305 CATTGATTGCATTTCCTT
1 CATTGATTGCATTTCCTT
106428323 CATTGATTGCATTTCCTT
1 CATTGATTGCATTTCCTT
106428341 CATT
1 CATT
106428345 TTGAATTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (18 bp):
CATTGATTGCATTTCCTT
Found at i:106435541 original size:33 final size:32
Alignment explanation
Indices: 106435503--106435592 Score: 101
Period size: 33 Copynumber: 2.8 Consensus size: 32
106435493 GAGATGTACA
106435503 TTCCTTTCCAAGTGGTACACACAAAGTATACCT
1 TTCCTTTCCAAGT-GTACACACAAAGTATACCT
* *
106435536 TTCCTTTTCATA-TAGTATACACAAAGTATACCT
1 TTCCTTTCCA-AGT-GTACACACAAAGTATACCT
** *
106435569 AACATTTCCAAGTGTACACACAAA
1 TTCCTTTCCAAGTGTACACACAAA
106435593 TTGTACATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
32 11 0.23
33 35 0.74
34 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (32 bp):
TTCCTTTCCAAGTGTACACACAAAGTATACCT
Found at i:106435613 original size:32 final size:33
Alignment explanation
Indices: 106435505--106435613 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 33
106435495 GATGTACATT
* * **
106435505 CCTTTCCAAGTGGTACACACAAAGTATACCTTT
1 CCTTTCCAAGTAGTACACACAAAGTATACATAA
* * *
106435538 CCTTTTCATA-TAGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTAGTACACACAAAGTATACATAA
* * *
106435571 CATTTCCAAGT-GTACACACAAATTGTACATAA
1 CCTTTCCAAGTAGTACACACAAAGTATACATAA
*
106435603 CCTTTTCAAGT
1 CCTTTCCAAGT
106435614 TGTATCATTT
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
32 27 0.44
33 33 0.54
34 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTAGTACACACAAAGTATACATAA
Found at i:106444332 original size:32 final size:33
Alignment explanation
Indices: 106444273--106444337 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
106444263 CATATAATAT
*
106444273 ACACAAAGTATACCTAACATTTCCAAG-TGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
* * * *
106444305 ACACAAATTGTACATAACCTTTTCAAGTTGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
106444338 CATTTGGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.29
Consensus pattern (33 bp):
ACACAAAGTATACATAACATTTCCAAGTTGTAC
Found at i:106447104 original size:26 final size:25
Alignment explanation
Indices: 106447037--106447128 Score: 150
Period size: 26 Copynumber: 3.6 Consensus size: 25
106447027 CATGAAATTC
106447037 ATCATGAAACATTTACCTAACCCATT
1 ATCATG-AACATTTACCTAACCCATT
106447063 ATCATGAACATTTACCTAACCCATT
1 ATCATGAACATTTACCTAACCCATT
*
106447088 ATCATGGAACATTTACCTAACCTATT
1 ATCAT-GAACATTTACCTAACCCATT
106447114 ATCATG-ACATTTACC
1 ATCATGAACATTTACC
106447129 ATAAATTATA
Statistics
Matches: 64, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
24 9 0.14
25 25 0.39
26 30 0.47
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCATGAACATTTACCTAACCCATT
Found at i:106452541 original size:25 final size:27
Alignment explanation
Indices: 106452504--106452556 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106452494 TCAAACATGC
106452504 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106452530 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106452556 A
1 A
106452557 AAATTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106454069 original size:26 final size:26
Alignment explanation
Indices: 106454033--106454117 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
106454023 ACATGAAATT
106454033 ATTATCATGAAACATTTACCTAACCC
1 ATTATCATGAAACATTTACCTAACCC
106454059 ATTATCATGAAACATTTACCTAACCC
1 ATTATCATGAAACATTTACCTAACCC
* *
106454085 ATTATCATGGAACATTTACCTAACCT
1 ATTATCATGAAACATTTACCTAACCC
106454111 ATTATCA
1 ATTATCA
106454118 ATTTGTATCA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
ATTATCATGAAACATTTACCTAACCC
Found at i:106456350 original size:26 final size:26
Alignment explanation
Indices: 106456313--106456379 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
106456303 TATTCTGACC
* *
106456313 CACAGCTTGTGTGAGCAGGCTCATTT
1 CACAGCTCGTGTGAGCAGACTCATTT
106456339 CACAGCTCGTGTGAGCAGACTCATTT
1 CACAGCTCGTGTGAGCAGACTCATTT
*
106456365 CATAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
106456380 TAACGATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACTCATTT
Found at i:106469688 original size:46 final size:46
Alignment explanation
Indices: 106469613--106469794 Score: 260
Period size: 46 Copynumber: 4.0 Consensus size: 46
106469603 TTATCTTCGA
* * * *
106469613 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTTATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
106469659 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TGCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATGT
* * *
106469705 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
106469751 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
106469795 TTCAGAGAGC
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 5 0.04
46 120 0.96
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:106470204 original size:24 final size:23
Alignment explanation
Indices: 106470172--106470220 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
106470162 ATCAGGTAGT
*
106470172 TCACAAAGAACCATATCGTGAAGC
1 TCACAAAGAACC-TATCGAGAAGC
* *
106470196 TCACGAAGAGCCTATCGAGAAGC
1 TCACAAAGAACCTATCGAGAAGC
106470219 TC
1 TC
106470221 CGGATAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.16
Consensus pattern (23 bp):
TCACAAAGAACCTATCGAGAAGC
Found at i:106470217 original size:23 final size:23
Alignment explanation
Indices: 106470185--106470300 Score: 101
Period size: 23 Copynumber: 5.0 Consensus size: 23
106470175 CAAAGAACCA
*
106470185 TATCGTGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
106470208 TATCGAGAAGCTC-CGGATAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
106470230 ATATATCGGGAAGTTCAAG-CGAGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* *
106470256 TATCGGGAGGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
106470279 TATCGGGAAGCTCACGAAGAGC
1 TATCGGGAAGCTCACGAAGAGC
106470301 TGTATTTCGG
Statistics
Matches: 72, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
22 7 0.10
23 45 0.62
24 4 0.06
25 14 0.19
26 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.16
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:106472439 original size:18 final size:18
Alignment explanation
Indices: 106472391--106472439 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
106472381 ATAATATAAT
106472391 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
106472410 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
106472431 TATTTAATA
1 TATTTAATA
106472440 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Done.