Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 368 of 444
Found at i:107046200 original size:10 final size:10
Alignment explanation
Indices: 107046187--107046229 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
107046177 AGGATTTAAT
107046187 TTTATTTATC
1 TTTATTTATC
*
107046197 TTTAATTATC
1 TTTATTTATC
107046207 TTTATTTAT-
1 TTTATTTATC
107046216 TTGTATTTATC
1 TT-TATTTATC
107046227 TTT
1 TTT
107046230 TAGAATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTATTTATC
Found at i:107052133 original size:9 final size:9
Alignment explanation
Indices: 107052119--107052148 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
107052109 AATTTGTGAA
107052119 AAATAAAAT
1 AAATAAAAT
107052128 AAATAAAAT
1 AAATAAAAT
107052137 AAATAAAAT
1 AAATAAAAT
107052146 AAA
1 AAA
107052149 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:107057543 original size:18 final size:18
Alignment explanation
Indices: 107057520--107057592 Score: 68
Period size: 18 Copynumber: 4.3 Consensus size: 18
107057510 CCATGTGACC
107057520 TGCCCATATGGGCCCACA
1 TGCCCATATGGGCCCACA
* *
107057538 TGCCC--ATGTG---ACC
1 TGCCCATATGGGCCCACA
107057551 TGCCCATATGGGCCCACA
1 TGCCCATATGGGCCCACA
*
107057569 TGCCCATGT-GGCCCACA
1 TGCCCATATGGGCCCACA
107057586 TGGCCCA
1 T-GCCCA
107057593 AATTGGCCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
13 7 0.16
15 4 0.09
16 4 0.09
17 9 0.20
18 20 0.45
ACGTcount: A:0.19, C:0.40, G:0.23, T:0.18
Consensus pattern (18 bp):
TGCCCATATGGGCCCACA
Found at i:107057546 original size:31 final size:31
Alignment explanation
Indices: 107057503--107057578 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
107057493 AAAATAGGCT
*
107057503 CACAAGCCCATGTGACCTGCCCATATGGGCC
1 CACATGCCCATGTGACCTGCCCATATGGGCC
107057534 CACATGCCCATGTGACCTGCCCATATGGGCC
1 CACATGCCCATGTGACCTGCCCATATGGGCC
107057565 CACATGCCCATGTG
1 CACATGCCCATGTG
107057579 GCCCACATGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.38, G:0.22, T:0.18
Consensus pattern (31 bp):
CACATGCCCATGTGACCTGCCCATATGGGCC
Found at i:107061184 original size:30 final size:30
Alignment explanation
Indices: 107061124--107061184 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
107061114 ATGTCTATGT
* **
107061124 AAATTATCATTGGTTTGGGATTTTTCTGGA
1 AAATTATCATTGGTCTGGGATTTTGATGGA
107061154 AAATTAAT-ATTGGTCTGGGATTTTGATGGA
1 AAATT-ATCATTGGTCTGGGATTTTGATGGA
107061184 A
1 A
107061185 GAGTATTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.43
Consensus pattern (30 bp):
AAATTATCATTGGTCTGGGATTTTGATGGA
Found at i:107061516 original size:28 final size:28
Alignment explanation
Indices: 107061476--107061531 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
107061466 ACTACAAGAG
107061476 ATAGGATTGGTTGTCATCGGCAATTTTT
1 ATAGGATTGGTTGTCATCGGCAATTTTT
107061504 ATAGGATTGGTTGTCATCGGCAATTTTT
1 ATAGGATTGGTTGTCATCGGCAATTTTT
107061532 CTAATATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.11, G:0.25, T:0.43
Consensus pattern (28 bp):
ATAGGATTGGTTGTCATCGGCAATTTTT
Found at i:107066567 original size:45 final size:45
Alignment explanation
Indices: 107066503--107066590 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
107066493 AACCTAACCT
107066503 CTATATAAGTACACCTATATAGGTGCAAGATTAGATGCAATGCCC
1 CTATATAAGTACACCTATATAGGTGCAAGATTAGATGCAATGCCC
* *
107066548 CTATATAAGTCCACCTATATAGGTGCATGATTAGATGCAATGC
1 CTATATAAGTACACCTATATAGGTGCAAGATTAGATGCAATGC
107066591 AGGTTAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (45 bp):
CTATATAAGTACACCTATATAGGTGCAAGATTAGATGCAATGCCC
Found at i:107073673 original size:5 final size:5
Alignment explanation
Indices: 107073660--107073692 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
107073650 AAGATTTGAT
107073660 TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
107073693 TAAATTAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:107073676 original size:15 final size:16
Alignment explanation
Indices: 107073653--107073694 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
107073643 AAATAGGAAG
*
107073653 ATTTGATTTTTA-TTT
1 ATTTTATTTTTATTTT
107073668 ATTTTA-TTTTATTTT
1 ATTTTATTTTTATTTT
107073683 ATTTTATTTTTA
1 ATTTTATTTTTA
107073695 AATTAGTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 14 0.58
16 5 0.21
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (16 bp):
ATTTTATTTTTATTTT
Found at i:107079786 original size:178 final size:178
Alignment explanation
Indices: 107079476--107079914 Score: 646
Period size: 178 Copynumber: 2.5 Consensus size: 178
107079466 TCGGTGAATT
* * * *
107079476 TACAAGTCTTATCTTCTTGAGGTAACAAGGAAGCAGACTAAAAATTACAAATCTTATCTTCATGT
1 TACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
* ** *
107079541 ATCGGCTATGGAGCAGATCGGAAATAGTGAGTCTTATCTCCATGTATCGGCTATAGAGTAGGTTT
66 ATCGGCTATGGAGCAGATCGGAAATAGCGAGTCTTATCTCCATGTATCGGCTATAGAACAAGTTT
107079606 TAACCACCAGCCTTATCTCTCTAACGTAGCAAGAGAGCAGGTTGAAGA
131 TAACCACCAGCCTTATCTCTCTAACGTAGCAAGAGAGCAGGTTGAAGA
* *
107079654 TACAAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATTT
1 TACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
* * * *
107079719 ATCGGCTATGGGGCAGATCTGAAATGGCGAGTTTTATCTCCATGTATCGGCTAT-GAAACAAGTT
66 ATCGGCTATGGAGCAGATCGGAAATAGCGAGTCTTATCTCCATGTATCGGCTATAG-AACAAGTT
* * * * *
107079783 TTAACCACTAGCTTTGTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
130 TTAACCACCAGCCTTATCTCTCTAACGTAGCAAGAGAGCAGGTTGAAGA
* * * * *
107079832 TACAAGTATTATCTTCCTGAAGTAGCAAGTAAGCAGACTGAAAATTACAGATCTTATCTCTATGT
1 TACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
107079897 ATCGGCTATGGAGCAGAT
66 ATCGGCTATGGAGCAGAT
107079915 TTTAGCCACC
Statistics
Matches: 233, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
177 1 0.00
178 232 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (178 bp):
TACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGT
ATCGGCTATGGAGCAGATCGGAAATAGCGAGTCTTATCTCCATGTATCGGCTATAGAACAAGTTT
TAACCACCAGCCTTATCTCTCTAACGTAGCAAGAGAGCAGGTTGAAGA
Found at i:107079918 original size:133 final size:133
Alignment explanation
Indices: 107079752--107080047 Score: 418
Period size: 133 Copynumber: 2.2 Consensus size: 133
107079742 ATGGCGAGTT
* * * * * *
107079752 TTATCTCCATGTATCGGCTATGAAACA-AGTTTTAACCACTAGCTTTGTCTCTCTGAGGTAGCAA
1 TTATCTCTATGTATCGGCTATGGAGCAGA-TTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAA
107079816 GAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAAGTAGCAA-GTAAGCAGACTGAAAATTAC
65 GAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAAGTAGCAATG-AAGCAGACTGAAAATTAC
107079880 AGATC
129 AGATC
* *
107079885 TTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAG
1 TTATCTCTATGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAG
* * * *
107079950 AGTGCAGGTTGAAGATACAAGTCTTATCTTTCTGAGGTAGCAATGAAGCAGACTGAAAATTACAG
66 AGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAAGTAGCAATGAAGCAGACTGAAAATTACAG
107080015 ATC
131 ATC
* *
107080018 TTATCT-TCATGTATCGACTATAGAGCAGAT
1 TTATCTCT-ATGTATCGGCTATGGAGCAGAT
107080048 CGAAAATGGC
Statistics
Matches: 146, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
132 1 0.01
133 143 0.98
134 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (133 bp):
TTATCTCTATGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAG
AGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAAGTAGCAATGAAGCAGACTGAAAATTACAG
ATC
Found at i:107080024 original size:178 final size:178
Alignment explanation
Indices: 107079840--107080201 Score: 525
Period size: 178 Copynumber: 2.0 Consensus size: 178
107079830 GATACAAGTA
* * *
107079840 TTATCTTCCTGAAGTAG-CAAGTA-AGCAGA-CTGAAAATTAC-AGATCTTATCTCTATGTATCG
1 TTATCTTCATGAA-TAGACAA-TAGAGCAGATC-GAAAATGACGAG-TCTTATCTCCATGTATCG
* **
107079901 GCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAGAGTGCAGGTTGAAGAT
62 GCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAGAGGGCAGGTCAAAGAT
* *
107079966 ACAAGTCTTATCTTTCTGAGGTAGCAATGAAGCAGACTGAAAATTACAGATC
127 ACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
* * * *
107080018 TTATCTTCATGTATCGACTATAGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTA
1 TTATCTTCATGAATAGACAATAGAGCAGATCGAAAATGACGAGTCTTATCTCCATGTATCGGCTA
*
107080083 TGGAGCAGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAGCAAGAGGGCAGGTCAAAGATACAA
66 TGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAGAGGGCAGGTCAAAGATACAA
* *
107080148 GTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAAATTTCAGATC
131 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
107080196 TTATCT
1 TTATCT
107080202 CCCTAAATAG
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
177 4 0.02
178 158 0.96
179 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (178 bp):
TTATCTTCATGAATAGACAATAGAGCAGATCGAAAATGACGAGTCTTATCTCCATGTATCGGCTA
TGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAGAGGGCAGGTCAAAGATACAA
GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
Found at i:107080122 original size:311 final size:311
Alignment explanation
Indices: 107079572--107080203 Score: 919
Period size: 311 Copynumber: 2.0 Consensus size: 311
107079562 AAATAGTGAG
* *
107079572 TCTTATCTCCATGTATCGGCTATAGAGTAGGTTTTAACCACCAGCCTTATCTCTCTAACGTAGCA
1 TCTTATCTCCATGTATCGGCTATAGAGCAGATTTTAACCACCAGCCTTATCTCTCTAACGTAGCA
*
107079637 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * * *
107079702 AGATCTTATCTCCATTTATCGGCTATGGGGCAGATCTGAAATGGCGAGTTTTATCTCCATGTATC
131 AGATCTTATCTCCATGTATCGACTATAGAGCAGATCTGAAATGGCGAGTCTTATCTCCATGTATC
* * * **
107079767 GGCTATGAAACAAGTTTTAACCACTAGCTTTGTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
196 GGCTATGAAACAAGTTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTCAAAGA
*
107079832 TACAAGTATTATCTTCCTGAAGTAGCAAGTAAGCAGACTGAAAATTACAGA
261 TACAAGTATTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAAATTACAGA
* * * * * *
107079883 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATAGAGCAGATTTTAACCACCAGCCTTATCTCTCTAACGTAGCA
* *
107079948 AGAGTGCAGGTTGAAGATACAAGTCTTATCTT-TCTGAGGTAGCAATGAAGCAGACTGAAAATTA
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCT-TGAGGTAGCAAGGAAGCAGACTGAAAATTA
*
107080012 CAGATCTTATCTTCATGTATCGACTATAGAGCAGATC-GAAAATGGCGAGTCTTATCTCCATGTA
130 CAGATCTTATCTCCATGTATCGACTATAGAGCAGATCTG-AAATGGCGAGTCTTATCTCCATGTA
* * * * * *
107080076 TCGGCTATGGAGC-AGATTTTAGCCACCGGCCTTATCTCTTTGAGGTAGCAAGAGGGCAGGTCAA
194 TCGGCTATGAAACAAG-TTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTCAA
* * * *
107080140 AGATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAAATTTCAGA
258 AGATACAAGTATTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAAATTACAGA
107080194 TCTTATCTCC
1 TCTTATCTCC
107080204 CTAAATAGTA
Statistics
Matches: 284, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
310 4 0.01
311 280 0.99
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (311 bp):
TCTTATCTCCATGTATCGGCTATAGAGCAGATTTTAACCACCAGCCTTATCTCTCTAACGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTCCATGTATCGACTATAGAGCAGATCTGAAATGGCGAGTCTTATCTCCATGTATC
GGCTATGAAACAAGTTTTAACCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTCAAAGA
TACAAGTATTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAAATTACAGA
Found at i:107080258 original size:44 final size:44
Alignment explanation
Indices: 107080210--107080429 Score: 168
Period size: 44 Copynumber: 5.0 Consensus size: 44
107080200 CTCCCTAAAT
* * *
107080210 AGTAGTGGAGTAGATCGAAGATGGTGAGCCTTAACCCCCTAAGC
1 AGTAGTGGAGCAGATCGAAGATGGTCAGCCTTAGCCCCCTAAGC
* * * *
107080254 AGTAG-GGTAACAG-GCTGAAGAT--TACAGATCTTAGCTCCCTAAGC
1 AGTAGTGG-AGCAGATC-GAAGATGGT-CAG-CCTTAGCCCCCTAAGC
* *
107080298 AGTAGTGGAGCAGATCGAAGACGGTAAGCCTTAGCCCCCTAAGC
1 AGTAGTGGAGCAGATCGAAGATGGTCAGCCTTAGCCCCCTAAGC
* * * *
107080342 AGTAG-GGTAACAG-GCTGAAGAT--TACAGATCTTAGCTCCCTAAGC
1 AGTAGTGG-AGCAGATC-GAAGATGGT-CAG-CCTTAGCCCCCTAAGC
* * *
107080386 AGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGC
1 AGTAGTGGAGCAGATCGAAGATGGTCAGCCTTAGCCCCCTAAGC
107080430 CGAAGATTAC
Statistics
Matches: 134, Mismatches: 26, Indels: 32
0.70 0.14 0.17
Matches are distributed among these distances:
42 2 0.01
43 10 0.07
44 110 0.82
45 10 0.07
46 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (44 bp):
AGTAGTGGAGCAGATCGAAGATGGTCAGCCTTAGCCCCCTAAGC
Found at i:107080303 original size:88 final size:88
Alignment explanation
Indices: 107080180--107080429 Score: 419
Period size: 88 Copynumber: 2.8 Consensus size: 88
107080170 AGGAAGCAGA
* * * ** * *
107080180 CTGAAAATTTCAGATCTTATCTCCCTAAATAGTAGTGGAGTAGATCGAAGATGGTGAGCCTTAAC
1 CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
107080245 CCCCTAAGCAGTAGGGTAACAGG
66 CCCCTAAGCAGTAGGGTAACAGG
* *
107080268 CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTAGC
1 CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
107080333 CCCCTAAGCAGTAGGGTAACAGG
66 CCCCTAAGCAGTAGGGTAACAGG
107080356 CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
1 CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
107080421 CCCCTAAGC
66 CCCCTAAGC
107080430 CGAAGATTAC
Statistics
Matches: 151, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 151 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (88 bp):
CTGAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAAC
CCCCTAAGCAGTAGGGTAACAGG
Found at i:107080477 original size:73 final size:73
Alignment explanation
Indices: 107080358--107080502 Score: 272
Period size: 73 Copynumber: 2.0 Consensus size: 73
107080348 GTAACAGGCT
*
107080358 GAAGATTACAGATCTTAGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
1 GAAGATTACAGATCTTAGCTCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
107080423 CCTAAGCC
66 CCTAAGCC
*
107080431 GAAGATTACAGATCTTAGTTCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
1 GAAGATTACAGATCTTAGCTCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
107080496 CCTAAGC
66 CCTAAGC
107080503 AGTAGGGTAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (73 bp):
GAAGATTACAGATCTTAGCTCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
CCTAAGCC
Found at i:107080500 original size:44 final size:44
Alignment explanation
Indices: 107080451--107081033 Score: 241
Period size: 44 Copynumber: 13.3 Consensus size: 44
107080441 GATCTTAGTT
*
107080451 CCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* * * * * * *
107080495 CCCTAAGCAGTAG-GGTAACAG-GCTGAAGA--TTACAGATCTTAGCT
1 CCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGT-GAG-CCTTAACC
* *
107080539 CCCTAAACAGTAGTAGAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* * * * *** * * *
107080583 CCCTAAGCAGTAGAGTAACA-AGCTGAAGATTAT-AGATCTTATCT
1 CCCTAAGCAGTAGTGGAGCAGATC-GAAGACGGTGAG-CCTTAACC
* * *
107080627 CCCTAAGCAGTAGTGAAGCAGATCAAATACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* * * ** *** * * *
107080671 CCTTAAGCAGTAG-GGTAACAG-GCTGAATTCACAGA-TCTTATCT
1 CCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGTGAGCCTTAACC
*
107080714 CCCTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* * * *** * * *
107080758 CCCTAAGCAATAG-GGTAACA-AACTGAAGATTAT-AGATCTTATCT
1 CCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGTGAG-CCTTAACC
* * *
107080802 CCCTAAGCAGTAGTGAAGCAGATCAAAGACAGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* * ** *** * * *
107080846 CCCTAAGCAGTAG-GGTAACAG-GCTGAATTCACAGA-TCTTATCT
1 CCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGTGAGCCTTAACC
* *
107080889 CCTTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
** * * ** * * * *
107080933 CTTTAAGCAGTAG-GGTAACAG-GCTGAA-A-ATTACAGATCTTATCT
1 CCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGT-GAG-CCTTAACC
* *
107080977 CCCTAAACAGTAGTGGAACAGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
107081021 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
107081034 GGTAACAGGC
Statistics
Matches: 373, Mismatches: 130, Indels: 72
0.65 0.23 0.13
Matches are distributed among these distances:
42 2 0.01
43 77 0.21
44 273 0.73
45 19 0.05
46 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
Found at i:107080580 original size:88 final size:88
Alignment explanation
Indices: 107080431--107081172 Score: 1021
Period size: 88 Copynumber: 8.5 Consensus size: 88
107080421 CCCCTAAGCC
*
107080431 GAAGATTACAGATCTTAGT-TCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 GAAGATTACAGATCTTA-TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
107080495 CCCTAAGCAGTAGGGTAACAGGCT
65 CCCTAAGCAGTAGGGTAACAGGCT
* * *
107080519 GAAGATTACAGATCTTAGCTCCCTAAACAGTAGTAGAGCAGATCGAAGACGGTGAGCCTTAACCC
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
* *
107080584 CCTAAGCAGTAGAGTAACAAGCT
66 CCTAAGCAGTAGGGTAACAGGCT
* * * *
107080607 GAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAATACGGTGAGCCTTAACCC
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
*
107080672 CTTAAGCAGTAGGGTAACAGGCT
66 CCTAAGCAGTAGGGTAACAGGCT
*
107080695 G-A-ATTCACAGATCTTATCTCCCTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 GAAGATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
* **
107080758 CCCTAAGCAATAGGGTAACAAACT
65 CCCTAAGCAGTAGGGTAACAGGCT
* * * *
107080782 GAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACAGTGAGCCTTAACCC
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
107080847 CCTAAGCAGTAGGGTAACAGGCT
66 CCTAAGCAGTAGGGTAACAGGCT
* *
107080870 G-A-ATTCACAGATCTTATCTCCTTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
1 GAAGATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACC
**
107080933 CTTTAAGCAGTAGGGTAACAGGCT
65 CCCTAAGCAGTAGGGTAACAGGCT
* * *
107080957 GAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAACAGATCGAAGACGGTGAGCCTTAACCC
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
107081022 CCTAAGCAGTAGGGTAACAGGCT
66 CCTAAGCAGTAGGGTAACAGGCT
* * * * ***
107081045 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCG-AGAACAGTAAGCCTTATGT
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG-ACGGTGAGCCTTAACC
* * * *
107081109 CCTTGAGCAGCAGCGG-AGCAGGCT
65 CCCTAAGCAGTAG-GGTAACAGGCT
* * * *
107081133 GAAGATTACAAATCATATCTCCCTAAACAGTAGCGGAGCA
1 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
107081173 AATTGAAACG
Statistics
Matches: 582, Mismatches: 63, Indels: 18
0.88 0.10 0.03
Matches are distributed among these distances:
86 6 0.01
87 151 0.26
88 417 0.72
89 8 0.01
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (88 bp):
GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCC
CCTAAGCAGTAGGGTAACAGGCT
Found at i:107080790 original size:175 final size:175
Alignment explanation
Indices: 107080426--107081165 Score: 1024
Period size: 175 Copynumber: 4.2 Consensus size: 175
107080416 TTAACCCCCT
* * * *
107080426 AAGCCGAAGATTACAGATCTTAGT-TCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCT
1 AAGCTGAAGATTACAGATCTTA-TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCT
* * *
107080490 TAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTAGCTCCCTAAACAGTAGTAG
65 TAACCCCCTAAGCAGTAGGGTAACAGGCTGAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGG
*
107080555 AGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGAGTAAC
129 AGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* *
107080602 AAGCTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAATACGGTGAGCCTT
1 AAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTT
* *
107080667 AACCCCTTAAGCAGTAGGGTAACAGGCTG-AATTCACAGATCTTATCTCCCTGAGCAGTAGTGGA
66 AACCCCCTAAGCAGTAGGGTAACAGGCTGAAATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGA
*
107080731 GCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAATAGGGTAAC
130 GCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * *
107080777 AAACTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACAGTGAGCCTT
1 AAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTT
* *
107080842 AACCCCCTAAGCAGTAGGGTAACAGGCTG-AATTCACAGATCTTATCTCCTTGAGCAGTAGTGGA
66 AACCCCCTAAGCAGTAGGGTAACAGGCTGAAATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGA
**
107080906 GCAGATCGAAGACGGTGAGCCTTAACCCTTTAAGCAGTAGGGTAAC
130 GCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * *
107080952 AGGCTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAA-CAGATCGAAGACGGTGAGCCT
1 AAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT-GAAGCAGATCAAAGACGGTGAGCCT
*
107081016 TAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGG
65 TAACCCCCTAAGCAGTAGGGTAACAGGCTG-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* * *** * * * *
107081081 AGCAGATCG-AGAACAGTAAGCCTTATGTCCTTGAGCAGCAGCGG-AGC
129 AGCAGATCGAAG-ACGGTGAGCCTTAACCCCCTAAGCAGTAG-GGTAAC
* * * *
107081128 AGGCTGAAGATTACAAATCATATCTCCCTAAACAGTAG
1 AAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAG
107081166 CGGAGCAAAT
Statistics
Matches: 514, Mismatches: 43, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
174 3 0.01
175 324 0.63
176 181 0.35
177 6 0.01
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (175 bp):
AAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTT
AACCCCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAG
CAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
Found at i:107080970 original size:263 final size:261
Alignment explanation
Indices: 107080435--107081165 Score: 1011
Period size: 263 Copynumber: 2.8 Consensus size: 261
107080425 TAAGCCGAAG
*
107080435 ATTACAGATCTTAGT-TCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCT
1 ATTACAGATCTTA-TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCT
* *
107080499 AAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTAGCTCCCTAAACAGTAGT-AGAGCAGATC
65 AAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGA-AGCAGATC
* *
107080563 GAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGAGTAACAAGCTGAAGATTATAGATCTTATCTC
129 -AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGAGTAACAAGCTGAAGATTACAGATCTTATCTC
*
107080628 CCTAAGCAGTAGTGAAGCAGATCAAATACGGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAGG
193 CCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAGG
107080693 CTGA
258 CTGA
*
107080697 ATTCACAGATCTTATCTCCCTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCT
1 ATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCT
* ** *
107080762 AAGCAATAGGGTAACAAACTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCA
65 AAGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATC-
* *
107080827 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTCACAGATCTTATCTC
129 AAGACAGTGAGCCTTAACCCCCTAAGCAGTAGAGTAACAAGCTGAAGATT-ACAGATCTTATCTC
* * * * *
107080890 CTTGAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCTTTAAGCAGTAGGGTAACAGG
193 CCTAAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAGG
107080955 CTGAAA
258 CTG--A
* *
107080961 ATTACAGATCTTATCTCCCTAAACAGTAGTGGAACAGATCGAAGACGGTGAGCCTTAACCCCCTA
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTA
* * * *
107081026 AGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGA
66 AGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAA
* *** * * * * * * * * *
107081091 GAACAGTAAGCCTTATGTCCTTGAGCAGCAGCGGAGCAGGCTGAAGATTACAAATCATATCTCCC
131 G-ACAGTGAGCCTTAACCCCCTAAGCAGTAGAGTAACAAGCTGAAGATTACAGATCTTATCTCCC
*
107081156 TAAACAGTAG
195 TAAGCAGTAG
107081166 CGGAGCAAAT
Statistics
Matches: 415, Mismatches: 45, Indels: 16
0.87 0.09 0.03
Matches are distributed among these distances:
261 3 0.01
262 82 0.20
263 300 0.72
264 27 0.07
265 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (261 bp):
ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTA
AGCAGTAGGGTAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCAA
GACAGTGAGCCTTAACCCCCTAAGCAGTAGAGTAACAAGCTGAAGATTACAGATCTTATCTCCCT
AAGCAGTAGTGAAGCAGATCAAAGACGGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTG
A
Found at i:107081537 original size:5 final size:5
Alignment explanation
Indices: 107081536--107081566 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
107081526 GATTTTTATT
107081536 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
107081567 AAATTAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:107081714 original size:35 final size:34
Alignment explanation
Indices: 107081660--107081731 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
107081650 TACTTTGGGA
107081660 TTCCTACTTCAATTCGGAATTGAATTATTCTCTCTT
1 TTCCTACTTCAATTCGGAATTGAATTATT-T-TCTT
* *
107081696 TTCCTATTTCTATT-GGAATTGAATTATTTTCTT
1 TTCCTACTTCAATTCGGAATTGAATTATTTTCTT
107081729 TTC
1 TTC
107081732 TCTTTCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 7 0.21
34 1 0.03
35 14 0.41
36 12 0.35
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.53
Consensus pattern (34 bp):
TTCCTACTTCAATTCGGAATTGAATTATTTTCTT
Found at i:107082023 original size:23 final size:24
Alignment explanation
Indices: 107081997--107082091 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
107081987 AAATGTCCAA
107081997 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
107082020 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
107082048 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
107082077 CCAAAACACACCAGA
1 CCAAAACACACCAGA
107082092 ATAGCATAGA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:107082093 original size:29 final size:28
Alignment explanation
Indices: 107082011--107082094 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
107082001 AACACACCAG
* *
107082011 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
107082039 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
107082067 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
107082095 GCATAGAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:107082158 original size:13 final size:14
Alignment explanation
Indices: 107082135--107082164 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
107082125 GGATATAAAC
107082135 ATCAGCATCTCCAA
1 ATCAGCATCTCCAA
107082149 ATCA-CATCTCCAA
1 ATCAGCATCTCCAA
107082162 ATC
1 ATC
107082165 CCTTCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.37, C:0.37, G:0.03, T:0.23
Consensus pattern (14 bp):
ATCAGCATCTCCAA
Found at i:107082269 original size:17 final size:17
Alignment explanation
Indices: 107082247--107082285 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
107082237 TCTTTTTTTT
*
107082247 TCAATTTCATTTCCATA
1 TCAATTTCAATTCCATA
*
107082264 TCAATTTCAATTCCATT
1 TCAATTTCAATTCCATA
107082281 TCAAT
1 TCAAT
107082286 ATACAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (17 bp):
TCAATTTCAATTCCATA
Found at i:107082272 original size:23 final size:24
Alignment explanation
Indices: 107082245--107082292 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
107082235 CTTCTTTTTT
* *
107082245 TTTCAATTTCATTTCCATAT-CAA
1 TTTCAATTCCATTTCAATATACAA
107082268 TTTCAATTCCATTTCAATATACAA
1 TTTCAATTCCATTTCAATATACAA
107082292 T
1 T
107082293 CAATTCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTCAATTCCATTTCAATATACAA
Found at i:107082312 original size:16 final size:17
Alignment explanation
Indices: 107082273--107082318 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
107082263 ATCAATTTCA
*
107082273 ATTCCATTTCAATATAC
1 ATTCCAATTCAATATAC
*
107082290 AAT-CAATTCAATATAC
1 ATTCCAATTCAATATAC
107082306 -TTCCAATCTCAAT
1 ATTCCAAT-TCAAT
107082319 CCACATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 1 0.04
16 16 0.67
17 7 0.29
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTCCAATTCAATATAC
Found at i:107082339 original size:23 final size:22
Alignment explanation
Indices: 107082292--107082339 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
107082282 CAATATACAA
* *
107082292 TCAATTCAATATACTTCCAATC
1 TCAATCCAATATAATTCCAATC
107082314 TCAATCCACATATAATT-CAATAC
1 TCAATCCA-ATATAATTCCAAT-C
107082337 TCA
1 TCA
107082340 TACTTATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (22 bp):
TCAATCCAATATAATTCCAATC
Found at i:107083176 original size:21 final size:21
Alignment explanation
Indices: 107083137--107083176 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
107083127 ATTTAAGTTA
**
107083137 ATTTAATAATTATAAAATTCT
1 ATTTAATAACAATAAAATTCT
*
107083158 ATTTAATAACAATATAATT
1 ATTTAATAACAATAAAATT
107083177 AATATATTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTAATAACAATAAAATTCT
Found at i:107083584 original size:17 final size:17
Alignment explanation
Indices: 107083564--107083597 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
107083554 ATTCACTAAT
107083564 ATAAT-ATCAATTAAATA
1 ATAATAATCAA-TAAATA
107083581 ATAATAATCAATAAATA
1 ATAATAATCAATAAATA
107083598 TCTTTTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAATCAATAAATA
Found at i:107085359 original size:21 final size:20
Alignment explanation
Indices: 107085307--107085361 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
107085297 ATACTTGATT
*
107085307 ACCAACTTTCAAGACTTGAC
1 ACCAAGTTTCAAGACTTGAC
* *
107085327 -CCAAAGTATCAAGACTTGTGC
1 ACC-AAGTTTCAAGACTTG-AC
107085348 ACCAAGTTTCAAGA
1 ACCAAGTTTCAAGA
107085362 GTGGACAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 2 0.07
20 13 0.46
21 11 0.39
22 2 0.07
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (20 bp):
ACCAAGTTTCAAGACTTGAC
Found at i:107094119 original size:12 final size:12
Alignment explanation
Indices: 107094102--107094126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107094092 TTTTACATAC
107094102 ACTTACTTTAAA
1 ACTTACTTTAAA
107094114 ACTTACTTTAAA
1 ACTTACTTTAAA
107094126 A
1 A
107094127 TTTATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (12 bp):
ACTTACTTTAAA
Found at i:107094136 original size:2 final size:2
Alignment explanation
Indices: 107094129--107094165 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
107094119 CTTTAAAATT
107094129 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107094166 TGACACACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:107094502 original size:17 final size:18
Alignment explanation
Indices: 107094480--107094519 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
107094470 TTGTCATGTA
107094480 TTTTTTGT-ATCATATAT
1 TTTTTTGTCATCATATAT
107094497 TTTTTTGTACCATCATATAT
1 TTTTTTGT--CATCATATAT
107094517 TTT
1 TTT
107094520 ATTAACTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
20 12 0.60
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTTTGTCATCATATAT
Found at i:107101734 original size:26 final size:24
Alignment explanation
Indices: 107101694--107101753 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
107101684 TTATTTCATT
* * *
107101694 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
107101718 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
107101744 AAATAAATAT
1 AAATAAATAT
107101754 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:107101765 original size:22 final size:22
Alignment explanation
Indices: 107101724--107101782 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
107101714 ATAATAAATC
* *
107101724 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
107101744 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
107101766 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
107101783 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:107110216 original size:27 final size:27
Alignment explanation
Indices: 107110186--107110240 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
107110176 CTATAATAGT
*
107110186 AGTTTTAGCTAGAGACTCAGAAGGGGA
1 AGTTTTAGCCAGAGACTCAGAAGGGGA
107110213 AGTTTTAGCCAGAGACTCAGAAGGGGA
1 AGTTTTAGCCAGAGACTCAGAAGGGGA
107110240 A
1 A
107110241 ATTGTAGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.20
Consensus pattern (27 bp):
AGTTTTAGCCAGAGACTCAGAAGGGGA
Found at i:107112128 original size:19 final size:20
Alignment explanation
Indices: 107112090--107112129 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
107112080 ATTATGGAAT
*
107112090 TTATATATAAAAAATTAATA
1 TTATATATAAAAAATAAATA
*
107112110 TTATAT-TAAAATATAAATA
1 TTATATATAAAAAATAAATA
107112129 T
1 T
107112130 GAGTTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTATATATAAAAAATAAATA
Found at i:107112591 original size:30 final size:31
Alignment explanation
Indices: 107112557--107112620 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
107112547 ATTTATTTTA
107112557 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAA-GCAT
*
107112587 TTGTTAATTTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAAGCAT
107112618 TTG
1 TTG
107112621 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 22 0.71
32 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTCTTATTATTTTAGAAGCAT
Found at i:107117873 original size:46 final size:46
Alignment explanation
Indices: 107117806--107117934 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
107117796 TGTAACCCGC
* * * *
107117806 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGACGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
107117852 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
107117898 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
107117935 TGCCCAAATA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:107119409 original size:2 final size:2
Alignment explanation
Indices: 107119402--107119426 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107119392 ACATACATGA
107119402 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
107119427 AACTTAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107122827 original size:49 final size:49
Alignment explanation
Indices: 107122716--107123133 Score: 226
Period size: 49 Copynumber: 8.8 Consensus size: 49
107122706 GGGATCAAAT
* * ** * * *
107122716 GCCGATGCCAGGTCCCAGACATGGTCTTACACTGGCTAGCACAT-T-AAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCGAG
* * * * *
107122764 GTCGATGTCGTGTCCCAGACAGGTTTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * *
107122813 CCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATTG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * *
107122861 TGTCAATGCCATGTCCCAGACAGGTCTTACACTGACAC-CA-A-A-C-AA
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * * * * * *
107122906 GCTGACGCTATGTCCTAGACAGGTCTTGCACT-AGCTTTTATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGAG
* * * * *
107122955 GCCGAT-ACAAGTCCCAGACAGGTCTTACACTGGCTCTCATTTATTG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * *
107123002 TGTCAATGCCATGTCCCAGACAGGTCTTACACTGACAC-CA-A-A-C-AA
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * * * *
107123047 GCTGACGCTATGTCCCAGACAGGTCTTGCACT-AGCT-TGTATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATCGAG
* * * *
107123096 GCCGAT-ACAAGTCCCAGACATGTCTTACACTAACTCTC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTC
107123134 GTCTCAATAC
Statistics
Matches: 267, Mismatches: 80, Indels: 46
0.68 0.20 0.12
Matches are distributed among these distances:
43 2 0.01
44 53 0.20
45 2 0.01
46 4 0.01
47 18 0.07
48 79 0.30
49 109 0.41
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
Found at i:107122987 original size:141 final size:141
Alignment explanation
Indices: 107122774--107123126 Score: 591
Period size: 141 Copynumber: 2.5 Consensus size: 141
107122764 GTCGATGTCG
* * * * * * *
107122774 TGTCCCAGACAGGTTTTACACT-GACTTTCATATATCGAGCCCGATGCCATGTCCCAGACAGGTC
1 TGTCCCAGACAGGTCTTGCACTAG-CTTTTATATCTCGAGGCCGAT-ACAAGTCCCAGACAGGTC
107122838 TTACACTGGCTCTCATTTATTGGTGTCAATGCCATGTCCCAGACAGGTCTTACACTGACACCAAA
64 TTACACTGGCTCTCATTTATTGGTGTCAATGCCATGTCCCAGACAGGTCTTACACTGACACCAAA
107122903 CAAGCTGACGCTA
129 CAAGCTGACGCTA
*
107122916 TGTCCTAGACAGGTCTTGCACTAGCTTTTATATCTCGAGGCCGATACAAGTCCCAGACAGGTCTT
1 TGTCCCAGACAGGTCTTGCACTAGCTTTTATATCTCGAGGCCGATACAAGTCCCAGACAGGTCTT
107122981 ACACTGGCTCTCATTTATTGGTGTCAATGCCATGTCCCAGACAGGTCTTACACTGACACCAAACA
66 ACACTGGCTCTCATTTATTGGTGTCAATGCCATGTCCCAGACAGGTCTTACACTGACACCAAACA
107123046 AGCTGACGCTA
131 AGCTGACGCTA
* *
107123057 TGTCCCAGACAGGTCTTGCACTAGCTTGTATATCTCGAGGCCGATACAAGTCCCAGACATGTCTT
1 TGTCCCAGACAGGTCTTGCACTAGCTTTTATATCTCGAGGCCGATACAAGTCCCAGACAGGTCTT
107123122 ACACT
66 ACACT
107123127 AACTCTCGTC
Statistics
Matches: 199, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
141 161 0.81
142 37 0.19
143 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (141 bp):
TGTCCCAGACAGGTCTTGCACTAGCTTTTATATCTCGAGGCCGATACAAGTCCCAGACAGGTCTT
ACACTGGCTCTCATTTATTGGTGTCAATGCCATGTCCCAGACAGGTCTTACACTGACACCAAACA
AGCTGACGCTA
Found at i:107138910 original size:53 final size:53
Alignment explanation
Indices: 107138834--107138940 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
107138824 AAGTATAATT
107138834 TATTCAATATAATATAACAGTTGATGGCATTAGATGTATGTCATTTTTGTTTA
1 TATTCAATATAATATAACAGTTGATGGCATTAGATGTATGTCATTTTTGTTTA
107138887 TATTCAATATAATATAACAGTTGATGGCATTAGATGTATGTCATTTTTGTTTA
1 TATTCAATATAATATAACAGTTGATGGCATTAGATGTATGTCATTTTTGTTTA
107138940 T
1 T
107138941 GCAGTATTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (53 bp):
TATTCAATATAATATAACAGTTGATGGCATTAGATGTATGTCATTTTTGTTTA
Found at i:107144926 original size:21 final size:20
Alignment explanation
Indices: 107144878--107144920 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
107144868 GGTTTTAATT
107144878 AAAATTATATAAAGTATGAAA
1 AAAATTATATAAAGTAT-AAA
107144899 AAAATTATATAATAAGTATAAA
1 AAAATTATAT-A-AAGTATAAA
107144921 TAATTACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.50
22 4 0.20
23 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAATTATATAAAGTATAAA
Found at i:107146296 original size:30 final size:30
Alignment explanation
Indices: 107146228--107146289 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
107146218 TTAAATTAGT
* *
107146228 AAAGGTAAAATTATATTTTAATCTCTTAAA
1 AAAGATAAAATTATATTTAAATCTCTTAAA
*
107146258 AAAGATAAATATTTTATTTAAATCT-TTAAA
1 AAAGATAAA-ATTATATTTAAATCTCTTAAA
107146288 AA
1 AA
107146290 TTATAAAGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 15 0.54
31 13 0.46
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (30 bp):
AAAGATAAAATTATATTTAAATCTCTTAAA
Found at i:107148719 original size:21 final size:20
Alignment explanation
Indices: 107148695--107148823 Score: 107
Period size: 21 Copynumber: 6.2 Consensus size: 20
107148685 ATTTTACTTG
*
107148695 CTGTTCAGCTCTTTCGAACTT
1 CTGTTCAGCTCTTT-GAGCTT
* * *
107148716 CTGTTAAACTCTTATGAGTTT
1 CTGTTCAGCTCTT-TGAGCTT
*
107148737 CTGTTCAGCTCTTACGAGCTT
1 CTGTTCAGCTCTT-TGAGCTT
* * *
107148758 TTGTTCAACTCTTATGAGTTT
1 CTGTTCAGCTCTT-TGAGCTT
* *
107148779 CTGTTAAGCTCTTACGAGCTT
1 CTGTTCAGCTCTT-TGAGCTT
*
107148800 CTATTCAGCT-TTTGAGCTT
1 CTGTTCAGCTCTTTGAGCTT
107148819 CTGTT
1 CTGTT
107148824 GGAGTATCTG
Statistics
Matches: 86, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
19 10 0.12
20 2 0.02
21 73 0.85
22 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (20 bp):
CTGTTCAGCTCTTTGAGCTT
Found at i:107148768 original size:42 final size:42
Alignment explanation
Indices: 107148695--107148801 Score: 169
Period size: 42 Copynumber: 2.5 Consensus size: 42
107148685 ATTTTACTTG
* *
107148695 CTGTTCAGCTCTTTCGAACTTCTGTTAAACTCTTATGAGTTT
1 CTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTT
* *
107148737 CTGTTCAGCTCTTACGAGCTTTTGTTCAACTCTTATGAGTTT
1 CTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTT
*
107148779 CTGTTAAGCTCTTACGAGCTTCT
1 CTGTTCAGCTCTTACGAGCTTCT
107148802 ATTCAGCTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (42 bp):
CTGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTT
Found at i:107164612 original size:51 final size:51
Alignment explanation
Indices: 107164556--107164748 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 51
107164546 GACGGAAAAG
107164556 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGG-TATGGCATCGGTGCA
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGCA
* * **
107164607 ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGTT-CCGTATAAGACCATAGCTGGGATATGGCATCGGTGCA
** *
107164659 ATGTGATAATGTGATTTTGTATAAGACCATATCTGGGATATGGCATCGGT---
1 ATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGCA
* * * * *
107164709 A--TGATATGTGATCCGTGTAAGACCATGGCGGGGCTATGGC
1 ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGATATGGC
107164749 TTCAGTGTGT
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
46 22 0.18
47 5 0.04
48 4 0.03
50 3 0.02
51 32 0.26
52 20 0.16
53 34 0.28
54 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (51 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGCA
Found at i:107164701 original size:53 final size:50
Alignment explanation
Indices: 107164555--107164713 Score: 201
Period size: 53 Copynumber: 3.1 Consensus size: 50
107164545 TGACGGAAAA
*
107164555 GATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGTATGGCATCGGTGC
1 GATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGTATGGCATCGGTGT
* *
107164606 AATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGTT-CCGTATAAGACCATAGCTGGG-TATGGCATCGGTGT
** * *
107164658 GATGTGATAATGTGATTTTGTATAAGACCATATCTGGGATATGGCATCGGTAT
1 GATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGG-TATGGCATCGGTGT
107164711 GAT
1 GAT
107164714 ATGTGATCCG
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
50 2 0.02
51 32 0.34
52 20 0.21
53 38 0.40
54 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (50 bp):
GATGTGATATGTGTTCCGTATAAGACCATAGCTGGGTATGGCATCGGTGT
Found at i:107164757 original size:99 final size:100
Alignment explanation
Indices: 107164555--107164757 Score: 241
Period size: 99 Copynumber: 2.0 Consensus size: 100
107164545 TGACGGAAAA
* *
107164555 GATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGTATGGCATCGGTGCAATGTGATACGTGT
1 GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGTATGGCATCGGT--AA-GTGATACGTGA
* *
107164620 TCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
63 TCCCGTATAAGACCATAGCGGGGCTATGGCATCAGTGT
** * *
107164658 GATGTGATAATGTGATTTTGTATAAGACCATATCTGGGATATGGCATCGGT-A-TGATATGTGAT
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGG-TATGGCATCGGTAAGTGATACGTGAT
* * *
107164721 -CCGTGTAAGACCATGGCGGGGCTATGGCTTCAGTGT
64 CCCGTATAAGACCATAGCGGGGCTATGGCATCAGTGT
107164757 G
1 G
107164758 TGTTATGTGA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
99 32 0.37
100 9 0.10
102 1 0.01
103 8 0.09
104 25 0.29
105 12 0.14
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (100 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGTATGGCATCGGTAAGTGATACGTGATCC
CGTATAAGACCATAGCGGGGCTATGGCATCAGTGT
Found at i:107169955 original size:17 final size:17
Alignment explanation
Indices: 107169933--107169980 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
107169923 ATTGTTATAT
107169933 ATATTTAAAAATTATAAA
1 ATATTTAAAAATTA-AAA
*
107169951 A-ATTTATTAAAAATAAAA
1 ATATTTA--AAAATTAAAA
107169969 ATATTTAAAAAT
1 ATATTTAAAAAT
107169981 AGAGAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
17 9 0.36
18 5 0.20
19 11 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATTTAAAAATTAAAA
Found at i:107169976 original size:16 final size:17
Alignment explanation
Indices: 107169946--107169981 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
107169936 TTTAAAAATT
*
107169946 ATAAAAATTTATTAAAA
1 ATAAAAATATATTAAAA
107169963 ATAAAAATAT-TTAAAA
1 ATAAAAATATATTAAAA
107169979 ATA
1 ATA
107169982 GAGAAAATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAAATATATTAAAA
Found at i:107171065 original size:20 final size:20
Alignment explanation
Indices: 107171027--107171064 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
107171017 TTCTTTGTCC
*
107171027 TTTTTCATTTTTTTATTTTG
1 TTTTTCATTTATTTATTTTG
107171047 TTTTTC-TTTATTTATTTT
1 TTTTTCATTTATTTATTTT
107171065 TTCAGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.11, C:0.05, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTCATTTATTTATTTTG
Found at i:107171171 original size:17 final size:16
Alignment explanation
Indices: 107171127--107171176 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
107171117 TTAAATGTAT
107171127 ATTTTAAATTTTTTATA
1 ATTTTAAATTTTTTA-A
*
107171144 ATATT--ATTTTTTAA
1 ATTTTAAATTTTTTAA
107171158 ATTTTAAATATTTTTAA
1 ATTTTAAAT-TTTTTAA
107171175 AT
1 AT
107171177 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 5 0.18
15 8 0.29
16 2 0.07
17 13 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTAAATTTTTTAA
Found at i:107171174 original size:10 final size:10
Alignment explanation
Indices: 107171128--107171208 Score: 55
Period size: 11 Copynumber: 8.1 Consensus size: 10
107171118 TAAATGTATA
*
107171128 TTTTAAATTT
1 TTTTAAATAT
107171138 TTTATAATATTAT
1 TTT-TAA-A-TAT
*
107171151 TTTTTAA-A-
1 TTTTAAATAT
107171159 TTTTAAATAT
1 TTTTAAATAT
107171169 TTTTAAATATT
1 TTTTAAATA-T
107171180 TTTTAAA-A-
1 TTTTAAATAT
107171188 -TTTAAATAT
1 TTTTAAATAT
*
107171197 ATTTTTAATAT
1 -TTTTAAATAT
107171208 T
1 T
107171209 ATAAAACATT
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
7 6 0.11
8 7 0.12
9 2 0.04
10 14 0.25
11 20 0.35
12 3 0.05
13 5 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTAAATAT
Found at i:107171184 original size:11 final size:11
Alignment explanation
Indices: 107171159--107171190 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
107171149 ATTTTTTAAA
107171159 TTTTAAATA-T
1 TTTTAAATATT
107171169 TTTTAAATATT
1 TTTTAAATATT
107171180 TTTTAAA-ATT
1 TTTTAAATATT
107171190 T
1 T
107171191 AAATATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 13 0.62
11 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAATATT
Found at i:107171190 original size:20 final size:20
Alignment explanation
Indices: 107171159--107171213 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 20
107171149 ATTTTTTAAA
107171159 TTTTAAATATTTTTAAATAT-T
1 TTTTAAATA--TTTAAATATAT
107171180 TTTTAAA-ATTTAAATATAT
1 TTTTAAATATTTAAATATAT
107171199 TTTT-AATATTATAAA
1 TTTTAAATATT-TAAA
107171214 ACATTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 11 0.35
19 8 0.26
20 5 0.16
21 7 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTAAATATTTAAATATAT
Found at i:107171201 original size:29 final size:28
Alignment explanation
Indices: 107171129--107171208 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 28
107171119 AAATGTATAT
* *
107171129 TTTAAATTTTTTATAATATTATTTTTTAAAT
1 TTTAAATATTTT-TAA-A-TATTTTTTAAAA
107171160 TTTAAATATTTTTAAATATTTTTTAAAA
1 TTTAAATATTTTTAAATATTTTTTAAAA
*
107171188 TTTAAATATATTTTTAATATT
1 TTTAAATAT-TTTTAAATATT
107171209 ATAAAACATT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
28 20 0.44
29 11 0.24
30 3 0.07
31 11 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTAAATATTTTTAAATATTTTTTAAAA
Found at i:107171219 original size:19 final size:19
Alignment explanation
Indices: 107171170--107171219 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
107171160 TTTAAATATT
*
107171170 TTTAAATA-TTTTTTAAAA
1 TTTAAATACATTTTTAAAA
* *
107171188 TTTAAATATATTTTTAATA
1 TTTAAATACATTTTTAAAA
107171207 TTATAAA-ACATTT
1 TT-TAAATACATTT
107171220 AAAATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.30
19 15 0.56
20 4 0.15
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTAAATACATTTTTAAAA
Found at i:107171225 original size:30 final size:30
Alignment explanation
Indices: 107171156--107171229 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
107171146 ATTATTTTTT
* * *
107171156 AAATTTTAA-ATATTTTTAAATATTTTTTA
1 AAATTTAAATATATTTTTAAATATTTATAA
107171185 AAATTTAAATATATTTTT-AATA-TTATAA
1 AAATTTAAATATATTTTTAAATATTTATAA
107171213 AACATTTAAAATATATT
1 AA-ATTT-AAATATATT
107171230 ATTTTTAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 6 0.15
29 16 0.41
30 17 0.44
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
AAATTTAAATATATTTTTAAATATTTATAA
Found at i:107171301 original size:22 final size:23
Alignment explanation
Indices: 107171267--107171321 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
107171257 TATTATTTGG
*
107171267 TTTATAATATTTTAAAT-ATATAT
1 TTTAAAAT-TTTTAAATGATATAT
* *
107171290 TTTAAAATTTTTAAATGTTATTT
1 TTTAAAATTTTTAAATGATATAT
107171313 TTTAAAATT
1 TTTAAAATT
107171322 ATTTTTAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 8 0.29
23 20 0.71
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTAAAATTTTTAAATGATATAT
Found at i:107173498 original size:40 final size:39
Alignment explanation
Indices: 107173454--107173568 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 39
107173444 TGAGTTACCA
* * *
107173454 TAGTGAATCAGGAACACATCCTATCCACTTTATATATT-TC
1 TAGTGAATCAGGAATAAATCCTATTCACTTTA-AT-TTCTC
* * *
107173494 TAGTGAATCAGGAATAAATCATATTTACTTTAATTTCTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTCTC
107173533 TAGTGAATCAGGAATAAATCCTATTCACTTTTAATT
1 TAGTGAATCAGGAATAAATCCTATTCAC-TTTAATT
107173569 CTCGAGAAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
38 2 0.03
39 29 0.45
40 34 0.52
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (39 bp):
TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTCTC
Found at i:107174451 original size:14 final size:15
Alignment explanation
Indices: 107174423--107174453 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
107174413 CCCCAATTTC
107174423 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
107174438 TCCCTTTT-TTTCTT
1 TCCCTTTTCTTTCTT
107174452 TC
1 TC
107174454 TTTCTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:107174528 original size:25 final size:25
Alignment explanation
Indices: 107174466--107174516 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
107174456 TCTTTCTCCC
* *
107174466 CTGTTTTTATTTTTTTGTTTCTATT
1 CTGTTCTTCTTTTTTTGTTTCTATT
*
107174491 CTGTTCTTCTTTTTTTTTTTCT-TT
1 CTGTTCTTCTTTTTTTGTTTCTATT
107174515 CT
1 CT
107174517 TATGCTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.04, C:0.14, G:0.06, T:0.76
Consensus pattern (25 bp):
CTGTTCTTCTTTTTTTGTTTCTATT
Found at i:107174699 original size:8 final size:8
Alignment explanation
Indices: 107174686--107174716 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
107174676 TTTAATTAAT
107174686 ATAATATA
1 ATAATATA
107174694 ATAATATA
1 ATAATATA
107174702 ATAATATA
1 ATAATATA
107174710 ATAATAT
1 ATAATAT
107174717 TTACTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:107174767 original size:49 final size:49
Alignment explanation
Indices: 107174655--107174768 Score: 119
Period size: 49 Copynumber: 2.3 Consensus size: 49
107174645 TGTCATAATT
* * *
107174655 TAATTTAAT-TTATTTACTTTATTTAATTAATATAATATAATAATATAA
1 TAATATAATATTATTTACTTAATTTAAGTAATATAATATAATAATATAA
* *
107174703 TAATATAATAATATTTACTTAAATTATAAGTAA-AT-ATATAATAAT-TAC
1 TAATATAATATTATTTACTT-AATT-TAAGTAATATAATATAATAATATAA
*
107174751 TAATATATATGTTATTTA
1 TAATATA-ATATTATTTA
107174769 TACACATGGA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
48 17 0.31
49 27 0.49
50 5 0.09
51 6 0.11
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (49 bp):
TAATATAATATTATTTACTTAATTTAAGTAATATAATATAATAATATAA
Found at i:107177498 original size:149 final size:149
Alignment explanation
Indices: 107177228--107177516 Score: 488
Period size: 149 Copynumber: 1.9 Consensus size: 149
107177218 TGTTAAGTAT
* * *
107177228 AATTTTGTCTTTACCTATTTACAAGTGGCTACGAATATGGTTGGTACCTAGCAGCCGCTAGAAAC
1 AATTTTGTCTTTACCTATTTACAAGTGGCTACAAATATAGTTGGTACCTAGCAGCCACTAGAAAC
* *
107177293 GGTATCCTGTATAGAGCCTAGGACTACAATAGACCCAAACAACCAGCCATGTTACTAATCCTATG
66 GGTATCCTGTATAGAGCCTAAGACTACAACAGACCCAAACAACCAGCCATGTTACTAATCCTATG
107177358 TTTTGTTGCTAATTATGAG
131 TTTTGTTGCTAATTATGAG
*
107177377 AATTTTGTTTTTACCTATTTACAAGTGGCTACAAATATAGTTGGTACCTAGCAGCCACTAGAAAC
1 AATTTTGTCTTTACCTATTTACAAGTGGCTACAAATATAGTTGGTACCTAGCAGCCACTAGAAAC
* * * *
107177442 GGTATCTTGTATAGAGCCTAAGACTGCAGCAGACCCAAACAATCAGCCATGTTACTAATCCTATG
66 GGTATCCTGTATAGAGCCTAAGACTACAACAGACCCAAACAACCAGCCATGTTACTAATCCTATG
107177507 TTTTGTTGCT
131 TTTTGTTGCT
107177517 CGGCAAAGCT
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
149 130 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (149 bp):
AATTTTGTCTTTACCTATTTACAAGTGGCTACAAATATAGTTGGTACCTAGCAGCCACTAGAAAC
GGTATCCTGTATAGAGCCTAAGACTACAACAGACCCAAACAACCAGCCATGTTACTAATCCTATG
TTTTGTTGCTAATTATGAG
Found at i:107179296 original size:20 final size:19
Alignment explanation
Indices: 107179253--107179297 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
107179243 AAATCATTGG
*
107179253 TTTTTTAAGAAATAAATCT
1 TTTTTTAACAAATAAATCT
* *
107179272 GTTTTTAACAAATAAATCC
1 TTTTTTAACAAATAAATCT
107179291 TTTTTTA
1 TTTTTTA
107179298 CTTTTTTCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (19 bp):
TTTTTTAACAAATAAATCT
Found at i:107179588 original size:24 final size:25
Alignment explanation
Indices: 107179559--107179619 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
107179549 AAAATATTAT
*
107179559 AAAATAAATTTAAAAAAATAAAA-A
1 AAAATAAATATAAAAAAATAAAAGA
* *
107179583 AGAATAAACCAATAAAAAAATAAAAGA
1 AAAATAAA--TATAAAAAAATAAAAGA
107179610 AAAATAAATA
1 AAAATAAATA
107179620 AAATATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
24 7 0.24
25 1 0.03
26 13 0.45
27 8 0.28
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.16
Consensus pattern (25 bp):
AAAATAAATATAAAAAAATAAAAGA
Found at i:107179690 original size:12 final size:13
Alignment explanation
Indices: 107179675--107179739 Score: 59
Period size: 13 Copynumber: 5.2 Consensus size: 13
107179665 GAATATCTTC
107179675 AAAAATA-ATTTA
1 AAAAATATATTTA
*
107179687 AAAAATAATATATTT
1 AAAAAT-ATAT-TTA
107179702 AAAAATATATTT-
1 AAAAATATATTTA
107179714 -AAAA-AT-TTTA
1 AAAAATATATTTA
*
107179724 AAATATATATTTA
1 AAAAATATATTTA
107179737 AAA
1 AAA
107179740 TATTATAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
9 3 0.07
10 2 0.05
11 7 0.16
12 8 0.18
13 10 0.23
14 6 0.14
15 8 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAATATATTTA
Found at i:107179705 original size:27 final size:28
Alignment explanation
Indices: 107179666--107179718 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
107179656 AAAACGTTCG
*
107179666 AATATCTTCAAAAATA-ATTTAAAAAAT
1 AATATATTCAAAAATATATTTAAAAAAT
*
107179693 AATATATTTAAAAATATATTTAAAAA
1 AATATATTCAAAAATATATTTAAAAA
107179719 TTTTAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (28 bp):
AATATATTCAAAAATATATTTAAAAAAT
Found at i:107179723 original size:21 final size:23
Alignment explanation
Indices: 107179693--107179748 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
107179683 TTTAAAAAAT
107179693 AATATATTTAAAA-ATATATTTAA
1 AATAT-TTTAAAATATATATTTAA
107179716 AA-ATTTTAAAATATATATTTAA
1 AATATTTTAAAATATATATTTAA
*
107179738 AATATTATAAA
1 AATATTTTAAA
107179749 CCAAATAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 7 0.23
22 14 0.47
23 9 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AATATTTTAAAATATATATTTAA
Found at i:107179835 original size:21 final size:21
Alignment explanation
Indices: 107179802--107179850 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
107179792 TTTTAAATGT
107179802 TTTATAATATTAAAAAACAATA
1 TTTA-AATATTAAAAAACAATA
* *
107179824 TTTAAATTTTAAAAAATAATA
1 TTTAAATATTAAAAAACAATA
107179845 TTTAAA
1 TTTAAA
107179851 ATATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTAAATATTAAAAAACAATA
Found at i:107179848 original size:14 final size:15
Alignment explanation
Indices: 107179831--107179866 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
107179821 ATATTTAAAT
107179831 TTTAAAAAATA-ATA
1 TTTAAAAAATATATA
*
107179845 TTTAAAATATATATA
1 TTTAAAAAATATATA
107179860 TTTAAAA
1 TTTAAAA
107179867 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTTAAAAAATATATA
Found at i:107179860 original size:15 final size:14
Alignment explanation
Indices: 107179831--107179867 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
107179821 ATATTTAAAT
*
107179831 TTTAAAAAATAATA
1 TTTAAAATATAATA
107179845 TTTAAAATATATATA
1 TTTAAAATATA-ATA
107179860 TTTAAAAT
1 TTTAAAAT
107179868 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAAATATAATA
Found at i:107179864 original size:36 final size:36
Alignment explanation
Indices: 107179805--107179889 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 36
107179795 TAAATGTTTT
107179805 ATAATA-TTAAAAAACAATATTT-AAATTTTAAAAA
1 ATAATATTTAAAAAACAATATTTAAAATTTTAAAAA
* *
107179839 ATAATATTTAAAATATATATATTTAAAATTTTAAAAA
1 ATAATATTTAAAAAACA-ATATTTAAAATTTTAAAAA
*
107179876 ATTATATTATAAAA
1 ATAATATT-TAAAA
107179890 CGTTTAGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
34 6 0.14
35 8 0.18
36 6 0.14
37 19 0.43
38 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (36 bp):
ATAATATTTAAAAAACAATATTTAAAATTTTAAAAA
Found at i:107179874 original size:23 final size:23
Alignment explanation
Indices: 107179845--107179889 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
107179835 AAAAATAATA
*
107179845 TTTAAAATATATATATT-TAAAAT
1 TTTAAAAAAT-TATATTATAAAAT
107179868 TTTAAAAAATTATATTATAAAA
1 TTTAAAAAATTATATTATAAAA
107179890 CGTTTAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTAAAAAATTATATTATAAAAT
Found at i:107179895 original size:24 final size:23
Alignment explanation
Indices: 107179845--107179895 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
107179835 AAAAATAATA
* *
107179845 TTTAAAATATATATATTTAAAAT
1 TTTAAAAAATATATATTTAAAAG
107179868 TTTAAAAAAT-TATATTATAAAACG
1 TTTAAAAAATATATATT-TAAAA-G
107179892 TTTA
1 TTTA
107179896 GAATATGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTAAAAAATATATATTTAAAAG
Found at i:107192046 original size:40 final size:38
Alignment explanation
Indices: 107191926--107192057 Score: 141
Period size: 35 Copynumber: 3.6 Consensus size: 38
107191916 TCCTCATTGA
* * *
107191926 AATACCATACTTACATTTTACAACTCGGTATGG--GA-
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
* **
107191961 AATATCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGA--TGAT
107192001 AATACCATACCTACATTTCACAACTCAGTATGGATG--
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
*
107192037 -ATACTATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
107192058 CTTTTCCATG
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
35 47 0.57
38 2 0.02
39 2 0.02
40 31 0.38
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (38 bp):
AATACCATACCTACATTTCACAACTCAGTATGGATGAT
Found at i:107193738 original size:15 final size:14
Alignment explanation
Indices: 107193712--107193745 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
107193702 CATAGATTTC
107193712 ACAATCAATTCAAT
1 ACAATCAATTCAAT
*
107193726 TCAATCAAATTCAAT
1 ACAATC-AATTCAAT
107193741 ACAAT
1 ACAAT
107193746 ACTGAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
ACAATCAATTCAAT
Found at i:107193816 original size:32 final size:32
Alignment explanation
Indices: 107193775--107193835 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
107193765 CATAATTTCA
* *
107193775 TAAATACTCAATTCAATATTAAAATACTATAC
1 TAAACACTCAATTCAATATCAAAATACTATAC
107193807 TAAACACTCAATTCAATATCAAAATACTA
1 TAAACACTCAATTCAATATCAAAATACTA
107193836 CACTTACCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (32 bp):
TAAACACTCAATTCAATATCAAAATACTATAC
Found at i:107194501 original size:25 final size:25
Alignment explanation
Indices: 107194472--107194519 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
107194462 ACTTTTTCTC
* *
107194472 CTTTCTTTCTCTTTTTCGTTTCTTT
1 CTTTCATTCTCTGTTTCGTTTCTTT
107194497 CTTTCATTCTCTGTTTCGTTTCT
1 CTTTCATTCTCTGTTTCGTTTCT
107194520 GCTTTGGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.02, C:0.25, G:0.06, T:0.67
Consensus pattern (25 bp):
CTTTCATTCTCTGTTTCGTTTCTTT
Found at i:107194593 original size:5 final size:5
Alignment explanation
Indices: 107194583--107194617 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
107194573 GTTTTATTAT
107194583 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
107194618 TATTTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:107197212 original size:5 final size:5
Alignment explanation
Indices: 107197202--107197226 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
107197192 GTCATCAGGA
107197202 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
107197227 GAAATTGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:107197218 original size:54 final size:53
Alignment explanation
Indices: 107197154--107197276 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 53
107197144 CATGTTTAGC
* *
107197154 AAAGAAAAGAAGAGAAAAAGACATTAGGAAGAAGAAAGGTCATCAG-GAAAAAG
1 AAAGAAAAGAAGAGAAAAAGAAATTAGGAAGAAGAAAGGT-AACAGAGAAAAAG
* * *
107197207 AAAAGAAAAGAAAAGAAAAGGAAATTGGGAAGAAGAAAGGTAACAGAGAAAAAG
1 -AAAGAAAAGAAGAGAAAAAGAAATTAGGAAGAAGAAAGGTAACAGAGAAAAAG
*
107197261 AAAGAAAAAAAG-GAAA
1 AAAGAAAAGAAGAGAAA
107197277 TAGTTTTTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
52 4 0.07
53 14 0.23
54 43 0.70
ACGTcount: A:0.65, C:0.03, G:0.26, T:0.06
Consensus pattern (53 bp):
AAAGAAAAGAAGAGAAAAAGAAATTAGGAAGAAGAAAGGTAACAGAGAAAAAG
Found at i:107201073 original size:2 final size:2
Alignment explanation
Indices: 107201066--107201097 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
107201056 GGTCTGAAAA
107201066 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107201098 TTTCTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107204875 original size:20 final size:21
Alignment explanation
Indices: 107204852--107204890 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
107204842 GTTTTTTCTA
*
107204852 ATTTTTTA-CTTTATTTTAAT
1 ATTTTTTATCTTAATTTTAAT
107204872 ATTTTTTATCTTAATTTTA
1 ATTTTTTATCTTAATTTTA
107204891 GAGTGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTTATCTTAATTTTAAT
Found at i:107209495 original size:19 final size:19
Alignment explanation
Indices: 107209471--107209510 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
107209461 AGCTCCCATG
107209471 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
107209490 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
107209509 TA
1 TA
107209511 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:107213580 original size:20 final size:21
Alignment explanation
Indices: 107213542--107213581 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
107213532 TTATAAAATT
*
107213542 ATTAAAATATTTTTCTTATAA
1 ATTAAAATATATTTCTTATAA
*
107213563 ATTAAATTATATTT-TTATA
1 ATTAAAATATATTTCTTATA
107213582 TAATAAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTAAAATATATTTCTTATAA
Found at i:107216772 original size:14 final size:14
Alignment explanation
Indices: 107216749--107216781 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
107216739 AATAAATTGT
107216749 TTAA-TCTAATTAA
1 TTAATTCTAATTAA
107216762 TTAATTCTAATTAA
1 TTAATTCTAATTAA
*
107216776 ATAATT
1 TTAATT
107216782 ATCGCAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TTAATTCTAATTAA
Found at i:107221056 original size:43 final size:43
Alignment explanation
Indices: 107220975--107221058 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
107220965 AAGTTGTACA
* **
107220975 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCATATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACATATATCG
*
107221018 ATGCC-ACTGTCCCAGATAGGGTCTTAC-TCGTAAACATATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACATATAT
107221059 TGGAATCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACATATATCG
Found at i:107227780 original size:15 final size:15
Alignment explanation
Indices: 107227760--107227789 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
107227750 TGTCATTCAT
107227760 AATGAACTAGATGTC
1 AATGAACTAGATGTC
107227775 AATGAACTAGATGTC
1 AATGAACTAGATGTC
107227790 CGAATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AATGAACTAGATGTC
Found at i:107227871 original size:2 final size:2
Alignment explanation
Indices: 107227864--107227894 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
107227854 ATAAAACTAA
107227864 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107227895 ACTTAACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107236778 original size:28 final size:27
Alignment explanation
Indices: 107236747--107236799 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
107236737 CATTTCTTTT
* * *
107236747 TAAAATATAACTTATTTTAATTTTTTAA
1 TAAAATA-AAATTAATTTAATATTTTAA
107236775 TAAAATAAAATTAATTTAATATTTT
1 TAAAATAAAATTAATTTAATATTTT
107236800 CTAGGTTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
TAAAATAAAATTAATTTAATATTTTAA
Found at i:107243220 original size:23 final size:23
Alignment explanation
Indices: 107243190--107243240 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
107243180 GTGTAGGGTT
107243190 GGGTGGGTGTTTTAAACCTCACA
1 GGGTGGGTGTTTTAAACCTCACA
107243213 GGGTGGGTGTTTTAAACCTCACA
1 GGGTGGGTGTTTTAAACCTCACA
*
107243236 TGGTG
1 GGGTG
107243241 TGTTGGGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.31
Consensus pattern (23 bp):
GGGTGGGTGTTTTAAACCTCACA
Found at i:107249545 original size:22 final size:23
Alignment explanation
Indices: 107249513--107249561 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
107249503 TGAGTTTAGA
107249513 AAAACCCTAAAAT-CTAAACCCT
1 AAAACCCTAAAATCCTAAACCCT
*
107249535 AAAACCTTAAAATCCTAAACCCT
1 AAAACCCTAAAATCCTAAACCCT
107249558 AAAA
1 AAAA
107249562 GGTTCTAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (23 bp):
AAAACCCTAAAATCCTAAACCCT
Found at i:107250079 original size:2 final size:2
Alignment explanation
Indices: 107250072--107250097 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
107250062 TTGTGTTGAA
107250072 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
107250098 GTATGTACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107252366 original size:21 final size:21
Alignment explanation
Indices: 107252336--107252378 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
107252326 ATTTTACTAA
*
107252336 ACAACGATAATCGAGACCACC
1 ACAACAATAATCGAGACCACC
107252357 ACAACAATAATCGAGACCACC
1 ACAACAATAATCGAGACCACC
107252378 A
1 A
107252379 TTCTCTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.33, G:0.12, T:0.09
Consensus pattern (21 bp):
ACAACAATAATCGAGACCACC
Found at i:107259145 original size:227 final size:228
Alignment explanation
Indices: 107258744--107259183 Score: 620
Period size: 227 Copynumber: 1.9 Consensus size: 228
107258734 CTTCGTTCCA
* * *
107258744 TCCCACTGCATCTTCAGGGGGATATGGTTTGCGACTTAAATCTGCTCCACTACAATTTCAGAGAG
1 TCCCACTGCATCTTCAGGGAGATATGGTTTGCGACTTAAATCTGCTCCACTACAACTTCAGAGAA
* * * * * *
107258809 ATAAGATTCGCCATGGTAACTTGATTCGGCCTACTGCAACTTCAGAGGTATAGGATTTATAGCCT
66 ATAAGATTCGCCATGGTAACTTCATCCGACCCACTGCAACTTCAGAGGCATAGGACTTATAGCCT
* *
107258874 TAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACTATCTTTAGTCTATTCCACTGCAACT
131 TAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACTATCTTCAGTCTATTCCACTACAACT
**
107258939 TCAGGGAGTTAAGACTTGGTAATTTCAAAGTAC
196 TCAGGGAAATAAGACTTGGTAATTTCAAAGTAC
* *
107258972 TCCC-CTGCATCTTCAGGGAGATAAT-GTTAATG-G-CTTTAATCTGCTCTACTACAACTTCAGA
1 TCCCACTGCATCTTCAGGGAGAT-ATGGTT--TGCGACTTAAATCTGCTCCACTACAACTTCAGA
* * *
107259033 TAAATAAGATTTGCCATGGTAGATTTCATCCGACCCA-TGCAACTTCAGAGGCATAGGACTTATA
63 GAAATAAGATTCGCCATGGTA-ACTTCATCCGACCCACTGCAACTTCAGAGGCATAGGACTTATA
* * *
107259097 GCCTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTTTATTCCACTAC
127 GCCTTAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACTATCTTCAGTCTATTCCACTAC
107259162 AACTTCAGGGAAATAAGACTTG
192 AACTTCAGGGAAATAAGACTTG
107259184 TATTTTTAAC
Statistics
Matches: 187, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
227 168 0.90
228 17 0.09
229 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (228 bp):
TCCCACTGCATCTTCAGGGAGATATGGTTTGCGACTTAAATCTGCTCCACTACAACTTCAGAGAA
ATAAGATTCGCCATGGTAACTTCATCCGACCCACTGCAACTTCAGAGGCATAGGACTTATAGCCT
TAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTACTATCTTCAGTCTATTCCACTACAACT
TCAGGGAAATAAGACTTGGTAATTTCAAAGTAC
Found at i:107272105 original size:15 final size:15
Alignment explanation
Indices: 107272085--107272153 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
107272075 GTATCTTGGG
107272085 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
107272100 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
107272115 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
107272130 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
107272145 TTTCTTTAT
1 TTTCTTTAT
107272154 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:107272154 original size:30 final size:30
Alignment explanation
Indices: 107272076--107272163 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
107272066 CATAGTATCG
* * * *
107272076 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
107272106 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
107272136 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
107272164 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:107278538 original size:13 final size:14
Alignment explanation
Indices: 107278520--107278548 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
107278510 GAGGAAATGC
107278520 AATGAAATGAT-GT
1 AATGAAATGATCGT
107278533 AATGAAATGATCGT
1 AATGAAATGATCGT
107278547 AA
1 AA
107278549 GTTTAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.28
Consensus pattern (14 bp):
AATGAAATGATCGT
Found at i:107281216 original size:15 final size:15
Alignment explanation
Indices: 107281181--107281217 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
107281171 GAATACATGC
107281181 TTGTTGTTATTTCTA
1 TTGTTGTTATTTCTA
107281196 TT-TTGTCTATTTCT-
1 TTGTTGT-TATTTCTA
107281210 TTGTTGTT
1 TTGTTGTT
107281218 TCTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.08, C:0.08, G:0.14, T:0.70
Consensus pattern (15 bp):
TTGTTGTTATTTCTA
Found at i:107281555 original size:25 final size:26
Alignment explanation
Indices: 107281510--107281566 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
107281500 TTTATTGTAT
*
107281510 TTTGGGTTTTGTTTTTGGTTTATTGG
1 TTTGGGTTTTATTTTTGGTTTATTGG
*
107281536 TTTGGG-TTTATTTTTGGTTTGTTGG
1 TTTGGGTTTTATTTTTGGTTTATTGG
*
107281561 TCTGGG
1 TTTGGG
107281567 CCAAAATTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.79
26 6 0.21
ACGTcount: A:0.04, C:0.02, G:0.33, T:0.61
Consensus pattern (26 bp):
TTTGGGTTTTATTTTTGGTTTATTGG
Found at i:107288816 original size:2 final size:2
Alignment explanation
Indices: 107288809--107288844 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
107288799 ATGCAAGGGT
107288809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107288845 AAAGTCGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107289006 original size:15 final size:16
Alignment explanation
Indices: 107288988--107289020 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107288978 TATTTGAATA
107288988 TTTAT-AATTAAAATT
1 TTTATAAATTAAAATT
*
107289003 TTTATAAATTAATATT
1 TTTATAAATTAAAATT
107289019 TT
1 TT
107289021 ATTATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTATAAATTAAAATT
Found at i:107290430 original size:22 final size:23
Alignment explanation
Indices: 107290405--107290451 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
107290395 AAAATTATGT
* *
107290405 TAAAATATTC-AAAAATTTAAAA
1 TAAAAAATTCTAAAAATTCAAAA
107290427 TAAAAAATTCTAAAAATTCAAAA
1 TAAAAAATTCTAAAAATTCAAAA
107290450 TA
1 TA
107290452 TATATGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAAATTCTAAAAATTCAAAA
Found at i:107291037 original size:23 final size:24
Alignment explanation
Indices: 107291011--107291059 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
107291001 AAAAACTATG
107291011 TGTTTTGAAATTT-T-AAAAAATAA
1 TGTTTT-AAATTTATAAAAAAATAA
107291034 TGTTTTAAATTTATGAAAAAAATAA
1 TGTTTTAAATTTAT-AAAAAAATAA
107291059 T
1 T
107291060 ACATAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.26
23 7 0.30
25 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (24 bp):
TGTTTTAAATTTATAAAAAAATAA
Found at i:107292163 original size:2 final size:2
Alignment explanation
Indices: 107292156--107292186 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
107292146 AGGTGAAACA
107292156 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107292187 GTTTATGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107292344 original size:19 final size:19
Alignment explanation
Indices: 107292308--107292370 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
107292298 ATTCAATAAT
107292308 ATAAT-AAATTATTA-TTTA
1 ATAATAAAATT-TTACTTTA
*
107292326 ATATTAAAATTTTACTTTA
1 ATAATAAAATTTTACTTTA
* * *
107292345 ACAATAAAATTTAACATTA
1 ATAATAAAATTTTACTTTA
107292364 ATAATAA
1 ATAATAA
107292371 TTTTAAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
18 7 0.19
19 30 0.81
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
ATAATAAAATTTTACTTTA
Found at i:107293651 original size:7 final size:7
Alignment explanation
Indices: 107293626--107293682 Score: 55
Period size: 7 Copynumber: 8.0 Consensus size: 7
107293616 AATTAATACG
107293626 ATTTTAT
1 ATTTTAT
107293633 ATATTT-T
1 AT-TTTAT
107293640 ATTTTAT
1 ATTTTAT
107293647 ATTTTATT
1 ATTTTA-T
*
107293655 AGTTTA-
1 ATTTTAT
*
107293661 ATAGTTAT
1 AT-TTTAT
107293669 ATTTTAT
1 ATTTTAT
107293676 ATTTTAT
1 ATTTTAT
107293683 TCATAAACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 4 0.10
7 26 0.63
8 11 0.27
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (7 bp):
ATTTTAT
Found at i:107294705 original size:18 final size:16
Alignment explanation
Indices: 107294662--107294701 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
107294652 TATCTGTAAC
*
107294662 TTTTTTTAAAATTTTA
1 TTTTTTTGAAATTTTA
107294678 TTTTTTTGAAATTTTA
1 TTTTTTTGAAATTTTA
107294694 TTATTTTT
1 TT-TTTTT
107294702 TGAATTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTTTTGAAATTTTA
Found at i:107294707 original size:17 final size:16
Alignment explanation
Indices: 107294671--107294734 Score: 67
Period size: 18 Copynumber: 3.8 Consensus size: 16
107294661 CTTTTTTTAA
107294671 AATTTTAT-TTTTTTG
1 AATTTTATATTTTTTG
107294686 AAATTTTATTATTTTTTG
1 -AATTTTA-TATTTTTTG
*
107294704 AATTTGTATACTTTTTAG
1 AATTT-TATA-TTTTTTG
107294722 AATATTTATATTT
1 AAT-TTTATATTT
107294735 ATATTTTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
16 7 0.17
17 11 0.26
18 22 0.52
19 2 0.05
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (16 bp):
AATTTTATATTTTTTG
Found at i:107297202 original size:93 final size:93
Alignment explanation
Indices: 107297089--107297260 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
107297079 GCCCATAAGT
* *
107297089 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
107297154 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
107297182 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
107297247 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
107297261 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:107297256 original size:46 final size:46
Alignment explanation
Indices: 107297081--107297256 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
107297071 TGTAACCCGC
* * *
107297081 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
107297127 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
107297173 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
107297220 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
107297257 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:107300682 original size:4 final size:4
Alignment explanation
Indices: 107300668--107300697 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
107300658 TTAATTCTTA
107300668 ACAT AACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT -ACAT ACAT ACAT ACAT ACAT ACAT A
107300698 TAAGCAACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:107302211 original size:18 final size:18
Alignment explanation
Indices: 107302190--107302232 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
107302180 CTTATTTCGT
107302190 TTTCTATTCTGTTTG-TTC
1 TTTCTATTCT-TTTGTTTC
*
107302208 TTTCTTTTCTTTTGTTTC
1 TTTCTATTCTTTTGTTTC
107302226 TTT-TATT
1 TTTCTATT
107302233 TCATTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.05, C:0.14, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTCTATTCTTTTGTTTC
Found at i:107302269 original size:5 final size:5
Alignment explanation
Indices: 107302259--107302294 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
107302249 CTTTATATTT
107302259 TAATA TAATA TAATA TAATA TAATA TAATA TAATA T
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA T
107302295 TTACTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Done.