Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 369 of 444
Found at i:107308146 original size:20 final size:20
Alignment explanation
Indices: 107308109--107308147 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
107308099 TGAAAAAAAT
*
107308109 AATTATAATATTTAATTTAG
1 AATTATAATATATAATTTAG
107308129 AATTATAAT-TATATATTTA
1 AATTATAATATATA-ATTTA
107308148 AAAGTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
AATTATAATATATAATTTAG
Found at i:107308173 original size:17 final size:18
Alignment explanation
Indices: 107308135--107308175 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
107308125 TTAGAATTAT
*
107308135 AATTATATATTTAAAAGT
1 AATTATATATTTAAAAGA
107308153 AATTATA-ATTTAATAA-A
1 AATTATATATTTAA-AAGA
107308170 AATTAT
1 AATTAT
107308176 GATAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTATATATTTAAAAGA
Found at i:107308181 original size:44 final size:45
Alignment explanation
Indices: 107308133--107308223 Score: 148
Period size: 44 Copynumber: 2.0 Consensus size: 45
107308123 ATTTAGAATT
*
107308133 ATAATTATATATTTAAAAGTAATTATAATTTA-ATAAAAATTATG
1 ATAATTATATATTTAAAAATAATTATAATTTATATAAAAATTATG
* *
107308177 ATAATTATATATTTAAAAATAATTATAATTTATTTTAAAATTATG
1 ATAATTATATATTTAAAAATAATTATAATTTATATAAAAATTATG
107308222 AT
1 AT
107308224 TTAATAAAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
44 31 0.72
45 12 0.28
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (45 bp):
ATAATTATATATTTAAAAATAATTATAATTTATATAAAAATTATG
Found at i:107308200 original size:27 final size:26
Alignment explanation
Indices: 107308152--107308202 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
107308142 TATTTAAAAG
107308152 TAATTATAATTTAATAAAAATTATGA
1 TAATTATAATTTAATAAAAATTATGA
107308178 TAATTATATATTTAA-AAATAATTAT
1 TAATTATA-ATTTAATAAA-AATTAT
107308203 AATTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATTATAATTTAATAAAAATTATGA
Found at i:107318095 original size:108 final size:108
Alignment explanation
Indices: 107317906--107318121 Score: 432
Period size: 108 Copynumber: 2.0 Consensus size: 108
107317896 AGAATATACC
107317906 ATGGTGCTTTCAGAAATATGCTTAGGATTCCCCCACTAAAGATTAAAAAAATGGTTATATGTGTA
1 ATGGTGCTTTCAGAAATATGCTTAGGATTCCCCCACTAAAGATTAAAAAAATGGTTATATGTGTA
107317971 TATATTTTACAACCCAAAAGACTAATCACCACGGTAGCAACAT
66 TATATTTTACAACCCAAAAGACTAATCACCACGGTAGCAACAT
107318014 ATGGTGCTTTCAGAAATATGCTTAGGATTCCCCCACTAAAGATTAAAAAAATGGTTATATGTGTA
1 ATGGTGCTTTCAGAAATATGCTTAGGATTCCCCCACTAAAGATTAAAAAAATGGTTATATGTGTA
107318079 TATATTTTACAACCCAAAAGACTAATCACCACGGTAGCAACAT
66 TATATTTTACAACCCAAAAGACTAATCACCACGGTAGCAACAT
107318122 TGACATATAC
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (108 bp):
ATGGTGCTTTCAGAAATATGCTTAGGATTCCCCCACTAAAGATTAAAAAAATGGTTATATGTGTA
TATATTTTACAACCCAAAAGACTAATCACCACGGTAGCAACAT
Found at i:107323048 original size:29 final size:29
Alignment explanation
Indices: 107323016--107323090 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
107323006 TCATATTCAG
* *
107323016 ATGGCCCATTAGGCCCAAATCACCTGTAT
1 ATGGCCCGTTAGGCCCAAATCACATGTAT
*
107323045 ATGGCCCGTTAGGCCCAAATCACATTTAT
1 ATGGCCCGTTAGGCCCAAATCACATGTAT
107323074 ATGGCCCGTTAGGCCCA
1 ATGGCCCGTTAGGCCCA
107323091 GTCACATTCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (29 bp):
ATGGCCCGTTAGGCCCAAATCACATGTAT
Found at i:107323050 original size:57 final size:58
Alignment explanation
Indices: 107322980--107323090 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
107322970 AATTTCACAT
* *
107322980 ACCTGTATCTGGCCCACTAAGCCC-AATCATATTCAGATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCACTAAGCCCAAATCACATTCAGATGGCCCATTAGGCCCAAATC
** * * * *
107323037 ACCTGTATATGGCCCGTTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCACTAAGCCCAAATCACATTCAGATGGCCCATTAGGCCCA
107323091 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 20 0.44
58 25 0.56
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (58 bp):
ACCTGTATATGGCCCACTAAGCCCAAATCACATTCAGATGGCCCATTAGGCCCAAATC
Found at i:107323335 original size:16 final size:16
Alignment explanation
Indices: 107323314--107323359 Score: 92
Period size: 16 Copynumber: 2.9 Consensus size: 16
107323304 GTAGCCAAAC
107323314 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGTA
107323330 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGTA
107323346 TTTCAGCTTTTCGG
1 TTTCAGCTTTTCGG
107323360 CTTTTTGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGGTA
Found at i:107323374 original size:32 final size:32
Alignment explanation
Indices: 107323314--107323376 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
107323304 GTAGCCAAAC
*
107323314 TTTCAGCTTTTCGGTATTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGTATTTCAGCCTTTCGGTA
**
107323346 TTTCAGCTTTTCGGCT-TTTTGGCCTTTCGGT
1 TTTCAGCTTTTCGG-TATTTCAGCCTTTCGGT
107323377 TTTTACCGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.08, C:0.21, G:0.21, T:0.51
Consensus pattern (32 bp):
TTTCAGCTTTTCGGTATTTCAGCCTTTCGGTA
Found at i:107327506 original size:29 final size:29
Alignment explanation
Indices: 107327425--107327507 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
107327415 TTTGGCCTAC
* * *
107327425 TAAGCCC-AATCATATTCATATGACCCAT
1 TAAGCCCAAATCACATTTATATGGCCCAT
* * * * *
107327453 TAGGCTCAAATCACCTGTATCTGGCCCAT
1 TAAGCCCAAATCACATTTATATGGCCCAT
107327482 TAAGCCCAAATCACATTTATATGGCC
1 TAAGCCCAAATCACATTTATATGGCC
107327508 TGTTAGGCCC
Statistics
Matches: 41, Mismatches: 13, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
TAAGCCCAAATCACATTTATATGGCCCAT
Found at i:107327517 original size:29 final size:29
Alignment explanation
Indices: 107327428--107327531 Score: 86
Period size: 29 Copynumber: 3.7 Consensus size: 29
107327418 GGCCTACTAA
* * *
107327428 GCCC-AATCATATTCATATGACCCATTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* * * * *
107327456 GCTCAAATCACCTGTATCTGGCCCATTAA
1 GCCCAAATCACATTTATATGGCCCATTAG
**
107327485 GCCCAAATCACATTTATATGGCCTGTTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* *
107327514 GCCC-AGTCACATTCATAT
1 GCCCAAATCACATTTATAT
107327532 TTATGCTCAC
Statistics
Matches: 58, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
28 15 0.26
29 43 0.74
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
GCCCAAATCACATTTATATGGCCCATTAG
Found at i:107329334 original size:29 final size:28
Alignment explanation
Indices: 107329279--107329392 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
107329269 GTAAGCATGA
* * *
107329279 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
107329307 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
107329336 ATATACAGGTGATTTGGGCCTAATGAGCT
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
107329365 ATAT-GATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
107329392 A
1 A
107329393 GATACAGGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
27 14 0.19
28 15 0.21
29 43 0.60
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:107335099 original size:46 final size:46
Alignment explanation
Indices: 107335034--107335486 Score: 662
Period size: 46 Copynumber: 9.9 Consensus size: 46
107335024 TTATCTTTGA
* * * * * *
107335034 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*** *
107335080 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ***
107335126 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
107335172 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
107335218 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
107335264 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ***
107335310 CATGTTGCCATGGTATCTTTCAACCAAGGTCTTATTTATTTCATGA-
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-AT
*
107335356 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
107335402 CATGTTGCCATGGTATCTTTCAACCATGGTCTT--ACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
107335446 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
107335487 AATTTCAGAA
Statistics
Matches: 374, Mismatches: 28, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
44 44 0.12
45 5 0.01
46 324 0.87
47 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:107337666 original size:21 final size:20
Alignment explanation
Indices: 107337642--107337693 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
107337632 TTATGCCACA
107337642 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
107337663 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
107337683 TTAGTATTTTA
1 TCAGTATTTTA
107337694 ATTTGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:107337886 original size:31 final size:30
Alignment explanation
Indices: 107337832--107337892 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
107337822 CTAAATAAAT
*
107337832 AATAATAAAAAATAATAAATATCTCATTAA
1 AATAATAAAAAATAATAAATATCTAATTAA
* **
107337862 AATATTAATAAAATAATATTTATCTAATTAA
1 AATAATAA-AAAATAATAAATATCTAATTAA
107337893 TTAATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (30 bp):
AATAATAAAAAATAATAAATATCTAATTAA
Found at i:107352243 original size:18 final size:18
Alignment explanation
Indices: 107352210--107352244 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107352200 TTTATCAGTT
*
107352210 TCATTCAGTAACATTCAA
1 TCATTCAATAACATTCAA
*
107352228 TCATTCAATAATATTCA
1 TCATTCAATAACATTCA
107352245 GTCACGCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.37
Consensus pattern (18 bp):
TCATTCAATAACATTCAA
Found at i:107352301 original size:18 final size:18
Alignment explanation
Indices: 107352280--107352363 Score: 107
Period size: 18 Copynumber: 4.7 Consensus size: 18
107352270 AGTAATGATA
107352280 AATTATTCAGT-GACAGTC
1 AATTATTCAGTAG-CAGTC
107352298 AATTATTCAGTAGCAGTC
1 AATTATTCAGTAGCAGTC
* * *
107352316 AGTTATCCAGTAACAGTC
1 AATTATTCAGTAGCAGTC
*
107352334 AGTTATTCAGTAGCAGTC
1 AATTATTCAGTAGCAGTC
*
107352352 AATCATTCAGTA
1 AATTATTCAGTA
107352364 CCTTTATTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
18 57 0.98
19 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (18 bp):
AATTATTCAGTAGCAGTC
Found at i:107352315 original size:54 final size:54
Alignment explanation
Indices: 107352257--107352363 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
107352247 CACGCTTTAA
* * *
107352257 CAGTCAGTTATTCAGTAA-TGATAAATTATTCAGT-GACAGTCAATTATTCAGTAG
1 CAGTCAGTTATCCAGTAACAG-TAAATTATTCAGTAG-CAGTCAATCATTCAGTAG
* *
107352311 CAGTCAGTTATCCAGTAACAGTCAGTTATTCAGTAGCAGTCAATCATTCAGTA
1 CAGTCAGTTATCCAGTAACAGTAAATTATTCAGTAGCAGTCAATCATTCAGTA
107352364 CCTTTATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (54 bp):
CAGTCAGTTATCCAGTAACAGTAAATTATTCAGTAGCAGTCAATCATTCAGTAG
Found at i:107352351 original size:36 final size:36
Alignment explanation
Indices: 107352254--107352363 Score: 125
Period size: 36 Copynumber: 3.1 Consensus size: 36
107352244 AGTCACGCTT
* *
107352254 TAACAGTCAGTTATTCAGTA--ATGATAAATTATTCAG
1 TAACAGTCAGTTATTCAGTAGCA-G-TCAATTATCCAG
* * *
107352290 TGACAGTCAATTATTCAGTAGCAGTCAGTTATCCAG
1 TAACAGTCAGTTATTCAGTAGCAGTCAATTATCCAG
* *
107352326 TAACAGTCAGTTATTCAGTAGCAGTCAATCATTCAG
1 TAACAGTCAGTTATTCAGTAGCAGTCAATTATCCAG
107352362 TA
1 TA
107352364 CCTTTATTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
36 60 0.97
37 1 0.02
38 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (36 bp):
TAACAGTCAGTTATTCAGTAGCAGTCAATTATCCAG
Found at i:107352594 original size:51 final size:54
Alignment explanation
Indices: 107352488--107352603 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 54
107352478 TAACAGTAAT
** * *
107352488 AGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAACAAATCCGGAAC
1 AGTAACAGTAACAGTAGAAGTACACAGAGTACCTCATCAGAACAAATCCGAAAC
**
107352542 AGTAACAGTAACAGTA-AAGTACA-A-AGTACCT-ATTCAGAATGAATCCGAAAC
1 AGTAACAGTAACAGTAGAAGTACACAGAGTACCTCA-TCAGAACAAATCCGAAAC
107352593 AGTAACAGTAA
1 AGTAACAGTAA
107352604 GGCGACACTT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
50 1 0.02
51 32 0.58
52 1 0.02
53 5 0.09
54 16 0.29
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (54 bp):
AGTAACAGTAACAGTAGAAGTACACAGAGTACCTCATCAGAACAAATCCGAAAC
Found at i:107353693 original size:13 final size:13
Alignment explanation
Indices: 107353675--107353708 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
107353665 TTGCCTATTC
107353675 TGTTTCTTTTCTT
1 TGTTTCTTTTCTT
*
107353688 TGTTTCATTTCTT
1 TGTTTCTTTTCTT
107353701 T-TTTCTTT
1 TGTTTCTTT
107353709 ATTTACTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (13 bp):
TGTTTCTTTTCTT
Found at i:107353726 original size:3 final size:3
Alignment explanation
Indices: 107353718--107353776 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
107353708 TATTTACTAT
107353718 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107353766 ATA ATA A-A ATA
1 ATA ATA ATA ATA
107353777 TCTATATTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 53 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:107354206 original size:14 final size:14
Alignment explanation
Indices: 107354189--107354231 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
107354179 TCTTATAATA
107354189 TAATTATAATAAAT
1 TAATTATAATAAAT
107354203 TAATT-TAATATAAT
1 TAATTATAATA-AAT
*
107354217 TTATTACTAATAAAT
1 TAATTA-TAATAAAT
107354232 ATATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 12 0.48
15 3 0.12
16 5 0.20
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (14 bp):
TAATTATAATAAAT
Found at i:107359116 original size:18 final size:20
Alignment explanation
Indices: 107359085--107359127 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
107359075 GCATACCAAA
107359085 ACAAATATACGTTAA-AAT-
1 ACAAATATACGTTAACAATC
**
107359103 ACAAATATGTGTTAACAATC
1 ACAAATATACGTTAACAATC
107359123 ACAAA
1 ACAAA
107359128 GTTTAGAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 3 0.14
20 5 0.24
ACGTcount: A:0.53, C:0.14, G:0.07, T:0.26
Consensus pattern (20 bp):
ACAAATATACGTTAACAATC
Found at i:107366319 original size:25 final size:25
Alignment explanation
Indices: 107366291--107366342 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
107366281 GGAAATAAAG
107366291 TGACAAAAAGG-GAAATTTTGAGTTA
1 TGAC-AAAAGGCGAAATTTTGAGTTA
107366316 TGACAAAAGGCGAAATTTTGAGTTA
1 TGACAAAAGGCGAAATTTTGAGTTA
107366341 TG
1 TG
107366343 TCAACATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.29
Consensus pattern (25 bp):
TGACAAAAGGCGAAATTTTGAGTTA
Found at i:107368556 original size:45 final size:45
Alignment explanation
Indices: 107368504--107368765 Score: 221
Period size: 46 Copynumber: 5.8 Consensus size: 45
107368494 CCATAGTTGG
* *
107368504 ACTATGGCATCAT-ACCAGGAATGAGTAAGACCATAGCTGAAAGAC
1 ACTATGGCATCATGA-CAGGAATGAGTAAGACCATAGTTGAAAGAT
* * * *
107368549 GCTATGGCATCACGATTCA-G-ACGAGTAAGACCATAGCTGAAAGAT
1 ACTATGGCATCATGA--CAGGAATGAGTAAGACCATAGTTGAAAGAT
* ** *
107368594 GCTATGGCATCGCGATTCA-G-ATGTGTAAGACCATAGTTGAAAGAT
1 ACTATGGCATCATGA--CAGGAATGAGTAAGACCATAGTTGAAAGAT
* * *
107368639 ACTATGGCAAT-ATGACGAGAAATGAATAAGACCATGGTTGAAAGAT
1 ACTATGGC-ATCATGAC-AGGAATGAGTAAGACCATAGTTGAAAGAT
* * * * *
107368685 TCCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAT
1 ACTATGGCATCATGACAGG-AATGAGTAAGACCATAGTTGAAAGAT
* *
107368731 ACCATGGCAACATGACAGGAAATGAGTAAGACCAT
1 ACTATGGCATCATGACAGG-AATGAGTAAGACCAT
107368766 GGTATCTTGA
Statistics
Matches: 187, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 87 0.47
46 96 0.51
47 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (45 bp):
ACTATGGCATCATGACAGGAATGAGTAAGACCATAGTTGAAAGAT
Found at i:107368681 original size:46 final size:46
Alignment explanation
Indices: 107368619--107368768 Score: 239
Period size: 46 Copynumber: 3.3 Consensus size: 46
107368609 TTCAGATGTG
* * *
107368619 TAAGACCATAGTTGAAAGATACTATGGCAATATGAC-GAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAG-GAAATGAA
*
107368665 TAAGACCATGGTTGAAAGATTCCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
107368711 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
107368757 TAAGACCATGGT
1 TAAGACCATGGT
107368769 ATCTTGACAA
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 96 0.99
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:107368767 original size:30 final size:30
Alignment explanation
Indices: 107368731--107368793 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
107368721 GTTGAAAGAT
* *
107368731 ACCATGGCAACATGACAGGAAATGAGTAAG
1 ACCATGGCAACATGACAAGAAATGAATAAG
* * *
107368761 ACCATGGTATCTTGACAAGAAATGAATAAG
1 ACCATGGCAACATGACAAGAAATGAATAAG
107368791 ACC
1 ACC
107368794 GTGGTTGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (30 bp):
ACCATGGCAACATGACAAGAAATGAATAAG
Found at i:107368812 original size:76 final size:76
Alignment explanation
Indices: 107368697--107368841 Score: 254
Period size: 76 Copynumber: 1.9 Consensus size: 76
107368687 CATGGCAACA
* *
107368697 TGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
1 TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
107368762 CCATGGTATCT
66 CCATGGTATCT
* *
107368773 TGACAAGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACATGACAGAAAATGGGTAAGA
1 TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
107368838 CCAT
66 CCAT
107368842 AGTTGAAAGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (76 bp):
TGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
CCATGGTATCT
Found at i:107368830 original size:46 final size:45
Alignment explanation
Indices: 107368780--107368888 Score: 119
Period size: 46 Copynumber: 2.4 Consensus size: 45
107368770 TCTTGACAAG
*
107368780 AAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAATAAGACCGTGGTTGAAAGACACCATGGCAACATGAC-GA
** * * * * *
107368826 AAATGGGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCGA
1 AAATGAATAAGACCGTGGTTGAAAGACACCATGGCAACATGACGA
* *
107368871 AGATAAATAAGACCGTGG
1 AAATGAATAAGACCGTGG
107368889 ATAGGAGACG
Statistics
Matches: 49, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
45 14 0.29
46 35 0.71
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (45 bp):
AAATGAATAAGACCGTGGTTGAAAGACACCATGGCAACATGACGA
Found at i:107372275 original size:26 final size:24
Alignment explanation
Indices: 107372244--107372292 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
107372234 AAATAAAAAT
*
107372244 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
107372270 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
107372293 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:107375600 original size:21 final size:21
Alignment explanation
Indices: 107375576--107375807 Score: 155
Period size: 21 Copynumber: 11.0 Consensus size: 21
107375566 AAGGCTGAAT
* *
107375576 AGAAGCTTATGAGAGCTAAAC
1 AGAAGCTCATAAGAGCTAAAC
* * * *
107375597 AGAAAC-CTATAAGGGTTGAAC
1 AGAAGCTC-ATAAGAGCTAAAC
*
107375618 AGGAGCTCATAAGAGCTAAAC
1 AGAAGCTCATAAGAGCTAAAC
* * *
107375639 GGAAGCTCATATGAGTTGAAAC
1 AGAAGCTCATAAGAGCT-AAAC
* *
107375661 AGAAGCTCATAAGAGTTGAAC
1 AGAAGCTCATAAGAGCTAAAC
* * *
107375682 -GAAAACTCATAAGAGTTGAAC
1 AG-AAGCTCATAAGAGCTAAAC
* * *
107375703 AAAAGCTCAGAAGAGCTGAAC
1 AGAAGCTCATAAGAGCTAAAC
* * *
107375724 AAAAGCTCATAAGAGTTGAAC
1 AGAAGCTCATAAGAGCTAAAC
107375745 AGAAGCTCAATAA-AGCTAAAC
1 AGAAGCTC-ATAAGAGCTAAAC
* * * * *
107375766 GGAAACTCATATGAGTTAAAT
1 AGAAGCTCATAAGAGCTAAAC
* *
107375787 AGAAGCTCGTGAGAGCTAAAC
1 AGAAGCTCATAAGAGCTAAAC
107375808 GGAAAGTAAA
Statistics
Matches: 164, Mismatches: 40, Indels: 14
0.75 0.18 0.06
Matches are distributed among these distances:
20 4 0.02
21 136 0.83
22 24 0.15
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (21 bp):
AGAAGCTCATAAGAGCTAAAC
Found at i:107375809 original size:42 final size:42
Alignment explanation
Indices: 107375571--107375812 Score: 247
Period size: 42 Copynumber: 5.7 Consensus size: 42
107375561 GCCCTAAGGC
* * * * *
107375571 TGAATAGAAGCTTATGAGAGCTAAACAGAAAC-CTATAAGGGT
1 TGAACAGAAGCTCATAAGAGCTAAACGGAAACTC-ATAAGAGT
* * *
107375613 TGAACAGGAGCTCATAAGAGCTAAACGGAAGCTCATATGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGT
* * *
107375655 TGAAACAGAAGCTCATAAGAGTTGAACGAAAACTCATAAGAGT
1 TG-AACAGAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGT
* * * *
107375698 TGAACAAAAGCTCAGAAGAGCTGAAC-AAAAGCTCATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACGGAAA-CTCATAAGAGT
*
107375740 TGAACAGAAGCTCAATAA-AGCTAAACGGAAACTCATATGAGT
1 TGAACAGAAGCTC-ATAAGAGCTAAACGGAAACTCATAAGAGT
* * * *
107375782 TAAATAGAAGCTCGTGAGAGCTAAACGGAAA
1 TGAACAGAAGCTCATAAGAGCTAAACGGAAA
107375813 GTAAACACGA
Statistics
Matches: 168, Mismatches: 26, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
41 6 0.04
42 119 0.71
43 43 0.26
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTAAACGGAAACTCATAAGAGT
Found at i:107377015 original size:40 final size:40
Alignment explanation
Indices: 107376960--107377040 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
107376950 CATTGAGGTT
107376960 AGTTTAATGTATATAAGTGTTCTAATAAATAGTAGCTTTG
1 AGTTTAATGTATATAAGTGTTCTAATAAATAGTAGCTTTG
107377000 AGTTTAATGTATATAAGTGTTCTAATAAATAGTAGCTTTG
1 AGTTTAATGTATATAAGTGTTCTAATAAATAGTAGCTTTG
107377040 A
1 A
107377041 ACATTGGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (40 bp):
AGTTTAATGTATATAAGTGTTCTAATAAATAGTAGCTTTG
Found at i:107378361 original size:19 final size:19
Alignment explanation
Indices: 107378326--107378390 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
107378316 ATTAAATCTA
* *
107378326 AAAT-AAATAATAGAAATT
1 AAATAAAATAAAACAAATT
107378344 AAATAAAAGTAAAA-AAATT
1 AAATAAAA-TAAAACAAATT
107378363 AAATATAAATAAAACAAA-T
1 AAATA-AAATAAAACAAATT
107378382 AAATGAAAA
1 AAAT-AAAA
107378391 CTCTAGCCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 4 0.10
19 26 0.63
20 11 0.27
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.22
Consensus pattern (19 bp):
AAATAAAATAAAACAAATT
Found at i:107379498 original size:16 final size:16
Alignment explanation
Indices: 107379479--107379516 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
107379469 AAAGCTTAAA
107379479 AATATAAAATAATTTT
1 AATATAAAATAATTTT
*
107379495 AATA-GAAATAATTTT
1 AATATAAAATAATTTT
*
107379510 AAAATAA
1 AATATAA
107379517 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 2
0.78 0.13 0.09
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
AATATAAAATAATTTT
Found at i:107379516 original size:11 final size:11
Alignment explanation
Indices: 107379500--107379525 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
107379490 ATTTTAATAG
107379500 AAATAATTTTA
1 AAATAATTTTA
107379511 AAATAATTTTA
1 AAATAATTTTA
107379522 AAAT
1 AAAT
107379526 TTTCTTCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAATAATTTTA
Found at i:107388426 original size:7 final size:7
Alignment explanation
Indices: 107388414--107388449 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
107388404 TCAAACATAG
107388414 TACACAT
1 TACACAT
107388421 TACACAT
1 TACACAT
107388428 TACACAT
1 TACACAT
107388435 TACACAT
1 TACACAT
107388442 TACACAT
1 TACACAT
107388449 T
1 T
107388450 CATTTTGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.31
Consensus pattern (7 bp):
TACACAT
Found at i:107394561 original size:5 final size:5
Alignment explanation
Indices: 107394553--107394609 Score: 62
Period size: 5 Copynumber: 11.2 Consensus size: 5
107394543 TGAAATTTTC
* * *
107394553 TCGAA TCGAG TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGA-A TCGAA T-CGAA TCGAA TCGAA TCGAA TCGAA
107394604 TCGAA T
1 TCGAA T
107394610 ATATTTGTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 2 0.04
5 38 0.83
6 6 0.13
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:107394861 original size:37 final size:39
Alignment explanation
Indices: 107394805--107394879 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 39
107394795 TTCTTGTCAC
*
107394805 TATGTATTTTGTAATTAAAAAATATGTTAAATGTAAAAA
1 TATGTATTTTGTAATTAAAAAATATGTTAAATATAAAAA
* ** *
107394844 TATG-ATTTTTTAA-TAAAAGTTATTTTAAATATAAAA
1 TATGTATTTTGTAATTAAAAAATATGTTAAATATAAAA
107394880 TGTGAAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 19 0.61
38 8 0.26
39 4 0.13
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (39 bp):
TATGTATTTTGTAATTAAAAAATATGTTAAATATAAAAA
Found at i:107395171 original size:17 final size:17
Alignment explanation
Indices: 107395111--107395171 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 17
107395101 TAAAGGGTGA
107395111 GAAGTAAAAGTTTAGGAGG
1 GAAGTAAAAGTTT--GAGG
* *
107395130 AAAATAAAAAGTTTTG-GG
1 GAAGT-AAAAG-TTTGAGG
107395148 GAA-TAAAAGTTTGAGG
1 GAAGTAAAAGTTTGAGG
107395164 GAAGTAAA
1 GAAGTAAA
107395172 TGGGGAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 4 0.11
16 10 0.29
17 5 0.14
18 4 0.11
19 4 0.11
20 5 0.14
21 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (17 bp):
GAAGTAAAAGTTTGAGG
Found at i:107395312 original size:30 final size:30
Alignment explanation
Indices: 107395272--107395358 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
107395262 TGTGATGGGA
*
107395272 AGGGATTAAAAGTTTTAGGGGAAAAATAGG
1 AGGGAGTAAAAGTTTTAGGGGAAAAATAGG
* * *
107395302 AGGGAGTAAAAGTTTTAGGGGGAAAGTGGG
1 AGGGAGTAAAAGTTTTAGGGGAAAAATAGG
* * *
107395332 AGAGAGTAAAAATTTT-GGAGAAAAATA
1 AGGGAGTAAAAGTTTTAGGGGAAAAATA
107395359 AAAAGTTTTG
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 7 0.15
30 40 0.85
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (30 bp):
AGGGAGTAAAAGTTTTAGGGGAAAAATAGG
Found at i:107398083 original size:15 final size:16
Alignment explanation
Indices: 107398063--107398095 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
107398053 TTATCGCATT
*
107398063 ATATTTTTTAA-AAAA
1 ATATTTTTAAATAAAA
107398078 ATATTTTTAAATAAAA
1 ATATTTTTAAATAAAA
107398094 AT
1 AT
107398096 TAATCTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTTTTAAATAAAA
Found at i:107404393 original size:2 final size:2
Alignment explanation
Indices: 107404386--107404425 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
107404376 ATTTTTCAGC
*
107404386 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107404426 TTCTTTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:107405057 original size:3 final size:3
Alignment explanation
Indices: 107405025--107405078 Score: 60
Period size: 3 Copynumber: 18.7 Consensus size: 3
107405015 TGTCTAACAC
* *
107405025 TAT TAT TTT TAT TTT TAT T-T T-T TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107405070 TAT ATAT TA
1 TAT -TAT TA
107405079 GTGTATATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 6 0.14
3 35 0.80
4 3 0.07
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:107405197 original size:141 final size:138
Alignment explanation
Indices: 107405049--107405585 Score: 611
Period size: 146 Copynumber: 3.8 Consensus size: 138
107405039 TTATTTTTTA
107405049 TATTATTATTATTATTATTATTATATATTAGTGTATATTTTTATTATATACGTATATGTATTTAT
1 TATTATTATTATTATTATTATTA-ATATTAGTGTATATTTTTATTATATACGTATA--TA--TAT
* * * *
107405114 ATTTACACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTACATTTGCTTT
61 ATTTACATATAGTATTA-TTTTTAATTACTTTATTTTAATATTATTATTATATTACTTTTGATTT
107405179 TTGTATTTCAATAT
125 TTGTATTTCAATAT
*
107405193 TATTACTATTATTATTATTATTATTAATATTAGTGTATATTCTTATTATATACGTATATATATAT
1 TA-T--TATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATACGTATATATATAT
* * * * *
107405258 TAATATATAATACTATTTTTAATTACTTTATTTTAACATTATTATTATATTTACTTTTTTTGTAT
63 TTACATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATA-TTAC---TTTTG-AT
* * *
107405323 TTCATTATTATTGC--TAG
123 TT--TT-GTATTTCAATAT
* *
107405340 TATTATTATTATTATTATTATTAATATTAGTGTATGTTTTTATTATATAGGTATATATATATTTT
1 TATTATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATACGTATATATATA--TT
* * **
107405405 TACATATAGTATTATTTTTAATTAATTTATTTTAATATTATTATTATATTATGTTTATTTTTTTT
64 TACATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTA-CTTT-TGATTTTT
*
107405470 GTATTTCATTAT
127 GTATTTCAATAT
* *
107405482 TATT-TCTAGTATTATTATTATTAATATTA--GTATATGTTTTATTATATATGTATATATATATT
1 TATTAT-TATTATTATTATTATTAATATTAGTGTATAT-TTTTATTATATACGTATATATATATT
*
107405544 TATATATAGTA-T-TTTTTAATTACTTTATTTTAATATTATTAT
64 TACATATAGTATTATTTTTAATTACTTTATTTTAATATTATTAT
107405586 ATTATATGCC
Statistics
Matches: 341, Mismatches: 33, Indels: 45
0.81 0.08 0.11
Matches are distributed among these distances:
137 29 0.09
138 1 0.00
139 12 0.04
140 10 0.03
141 58 0.17
142 47 0.14
143 6 0.02
144 60 0.18
145 8 0.02
146 79 0.23
147 24 0.07
148 2 0.01
149 5 0.01
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (138 bp):
TATTATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATACGTATATATATATTTA
CATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATATTACTTTTGATTTTTGTAT
TTCAATAT
Found at i:107405205 original size:3 final size:3
Alignment explanation
Indices: 107405190--107405368 Score: 62
Period size: 3 Copynumber: 57.7 Consensus size: 3
107405180 TGTATTTCAA
* * *
107405190 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAA TAT TAGT GTA- TAT TCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT
* * * * * *
107405236 TAT TAT ATACG TAT ATAT ATAT TAA TAT ATAA TAC TAT TTT TAAT TAC
1 TAT TAT -TA-T TAT -TAT -TAT TAT TAT -TAT TAT TAT TAT T-AT TAT
* * * * *
107405284 T-T TAT T-T TAA CAT TAT TAT TA- TATT TACT TTT TTT GTAT T-T CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT -TAT TAT TAT
** * *
107405328 TAT TAT TGC TAG TAT TAT TAT TAT TAT TAT TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
107405369 GTGTATGTTT
Statistics
Matches: 129, Mismatches: 33, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
2 8 0.06
3 97 0.75
4 22 0.17
5 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:107405656 original size:17 final size:18
Alignment explanation
Indices: 107405616--107405658 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
107405606 TATTTATTGT
107405616 TTTATTATTAACTAATTA
1 TTTATTATTAACTAATTA
* *
107405634 -TCATTATTAA-TTATTA
1 TTTATTATTAACTAATTA
107405650 TTTATTATT
1 TTTATTATT
107405659 GTCCTTGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATTATTAACTAATTA
Found at i:107405819 original size:13 final size:13
Alignment explanation
Indices: 107405801--107405830 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
107405791 ATTGTTATTT
107405801 TTTTATTCTAATA
1 TTTTATTCTAATA
*
107405814 TTTTATTTTAATA
1 TTTTATTCTAATA
107405827 TTTT
1 TTTT
107405831 TTTCATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTATTCTAATA
Found at i:107417987 original size:78 final size:77
Alignment explanation
Indices: 107417820--107417987 Score: 237
Period size: 78 Copynumber: 2.2 Consensus size: 77
107417810 CAATTTCTGT
* * *
107417820 TTTTTAATTTCTTCTTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTTAATTTC-TCTTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGAC
*
107417885 ATACGCCGAGGTA
65 ACACGCCGAGGTA
* * *
107417898 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGTC
1 TTTTTAATTTCTCTTTTTC-AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGAC
*
107417963 ACACGCTGAGGTA
65 ACACGCCGAGGTA
*
107417976 TTTTTAGTTTCT
1 TTTTTAATTTCT
107417988 ATCACTCATA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 7 0.09
78 72 0.91
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (77 bp):
TTTTTAATTTCTCTTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGACA
CACGCCGAGGTA
Found at i:107418041 original size:63 final size:63
Alignment explanation
Indices: 107417928--107418050 Score: 174
Period size: 63 Copynumber: 2.0 Consensus size: 63
107417918 AAAAAAATCA
* * * * * *
107417928 ACTCATATTGCGAGAGATGAGTTGAGCCTCGAGTCACACGCTGAGGTATTTTTAGTTTCTATC
1 ACTCATATTACGAGAGATGAGTTGACCCTCGAGCCACACGCCGAGATATTTTTAATTTCTATC
* *
107417991 ACTCATATTACGAGAGGTGAGTTGACCCTCGAGCCACATGCCGAGATATTTTTAATTTCT
1 ACTCATATTACGAGAGATGAGTTGACCCTCGAGCCACACGCCGAGATATTTTTAATTTCT
107418051 GTTTTTCAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (63 bp):
ACTCATATTACGAGAGATGAGTTGACCCTCGAGCCACACGCCGAGATATTTTTAATTTCTATC
Found at i:107418054 original size:141 final size:140
Alignment explanation
Indices: 107417850--107418116 Score: 417
Period size: 141 Copynumber: 1.9 Consensus size: 140
107417840 AAAAAAATTA
* * * * *
107417850 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATACGCCGAGGTATTTTCAATTTCTGTTTT
1 ACTCATATTACGAGAGGTGAGTTGACCCTCGAGACACACGCCGAGATATTTTCAATTTCTGTTTT
*
107417915 TCAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGTCACACGCTGAGGTATTTT
66 TC-AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCGAGTCACACGCTGAGGTATTTT
107417980 TAGTTTCTATC
130 TAGTTTCTATC
* * *
107417991 ACTCATATTACGAGAGGTGAGTTGACCCTCGAGCCACATGCCGAGATATTTTTAATTTCTGTTTT
1 ACTCATATTACGAGAGGTGAGTTGACCCTCGAGACACACGCCGAGATATTTTCAATTTCTGTTTT
* * *
107418056 TCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTAT
66 TCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCGAGTCACACGCTGAGGTAT
107418117 CTTCAATTTA
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
140 55 0.48
141 59 0.52
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (140 bp):
ACTCATATTACGAGAGGTGAGTTGACCCTCGAGACACACGCCGAGATATTTTCAATTTCTGTTTT
TCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCATCGAGTCACACGCTGAGGTATTTTT
AGTTTCTATC
Found at i:107418125 original size:77 final size:77
Alignment explanation
Indices: 107417991--107418160 Score: 196
Period size: 77 Copynumber: 2.2 Consensus size: 77
107417981 AGTTTCTATC
* * * * * * *
107417991 ACTCATATTACGAGAGGTGAGTTGACCCTCGAGCCACATGCCGAGATATTTTTAATTTCTGTTTT
1 ACTCATATTACGAGAGGTGAGTTGACCATCGAGCCACACGCCGAGATATCTTCAATTTATGCTTC
** *
107418056 TCAAGAAAATCA
66 AAAAAAAAATCA
* * * * * *
107418068 ACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACACGCTGAGGTATCTTCAATTTATGCTTC
1 ACTCATATTACGAGAGGTGAGTTGACCATCGAGCCACACGCCGAGATATCTTCAATTTATGCTTC
107418133 AAAAAAAAATCA
66 AAAAAAAAATCA
107418145 ACTCATATTACGAGAG
1 ACTCATATTACGAGAG
107418161 TTGCAGTAGA
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (77 bp):
ACTCATATTACGAGAGGTGAGTTGACCATCGAGCCACACGCCGAGATATCTTCAATTTATGCTTC
AAAAAAAAATCA
Found at i:107419097 original size:2 final size:2
Alignment explanation
Indices: 107419090--107419124 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
107419080 TAAAAATAGC
* *
107419090 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107419125 GATAAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (2 bp):
AT
Found at i:107419125 original size:6 final size:6
Alignment explanation
Indices: 107419085--107419128 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
107419075 CTTCTTAAAA
* * *
107419085 ATAGCAT ATATAT ATATAT ATATAT ATAGAT ATAGAT ATAGAT A
1 ATAG-AT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT A
107419129 AAAATATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 32 0.91
7 3 0.09
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (6 bp):
ATAGAT
Found at i:107419125 original size:12 final size:12
Alignment explanation
Indices: 107419085--107419128 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
107419075 CTTCTTAAAA
107419085 ATAGCATATATAT
1 ATAG-ATATATAT
*
107419098 ATATATATATAT
1 ATAGATATATAT
*
107419110 ATAGATATAGAT
1 ATAGATATATAT
107419122 ATAGATA
1 ATAGATA
107419129 AAAATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (12 bp):
ATAGATATATAT
Found at i:107419749 original size:3 final size:3
Alignment explanation
Indices: 107419718--107419776 Score: 66
Period size: 3 Copynumber: 19.7 Consensus size: 3
107419708 TGTCTAACAC
* * * *
107419718 TAT TAT TTT TAT TTT TAT TTT TA- TAT TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107419765 TAT TAT ATAT TA
1 TAT TAT -TAT TA
107419777 GTGTATATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:107420279 original size:15 final size:14
Alignment explanation
Indices: 107420201--107420302 Score: 53
Period size: 12 Copynumber: 7.8 Consensus size: 14
107420191 TATTTCATTA
*
107420201 TTATTAT-TAT-TA
1 TTATTATATATGTT
*
107420213 TTATTAT-TAT-TA
1 TTATTATATATGTT
*
107420225 TTATTAT-TAT-TA
1 TTATTATATATGTT
*
107420237 TTATTAT-TAT-TA
1 TTATTATATATGTT
*
107420249 TTATTAT-TAT-TA
1 TTATTATATATGTT
107420261 TTATTAGTATATGTT
1 TTATTA-TATATGTT
107420276 TTATTATATATGTAT
1 TTATTATATATGT-T
*
107420291 ATATATATATAT
1 TTAT-TATATAT
107420303 TTATATATAG
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
12 54 0.65
13 1 0.01
14 10 0.12
15 11 0.13
16 7 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (14 bp):
TTATTATATATGTT
Found at i:107420282 original size:3 final size:3
Alignment explanation
Indices: 107419891--107420266 Score: 194
Period size: 3 Copynumber: 123.7 Consensus size: 3
107419881 TGTATTTCAA
*
107419891 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
107419939 TAT TAT TAT TAGT GTA- TAT TAT TAT TAT ATACG TA- TAT ATAT T-T
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TA-T TAT TAT -TAT TAT
* * * * * *
107419983 ATAT ATAA TAC TAT TTT TAAT TAC T-T TAT T-T TAA CAT TAT TAT TA-
1 -TAT -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** *
107420028 TATT TACT T-T T-T TTT GTAT T-T CAT TAT TAT TGC TAG TAT TAT TAT
1 TA-T TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
107420073 TAT TAT TAT TAA TAT TAGT GTAT GT-T T-T TTT TAT ATAGG TAT ATAT
1 TAT TAT TAT TAT TAT TA-T -TAT -TAT TAT TAT TAT -TA-T TAT -TAT
* * * * * *
107420119 ATAT T-T ACAT ATAG TAT TGT TTT TAAT TAC T-T TAT T-T TAA TAT TAT
1 -TAT TAT -TAT -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * *
107420165 TAT TA- TAT TAT GT-T TAT T-T TTT TTT GTAT T-T CAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
107420208 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107420256 TAT TAT TAT TA
1 TAT TAT TAT TA
107420267 GTATATGTTT
Statistics
Matches: 297, Mismatches: 42, Indels: 68
0.73 0.10 0.17
Matches are distributed among these distances:
2 28 0.09
3 222 0.75
4 43 0.14
5 4 0.01
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:107420463 original size:18 final size:16
Alignment explanation
Indices: 107420434--107420467 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
107420424 ATTATATAGG
107420434 TATATATATATTTTTA
1 TATATATATATTTTTA
107420450 TATATAGTATTATTTTTA
1 TATATA-TA-TATTTTTA
107420468 ATTACTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TATATATATATTTTTA
Found at i:107420711 original size:127 final size:137
Alignment explanation
Indices: 107420288--107420871 Score: 749
Period size: 137 Copynumber: 4.2 Consensus size: 137
107420278 ATTATATATG
107420288 TATA-TATATATATATTTATATATAGTATT-TTTTTAATTACTTTATTTTAATATTATTATTATA
1 TATAGTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATA
* * *
107420351 TTATATTTACTTTTTTCGTATTTCATTACTATTGTTAGCATTATTATCATTATTAATATTAGTGT
66 TTATATTTACTTTTTTTGTATTTCATTACTATTGTTAGTATTATTATCATTATTAATATTAGTAT
107420416 ATGTTTTTATTA
131 ATG----T-TTA
*
107420428 TATAGGTATATATATATTTTTATATATAGTATTATTTTTAATTACTTTACTTTAATATTATTATT
1 TATA-GTATATATATA--TTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATT
* * *
107420493 ATATTATGTTTATTTTTTTTGTATTTCATTATTATT-TCTAGTATTATTATTC-TTATTAATATT
63 ATATTATATTTACTTTTTTTGTATTTCATTACTATTGT-TAGTATTATTA-TCATTATTAATATT
107420556 AGTATATGTTTTATTA
126 AGTATATG---T-TTA
107420572 TATATGTATATATATATTTATATATAGTATT-TTTTTAATTACTTTATTTT-A-A-TATTATTAT
1 TATA-GTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTAT
* *
107420633 ATTATGTTTA-TTTTTTTGTATTTCATTATTATT-TCTAGTATTATTATTC-TTATTAATATTAG
65 ATTATATTTACTTTTTTTGTATTTCATTACTATTGT-TAGTATTATTA-TCATTATTAATATTAG
*
107420695 TATGTGTTTTATTA
128 TATATG---T-TTA
107420709 TATATGTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTAT
1 TATA-GTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTAT
*
107420774 ATTATATTTACTTTTTTTGTATTTCATTACTATTGTTAGTATTATTATCATTATTAATATTAGTC
65 ATTATATTTACTTTTTTTGTATTTCATTACTATTGTTAGTATTATTATCATTATTAATATTAGTA
107420839 TATGTTTTA
130 TATG-TTTA
* *
107420848 TTATATGTATATATAAATATATAT
1 -TATA-GTATATATATATTTATAT
107420872 TGTAGAAGCC
Statistics
Matches: 413, Mismatches: 16, Indels: 30
0.90 0.03 0.07
Matches are distributed among these distances:
137 96 0.23
138 38 0.09
139 5 0.01
140 29 0.07
141 38 0.09
142 75 0.18
143 1 0.00
144 39 0.09
145 90 0.22
146 2 0.00
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (137 bp):
TATAGTATATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATTATA
TTATATTTACTTTTTTTGTATTTCATTACTATTGTTAGTATTATTATCATTATTAATATTAGTAT
ATGTTTA
Found at i:107420791 original size:279 final size:284
Alignment explanation
Indices: 107420230--107420871 Score: 957
Period size: 279 Copynumber: 2.3 Consensus size: 284
107420220 TATTATTATT
* * *
107420230 ATTATTATTATTATTATTATTATTATTATTATTATTAGTATATGTTTTATTATATATGTATATAT
1 ATTATTATTATTAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATG----TAT
107420295 ATATATATTTATATATAGTATTTTTTTAATTACTTTATTTTAATATTATTATTATATTATATTTA
62 ATATATATTTATATATAGTATTTTTTTAATTACTTTATTTTAATATTATTATTATATTATATTTA
107420360 CTTTTTTCGTATTTCATTACTATTGTTAGCATTATTATCATTATTAATATTAGTGTATGTTTTTA
127 CTTTTTTCGTATTTCATTACTATTGTTAGCATTATTATCATTATTAATATTAG-GTATGTTTTTA
107420425 TTATATAGGTATATATATATTTTTATATATAGTATTATTTTTAATTACTTTACTTTAATATTATT
191 TTATATAGGTATATATATA-TTTTATATATAGTATTATTTTTAATTACTTTACTTTAATATTATT
* *
107420490 ATTATATTATGTTTATTTTTTTTGTATTTC
255 ATTATATTATATTTACTTTTTTTGTATTTC
107420520 ATTATTATT-TCTAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATA
1 ATTATTATTAT-TAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATA
*
107420584 TATATTTATATATAGTATTTTTTTAATTACTTTATTTT-A-A-TATTATTATATTATGTTTA-TT
65 TATATTTATATATAGTATTTTTTTAATTACTTTATTTTAATATTATTATTATATTATATTTACTT
* * *
107420645 TTTTTGTATTTCATTATTATT-TCTAGTATTATTATTC-TTATTAATATTA-GTATGTGTTTTAT
130 TTTTCGTATTTCATTACTATTGT-TAGCATTATTA-TCATTATTAATATTAGGTATGT-TTTTAT
* *
107420707 TATATATGTATATATATA-TTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTATTAT
192 TATATAGGTATATATATATTTTATATATAGTATTATTTTTAATTACTTTACTTTAATATTATTAT
107420771 TATATTATATTTACTTTTTTTGTATTTC
257 TATATTATATTTACTTTTTTTGTATTTC
* * *
107420799 ATTACTATTGTTAGTATTATTA-TCATTATTAATATTAGTCTATGTTTTA-T-TATATGTATATA
1 ATTATTATTATTAGTATTATTATTC-TTATTAATATTAGTATATGTTTTATTATATATGTATATA
* *
107420861 TAAATATATAT
65 TATATTTATAT
107420872 TGTAGAAGCC
Statistics
Matches: 331, Mismatches: 15, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
277 21 0.06
278 3 0.01
279 113 0.34
280 7 0.02
281 24 0.07
282 43 0.13
283 20 0.06
284 1 0.00
285 1 0.00
286 44 0.13
289 1 0.00
290 53 0.16
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (284 bp):
ATTATTATTATTAGTATTATTATTCTTATTAATATTAGTATATGTTTTATTATATATGTATATAT
ATATTTATATATAGTATTTTTTTAATTACTTTATTTTAATATTATTATTATATTATATTTACTTT
TTTCGTATTTCATTACTATTGTTAGCATTATTATCATTATTAATATTAGGTATGTTTTTATTATA
TAGGTATATATATATTTTATATATAGTATTATTTTTAATTACTTTACTTTAATATTATTATTATA
TTATATTTACTTTTTTTGTATTTC
Found at i:107423661 original size:12 final size:12
Alignment explanation
Indices: 107423641--107423676 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
107423631 AGTCATTTGA
107423641 CATTCATGCATT
1 CATTCATGCATT
*
107423653 CATTTATGCATT
1 CATTCATGCATT
*
107423665 CATTCATTCATT
1 CATTCATGCATT
107423677 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:107430643 original size:73 final size:71
Alignment explanation
Indices: 107430534--107430695 Score: 234
Period size: 73 Copynumber: 2.2 Consensus size: 71
107430524 TAAGCCTTTT
** * *
107430534 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT
1 ATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
107430599 ATTTTTCA
65 A-TTTTCA
*
107430607 ATTTTGTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGT
1 ATTTT-TGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
107430672 ATTTTCA
65 ATTTTCA
* *
107430679 ATTTCTGTTTTCAATTT
1 ATTTTTGTTTTTAATTT
107430696 ACGTTGTTCA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 11 0.14
72 10 0.12
73 53 0.65
74 7 0.09
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (71 bp):
ATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
TTTTCA
Found at i:107430790 original size:139 final size:142
Alignment explanation
Indices: 107430628--107430946 Score: 617
Period size: 139 Copynumber: 2.3 Consensus size: 142
107430618 TTAATTTCAA
107430628 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
107430693 TTTACGTTGTTCAAG-AATCAACTCATATTGCGAGAGGTGGGTTGAACC-TTTAA-TTTCTACTT
66 TTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTCTACTT
107430755 TTTCAAAATCAG
131 TTTCAAAATCAG
107430767 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
107430832 TTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTCTACTT
66 TTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTCTACTT
107430897 TTTCAAAATCAG
131 TTTCAAAATCAG
107430909 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
107430947 GCTAATTTCA
Statistics
Matches: 177, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
139 80 0.45
140 33 0.19
141 5 0.03
142 59 0.33
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (142 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTCTACTT
TTTCAAAATCAG
Found at i:107434066 original size:72 final size:71
Alignment explanation
Indices: 107433945--107434110 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
107433935 GAGTTAAGCC
** ** *
107433945 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
107434009 TGAGGTA
65 TGAGGTA
*
107434016 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
107434081 TGAGGTA
65 TGAGGTA
* *
107434088 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
107434111 ACGTTGTTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:107434238 original size:139 final size:140
Alignment explanation
Indices: 107434043--107434797 Score: 1381
Period size: 140 Copynumber: 5.4 Consensus size: 140
107434033 TTAATTTCAA
107434043 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
107434108 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
107434173 TCAAAATCAG
131 TCAAAATCAG
107434183 CTCATATTGCGAGAGGTGAGTTGAGCCTCA-GTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
107434247 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
107434312 TC-AAATCAG
131 TCAAAATCAG
* * * *
107434321 CTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACGCTCAGGTATTTTCAATTTCTATTTTCAG
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
107434386 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
107434451 TCAAAATCAG
131 TCAAAATCAG
*
107434461 CTTATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
107434526 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
107434591 TCAAAATCAG
131 TCAAAATCAG
*
107434601 CTCATATTGCGAGAGGTGAGTTGAGCTTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
107434666 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
107434731 TCAAAATCAG
131 TCAAAATCAG
107434741 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTT
107434798 TCGTCTTTCA
Statistics
Matches: 595, Mismatches: 15, Indels: 8
0.96 0.02 0.01
Matches are distributed among these distances:
138 36 0.06
139 200 0.34
140 340 0.57
142 19 0.03
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:107434664 original size:13 final size:13
Alignment explanation
Indices: 107434646--107434679 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
107434636 CGCTGAGGTA
*
107434646 TTTTCAATTTCTG
1 TTTTCAATTTATG
107434659 TTTTCAATTTATG
1 TTTTCAATTTATG
107434672 TTGTTCAA
1 TT-TTCAA
107434680 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:107434995 original size:71 final size:72
Alignment explanation
Indices: 107434812--107435023 Score: 390
Period size: 72 Copynumber: 3.0 Consensus size: 72
107434802 CTTTCAAAAA
* * *
107434812 AAAACTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAATACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
107434877 TGTTTTC
66 TGTTTTC
107434884 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
107434949 TGTTTTC
66 TGTTTTC
107434956 -AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
107435020 TGTT
66 TGTT
107435024 CAAATGAGTT
Statistics
Matches: 137, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
71 68 0.50
72 69 0.50
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:107435058 original size:47 final size:48
Alignment explanation
Indices: 107434977--107435070 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 48
107434967 ATATTGCGAG
*
107434977 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
107435025 AAATGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
107435071 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 29 0.64
48 16 0.36
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (48 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTC
Found at i:107435125 original size:72 final size:73
Alignment explanation
Indices: 107435025--107435366 Score: 510
Period size: 72 Copynumber: 4.6 Consensus size: 73
107435015 ATTTCTGTTC
107435025 AAATGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTCTGTTTTC-AAAATTCAACTCAT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACTCAT
107435088 ATTGCGAG
66 ATTGCGAG
* * * *
107435096 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC-AAAAATTCAACTC
*
107435161 ATATTGTGAG
64 ATATTGCGAG
* *
107435171 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATTCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT-TTTC---AAAAATTCAAC
*
107435236 TCATATTGTGAG
62 TCATATTGCGAG
* *
107435248 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTC-AAAATTCAACTCAT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACTCAT
107435312 ATTGCGAG
66 ATTGCGAG
*
107435320 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
107435367 CAAAATGAGT
Statistics
Matches: 251, Mismatches: 13, Indels: 13
0.91 0.05 0.05
Matches are distributed among these distances:
71 15 0.06
72 93 0.37
73 5 0.02
74 1 0.00
75 68 0.27
76 4 0.02
77 65 0.26
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (73 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACTCAT
ATTGCGAG
Found at i:107435272 original size:271 final size:267
Alignment explanation
Indices: 107434812--107435561 Score: 891
Period size: 271 Copynumber: 2.8 Consensus size: 267
107434802 CTTTCAAAAA
* * *
107434812 AAAACTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAATACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGC-AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* * *
107434877 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
65 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTT
*
107434942 CAATTTCTGTTTTC-----AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
130 CAATTTCTGTTTTCAAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGT
* * * **
107435002 TGAGGTAATTTCAATTTC-TGTTCAAATGAGTTGAGCCTCAGA-C-ACG-CTGAGGT-AATTTCA
195 TGAGGTAATTTCAATTTCATGTTCAAA--A-TTCA-ACTCAGATCGA-GAATGAGGTGAACCTCA
** * **
107435062 ATTTC-TGTT-TTC
255 A-GACACGTTGAGC
* * *
107435074 AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGC-AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
107435139 TGTTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAT
65 TG-TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAT
107435204 TTTCAATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGAC
127 TTTCAATTTCTGT-TTTCAAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGAC
* * * *
107435269 ACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
191 ACGTTGAGGTAATTTCAATTTC-ATGTTCAAAATTCAACTCAGA-T-CGAG-AATGAGGTGAACC
*
107435334 TCAAGACACGTTGAGG
252 TCAAGACACGTTGAGC
* * * *
107435350 TAATTTCAATTTC-TGTT-CA-AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAATTCAA-CTCATATTGCAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
107435412 TATTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTT
65 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTT
*
107435477 CAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACAC
130 CAATTTCTG-TTTTC-AAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACAC
** *
107435542 GCCGAGGTATTTTCAATTTC
193 GTTGAGGTAATTTCAATTTC
107435562 CGTTTTTCAA
Statistics
Matches: 422, Mismatches: 43, Indels: 37
0.84 0.09 0.07
Matches are distributed among these distances:
262 60 0.14
263 5 0.01
265 63 0.15
266 4 0.01
269 5 0.01
270 71 0.17
271 130 0.31
272 7 0.02
273 49 0.12
274 7 0.02
275 9 0.02
276 10 0.02
277 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (267 bp):
AAAATTCAACTCATATTGCAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
AATTTCTGTTTTCAAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTT
GAGGTAATTTCAATTTCATGTTCAAAATTCAACTCAGATCGAGAATGAGGTGAACCTCAAGACAC
GTTGAGC
Found at i:107435462 original size:121 final size:121
Alignment explanation
Indices: 107435248--107435487 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
107435238 ATATTGTGAG
*
107435248 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
*
107435313 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
107435369 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
* * *
107435434 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
107435488 TTTCAAAAAA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:107435529 original size:78 final size:78
Alignment explanation
Indices: 107435419--107436359 Score: 419
Period size: 78 Copynumber: 11.5 Consensus size: 78
107435409 TTCTATTTTC
* * * *
107435419 AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
107435484 TGTTTTTCAAAAA
66 TGTTTTTCAAAAA
*
107435497 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
*
107435562 CGTTTTTCAATTTCTGCCTTTCAAA
66 TGTTTTTCAA------------AAA
** * * *
107435587 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
*
107435652 TG-TTGTC---AA
66 TGTTTTTCAAAAA
* * **** *
107435661 AAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCCGAGGTATTTTCAATT
107435726 TCTGTTTTTCAATTTCTGTCTTTCAAAAA
64 TCTGTTTTTCAA------------AA--A
* ** ** * *
107435755 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTA-TTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGC-C-GAGGTATTTTCAAT
*
107435818 TTCTGTCTTTC---AA
63 TTCTGTTTTTCAAAAA
** *
107435831 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGCCGAGGTATTTTCAATT
*
107435896 TCTGTTTTTCAATTTCTGTCTTTCAA
64 TCTGTTTTTCAA-----------AAA
** * *
107435922 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGATCACACACTGAGGTATTTTTTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-CACGC-C-GAGGTA------TT
* *
107435986 ACTTCAATTTATATTTTTC-----
57 --TTCAATTTCTGTTTTTCAAAAA
* ** *
107436005 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGCCGAGGTATTTTCAATT
** ***
107436070 TCCATTTTTCAATTTCTGTTTTC
64 TCTGTTTTTCAA--------AAA
* * **
107436093 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
107436158 TG-TTTTC----A
66 TGTTTTTCAAAAA
** ** * *
107436166 AAAAATCAA-TCTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAATCAACTC-ATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGC-C-GAGGTATTTTCAA
*
107436229 TTTCTGTCTTTC---AA
62 TTTCTGTTTTTCAAAAA
** * *
107436243 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGATCACACACTGAGGTATTTTTTCA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-CACGC-C-GAGGTA--TTTTCA
* *
107436307 ATTTATATTTTTC---AA
61 ATTTCTGTTTTTCAAAAA
* **
107436322 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
107436360 GGGTCACATG
Statistics
Matches: 693, Mismatches: 80, Indels: 179
0.73 0.08 0.19
Matches are distributed among these distances:
72 3 0.00
73 34 0.05
74 39 0.06
75 33 0.05
76 70 0.10
77 70 0.10
78 77 0.11
79 53 0.08
83 42 0.06
84 1 0.00
85 10 0.01
86 23 0.03
87 1 0.00
88 37 0.05
89 9 0.01
90 64 0.09
91 45 0.06
92 7 0.01
93 20 0.03
94 38 0.05
97 2 0.00
99 15 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (78 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTCAATTTC
TGTTTTTCAAAAA
Found at i:107435631 original size:90 final size:91
Alignment explanation
Indices: 107435473--107435651 Score: 270
Period size: 90 Copynumber: 2.0 Consensus size: 91
107435463 TGCTGAGGTA
** *
107435473 TTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
1 TTTTCAATTTCTGCCTTTC-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
107435538 ACACGCCGAGGTATTTTCAATTTCCGT
65 ACACGCCGAGGTAATTTCAATTTCCGT
** *
107435565 TTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
*
107435629 CACGCTGAGGTAATTTCAATTTC
66 CACGCCGAGGTAATTTCAATTTC
107435652 TGTTGTCAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 62 0.78
92 17 0.22
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
CACGCCGAGGTAATTTCAATTTCCGT
Found at i:107435691 original size:74 final size:75
Alignment explanation
Indices: 107435566--107435732 Score: 230
Period size: 74 Copynumber: 2.2 Consensus size: 75
107435556 AATTTCCGTT
*
107435566 TTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCTG--TTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
*
107435630 ACGCTGAGGTAA
64 ACGCCGAGGTAA
* * *
107435642 TTTCAATTTCTGTTGTC-AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTT-TCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAC
*
107435706 ACGCCGAGGTAT
64 ACGCCGAGGTAA
107435718 TTTCAATTTCTGTTT
1 TTTCAATTTCTGTTT
107435733 TTCAATTTCT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
74 41 0.50
75 3 0.04
76 38 0.46
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
GCCGAGGTAA
Found at i:107435736 original size:14 final size:14
Alignment explanation
Indices: 107435717--107435751 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
107435707 CGCCGAGGTA
107435717 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
107435731 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
107435745 CTTTCAA
1 TTTTCAA
107435752 AAAAAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:107435813 original size:94 final size:93
Alignment explanation
Indices: 107435659--107435830 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 93
107435649 TTCTGTTGTC
* * * *
107435659 AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTA-TTTCAA
*
107435724 TTTCTGTTTTTCAATTTCTGTCTTTCAAA
65 TTTCTGTCTTTCAATTTCTGTCTTTCAAA
* * * * *
107435753 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTCAA
107435817 TTTCTGTCTTTCAA
65 TTTCTGTCTTTCAA
107435831 AAAAATCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
93 21 0.31
94 46 0.69
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTCAAT
TTCTGTCTTTCAATTTCTGTCTTTCAAA
Found at i:107435861 original size:76 final size:77
Alignment explanation
Indices: 107435731--107435907 Score: 248
Period size: 76 Copynumber: 2.3 Consensus size: 77
107435721 CAATTTCTGT
* ** *
107435731 TTTTCAATTTCTGTCTTTCAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
* *
107435796 TCACGCGCTGAGCTA
63 TCACACGCCGAGCTA
107435811 -TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
107435875 CACGCCGAGGTA
66 CACGCCGAGCTA
*
107435887 TTTTCAATTTCTGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
107435908 TTTCTGTCTT
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
76 51 0.58
77 19 0.22
79 18 0.20
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGCTA
Found at i:107435878 original size:170 final size:167
Alignment explanation
Indices: 107435464--107436526 Score: 1096
Period size: 170 Copynumber: 6.4 Consensus size: 167
107435454 CTCAAGACAT
* **
107435464 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTG
1 GCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
107435529 AGCCTCA-A-GACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAA
63 AGCCTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTC-AAAAAAA
*
107435592 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
127 TCAACTCATATTGCGAGAGGTGAGTTGAG-CT-TGGCTCACAC
* * * * * *
107435632 GCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGC
1 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
107435696 CTCAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAAAAAT
66 CTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTC---AAAAAAAT
* *
107435761 CGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
128 CAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCTCACAC
* *
107435802 GCTGAGCTA-TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
107435866 CTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATCAA
66 CTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATCAA
* *
107435931 CTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
131 CTCATATTGCGAGAGGTGAGTTGAGCTT-GGCTCACAC
* * * *
107435969 ACTGAGGTATTTTTTTTACTTCAATTTATATTTTTC--AAAATTCAACTCATATTGCGAGAGGTG
1 GCTGAGGTA------TT--TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
**
107436032 AGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGT-TTTC--A
58 AGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAA
* ** **
107436094 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCTT--CAAGACAC
123 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTGGC-TCACAC
*
107436138 GTTGAGGTATTTTCAATTTCTG-TTTTC-AAAAAATCAA-TCTATATTGCGAGAGGTGAGTTGAG
1 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAG
** * * * *
107436200 CCTTGGCTCACGCGCTGA-G------------CT-ATTTTCAATTTCTGTCTTTCAAAAAAATCA
65 CCTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATCA
* *
107436251 ACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
130 ACTCATATTGCGAGAGGTGAGTTGAGCTT-GGCTCACAC
* * * * *
107436290 ACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGA
1 GCTGAGGTA--TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * ** * * *
107436355 GCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTATTTTTTAAATTCTGT-TTTC--AAAAATC
64 GCCTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATC
* **
107436417 AACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
129 AACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCTCACAC
*
107436457 GCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
1 GCTGAGGTATTTTCAATTTCTG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGT
107436522 TGAGC
61 TGAGC
107436527 TTTTTAATTT
Statistics
Matches: 757, Mismatches: 86, Indels: 102
0.80 0.09 0.11
Matches are distributed among these distances:
147 14 0.02
148 5 0.01
150 34 0.04
152 11 0.01
154 11 0.01
155 5 0.01
156 42 0.06
157 3 0.00
160 8 0.01
161 52 0.07
163 2 0.00
164 34 0.04
165 11 0.01
166 47 0.06
167 99 0.13
168 63 0.08
169 42 0.06
170 140 0.18
171 34 0.04
173 4 0.01
174 82 0.11
176 14 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (167 bp):
GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGATCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCTTGGCTCACAC
Found at i:107435906 original size:14 final size:14
Alignment explanation
Indices: 107435887--107435921 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
107435877 CGCCGAGGTA
107435887 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
107435901 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
107435915 CTTTCAA
1 TTTTCAA
107435922 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:107435966 original size:91 final size:89
Alignment explanation
Indices: 107435811--107436163 Score: 445
Period size: 91 Copynumber: 4.0 Consensus size: 89
107435801 CGCTGAGCTA
107435811 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
107435876 ACGCCGAGGTATTTTCAATTTCTGTT
64 ACGCCGAGGTATTTTCAATTTCTGTT
*
107435902 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* * *
107435967 ACACTGAGGTA-TTT---TTT-T-TA
64 ACGCCGAGGTATTTTCAATTTCTGTT
* * * * *
107435987 CTTCAATTTATATTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
1 TTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
**
107436052 GCCGAGGTATTTTCAATTTCCATT
66 GCCGAGGTATTTTCAATTTCTGTT
* ** * *
107436076 TTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCTTCA-A-GACAC
1 TTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
**
107436138 GTTGAGGTATTTTCAATTTCTGTT
66 GCCGAGGTATTTTCAATTTCTGTT
107436162 TT
1 TT
107436164 CAAAAAATCA
Statistics
Matches: 231, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
83 52 0.23
84 3 0.01
85 15 0.06
86 27 0.12
87 7 0.03
88 40 0.17
89 11 0.05
90 3 0.01
91 73 0.32
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (89 bp):
TTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
GCCGAGGTATTTTCAATTTCTGTT
Found at i:107436045 original size:83 final size:83
Alignment explanation
Indices: 107435811--107436700 Score: 444
Period size: 88 Copynumber: 10.7 Consensus size: 83
107435801 CGCTGAGCTA
*
107435811 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTCAATTTCT-TTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
107435876 ACGCCGAGGTATTTTCAATTTCTGTT
63 ACGCCGAGGTATTTT---TTTC--TT
* *
107435902 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTCAATTTCT-TTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* * *
107435967 ACACTGAGGTATTTTTTT-TA
63 ACGCCGAGGTATTTTTTTCTT
* * *
107435987 CTTCAATTTATATTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
1 TTTCAATTTCT-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC
107436052 GCCGAGGTATTTTCAATTTCCATT
65 GCCGAGGTATTTT---TTT-C-TT
* * ** * *
107436076 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCTTCA-A-GACACG
1 TTTCAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
**
107436139 TTGAGGTA---------T
66 CCGAGGTATTTTTTTCTT
** ** * *
107436148 TTTCAATTTCTGTTTTCAAAAAATCAATCT-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTCAATTTCT-TTTTTCAAAAATCAA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
* * **
107436212 CGCTGAGCTA---TTTTCAA
64 CGCCGAGGTATTTTTTTCTT
* *** * *
107436229 TTTC--TGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA
1 TTTCAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
* **
107436291 CTGAGGTA-TTTTTTCAA
66 CCGAGGTATTTTTTTCTT
* *** * * * * *
107436308 TTT--ATAT-TTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG
1 TTTCAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
* * *
107436370 TCGAGGTATTTTCAAAATCTATT
66 CCGAGGTATTTT-----TTTCTT
* * * * ** * **
107436393 TTTTAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG
1 TTTCAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
* * **
107436458 CTGAGCTA---TTTTCAA
66 CCGAGGTATTTTTTTCTT
** * * *
107436473 TTTCTGTTT-TTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATT
1 TTTCAATTTCTTTTTTC--AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGATC
* * * ***
107436536 TC-TG-CGAGAGTTGAGTTGAGTC-T
61 ACACGCCGAG-G-T-ATTTTTTTCTT
*
107436559 TTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA
1 TTTCAATTTCT-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACA
*** **
107436622 TATCGAGGTATTTTCAAAATCTGCT
64 CGCCGAGGTATTTT---TTTCT--T
* ***
107436647 TTTCAAGTT-AAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTCTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
107436701 TGGCTCATGC
Statistics
Matches: 632, Mismatches: 112, Indels: 113
0.74 0.13 0.13
Matches are distributed among these distances:
72 12 0.02
73 33 0.05
74 2 0.00
75 10 0.02
76 2 0.00
77 50 0.08
79 74 0.12
80 10 0.02
81 12 0.02
82 35 0.06
83 63 0.10
84 34 0.05
85 36 0.06
86 18 0.03
87 15 0.02
88 135 0.21
89 14 0.02
91 77 0.12
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (83 bp):
TTTCAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
CCGAGGTATTTTTTTCTT
Found at i:107436265 original size:77 final size:76
Alignment explanation
Indices: 107436075--107436526 Score: 373
Period size: 79 Copynumber: 5.7 Consensus size: 76
107436065 CAATTTCCAT
* ** **
107436075 TTTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAG-CTT--CAAGA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCA
*
107436135 CACGTTGAGGTA
65 CACGCTGAGGTA
107436147 TTTTCAATTTCTGTTTTC-AAAAAATCAA-TCTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* *
107436210 CGCGCTGAGCTA
65 CACGCTGAGGTA
* *
107436222 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
*
107436286 ACACACTGAGGTA
64 ACACGCTGAGGTA
* * * * * *
107436299 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
107436364 CACATG-TCGAGGTA
63 CACACGCT-GAGGTA
* * ** *
107436378 TTTTCAAAATCTATTTTTTAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AAT-T-TCTGTT---TTC-----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** *
107436443 GCCTTGGCTCACGTGCTGAGCTA
54 GCCTTGGCTCACACGCTGAGGTA
107436466 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG-----TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
107436527 TTTTTAATTT
Statistics
Matches: 311, Mismatches: 36, Indels: 56
0.77 0.09 0.14
Matches are distributed among these distances:
72 20 0.06
73 28 0.09
74 3 0.01
75 24 0.08
76 8 0.03
77 50 0.16
78 3 0.01
79 64 0.21
80 7 0.02
81 7 0.02
82 29 0.09
83 3 0.01
84 2 0.01
85 1 0.00
86 6 0.02
88 53 0.17
89 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
ACGCTGAGGTA
Found at i:107436471 original size:88 final size:85
Alignment explanation
Indices: 107436322--107436785 Score: 260
Period size: 88 Copynumber: 5.4 Consensus size: 85
107436312 TATTTTTCAA
* * * * *
107436322 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCT-GAGCTATTTTC--A
107436386 ATCTATTTTTTAAATTCTGTTTTC
63 AT-TATTTTTTAAATTCTGTTTTC
* *
107436410 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAATT
* *
107436475 -TCTGTT---TT-T-TTTTC
66 ATTTTTTAAATTCTGTTTTC
* * * * ** * *
107436489 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG-CTT--TTTA-ATTTCTGCGAGA-GTTG
1 --AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA-TGCTGAGCTATTTTC
* * *
107436549 AGTTGAGTCTTTTAATTTCTGTTTTTC
62 AATT-A-TTTTTTAAATTCTG-TTTTC
* ** * *
107436576 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACAT-ATCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCT-GAGCTATTTTCAA
* * **
107436639 -AATCTGCTTTTCAAGTTAAG-TTTC
64 TTAT-T--TTTT-AAATTCTGTTTTC
***
107436663 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAAT
* *
107436728 T-TCTTTTTTAATGTCTGTTTTT
65 TAT-TTTTTAAAT-TCTGTTTTC
* * * * **
107436750 AGAGAGTCAATTCATATTGCGAAAAATGAGTTGAGC
1 A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
107436786 TCAGGATCAC
Statistics
Matches: 289, Mismatches: 55, Indels: 65
0.71 0.13 0.16
Matches are distributed among these distances:
78 5 0.02
79 13 0.04
80 1 0.00
81 15 0.05
82 28 0.10
84 34 0.12
85 12 0.04
86 12 0.04
87 47 0.16
88 115 0.40
89 7 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAATT
ATTTTTTAAATTCTGTTTTC
Found at i:107436544 original size:30 final size:30
Alignment explanation
Indices: 107436508--107436569 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
107436498 CAACTCATAT
107436508 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
107436538 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
107436568 TG
1 TG
107436570 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:107436636 original size:166 final size:166
Alignment explanation
Indices: 107436393--107436698 Score: 397
Period size: 166 Copynumber: 1.8 Consensus size: 166
107436383 AAAATCTATT
* ** *
107436393 TTTTAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG
1 TTTTAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGCTCACATG
**
107436458 CTGAGCTATTTTCAATTTCTG-TTTT-TT-TTTCAAAAAAATTCAACTCATATTGCGAGAGGTGA
66 CTGAGCTATTTTCAAAATCTGCTTTTATTATTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGA
107436520 GTTGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTC
129 GTTGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTC
* *
107436558 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA
1 TTTTAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT-CAGCTCACA
* *
107436622 T-ATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAG
64 TGCT-GAGCTATTTTCAAAATCTGCTTTT--A-TT-A-TTTCAAAAAATCAACTCATATTGCGAG
107436686 AGGTGAGTTGAGC
123 AGGTGAGTTGAGC
107436699 CTTGGCTCAT
Statistics
Matches: 120, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
165 12 0.10
166 61 0.51
167 5 0.04
171 2 0.02
172 30 0.25
173 6 0.05
174 4 0.03
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.37
Consensus pattern (166 bp):
TTTTAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGCTCACATG
CTGAGCTATTTTCAAAATCTGCTTTTATTATTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTC
Found at i:107436670 original size:254 final size:248
Alignment explanation
Indices: 107436159--107436736 Score: 755
Period size: 254 Copynumber: 2.3 Consensus size: 248
107436149 TTCAATTTCT
107436159 GTTTTCAAAAAATCAA-TCTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTAT
1 GTTTTCAAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTAT
107436223 TTTCAATTTCTG----TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
65 TTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
107436284 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
130 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
* ** * * * **
107436349 AGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTATTTTTTAAATTCT
194 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
* *
107436404 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
107436468 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
107436533 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
* *
107436595 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
*
107436658 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
107436722 TTCAATTTCT-TTTTT
66 TTCAATTTCTGTTTTT
107436737 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 26, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
244 64 0.22
245 8 0.03
248 12 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 10 0.03
254 138 0.47
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
Found at i:107437425 original size:27 final size:26
Alignment explanation
Indices: 107437392--107437454 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
107437382 AGCCCCCCAA
107437392 AAAAAACCTAACCAAAAAAAAAAAAAG
1 AAAAAACCTAACC-AAAAAAAAAAAAG
**
107437419 AAAAAACCTAACCCCAAAAAAAAAAG
1 AAAAAACCTAACCAAAAAAAAAAAAG
107437445 -AAAAACCTAA
1 AAAAAACCTAA
107437455 ACCCCCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 10 0.29
26 11 0.32
27 13 0.38
ACGTcount: A:0.73, C:0.19, G:0.03, T:0.05
Consensus pattern (26 bp):
AAAAAACCTAACCAAAAAAAAAAAAG
Found at i:107437457 original size:26 final size:26
Alignment explanation
Indices: 107437392--107437467 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
107437382 AGCCCCCCAA
**
107437392 AAAAAACCTAACCAAAAAAAAAAAAAG
1 AAAAAACCTAACC-CCAAAAAAAAAAG
107437419 AAAAAACCTAACCCCAAAAAAAAAAG
1 AAAAAACCTAACCCCAAAAAAAAAAG
*
107437445 -AAAAACCTAAACCCCCAAAAAAA
1 AAAAAACCT-AACCCCAAAAAAAA
107437468 CCAAGAAACC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 8 0.18
26 24 0.53
27 13 0.29
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.04
Consensus pattern (26 bp):
AAAAAACCTAACCCCAAAAAAAAAAG
Found at i:107438030 original size:2 final size:2
Alignment explanation
Indices: 107438025--107438055 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
107438015 TAAATACTAT
*
107438025 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107438056 TTAAATACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:107440726 original size:6 final size:6
Alignment explanation
Indices: 107440706--107440745 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
107440696 TTAAGAAGAT
* *
107440706 AAATAA AGATAA AAATGA AAATAA AAATAA TAAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AAA
107440746 GTTTTTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:107446273 original size:33 final size:33
Alignment explanation
Indices: 107446234--107446299 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
107446224 TCTCGAGACT
107446234 AAAAACATCTAACCCTAAGTTGATTAATTGAAA
1 AAAAACATCTAACCCTAAGTTGATTAATTGAAA
107446267 AAAAACATCTAACCCTAAGTTGATTAATTGAAA
1 AAAAACATCTAACCCTAAGTTGATTAATTGAAA
107446300 TCTCTTTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.27
Consensus pattern (33 bp):
AAAAACATCTAACCCTAAGTTGATTAATTGAAA
Found at i:107451715 original size:13 final size:13
Alignment explanation
Indices: 107451697--107451722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107451687 TATACCAATA
107451697 TATATTATCCAGC
1 TATATTATCCAGC
107451710 TATATTATCCAGC
1 TATATTATCCAGC
107451723 ATCAAGTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
TATATTATCCAGC
Found at i:107462325 original size:9 final size:9
Alignment explanation
Indices: 107462308--107462492 Score: 62
Period size: 10 Copynumber: 19.9 Consensus size: 9
107462298 GCCTCTGCTT
*
107462308 TTATTAAAA
1 TTATAAAAA
107462317 TTATAAAAA
1 TTATAAAAA
*
107462326 --ATTAAAA
1 TTATAAAAA
*
107462333 TCTATAAAAT
1 T-TATAAAAA
*
107462343 TTATAAATA
1 TTATAAAAA
**
107462352 TTATTAAATT
1 TTA-TAAAAA
107462362 TTAATAAAAA
1 TT-ATAAAAA
**
107462372 --ATTCAAA
1 TTATAAAAA
107462379 -TATTAAAAA
1 TTA-TAAAAA
107462388 TTATAAAAA
1 TTATAAAAA
107462397 TATATAAAAA
1 T-TATAAAAA
107462407 TCGTA-AAAAA
1 T--TATAAAAA
*
107462417 TAATAAAAGA
1 TTATAAAA-A
* **
107462427 TTGTAAATTT
1 TTATAAA-AA
107462437 TTATAAAAA
1 TTATAAAAA
*
107462446 TAGTAAAAAAA
1 T--TATAAAAA
107462457 TTAT-AAAA
1 TTATAAAAA
*
107462465 -TATATAGAA
1 TTATA-AAAA
107462474 TTATAAAAAA
1 TTAT-AAAAA
107462484 TTTATAAAA
1 -TTATAAAA
107462493 TTTTACAAGT
Statistics
Matches: 130, Mismatches: 26, Indels: 39
0.67 0.13 0.20
Matches are distributed among these distances:
7 14 0.11
8 6 0.05
9 38 0.29
10 56 0.43
11 16 0.12
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:107462331 original size:16 final size:17
Alignment explanation
Indices: 107462310--107462341 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
107462300 CTCTGCTTTT
107462310 ATTAAAAT-TATAAAAA
1 ATTAAAATCTATAAAAA
107462326 ATTAAAATCTATAAAA
1 ATTAAAATCTATAAAA
107462342 TTTATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTAAAATCTATAAAAA
Found at i:107462402 original size:10 final size:10
Alignment explanation
Indices: 107462376--107462492 Score: 70
Period size: 10 Copynumber: 12.2 Consensus size: 10
107462366 TAAAAAATTC
107462376 AAATAT-TAA
1 AAATATATAA
107462385 AAAT-TATAA
1 AAATATATAA
107462394 AAATATATAA
1 AAATATATAA
*
107462404 AAATCGTA-AA
1 AAAT-ATATAA
107462414 AAATA-ATAA
1 AAATATATAA
*
107462423 AAGAT-TGTAA
1 AA-ATATATAA
** *
107462433 ATTTTTATAA
1 AAATATATAA
*
107462443 AAATAGTAAAA
1 AAATA-TATAA
107462454 AAAT-TAT-A
1 AAATATATAA
*
107462462 AAATATATAG
1 AAATATATAA
*
107462472 AATTATA-AA
1 AAATATATAA
*
107462481 AAATTTATAA
1 AAATATATAA
107462491 AA
1 AA
107462493 TTTTACAAGT
Statistics
Matches: 81, Mismatches: 16, Indels: 21
0.69 0.14 0.18
Matches are distributed among these distances:
8 7 0.09
9 27 0.33
10 37 0.46
11 10 0.12
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (10 bp):
AAATATATAA
Found at i:107462406 original size:19 final size:19
Alignment explanation
Indices: 107462313--107462492 Score: 69
Period size: 19 Copynumber: 9.6 Consensus size: 19
107462303 TGCTTTTATT
107462313 AAAATTATAAAAA-AT-T-
1 AAAATTATAAAAATATATA
*
107462329 AAAATCTAT-AAAATTTATA
1 AAAAT-TATAAAAATATATA
* * * *
107462348 AATATTATTAAATTTTAATA
1 AAAATTATAAAAATAT-ATA
**
107462368 AAAA--ATTCAAATAT-TA
1 AAAATTATAAAAATATATA
107462384 AAAATTATAAAAATATATA
1 AAAATTATAAAAATATATA
107462403 AAAATCGTA-AAAAATA-ATA
1 AAAAT--TATAAAAATATATA
* ** *
107462422 AAAGATTGTAAATTTTTATA
1 AAA-ATTATAAAAATATATA
*
107462442 AAAA-TAGTAAAAAAAT-TA
1 AAAATTA-TAAAAATATATA
* *
107462460 TAAAATATATAGAATTATA-A
1 -AAAAT-TATAAAAATATATA
107462480 AAAATTTATAAAA
1 AAAA-TTATAAAA
107462493 TTTTACAAGT
Statistics
Matches: 122, Mismatches: 22, Indels: 37
0.67 0.12 0.20
Matches are distributed among these distances:
16 15 0.12
17 4 0.03
18 23 0.19
19 47 0.39
20 29 0.24
21 4 0.03
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAATTATAAAAATATATA
Found at i:107462798 original size:19 final size:19
Alignment explanation
Indices: 107462774--107462827 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
107462764 TTTTAATAAA
*
107462774 TTTT-AAATTTTTTAAATT
1 TTTTAAAATTTATTAAATT
* *
107462792 TTATTAAAATTTAATAATTT
1 TT-TTAAAATTTATTAAATT
107462812 TTTATAAAATTTATTA
1 TTT-TAAAATTTATTA
107462828 TTTTTTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 2 0.07
19 3 0.10
20 24 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTAAAATTTATTAAATT
Found at i:107462813 original size:20 final size:21
Alignment explanation
Indices: 107462790--107462837 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
107462780 ATTTTTTAAA
107462790 TTTTAT-TAAAATTTAATAAT
1 TTTTATATAAAATTTAATAAT
* *
107462810 TTTT-TATAAAATTTATTATT
1 TTTTATATAAAATTTAATAAT
107462830 TTTTATAT
1 TTTTATAT
107462838 TTTTTTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATATAAAATTTAATAAT
Found at i:107462830 original size:19 final size:20
Alignment explanation
Indices: 107462790--107462836 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
107462780 ATTTTTTAAA
107462790 TTTTATTAAAATTTAATAATT
1 TTTTA-TAAAATTTAATAATT
*
107462811 TTTTATAAAATTT-ATTATT
1 TTTTATAAAATTTAATAATT
107462830 TTTTATA
1 TTTTATA
107462837 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 12 0.48
20 8 0.32
21 5 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTATAAAATTTAATAATT
Found at i:107468412 original size:2 final size:2
Alignment explanation
Indices: 107468405--107468452 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
107468395 TTGCATGGCT
107468405 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107468447 TA TA TA
1 TA TA TA
107468453 CATGCCAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107468877 original size:2 final size:2
Alignment explanation
Indices: 107468870--107468899 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
107468860 ATTTATATTC
107468870 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107468900 TCATAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107469216 original size:43 final size:42
Alignment explanation
Indices: 107469161--107469252 Score: 109
Period size: 43 Copynumber: 2.1 Consensus size: 42
107469151 GTAACATACA
107469161 ATGCCAACGTCCCAGAC-GTGGTCTTACAT-GTA-ATCACATATCG
1 ATGCC-ACGTCCCAGACAG-GGTCTTAC-TCGTACA-CACATATCG
*
107469204 ATGCCACTGTCCCAGACAGGGTCTTACTCGTACACATATATCG
1 ATGCCAC-GTCCCAGACAGGGTCTTACTCGTACACACATATCG
107469247 ATGCCA
1 ATGCCA
107469253 TGGTCTTACT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
42 3 0.07
43 39 0.89
44 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCACGTCCCAGACAGGGTCTTACTCGTACACACATATCG
Found at i:107469409 original size:16 final size:15
Alignment explanation
Indices: 107469386--107469429 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
107469376 CACATTTGGC
*
107469386 TTTCACATATATATA
1 TTTCACATATATACA
107469401 TTATCACAT-TATACA
1 TT-TCACATATATACA
107469416 TTTCATCATATATA
1 TTTCA-CATATATA
107469430 ATTCATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 12 0.48
16 10 0.40
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTCACATATATACA
Found at i:107470165 original size:16 final size:17
Alignment explanation
Indices: 107470132--107470168 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
107470122 TATTATATGT
107470132 TTTATTATATTAACATG
1 TTTATTATATTAACATG
*
107470149 TTTATTAT-TTTACATG
1 TTTATTATATTAACATG
107470165 TTTA
1 TTTA
107470169 ACCTTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTATTATATTAACATG
Found at i:107470421 original size:16 final size:15
Alignment explanation
Indices: 107470400--107470433 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
107470390 ATTCACATAA
107470400 AATAAACACAAAAAAT
1 AATAAACA-AAAAAAT
*
107470416 AATAAATAAAAAAAT
1 AATAAACAAAAAAAT
107470431 AAT
1 AAT
107470434 TTTTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AATAAACAAAAAAAT
Found at i:107470763 original size:23 final size:22
Alignment explanation
Indices: 107470737--107470780 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
107470727 GTGATGAGGT
107470737 TATCTT-ATAAATATGCATGAATC
1 TATCTTGA-AAATATGC-TGAATC
107470760 TATCTTGAAAATATGCTGAAT
1 TATCTTGAAAATATGCTGAAT
107470781 TGGATTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (22 bp):
TATCTTGAAAATATGCTGAATC
Found at i:107472993 original size:6 final size:6
Alignment explanation
Indices: 107472969--107473004 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
107472959 AAATTTAAAA
*
107472969 ATTTATT ATTTTT AATTTT ATTTTT ATTTTT ATTTT
1 ATTT-TT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
107473005 AAAAGAAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:107475608 original size:17 final size:18
Alignment explanation
Indices: 107475576--107475610 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
107475566 GTGTGGTTCA
*
107475576 CCCGTGTGGCCCCACACG
1 CCCGTGCGGCCCCACACG
107475594 CCCGTGCGG-CCCACACG
1 CCCGTGCGGCCCCACACG
107475611 GCCTAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.51, G:0.29, T:0.09
Consensus pattern (18 bp):
CCCGTGCGGCCCCACACG
Found at i:107481672 original size:110 final size:110
Alignment explanation
Indices: 107481479--107481701 Score: 401
Period size: 110 Copynumber: 2.0 Consensus size: 110
107481469 AGTAAGGTTT
* * *
107481479 ACTACCTATAGTAGTTTTATAGTATGTTAACAGTAATTTTAGACAGTTCCAAACAGAATTTCAGT
1 ACTACCTATAGTAGTTTTATAGCATGTTAACAATAATTTCAGACAGTTCCAAACAGAATTTCAGT
*
107481544 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAGAA
66 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAAAA
*
107481589 ACTACCTATAGTAGTTTTATAGCATGTTAACAATAATTTCAGACAGTTCCAAACAGAATTTTAGT
1 ACTACCTATAGTAGTTTTATAGCATGTTAACAATAATTTCAGACAGTTCCAAACAGAATTTCAGT
107481654 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAAAA
66 ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAAAA
107481699 ACT
1 ACT
107481702 TACAAGATCG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (110 bp):
ACTACCTATAGTAGTTTTATAGCATGTTAACAATAATTTCAGACAGTTCCAAACAGAATTTCAGT
ATATTCTAAGCATGCTTTCATATAATTCTAAATAGACTTTCAAAA
Found at i:107482026 original size:20 final size:19
Alignment explanation
Indices: 107482001--107482047 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
107481991 GGAAGCTTTC
107482001 AAAACCAATTTAATTTACGA-
1 AAAACCAATTT-ATTT-CGAG
*
107482021 AAAACCTTATTTATTTCGAG
1 AAAACC-AATTTATTTCGAG
107482041 AAAACCA
1 AAAACCA
107482048 TTCTCTAGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 3 0.13
20 16 0.70
21 4 0.17
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (19 bp):
AAAACCAATTTATTTCGAG
Found at i:107490478 original size:20 final size:20
Alignment explanation
Indices: 107490441--107490478 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
107490431 TGATGGGGAG
*
107490441 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
107490461 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
107490479 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:107492428 original size:38 final size:39
Alignment explanation
Indices: 107492378--107492627 Score: 252
Period size: 46 Copynumber: 5.9 Consensus size: 39
107492368 CTGATATGAA
107492378 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
107492417 -TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTAATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
107492460 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
107492501 -TATGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
107492544 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
107492585 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
107492628 ATGACAGAAA
Statistics
Matches: 181, Mismatches: 9, Indels: 35
0.80 0.04 0.16
Matches are distributed among these distances:
38 69 0.38
41 8 0.04
43 4 0.02
44 1 0.01
46 99 0.55
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:107492484 original size:46 final size:46
Alignment explanation
Indices: 107492417--107492671 Score: 312
Period size: 46 Copynumber: 5.7 Consensus size: 46
107492407 TGGCAACCTG
* * * *
107492417 TGTGTAAGACCACGGCTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
107492463 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---T---A
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
107492503 --TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
107492547 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
107492593 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
107492639 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
107492672 TCATGTCAAA
Statistics
Matches: 186, Mismatches: 14, Indels: 18
0.85 0.06 0.08
Matches are distributed among these distances:
38 36 0.19
40 1 0.01
41 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 145 0.78
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:107492512 original size:84 final size:84
Alignment explanation
Indices: 107492371--107492581 Score: 386
Period size: 84 Copynumber: 2.5 Consensus size: 84
107492361 GTGCTCTCTG
*
107492371 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGCTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTATGTAAGACCACGGCTGA
107492436 AAGATACCATGGCAACCTA
66 AAGATACCATGGCAACCTA
* *
107492455 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTATGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTATGTAAGACCACGGCTGA
*
107492520 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTA
107492539 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
107492582 GTGACATGAA
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 123 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (84 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTATGTAAGACCACGGCTGA
AAGATACCATGGCAACCTA
Found at i:107492606 original size:130 final size:122
Alignment explanation
Indices: 107492381--107492627 Score: 350
Period size: 130 Copynumber: 2.0 Consensus size: 122
107492371 ATATGAAATG
107492381 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGCTGAAAGATACCAT
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGCTGAAAGATACCAT
* * **
107492446 GGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTA
66 GGCAACCTAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGTA
* *
107492503 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---TGTGTAAGACCACGGCTGAAA
* *
107492568 GATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
58 GATACCATGGCAACCTAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
107492628 ATGACAGAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
122 34 0.31
127 2 0.02
130 73 0.67
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (122 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCACGGCTGAAAGATACCAT
GGCAACCTAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGTA
Found at i:107499379 original size:13 final size:13
Alignment explanation
Indices: 107499361--107499388 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
107499351 TCCTTTCTTT
107499361 TTCTTTATAGTTG
1 TTCTTTATAGTTG
107499374 TTCTTTATAGTTG
1 TTCTTTATAGTTG
107499387 TT
1 TT
107499389 TAGTGTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (13 bp):
TTCTTTATAGTTG
Found at i:107500452 original size:94 final size:94
Alignment explanation
Indices: 107500291--107500477 Score: 365
Period size: 94 Copynumber: 2.0 Consensus size: 94
107500281 CTTCAAATTC
107500291 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
107500356 TGTATGTATTTTAACCTATATAAGCTTAA
66 TGTATGTATTTTAACCTATATAAGCTTAA
*
107500385 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGTGCTCTAACCAATATGCATTTCTGGCCT
1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
107500450 TGTATGTATTTTAACCTATATAAGCTTA
66 TGTATGTATTTTAACCTATATAAGCTTA
107500478 CTTTATTTTT
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (94 bp):
CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
TGTATGTATTTTAACCTATATAAGCTTAA
Found at i:107512380 original size:217 final size:217
Alignment explanation
Indices: 107511989--107512424 Score: 739
Period size: 217 Copynumber: 2.0 Consensus size: 217
107511979 TAGTTCCTAA
* *
107511989 AGAAGTTTATAGATATTAGAGATTAGCAAATTTTTTATTGATTTGGACACAACATTCTCTTGCTT
1 AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
107512054 ATGATGAAAACCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
66 ATGATGAAAACCCCTTACGAGCT-----A-TTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
*
107512119 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGGGCAAA
125 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATA-GCCAAA
107512184 ATAAAGTAAAAATATTTCCTTGACATTAG
189 ATAAAGTAAAAATATTTCCTTGACATTAG
* *
107512213 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
1 AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
* *
107512278 ATGATGAAAATCCCTTACGAGCT-TTAACTGCTATCATCCATTTTGTTGAAGTACTTCATCAAAC
66 ATGATGAAAACCCCTTACGAGCTATTAACTGCCATCATCCATTTTGTTGAAGTACTTCATCAAAC
107512342 TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
131 TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
107512407 AAAAATATTTCCTTGACA
196 AAAAATATTTCCTTGACA
107512425 ATCAAACATA
Statistics
Matches: 205, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
216 30 0.15
217 92 0.45
224 83 0.40
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (217 bp):
AGAAGTTTATAGATATTAGAGATTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGCTT
ATGATGAAAACCCCTTACGAGCTATTAACTGCCATCATCCATTTTGTTGAAGTACTTCATCAAAC
TTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAATAAAGT
AAAAATATTTCCTTGACATTAG
Done.