Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 370 of 444
Found at i:107518151 original size:20 final size:20
Alignment explanation
Indices: 107518111--107518152 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
107518101 TTAAATTTGT
* * *
107518111 ATTTTAAAAAAATTTATAAA
1 ATTTAAAAAAAATCTAAAAA
107518131 ATTTAAAAAAAATCTAAAAA
1 ATTTAAAAAAAATCTAAAAA
107518151 AT
1 AT
107518153 ATATAACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTAAAAAAAATCTAAAAA
Found at i:107523003 original size:2 final size:2
Alignment explanation
Indices: 107522996--107523030 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
107522986 CTGTGTTGTT
107522996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107523031 GAGAATGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:107526466 original size:44 final size:42
Alignment explanation
Indices: 107526368--107526452 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
107526358 ATTGTATCAA
*
107526368 TCTCACACACTAAGTGCATATATATAGCAAAAGCTATCTCGT
1 TCTCACACACTAAGTGCATATATATACCAAAAGCTATCTCGT
*
107526410 TCTCACACACTAAGTGCAAATATATATATCCGAAA-CTATCTCG
1 TCTCACACACTAAGTGC--ATATATATA-CCAAAAGCTATCTCG
107526453 ATTTCCTACA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 17 0.45
44 17 0.45
45 4 0.11
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (42 bp):
TCTCACACACTAAGTGCATATATATACCAAAAGCTATCTCGT
Found at i:107544884 original size:25 final size:25
Alignment explanation
Indices: 107544856--107544950 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
107544846 AGCTCGTGAA
*
107544856 AGCATATCGATCTACAGCTCATGTG
1 AGCATATCGATTTACAGCTCATGTG
* * *
107544881 AGCATATCGATTTATAGCTCGTGAG
1 AGCATATCGATTTACAGCTCATGTG
*
107544906 AGCATATCGATTTATAGCTCGA-GTG
1 AGCATATCGATTTACAGCTC-ATGTG
* *
107544931 AGCATACCGATTCACAGCTC
1 AGCATATCGATTTACAGCTC
107544951 GTATAAGCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCATATCGATTTACAGCTCATGTG
Found at i:107544902 original size:50 final size:50
Alignment explanation
Indices: 107544843--107544962 Score: 154
Period size: 50 Copynumber: 2.4 Consensus size: 50
107544833 TGTTTTGACC
*
107544843 CATAGCTCGTGAAAGCATATCGATCTACAGCTC-ATGTGAGCATATCGATT
1 CATAGCTCGTGAAAGCATATCGATCTACAGCTCGA-GTGAGCATACCGATT
* * * *
107544893 TATAGCTCGTGAGAGCATATCGATTTATAGCTCGAGTGAGCATACCGATT
1 CATAGCTCGTGAAAGCATATCGATCTACAGCTCGAGTGAGCATACCGATT
*
107544943 CACAGCTCGT-ATAAGCATAT
1 CATAGCTCGTGA-AAGCATAT
107544963 ATGTACATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.02
50 58 0.97
51 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (50 bp):
CATAGCTCGTGAAAGCATATCGATCTACAGCTCGAGTGAGCATACCGATT
Found at i:107550027 original size:42 final size:43
Alignment explanation
Indices: 107549976--107550081 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 43
107549966 CCTGATCAGT
107549976 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
** * * *
107550018 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
107550062 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
107550082 GATCGATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 37 0.69
44 17 0.31
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:107550028 original size:23 final size:21
Alignment explanation
Indices: 107549976--107550071 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
107549966 CCTGATCAGT
** * *
107549976 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
107549997 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
107550018 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
107550039 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
107550060 AAATACGACACA
1 --ATACGACACA
107550072 TAAAGTGCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 57 0.85
23 10 0.15
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:107550481 original size:15 final size:14
Alignment explanation
Indices: 107550457--107550496 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
107550447 TATATATTAT
107550457 ATAATTCAATCAAA
1 ATAATTCAATCAAA
*
107550471 ATAATTTCAATCAAT
1 ATAA-TTCAATCAAA
107550486 ATAAATTCAAT
1 AT-AATTCAAT
107550497 AAATTCATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.74
16 2 0.09
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTCAATCAAA
Found at i:107550835 original size:5 final size:5
Alignment explanation
Indices: 107550827--107550853 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
107550817 TTTTTAGTTT
107550827 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
107550854 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:107550889 original size:8 final size:8
Alignment explanation
Indices: 107550876--107550904 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
107550866 TATCTTTATT
107550876 ATATAATA
1 ATATAATA
107550884 ATATAATA
1 ATATAATA
107550892 ATATAATA
1 ATATAATA
107550900 ATATA
1 ATATA
107550905 TTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:107555359 original size:40 final size:40
Alignment explanation
Indices: 107555314--107555481 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
107555304 CGGAATATAA
*
107555314 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
107555354 CCGGATAGAATGACTCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107555394 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
107555434 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
107555474 CCGGATAT
1 CCGGATAT
107555482 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 102 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107559742 original size:22 final size:19
Alignment explanation
Indices: 107559714--107559755 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
107559704 TGATAATCTT
107559714 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
107559736 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
107559755 T
1 T
107559756 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:107562718 original size:2 final size:2
Alignment explanation
Indices: 107562711--107562813 Score: 190
Period size: 2 Copynumber: 52.0 Consensus size: 2
107562701 ATACTCCCTA
*
107562711 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
107562753 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
107562794 CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT
107562814 ATCAGCTATT
Statistics
Matches: 98, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
1 1 0.01
2 97 0.99
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:107569223 original size:17 final size:18
Alignment explanation
Indices: 107569198--107569234 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
107569188 ATTTTGATAA
107569198 AATTCTTATAAAA-AATT
1 AATTCTTATAAAATAATT
*
107569215 AATTTTTATAAAATAATT
1 AATTCTTATAAAATAATT
107569233 AA
1 AA
107569235 AATTACACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTCTTATAAAATAATT
Found at i:107569952 original size:15 final size:16
Alignment explanation
Indices: 107569934--107569966 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
107569924 TATATTTTTT
107569934 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
107569949 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
107569966 T
1 T
107569967 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:107570052 original size:22 final size:22
Alignment explanation
Indices: 107570013--107570071 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
107570003 GTTTTAAGAA
*
107570013 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
107570034 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
107570056 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
107570072 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:107570088 original size:26 final size:24
Alignment explanation
Indices: 107570042--107570101 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
107570032 ATTTGTTTTA
*
107570042 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
107570066 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
107570092 TTTTTTATTT
1 ATATTTATTT
107570102 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:107574464 original size:42 final size:42
Alignment explanation
Indices: 107574405--107574488 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
107574395 TTCTAGGTCC
107574405 GTATAGGACTTTCGTCTATCAGAAGCTGCCTTCAGACAATCT
1 GTATAGGACTTTCGTCTATCAGAAGCTGCCTTCAGACAATCT
107574447 GTATAGGACTTTCGTCTATCAGAAGCTGCCTTCAGACAATCT
1 GTATAGGACTTTCGTCTATCAGAAGCTGCCTTCAGACAATCT
107574489 CAAATTAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (42 bp):
GTATAGGACTTTCGTCTATCAGAAGCTGCCTTCAGACAATCT
Found at i:107577208 original size:14 final size:14
Alignment explanation
Indices: 107577191--107577237 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
107577181 TATTCTAAAT
107577191 TAATAAAATAAAAA
1 TAATAAAATAAAAA
107577205 TAATAAAATAATAAA
1 TAATAAAATAA-AAA
*
107577220 -ACT-AAATAAAAA
1 TAATAAAATAAAAA
107577232 TAATAA
1 TAATAA
107577238 TATCTTCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 3 0.11
13 8 0.29
14 14 0.50
15 3 0.11
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (14 bp):
TAATAAAATAAAAA
Found at i:107577209 original size:9 final size:9
Alignment explanation
Indices: 107577197--107577237 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
107577187 AAATTAATAA
107577197 AATAAAAAT
1 AATAAAAAT
107577206 AAT-AAAAT
1 AATAAAAAT
*
107577214 AATAAAACT
1 AATAAAAAT
107577223 AAATAAAAAT
1 -AATAAAAAT
107577233 AATAA
1 AATAA
107577238 TATCTTCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 8 0.29
9 12 0.43
10 8 0.29
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAAAAAT
Found at i:107577216 original size:22 final size:24
Alignment explanation
Indices: 107577186--107577239 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
107577176 TAGCCTATTC
* *
107577186 TAAATTAATAAAA-TAAA-AATAA
1 TAAAATAATAAAACTAAATAAAAA
107577208 TAAAATAATAAAACTAAATAAAAA
1 TAAAATAATAAAACTAAATAAAAA
107577232 TAATAATA
1 TAA-AATA
107577240 TCTTCTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 12 0.44
23 4 0.15
24 7 0.26
25 4 0.15
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
TAAAATAATAAAACTAAATAAAAA
Found at i:107580107 original size:20 final size:20
Alignment explanation
Indices: 107580071--107580112 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
107580061 TTTATACTTC
* *
107580071 AGAAATTTATCAGAAGTTTT
1 AGAAATTTATCAAAAGTCTT
107580091 AGAAATCTT-TCAAAAGTCTT
1 AGAAAT-TTATCAAAAGTCTT
107580111 AG
1 AG
107580113 TTTCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (20 bp):
AGAAATTTATCAAAAGTCTT
Found at i:107584042 original size:35 final size:35
Alignment explanation
Indices: 107583993--107584059 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
107583983 TTTATAGATA
*
107583993 GAATTTACTCTCCCATTGAAAGTAAATAAATTGTT
1 GAATTTACTCTCCCATTGAAAGCAAATAAATTGTT
*
107584028 GAATTTACTTTCCCATTGAAAGCAAATAAATT
1 GAATTTACTCTCCCATTGAAAGCAAATAAATT
107584060 ATTTTTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (35 bp):
GAATTTACTCTCCCATTGAAAGCAAATAAATTGTT
Found at i:107598530 original size:21 final size:21
Alignment explanation
Indices: 107598487--107598530 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
107598477 CAAGAAACTA
* *
107598487 GATTCTAAAGTCTCCAATTTG
1 GATTCAAAAGTCTCCAATGTG
107598508 GATTCAAAAGTCT-CAATGGTG
1 GATTCAAAAGTCTCCAAT-GTG
107598529 GA
1 GA
107598531 AGCTAAGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (21 bp):
GATTCAAAAGTCTCCAATGTG
Found at i:107599517 original size:14 final size:15
Alignment explanation
Indices: 107599498--107599528 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
107599488 ATACAATAGC
107599498 AAAAAAGAAAA-GAA
1 AAAAAAGAAAAGGAA
107599512 AAAAAAGAAAAGGAA
1 AAAAAAGAAAAGGAA
107599527 AA
1 AA
107599529 TAGATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAGGAA
Found at i:107600593 original size:25 final size:23
Alignment explanation
Indices: 107600551--107600603 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
107600541 TTTTGAAGTT
* *
107600551 TTTTTTATCATATTATTTTAACA
1 TTTTTTATAATATTATTTAAACA
*
107600574 TTTTTTATAATATCTCATTTAAATA
1 TTTTTTATAATAT-T-ATTTAAACA
107600599 TTTTT
1 TTTTT
107600604 ATGTATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.48
24 1 0.04
25 12 0.48
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTTATAATATTATTTAAACA
Found at i:107604917 original size:19 final size:19
Alignment explanation
Indices: 107604893--107604939 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
107604883 TGATGCCTCC
*
107604893 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
107604912 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
107604931 TATGCATTA
1 TTTGCATTA
107604940 AAGACCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:107613779 original size:177 final size:177
Alignment explanation
Indices: 107613483--107614357 Score: 1082
Period size: 177 Copynumber: 5.0 Consensus size: 177
107613473 CCTGAAGTAC
* * * * * * *
107613483 TAGTGGAGTAGATCGAAGATGGAGAATCTTATCTCTATGTATTGGCAATGGAGTAGATTTCAGCC
1 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGCC
* ** *
107613548 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTG-GT
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAG-
*
107613612 GTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * * *
107613660 TAGTGGAGAAGATCGAAAGA-GGCGAATCTTATCTCCCTGTATCGGAAATGAAGCAGATTTAAGC
1 TAGTGGAGCAGATCG-AAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGC
* *
107613724 CACTAGCCTTATTTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAG
65 CACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAG
107613789 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * * * * ** *
107613837 T-TTGGAGTATATCGAAGATGGCAAAGCTTATCTCCATGTATCGTTAATGGAGTAAATTTTAGCC
1 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGCC
* * * * * * ** *
107613901 CCAAGCCTTATCTC-CTTGAAGTTGC-AGTGGAGCAGGTTCAAGA-TACATGTCTTATCTTTCTG
66 ACTAGCCTTATCTCTC-TGAGGTAGCAAG-AGAGCAGGTTGAAGATTGTA-GTCTTATCTTCCTG
*
107613963 AGGTAGCAAGGAAGCATACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
128 AGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * ** *
107614013 TTGTGGAGCAGATCGAAGACGGCTAATCTTATCTATATGTATCGGCAATGGAGTAGATTTTAGCC
1 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGCC
* * * * *
107614078 ACTAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGAATGGAA-ATTATAGTTTTATCTTCCTGAG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG-GTTGAAGATTGTAGTCTTATCTTCCTGAG
* * * *
107614142 GTAGCAAGGCAGTAGACTAAAGATTGAAGATTTTATCTCCCTAAGCAG
130 GTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * *
107614190 TTGTGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCGCAAA-GGAGTAGATTTTAGCC
1 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGCC
* * * **
107614254 ACTAGCCTTATCTCTCTGAGATAGCAAGAGAGTAGATTGGCGATTGTAGTCTTATCTTCCTGAGG
66 ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGG
* *
107614319 TAGCAAGGAAGCAGACTGATGATTGTAGATCTTATCTCC
131 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCC
107614358 TTGAGAAAAC
Statistics
Matches: 598, Mismatches: 88, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
175 11 0.02
176 242 0.40
177 332 0.56
178 13 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (177 bp):
TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCATGTATCGGAAATGGAGTAGATTTTAGCC
ACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGG
TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
Found at i:107613803 original size:44 final size:46
Alignment explanation
Indices: 107613731--107613826 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 46
107613721 AGCCACTAGC
** *
107613731 CTTAT-TTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATGGTAG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATGGAAGAT
*
107613775 CTTATCTTC-CTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAGACTGAAGATGGAAGAT
107613820 CTTATCT
1 CTTATCT
107613827 CCCTAAGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
43 1 0.02
44 33 0.73
45 11 0.24
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATGGAAGAT
Found at i:107614308 original size:44 final size:46
Alignment explanation
Indices: 107614260--107614356 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 46
107614250 AGCCACTAGC
* * *
107614260 CTTATCTCT-CTGAGATAGCAA-GAGAGTAGATTGGCGATTGTAG-T
1 CTTATCTCTCCTGAGATAGCAAGGA-AGCAGACTGACGATTGTAGAT
* *
107614304 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGATGATTGTAGAT
1 CTTATCTCTCCTGAGATAGCAAGGAAGCAGACTGACGATTGTAGAT
107614349 CTTATCTC
1 CTTATCTC
107614357 CTTGAGAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 33 0.75
45 10 0.23
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (46 bp):
CTTATCTCTCCTGAGATAGCAAGGAAGCAGACTGACGATTGTAGAT
Found at i:107614308 original size:353 final size:353
Alignment explanation
Indices: 107613485--107614357 Score: 1141
Period size: 353 Copynumber: 2.5 Consensus size: 353
107613475 TGAAGTACTA
* * * *
107613485 GTGGAGTAGATCGAAGATGGAGAATCTTATCTCTATGTATTGGCAATGGAGTAGATTTCAGCCAC
1 GTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTA-TCGCAATGGAGTAGATTTTAGCCAC
* *
107613550 CAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTG-GTGT
65 AAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTGAG-GT
*
107613614 AGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAG
129 AGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAG
* * *
107613679 AGGCGAATCTTATCTCCCTGTATCGGAAATGAAGCAGATTTAAGCCACTAGCCTTATTTCTCTGA
194 AGGCGAATCTTATCTACATGTATCGGAAATGAAGCAGATTTAAGCCACTAGCCTTATCTCTCTGA
* * * *
107613744 GGTAGCAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGA
259 GGTAGCAAGAGAGCAGATGGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAA
107613809 AGATTGAAGATCTTATCTCCCTAAGCAGTT
324 AGATTGAAGATCTTATCTCCCTAAGCAGTT
* * * * * *
107613839 -TGGAGTATATCGAAGATGGCAAAGCTTATCTCCATGTATCGTTAATGGAGTAAATTTTAGCCCC
1 GTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCG-CAATGGAGTAGATTTTAGCCAC
* * *** **
107613903 AAGCCTTATCTC-CTTGA-AGTTGC-AGTGGAGCAGGTTCAAGA-TACATGTCTTATCTTTCTGA
65 AAGCCTTATCTCTC-TGAGA-TAGCAAG-AGAGCAGGTTGGCGATTGTA-GTCTTATCTTTCTGA
* * *
107613964 GGTAGCAAGGAAGCATACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTTGTGGAGCAGATCG-
126 GGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGA
* * * * * *
107614028 AAGACGGCTAATCTTATCTATATGTATCGGCAATGGAGTAGATTTTAGCCACTAGCCTTATCTCT
191 AAGA-GGCGAATCTTATCTACATGTATCGGAAATGAAGCAGATTTAAGCCACTAGCCTTATCTCT
* * * * *
107614093 TTGAGGTAGCAAGAGAGCAGAATGGAA-ATTATAGTTTTATCTTCCTGAGGTAGCAAGGCAGTAG
255 CTGAGGTAGCAAGAGAGCAG-ATGGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
*
107614157 ACTAAAGATTGAAGATTTTATCTCCCTAAGCAGTT
319 ACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTT
* * * * *
107614192 GTGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCGCAAAGGAGTAGATTTTAGCCACT
1 GTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGCAATGGAGTAGATTTTAGCCACA
* * *
107614257 AGCCTTATCTCTCTGAGATAGCAAGAGAGTAGATTGGCGATTGTAGTCTTATCTTCCTGAGGTAG
66 AGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTGAGGTAG
* *
107614322 CAAGGAAGCAGACTGATGATTGTAGATCTTATCTCC
131 CAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCC
107614358 TTGAGAAAAC
Statistics
Matches: 440, Mismatches: 66, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
352 11 0.03
353 383 0.87
354 46 0.10
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (353 bp):
GTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGCAATGGAGTAGATTTTAGCCACA
AGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTTCTGAGGTAG
CAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAAGAG
GCGAATCTTATCTACATGTATCGGAAATGAAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGG
TAGCAAGAGAGCAGATGGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAG
ATTGAAGATCTTATCTCCCTAAGCAGTT
Found at i:107614997 original size:14 final size:14
Alignment explanation
Indices: 107614978--107615009 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
107614968 ATACAATAGC
107614978 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
*
107614992 AAAAAAAGAAAAAG
1 AAAAAAAAAAAAAG
107615006 AAAA
1 AAAA
107615010 TAGATTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:107616386 original size:2 final size:2
Alignment explanation
Indices: 107616379--107616405 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107616369 GCTTCTAAAT
107616379 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107616406 GTTTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107621257 original size:38 final size:38
Alignment explanation
Indices: 107621214--107621290 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
107621204 GTTATTTTAC
*
107621214 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGGCATA
1 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
*
107621252 ATAATTTTTTAAATTGGTAAACTGACTAAGAGGACATA
1 ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
107621290 A
1 A
107621291 AATGAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (38 bp):
ATAATTTTTTAAATTGGTAAACCGACTAAGAGGACATA
Found at i:107622577 original size:25 final size:27
Alignment explanation
Indices: 107622540--107622592 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
107622530 TCAAACATGC
107622540 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
107622566 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
107622592 A
1 A
107622593 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:107624108 original size:26 final size:26
Alignment explanation
Indices: 107624077--107624184 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
107624067 TGAAATTTCC
107624077 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107624103 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
107624129 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
107624155 ATCATGGAACACTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107624181 ATCA
1 ATCA
107624185 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:107627771 original size:31 final size:31
Alignment explanation
Indices: 107627715--107627816 Score: 141
Period size: 31 Copynumber: 3.3 Consensus size: 31
107627705 CTTAATAACC
* *
107627715 TAGTGACTTAAATAAAAAGCTTTTGAATAGTT
1 TAGTGACTTAAATGAGAA-CTTTTGAATAGTT
* *
107627747 CAGTGCCTTAAATGAGAACTTTTGAATAGTT
1 TAGTGACTTAAATGAGAACTTTTGAATAGTT
* *
107627778 TGGTGACTTAAATGCGAACTTTTGAATAGTT
1 TAGTGACTTAAATGAGAACTTTTGAATAGTT
107627809 TAGTGACT
1 TAGTGACT
107627817 ATTTTGTAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
31 47 0.77
32 14 0.23
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (31 bp):
TAGTGACTTAAATGAGAACTTTTGAATAGTT
Found at i:107632670 original size:15 final size:15
Alignment explanation
Indices: 107632646--107632691 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
107632636 ATATAAATAG
*
107632646 AAATAAAAATATAAT
1 AAATAGAAATATAAT
107632661 AAATAGAAATATAAT
1 AAATAGAAATATAAT
107632676 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
107632692 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:107632694 original size:44 final size:44
Alignment explanation
Indices: 107632640--107632726 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
107632630 ATTAGTATAT
107632640 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
107632684 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
107632727 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:107632711 original size:15 final size:14
Alignment explanation
Indices: 107632638--107632754 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
107632628 ATATTAGTAT
*
107632638 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
107632651 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
107632667 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
107632681 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
107632696 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
107632711 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
107632725 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
107632740 ATAAATATAAATAG
1 ATAAATAAAAATAG
107632754 A
1 A
107632755 AACATAGTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 22 0.27
15 35 0.43
16 6 0.07
17 7 0.09
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:107632716 original size:29 final size:28
Alignment explanation
Indices: 107632659--107632754 Score: 74
Period size: 29 Copynumber: 3.3 Consensus size: 28
107632649 TAAAAATATA
* *
107632659 ATAAATAGA-AATATAATAATAGTAGAAAT
1 ATAAATAGATAA-ATAAAAATAG-ATAAAT
107632688 ATAAATAGATAAATAAAAATTAGATAAAT
1 ATAAATAGATAAATAAAAA-TAGATAAAT
*
107632717 A-ATAATAGTATTAGAATAACAA-A-ATAAAT
1 ATA-AATAG-A-TA-AATAAAAATAGATAAAT
107632746 ATAAATAGA
1 ATAAATAGA
107632755 AACATAGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
28 2 0.04
29 38 0.67
30 8 0.14
31 2 0.04
32 7 0.12
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (28 bp):
ATAAATAGATAAATAAAAATAGATAAAT
Found at i:107633300 original size:20 final size:19
Alignment explanation
Indices: 107633255--107633302 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
107633245 GGGTTTACTA
* **
107633255 AAAATAACCTAAATAATTT
1 AAAATAAACTAAATAAAAT
107633274 AATAATAAACTAAAATAAAAT
1 AA-AATAAACT-AAATAAAAT
107633295 AAAATAAA
1 AAAATAAA
107633303 AACAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 13 0.54
21 9 0.38
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (19 bp):
AAAATAAACTAAATAAAAT
Found at i:107634205 original size:263 final size:264
Alignment explanation
Indices: 107633663--107634262 Score: 794
Period size: 263 Copynumber: 2.3 Consensus size: 264
107633653 TTTCATATCA
* * * * ** *
107633663 ATCTACTCCACTACTACTTAGGGAGATATGATTTGTAATCTTC-AGCCTGCT-CCACTGTTGCTC
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCTAGCCTGTTACC-CTACTGCTT
* * * * *
107633726 AGGGAGATAAGGCTCACTGTCTTCGATCTGCTCCAATACTGCTTAGGGAGATAAGATCTGTAATT
64 AGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATT
* * * * * * *
107633791 TCCAGCCTGTTACCCTACTGCTTAAGGGGTCAAGGCTCACTGTCTTTGATTTTCTCCACTATTGC
129 TCCAGCCTGCTACCCTACTGCTTAAGGGGTAAAGGCTCACTGTCTTCGATCTGCTCCACTACTAC
* ** * **
107633856 TTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATGCTATTGCTTAGGAGGTTGGGGCTCACCG
194 TTAGAGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCACCG
*
107633921 TTTTCG
259 TGTTCG
* *
107633927 ATCTACTCCACTACTGCTTAGTGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
* **
107633992 GGGGTTAAGGCTCACCGTCTTTGATCTACTCCTCTACTGCTTAGGGAGATAAGATCTGCAATTTC
66 GGGGTTAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATTTC
* * * *
107634057 CAGCCTGCTACCC-ACTGCTTAGGGGGTAAAGGTTCATTGTCTTCGATCTGCTCCGCTACTACTT
131 CAGCCTGCTACCCTACTGCTTAAGGGGTAAAGGCTCACTGTCTTCGATCTGCTCCACTACTACTT
* *
107634121 A-AGGCGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGT
196 AGA-GAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCACCGT
107634185 GTTCG
260 GTTCG
* *
107634190 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
107634255 GGGGTTAA
66 GGGGTTAA
107634263 AGTTCACCAT
Statistics
Matches: 292, Mismatches: 41, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
262 1 0.00
263 170 0.58
264 119 0.41
265 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (264 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTCACCGTCTTCGATCTACTCCAATACTGCTTAGGGAGATAAGATCTGCAATTTC
CAGCCTGCTACCCTACTGCTTAAGGGGTAAAGGCTCACTGTCTTCGATCTGCTCCACTACTACTT
AGAGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCACCGTG
TTCG
Found at i:107634270 original size:88 final size:88
Alignment explanation
Indices: 107633663--107634262 Score: 729
Period size: 88 Copynumber: 6.8 Consensus size: 88
107633653 TTTCATATCA
* * * * ** *
107633663 ATCTACTCCACTACTACTTAGGGAGATATGATTTGTAATCTT-CAGCCTGCT-CCACTGTTGCTC
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCCAGCCTGTTACC-CTACTGCTT
* * *
107633726 AGGGAGATAAGGCTCACTGTCTTCG
64 AGGGGGTTAAGGCTCACCGTCTTCG
* * *
107633751 ATCTGCTCCAATACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
* * *
107633816 GGGGTCAAGGCTCACTGTCTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * * * ** *
107633839 ATTTTCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATGCTATTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
* ** *
107633904 GAGGTTGGGGCTCACCGTTTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* **
107633927 ATCTACTCCACTACTGCTTAGTGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
*
107633992 GGGGTTAAGGCTCACCGTCTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107634015 ATCTACTCCTCTACTGCTTAGGGAGATAAGATCTGCAATTTCCAGCCTGCTACCC-ACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
* * **
107634079 GGGGTAAAGGTTCATTGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * * *
107634102 ATCTGCTCCGCTACTACTTAAGGCGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
*
107634167 GGGGTTAAGGCTCACCGTGTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107634190 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
107634255 GGGGTTAA
66 GGGGTTAA
107634263 AGTTCACCAT
Statistics
Matches: 436, Mismatches: 73, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
87 77 0.18
88 357 0.82
89 2 0.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (88 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTCACCGTCTTCG
Found at i:107634290 original size:45 final size:45
Alignment explanation
Indices: 107634144--107634306 Score: 133
Period size: 44 Copynumber: 3.7 Consensus size: 45
107634134 CTGTAATTTC
* * *
107634144 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTG-TT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGATCACCATGTTT
* * * *** *
107634188 C-GATCTGCTCTA--CTACTGCTTAGGGAGAT-AAGATCTGTA-ATTT
1 CAG-CCTG-T-TACCCTACTGCTTAGGGGGTTAAAGATCACCATGTTT
*
107634231 CTAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGTTCACCATGTTT
1 C-AGCCTGTTACCCTACTGCTTAGGGGGTTAAAGATCACCATGTTT
*
107634277 CAGCCTGTTACCCTACTTCTTA-GGGGTTAA
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAA
107634307 GGCTCACCGT
Statistics
Matches: 90, Mismatches: 19, Indels: 20
0.70 0.15 0.16
Matches are distributed among these distances:
42 2 0.02
43 9 0.10
44 45 0.50
45 28 0.31
46 6 0.07
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (45 bp):
CAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGATCACCATGTTT
Found at i:107634307 original size:132 final size:132
Alignment explanation
Indices: 107634144--107634403 Score: 427
Period size: 132 Copynumber: 2.0 Consensus size: 132
107634134 CTGTAATTTC
107634144 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGC-TCTACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTC-ACTACTGCT
*
107634208 TAGGGAGATAAGATCTGTAA-TTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGTTCACCA
65 TAGGGAGATAAGATCTGTAACTTT-TAGCCTGTTACCC-ACTGCTTAGGGGGTTAAAGCTCACCA
107634272 TGTTT
128 TGTTT
*
107634277 CAGCCTGTTACCCTACTTCTTA-GGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
* * *
107634341 AGGGAGATAAGATTTGTAACTTTTAGCCTGTTACCCATTGCTTAGGGGGTTAAGGCTCACCAT
66 AGGGAGATAAGATCTGTAACTTTTAGCCTGTTACCCACTGCTTAGGGGGTTAAAGCTCACCAT
107634404 CTTCGATCCA
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
131 24 0.20
132 70 0.58
133 26 0.22
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (132 bp):
CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
AGGGAGATAAGATCTGTAACTTTTAGCCTGTTACCCACTGCTTAGGGGGTTAAAGCTCACCATGT
TT
Found at i:107634336 original size:88 final size:88
Alignment explanation
Indices: 107634274--107636053 Score: 1980
Period size: 88 Copynumber: 20.3 Consensus size: 88
107634264 GTTCACCATG
* *
107634274 TTTCAGCCTGTTACCCTACTTCTTA-GGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107634338 CTTAGGGAGATAAGATTTGTAACT
66 CTTAGGGAGATAAGATCTGTAA-T
* **
107634362 TTT-AGCCTGTTACCC-A-TTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCCACTCCACTACT
1 TTTCAGCCTGTTACCCTACTT-CTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
* *
107634424 GTTTAGGAAGATAAGATCTGTAAT
65 GCTTAGGGAGATAAGATCTGTAAT
* * * *
107634448 CTTCAGCCTGTTTCCCTACTGT-TTAGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCACTACT
1 TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
*
107634512 GCTTAGGGAGATAAGATCTATAA-
65 GCTTAGGGAGATAAGATCTGTAAT
* * * *
107634535 TTTCTAACCTGTTACCCTA-TTGCTTAGGGGGGTTAAGGCTCACCGTGTTCAATCTGCTTCACTA
1 TTTC-AGCCTGTTACCCTACTT-CTTA-GGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTA
* * * *
107634599 CAGTTTAAGGAGATAAGATCTATAAT
63 CTGCTTAGGGAGATAAGATCTGTAAT
* * * * *
107634625 TTCCAGCCTGTTACCTTACTACTTA-GGGGTTAAGGCTCACTGTGTTCGATCTGCTCCACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107634689 CTTTGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * *
107634712 CTTCAGCCTGTTACCCTACTAT-TTAGAGGGTTAAGGCTCACCATCTTCGATCCGTTCCACTACT
1 TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
107634776 GCTTAGGGAGATAAGATCTGTAAT
65 GCTTAGGGAGATAAGATCTGTAAT
* * * *
107634800 TTCCAGCCTGTTACCC-ACTGCTTAGGGGGTTAAGACTCACCGTCTTCGATCTGCTCCACTATTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
107634864 CTTAGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * * * ** *
107634887 TTTTAGCTTGTTACCTTACTGCTTAGGGGGTTAAGGCTCACCATCTTTGATCCACTCCACTGCTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
* * * *
107634952 TTTAAGGAGATAATATCCGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * * * *
107634975 CTTT-AGCTTGTTTCCCTACTGT-TTATGGGGTTATGGCTCACTGTATTCGATCCGCTCCACTAC
1 -TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTAC
* *
107635038 TGGTTAGGGAAATAAGATCTGTAAT
64 TGCTTAGGGAGATAAGATCTGTAAT
* * * *
107635063 TTCCAGCCTGTTACCCTACTAT-TCA-GGGGTTAAGGCTCACCGTGTTCGATCTGGTCCACTACT
1 TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
*
107635126 GCTTAGGGAGATAAGATCTATAAT
65 GCTTAGGGAGATAAGATCTGTAAT
* * * ** *
107635150 TTTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTCACCGTCTGCGATCCACTCTACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107635214 TTTAGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* ** * ** * **
107635237 TTTCATCCTGTTACCCTACTGGTTAGGGGGATAAAACTCACCGTCTTTGATCCACTCCACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107635302 TTTAGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * * *
107635325 CTTCAGCCTGTTTCCCTGCTAT-TTAGGGGGTTTAGGCTCACCGTCTTTGATCTGCTCCACTGCT
1 TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
*
107635389 GCTTAGGGAGATAAGATTTGTAAT
65 GCTTAGGGAGATAAGATCTGTAAT
* * * **
107635413 TTTCATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCAACGTCTTCGATCCACTCCACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107635478 TTTAGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * ** * * *
107635501 CTTCAGCCTATTTTCCTGCTAT-TTAGAGGGTTAAGGCTCACCGTCTTTGATCTGCTCCACTACT
1 TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACT
107635565 GCTTAGGGAGATAAGATCTGTAAT
65 GCTTAGGGAGATAAGATCTGTAAT
* * * * * *
107635589 TTCCAGCCTGTTACCTTACTACTTAGGGGGTTAAGGCTCATCGTGTTCGATCTGTTCCACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
*
107635654 CTTAGGGTGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * * * * **
107635677 TTTGAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGTTCATCGTGTTCGATCTGTTCTGCTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
**
107635742 CTTAGGGAGATAAGAAATGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * * * * * *
107635765 ATTCAGCCTGTTACCCTACTGCTTAAGGGGTTAAAGCTCACCGTGTTCGATATGCTCTACTACTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
107635830 CTTAGGGAGATAAGATCTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
** * * ** * *
107635853 TTTCAGCCTGTTACCCTACAACTTAAGGGGTTAAGGCTTACCGTCTTCGATCCACTTCACTATTG
1 TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
* *
107635918 TTTAGGGAGATAAGATTTGTAAT
66 CTTAGGGAGATAAGATCTGTAAT
* * ** * *
107635941 CTTT-AACCTGTTTCCCTACTGT-TTAGGGGGTTAAGGCTCATTGTCTTTGCTCCT-CTCCACTA
1 -TTTCAGCCTGTTACCCTACT-TCTTAGGGGGTTAAGGCTCACCGTCTTCGAT-CTGCTCCACTA
*
107636003 CTGCTTAAGGAGATAAGATCTGTAAT
63 CTGCTTAGGGAGATAAGATCTGTAAT
* * *
107636029 TTCCAGCCTGTTTCCCTACTGCTTA
1 TTTCAGCCTGTTACCCTACTTCTTA
107636054 AGGAGATAAG
Statistics
Matches: 1430, Mismatches: 232, Indels: 60
0.83 0.13 0.03
Matches are distributed among these distances:
85 2 0.00
86 9 0.01
87 383 0.27
88 953 0.67
89 78 0.05
90 5 0.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (88 bp):
TTTCAGCCTGTTACCCTACTTCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTGTAAT
Found at i:107634338 original size:307 final size:309
Alignment explanation
Indices: 107633970--107634570 Score: 861
Period size: 307 Copynumber: 2.0 Consensus size: 309
107633960 TGTAATTTTT
* *
107633970 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATCTACTCCTCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTGCTTA
* ***
107634035 GGGAGATAAGATCTGCAA-TTTCCAGCCTGCTACCCACTGCTTAGGGGGTAAAGGTTCATTGTCT
66 GGGAGATAAGATCTGCAACTTT-CAGCCTGCTACCCACTGCTTAGGGGGTAAAGGCTCACCATCT
** * *
107634099 TCGATCTGCTCCGCTACTACTTAAGG-CGATAAGATCTGTAAT-TTCCAGCCTGTTACCCTACTG
130 TCGATCCACTCCACTACT-CTTAAGGAAGATAAGATCTGTAATCTT-CAGCCTGTTACCCTACTG
* * * *
107634162 CTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTA
193 CTTAGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTATA
*
107634227 ATTTCTAGCCTGTTACCCTACTGCTTA-GGGGGTTAAAGTTCACCATGTTTC
258 ATTTCTAACCTGTTACCCTACTGCTTAGGGGGGTTAAAGTTCACCATGTTTC
* * * *
107634278 AGCCTGTTACCCTACTTCTTA-GGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTGCTTA
* * * * * *
107634342 GGGAGATAAGATTTGTAACTTTTAGCCTGTTACCCATTGCTTAGGGGGTTAAGGCTCACCATCTT
66 GGGAGATAAGATCTGCAACTTTCAGCCTGCTACCCACTGCTTAGGGGGTAAAGGCTCACCATCTT
* * * *
107634407 CGATCCACTCCACTACTGTTTAGGAAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGTTT
131 CGATCCACTCCACTACTCTTAAGGAAGATAAGATCTGTAATCTTCAGCCTGTTACCCTACTGCTT
*
107634472 AGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTATAATT
196 AGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTATAATT
*
107634537 TCTAACCTGTTACCCTATTGCTTAGGGGGGTTAA
261 TCTAACCTGTTACCCTACTGCTTAGGGGGGTTAA
107634571 GGCTCACCGT
Statistics
Matches: 258, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
306 5 0.02
307 219 0.85
308 34 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (309 bp):
AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTACTCCACTACTGCTTA
GGGAGATAAGATCTGCAACTTTCAGCCTGCTACCCACTGCTTAGGGGGTAAAGGCTCACCATCTT
CGATCCACTCCACTACTCTTAAGGAAGATAAGATCTGTAATCTTCAGCCTGTTACCCTACTGCTT
AGGGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTATAATT
TCTAACCTGTTACCCTACTGCTTAGGGGGGTTAAAGTTCACCATGTTTC
Found at i:107634773 original size:264 final size:264
Alignment explanation
Indices: 107634277--107636049 Score: 2222
Period size: 264 Copynumber: 6.7 Consensus size: 264
107634267 CACCATGTTT
*
107634277 CAGCCTGTTACCCTACTTCTTA-GGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
1 CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
* * * *
107634341 AGGGAGATAAGATTTGTAACTTTTAGCCTGTTACCC-ATTGCTTAGGGGGTTAAGGCTCACCATC
66 AGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
*
107634405 TTCGATCCACTCCACTACTGTTTAGGAAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGT
131 TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGT
* * *
107634470 TTAGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTATAA
196 TTAGAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
107634535 TTTC
261 TTTC
* * * * * * *
107634539 TAACCTGTTACCCTATTGCTTAGGGGGGTTAAGGCTCACCGTGTTCAATCTGCTTCACTACAGTT
1 CAGCCTGTTACCCTACTACTTA-GGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCT
* * ** * * *
107634604 TAAGGAGATAAGATCTATAATTTCCAGCCTGTTACCTTACTACTTA-GGGGTTAAGGCTCACTGT
65 TAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGT
* ** *
107634668 GTTCGATCTGCTCCACTACTGCTTT-GGGAGATAAGATCTGTAATCTTCAGCCTGTTACCCTACT
130 CTTCGATCCACTCCACTACTG-TTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACT
* * *
107634732 ATTTAGAGGGTTAAGGCTCACCATCTTCGATCCGTTCCACTACTGCTTAGGGAGATAAGATCTGT
194 GTTTAGAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGT
107634797 AATTTC
259 AATTTC
* * * * *
107634803 CAGCCTGTTACCC-ACTGCTTAGGGGGTTAAGACTCACCGTCTTCGATCTGCTCCACTATTGCTT
1 CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
* * *
107634867 AGGGAGATAAGATCTGTAATTTTTAGCTTGTTACCTTACTGCTTAGGGGGTTAAGGCTCACCATC
66 AGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * * * * *
107634932 TTTGATCCACTCCACTGCTGTTTAAGGAGATAATATCCGTAATCTTTAGCTTGTTTCCCTACTGT
131 TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGT
* * * * *
107634997 TTATG-GGGTTATGGCTCACTGTATTCGATCCGCTCCACTACTGGTTAGGGAAATAAGATCTGTA
196 TTA-GAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
107635061 ATTTC
260 ATTTC
* *
107635066 CAGCCTGTTACCCTACTA-TTCA-GGGGTTAAGGCTCACCGTGTTCGATCTGGTCCACTACTGCT
1 CAGCCTGTTACCCTACTACTT-AGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCT
*
107635129 TAGGGAGATAAGATCTATAATTTTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTCACCGT
65 TAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGT
* * * * *
107635193 CTGCGATCCACTCTACTACTGTTTAGGGAGATAAGATCTGTAATTTTCATCCTGTTACCCTACTG
130 CTTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTG
* * * ** * * *
107635258 GTTAGGGGGATAAAACTCACCGTCTTTGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTA
195 TTTAGAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
107635323 ATCTT-
260 AT-TTC
* * * * * * * *
107635328 CAGCCTGTTTCCCTGCTATTTAGGGGGTTTAGGCTCACCGTCTTTGATCTGCTCCACTGCTGCTT
1 CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
* * * *
107635393 AGGGAGATAAGATTTGTAATTTTCATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCAACGTC
66 AGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * *
107635458 TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTTTCCTGCTAT
131 TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGT
* *
107635523 TTAGAGGGTTAAGGCTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
196 TTAGAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
107635588 TTTC
261 TTTC
* *
107635592 CAGCCTGTTACCTTACTACTTAGGGGGTTAAGGCTCATCGTGTTCGATCTG-TTCCACTACTGCT
1 CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTT-CACTACTGCT
* * * * *
107635656 TAGGGTGATAAGATCTGTAATTTTGAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGTTCATCGT
65 TAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGT
* *** ** * ** * *
107635721 GTTCGATCTGTTCTGCTACTGCTTAGGGAGATAAGAAATGTAATATTCAGCCTGTTACCCTACTG
130 CTTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTG
* * * ** *
107635786 CTTA-AGGGGTTAAAGCTCACCGTGTTCGATATGCTCTACTACTGCTTAGGGAGATAAGATCTGT
195 TTTAGA-GGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGT
*
107635850 AATTTT
259 AATTTC
* * * * ** * *
107635856 CAGCCTGTTACCCTACAACTTAAGGGGTTAAGGCTTACCGTCTTCGATCCACTTCACTATTGTTT
1 CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
* * * * * **
107635921 AGGGAGATAAGATTTGTAATCTTTAACCTGTTTCCCTACTGTTTAGGGGGTTAAGGCTCATTGTC
66 AGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * * *
107635986 TTTGCTCCTCTCCACTACTGCTTAAGGAGATAAGATCTGTAAT-TTCCAGCCTGTTTCCCTACTG
131 TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTT-CAGCCTGTTTCCCTACTG
107636050 CTTAAGGAGA
Statistics
Matches: 1294, Mismatches: 198, Indels: 36
0.85 0.13 0.02
Matches are distributed among these distances:
261 1 0.00
262 237 0.18
263 316 0.24
264 729 0.56
265 11 0.01
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (264 bp):
CAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTTCACTACTGCTT
AGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
TTCGATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGT
TTAGAGGGTTAAGGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
TTTC
Found at i:107636105 original size:43 final size:44
Alignment explanation
Indices: 107636000--107636106 Score: 162
Period size: 44 Copynumber: 2.5 Consensus size: 44
107635990 CTCCTCTCCA
*
107636000 CTACTGCTTAAGGAGATAAGATCTGTAATTTCCAGCCTGTTTCC
1 CTACTGCTTAAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
*
107636044 CTACTGCTTAAGGAGATAAGATCTGTAATTTTCAACCTG-TTCC
1 CTACTGCTTAAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
* * *
107636087 CTATTGCTTAGGGGGATAAG
1 CTACTGCTTAAGGAGATAAG
107636107 GCTAGTGAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
43 21 0.36
44 37 0.64
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAAGGAGATAAGATCTGTAATTTCCAACCTGTTTCC
Found at i:107636282 original size:64 final size:64
Alignment explanation
Indices: 107636181--107636305 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 64
107636171 TGTATCTATG
*
107636181 CTTATGCCAAATAATTAGGATACTATGCTGAAAATGAATCAAATGCTCCAAACTAGATGTGATT
1 CTTATGCCAAATAATTAGGATACTATGATGAAAATGAATCAAATGCTCCAAACTAGATGTGATT
* * * **
107636245 CTTATGTCAAATAATTAGGATGCTATGATCG-AAATGAATCTAATGCTCCTTACTAGATGTG
1 CTTATGCCAAATAATTAGGATACTATGAT-GAAAATGAATCAAATGCTCCAAACTAGATGTG
107636306 TTATGAATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 53 0.98
65 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (64 bp):
CTTATGCCAAATAATTAGGATACTATGATGAAAATGAATCAAATGCTCCAAACTAGATGTGATT
Found at i:107642839 original size:21 final size:23
Alignment explanation
Indices: 107642792--107642845 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
107642782 CATTCAAGAT
**
107642792 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
107642815 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
107642836 AAAAT-ATATA
1 AAAATAATATA
107642846 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:107643073 original size:15 final size:15
Alignment explanation
Indices: 107643049--107643121 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 15
107643039 ATATAAATAG
107643049 AAATAAAAATATAAT
1 AAATAAAAATATAAT
*
107643064 AAATAGAAATATAAT
1 AAATAAAAATATAAT
107643079 AATAGTATAAATATAAATAGAT
1 AA-A-TA-AAA-AT--ATA-AT
107643101 AAATAAAAAT-TAGAT
1 AAATAAAAATATA-AT
107643116 AAATAA
1 AAATAA
107643122 TAGTAGTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
15 27 0.55
16 1 0.02
17 2 0.04
18 4 0.08
19 5 0.10
20 2 0.04
21 4 0.08
22 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
AAATAAAAATATAAT
Found at i:107643089 original size:44 final size:43
Alignment explanation
Indices: 107643016--107643167 Score: 120
Period size: 44 Copynumber: 3.5 Consensus size: 43
107643006 TATAAGGAAA
*
107643016 ATAAT-AAT-GAAAATAATATTAGCATATAAATAGAAATAAAAAT
1 ATAATAAATAGAAAATAATAATAG--TATAAATAGAAATAAAAAT
*
107643059 ATAATAAATAGAAATATAATAATAGTATAAATATAAATAGATAAAT
1 ATAATAAATAGAAA-ATAATAATAGTATAAATAGAAATA-A-AAAT
* * * *
107643105 A-AA-AATTAGATAAATAATAGTAGTATTAGAATAGCAA-AATAA-
1 ATAATAAATAGA-AAATAATAATAGTA-TA-AATAGAAATAAAAAT
107643147 AT-ATAAATAGAAACATAATAA
1 ATAATAAATAGAAA-ATAATAA
107643168 CAATAGCAAT
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
42 4 0.04
43 19 0.21
44 34 0.38
45 12 0.13
46 20 0.22
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (43 bp):
ATAATAAATAGAAAATAATAATAGTATAAATAGAAATAAAAAT
Found at i:107643094 original size:14 final size:14
Alignment explanation
Indices: 107643062--107643120 Score: 59
Period size: 14 Copynumber: 4.1 Consensus size: 14
107643052 TAAAAATATA
107643062 ATAAATAG--AAAT
1 ATAAATAGATAAAT
107643074 ATAATAATAGTATAAAT
1 AT-A-AATAG-ATAAAT
107643091 ATAAATAGATAAAT
1 ATAAATAGATAAAT
*
107643105 AAAAATTAGATAAAT
1 ATAAA-TAGATAAAT
107643120 A
1 A
107643121 ATAGTAGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
12 2 0.05
13 1 0.03
14 15 0.38
15 15 0.38
16 1 0.03
17 6 0.15
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
ATAAATAGATAAAT
Found at i:107643095 original size:29 final size:29
Alignment explanation
Indices: 107643062--107643120 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
107643052 TAAAAATATA
*
107643062 ATAAATAGA-AATATAATAA-TAGTATAAAT
1 ATAAATAGATAA-ATAAAAATTAG-ATAAAT
107643091 ATAAATAGATAAATAAAAATTAGATAAAT
1 ATAAATAGATAAATAAAAATTAGATAAAT
107643120 A
1 A
107643121 ATAGTAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (29 bp):
ATAAATAGATAAATAAAAATTAGATAAAT
Found at i:107643105 original size:23 final size:20
Alignment explanation
Indices: 107643039--107643097 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 20
107643029 TAATATTAGC
107643039 ATATAAATAGAAATAAAAAT
1 ATATAAATAGAAATAAAAAT
107643059 ATAATAAATAGAAATATAATAAT
1 AT-ATAAATAGAAATA-AA-AAT
*
107643082 AGTATAAATATAAATA
1 A-TATAAATAGAAATA
107643098 GATAAATAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 2 0.06
23 16 0.47
24 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
ATATAAATAGAAATAAAAAT
Found at i:107643688 original size:5 final size:5
Alignment explanation
Indices: 107643680--107643711 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
107643670 ATAATTTAAT
107643680 AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AA
107643712 ACAAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:107644196 original size:88 final size:88
Alignment explanation
Indices: 107644070--107646505 Score: 2933
Period size: 88 Copynumber: 27.7 Consensus size: 88
107644060 TTTCATATCA
* * * * * * * ** *
107644070 ATCTACTCCATTACTACTTAGGGAGATATGATTTGTAATCTTCAGCCTGCT-CCACTGTTGCTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACC-CTACTGCTTA
* * *
107644134 GGGAGATAAGGCTCACTGTCTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
* * *
107644158 ATCTGCTCCAATACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* * *
107644223 GGGGTCAAGGCTCACTGTCTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * **
107644246 ATTTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTATGCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* **
107644311 GAGGTTGGGGCTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* *
107644334 ATCTGCTCCACTACTACTTAGTGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
107644399 GGGGTTAAGGCTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* *
107644422 ATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAA-TTTCTATCCTGTTACCCTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-AGCCTGTTACCCTACTGCTTA
* *
107644486 AGGGGTTAAGGCTCACCGTCTTTG
65 GGGGGTTAAGGCTCACCGTCTTCG
*
107644510 ATCTGCTCCACTACTGCTTAAGGCA-ATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
*
107644574 GGGGGTTAAGGCTCACCGTGTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
** * *
107644598 ATCTGCTTTACTACTGCTTAGAGAGATAAGATCTGTAA-TTTCTAGCATGTTACCCTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-AGCCTGTTACCCTACTGCTTA
* *
107644662 GGGGGTTAAGGCTCACCGTGTTCA
65 GGGGGTTAAGGCTCACCGTCTTCG
* * *
107644686 ATCTGCTCCGCTACTGCTTAGGGATATAAGATCTGTAACTTTT-AGCCTGTTACCCTATTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTTCAGCCTGTTACCCTACTGCTTA
* * *
107644750 GGGGGATAGGGCTCACCGTCTTCA
65 GGGGGTTAAGGCTCACCGTCTTCG
* * * * *
107644774 AT-TCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGTTTA
1 ATCT-GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* *
107644838 GGGGGTTAAGGCTCACTGTCTTTG
65 GGGGGTTAAGGCTCACCGTCTTCG
* * * * * *
107644862 ATCCGCTCCACTACTGCTTATGGAAATAAGATCTGTAA-TTTCTAGCCTATTACCCTATTACTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-AGCCTGTTACCCTACTGCTTA
** *
107644926 AAGGGTTAAGGCTCACCGTGTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
* * * * * *
107644950 ATCTGCACCACTA-TAGCTTAAGGAGATAAGATCTGTAATTTCCAGCCTGCTACCCTTCTACTTA
1 ATCTGCTCCACTACT-GCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* *
107645014 -GGGGTTAAGGCTCACCATGTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
* * * *
107645037 ATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGTAGTTTTCAACCTGTTACCCTACTGCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* * *
107645102 GGGGTTAAGGCTTACTGTGTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* *
107645125 ATCTCCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTT-C
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* *
107645189 GGGGTTAAGGCTCACTGTGTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* *
107645212 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
*
107645277 GGGGTTAAGTCTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
** * * * * * *
107645300 ATCCACTCCACTACTGTTTAGGGAGATAAGATCTATAATCTTCAGCCTGTTTCTCTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
*
107645365 GGGGTTAAGGCTCACCATCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107645388 ATCCGCTCCCCTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* *
107645453 GAGGTTAAGACTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107645476 ATCTGCCCCACTACTGCTTAGGGAGATAAAATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA-
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* *
107645540 GGGTTTAAGGCTCACCATCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * * *
107645563 ATCTGCTCCACTACTG-TTGAGGGAGATAAGATTTGTAATCTTCAGCCTGTTTCCCTACT-ATTT
1 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* * *
107645626 GTGGGGTTATGGCTCACTGTGTTCG
65 G-GGGGTTAAGGCTCACCGTCTTCG
** * * * * *
107645651 ATCCACTCCACTACTGGTTAGGGAAATAAGATCTATAATTTCCAGCCTGTTACCCTACTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* *
107645716 GGGGTTAAGGCTCACCGTGTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107645739 ATCTGGTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACTTGTTACCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
*
107645804 GGGGTTATGGCTCACCGTCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
*** * * ** *
107645827 ATCCAATCTACTACTGTTTAGGGAGATAAGATCTGTAATTTTCATTCTGTTTCCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* *
107645892 AGGGTTAAGGCTCACCATCTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
** * * * * * ** * *
107645915 ATCCACTCCACTACAGTTTAGGGAGATATGATCTGTAATCTTCAGCCTATTTTCCTACTGTTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* * *
107645980 GGGGTTAAGGCTCACCATTTTTG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * *
107646003 ATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGTAATTTCCATCCTGTTACCCTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* * *
107646068 GGGGTTAAGGTTCATCGTGTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * *
107646091 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCTAGCCAGTTACCTTACTGCTTC
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-AGCCTGTTACCCTACTGCTTA
* * *
107646155 GAGGGTTAAGGCTCATCGTGTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
* ** ** *
107646179 GTCTATTCCACTACTGCTTAGGGAGATAAGAAATGTAATTTTTAGCCTGTTACCCTACTGCTTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGC-TTA
*
107646244 -GGGGTTAAGGCTCACCGTGTTCG
65 GGGGGTTAAGGCTCACCGTCTTCG
*
107646267 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACCCTACTGCTTA-
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
* * *
107646331 GGAGTTAAGGCCCACCGTCTTCA
66 GGGGTTAAGGCTCACCGTCTTCG
** * * ** ** * * * *
107646354 ATCCACTTCACTATTTATTAGAAAGATAAGATCTGTAATCTTCAACCTGTTTCCCTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
*
107646419 GGGGTTAAGGCTCACCGTTTTCG
66 GGGGTTAAGGCTCACCGTCTTCG
* * * * *
107646442 ATTTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATTTTCAGCCTGTTTCTCTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
107646506 AGGAGATAAG
Statistics
Matches: 2012, Mismatches: 310, Indels: 52
0.85 0.13 0.02
Matches are distributed among these distances:
86 4 0.00
87 319 0.16
88 1664 0.83
89 22 0.01
90 3 0.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (88 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTCACCGTCTTCG
Found at i:107644700 original size:44 final size:43
Alignment explanation
Indices: 107644386--107644708 Score: 153
Period size: 44 Copynumber: 7.3 Consensus size: 43
107644376 CAGCCTGTTA
*
107644386 CCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCT
1 CCCTACTGCTTAGGGGGTTAAGGCTCACCGTTTTCGATCTGCT
* * * * * *
107644429 CCTCTACTGCTTAGGGAGATAA-GAT--CTGTAATTTCTATCCTGTT
1 CC-CTACTGCTTAGGGGGTTAAGGCTCACCGT--TTTCGAT-CTGCT
*
107644473 ACCCTACTGCTTAAGGGGTTAAGGCTCACCGTCTTT-GATCTGCT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGT-TTTCGATCTGCT
* *** * * * * *
107644517 CCACTACTGCTTAAGGCAATAAGATCTGTA--ATTTTC-AGCCTGTT
1 CC-CTACTGCTTAGGGGGTTAAG-GCT-CACCGTTTTCGA-TCTGCT
*
107644561 ACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCGATCTGCTT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTTTTCGATCTGC-T
** * * * * * * * *
107644606 TACTACTGCTTAGAGAGATAA-GAT--CTGTAATTTCTAGCATGTT
1 CCCTACTGCTTAGGGGGTTAAGGCTCACCGT--TTTCGATC-TGCT
* *
107644649 ACCCTACTGCTTAGGGGGTTAAGGCTCACCGTGTTCAATCTGCT
1 -CCCTACTGCTTAGGGGGTTAAGGCTCACCGTTTTCGATCTGCT
107644693 CCGCTACTGCTTAGGG
1 CC-CTACTGCTTAGGG
107644709 ATATAAGATC
Statistics
Matches: 199, Mismatches: 55, Indels: 51
0.65 0.18 0.17
Matches are distributed among these distances:
41 6 0.03
42 1 0.01
43 27 0.14
44 136 0.68
45 19 0.10
46 4 0.02
47 6 0.03
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAGGCTCACCGTTTTCGATCTGCT
Found at i:107653179 original size:44 final size:44
Alignment explanation
Indices: 107653131--107653220 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
107653121 AAATACAAAG
107653131 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
107653175 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
1 TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
107653219 TA
1 TA
107653221 CATAAAAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.23
Consensus pattern (44 bp):
TAAGAAAATCTAAAATAAAGTATAAAACAATTCTAAGCAAATGA
Found at i:107653587 original size:23 final size:21
Alignment explanation
Indices: 107653548--107653602 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 21
107653538 ATTAGTATAT
107653548 AAATAGAAATAAAAATA-TAAG
1 AAATAGAAATAAAAATAGT-AG
107653569 AAATAGAAATATAATAATAGTAG
1 AAATAGAAATA-AA-AATAGTAG
*
107653592 AAATATAAATA
1 AAATAGAAATA
107653603 GATAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 11 0.37
22 2 0.07
23 16 0.53
24 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (21 bp):
AAATAGAAATAAAAATAGTAG
Found at i:107653594 original size:17 final size:15
Alignment explanation
Indices: 107653552--107653599 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
107653542 GTATATAAAT
*
107653552 AGAAATAAAAATATA
1 AGAAATAGAAATATA
107653567 AGAAATAGAAATATA
1 AGAAATAGAAATATA
*
107653582 ATAATAGTAGAAATATA
1 AGAA-A-TAGAAATATA
107653599 A
1 A
107653600 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (15 bp):
AGAAATAGAAATATA
Found at i:107653619 original size:15 final size:14
Alignment explanation
Indices: 107653546--107653626 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
107653536 ATATTAGTAT
*
107653546 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
107653559 AAAATATAAGAAATAG
1 ATAA-ATAA-AAATAG
*
107653575 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
107653589 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
107653604 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
107653619 ATAAATAA
1 ATAAATAA
107653627 TAGTAGTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.05
14 17 0.31
15 32 0.58
16 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.25
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:107654754 original size:29 final size:30
Alignment explanation
Indices: 107654721--107654777 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
107654711 TAATTTAATA
107654721 TGCAATTGTATACAT-GAACTTTGATTTTG
1 TGCAATTGTATACATGGAACTTTGATTTTG
* * *
107654750 TGCAATTTTGTACATGGAATTTTGATTT
1 TGCAATTGTATACATGGAACTTTGATTT
107654778 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (30 bp):
TGCAATTGTATACATGGAACTTTGATTTTG
Found at i:107654778 original size:29 final size:30
Alignment explanation
Indices: 107654720--107654792 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
107654710 ATAATTTAAT
* *
107654720 ATGCAATTGTATACATGAACTTTGATTTTG
1 ATGCAATTTTGTACATGAACTTTGATTTTG
*
107654750 -TGCAATTTTGTACATGGAATTTTGA-TTTG
1 ATGCAATTTTGTACAT-GAACTTTGATTTTG
*
107654779 ATCCAATTCTTGTA
1 ATGCAATT-TTGTA
107654793 AGTTATTAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 17 0.47
30 14 0.39
31 5 0.14
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.45
Consensus pattern (30 bp):
ATGCAATTTTGTACATGAACTTTGATTTTG
Found at i:107654786 original size:30 final size:30
Alignment explanation
Indices: 107654731--107654792 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
107654721 TGCAATTGTA
*
107654731 TACATGAACTTTGATTTTGTGCAATT-TTG
1 TACATGAACTTTGATTTTGTCCAATTCTTG
*
107654760 TACATGGAATTTTGA-TTTGATCCAATTCTTG
1 TACAT-GAACTTTGATTTTG-TCCAATTCTTG
107654791 TA
1 TA
107654793 AGTTATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 9 0.32
30 14 0.50
31 5 0.18
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (30 bp):
TACATGAACTTTGATTTTGTCCAATTCTTG
Found at i:107655221 original size:19 final size:18
Alignment explanation
Indices: 107655161--107655229 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
107655151 GCCACCCTAT
*
107655161 TTTTATTTTTATTTAT-T
1 TTTTATTTTTATTTATAA
* *
107655178 TATTTATTATTT-GTTATAT
1 T-TTTATT-TTTATTTATAA
107655197 TATTTATTTTTATTTACTAA
1 T-TTTATTTTTATTTA-TAA
107655217 TTTTA-TTTTATTT
1 TTTTATTTTTATTT
107655230 TATTTAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 1 0.02
18 21 0.48
19 19 0.43
20 3 0.07
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.74
Consensus pattern (18 bp):
TTTTATTTTTATTTATAA
Found at i:107655222 original size:23 final size:23
Alignment explanation
Indices: 107655172--107655235 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
107655162 TTTATTTTTA
* *
107655172 TTTATTTATTTATTATTT-GTTAT
1 TTTATTTATTT-TTATTTACTAAT
*
107655195 ATTATTTATTTTTATTTACTAAT
1 TTTATTTATTTTTATTTACTAAT
107655218 TTTATTT-TATTTTATTTA
1 TTTATTTAT-TTTTATTTA
107655236 ATTATTCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
22 7 0.20
23 28 0.80
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTATTTATTTTTATTTACTAAT
Found at i:107655241 original size:37 final size:37
Alignment explanation
Indices: 107655163--107655246 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
107655153 CACCCTATTT
* * *
107655163 TTATTTTTATTTATTTATTTATTATTTGTTATATTAT
1 TTATTTTTATTTACTAATTTATTATTTGTTATATTAA
*
107655200 TTATTTTTATTTACTAATTTTATT-TTATTTTAT-TTAA
1 TTATTTTTATTTACTAA-TTTATTATT-TGTTATATTAA
*
107655237 TTATTCTTAT
1 TTATTTTTAT
107655247 ACTTAAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 29 0.73
38 11 0.28
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (37 bp):
TTATTTTTATTTACTAATTTATTATTTGTTATATTAA
Found at i:107655357 original size:3 final size:3
Alignment explanation
Indices: 107655349--107655392 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
107655339 TATCATTGAG
107655349 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
107655393 GTTTATTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:107659096 original size:46 final size:47
Alignment explanation
Indices: 107659000--107659100 Score: 152
Period size: 46 Copynumber: 2.2 Consensus size: 47
107658990 CCGGGATAAG
* *
107659000 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
*
107659047 CACA-AGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
107659093 CACATAGT
1 CACATAGT
107659101 GTCTCATCGA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 40 0.82
47 9 0.18
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:107666345 original size:47 final size:47
Alignment explanation
Indices: 107666236--107666346 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
107666226 CCGGGATAAG
* *
107666236 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
107666283 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
107666330 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
107666347 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:107667118 original size:4 final size:4
Alignment explanation
Indices: 107667109--107667141 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
107667099 CCCTTTTCTA
107667109 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
107667142 CACGTTTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:107668531 original size:41 final size:41
Alignment explanation
Indices: 107668476--107668558 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
107668466 ATGAGTGAAG
107668476 AATAATTTTGGTGAAATATGTTTCGTTCTGTCACCTTTGAT
1 AATAATTTTGGTGAAATATGTTTCGTTCTGTCACCTTTGAT
107668517 AATAATTTTGGTGAAATATGTTTCGTTCTGTCACCTTTGAT
1 AATAATTTTGGTGAAATATGTTTCGTTCTGTCACCTTTGAT
107668558 A
1 A
107668559 TAACCACCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (41 bp):
AATAATTTTGGTGAAATATGTTTCGTTCTGTCACCTTTGAT
Found at i:107673518 original size:36 final size:37
Alignment explanation
Indices: 107673474--107673553 Score: 160
Period size: 37 Copynumber: 2.2 Consensus size: 37
107673464 TACAAAAACA
107673474 ATTTTTTTTGGTCTATGATAAACCGTAATTTATACAT
1 ATTTTTTTTGGTCTATGATAAACCGTAATTTATACAT
107673511 ATTTTTTTTGGTCTATGATAAACCGTAATTTATACAT
1 ATTTTTTTTGGTCTATGATAAACCGTAATTTATACAT
107673548 ATTTTT
1 ATTTTT
107673554 ACCCCATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (37 bp):
ATTTTTTTTGGTCTATGATAAACCGTAATTTATACAT
Found at i:107678572 original size:3 final size:3
Alignment explanation
Indices: 107678550--107678608 Score: 75
Period size: 3 Copynumber: 18.7 Consensus size: 3
107678540 GTACAATTTG
107678550 TAA TAA -AA TATA TAAA TAA TAA TAA TAA TAA TAA TAA TAGA TAAA TAA
1 TAA TAA TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA TAA
107678598 TAA TAA TAA TA
1 TAA TAA TAA TA
107678609 GTGAAAAAAG
Statistics
Matches: 51, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
2 2 0.04
3 39 0.76
4 8 0.16
5 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:107681153 original size:40 final size:41
Alignment explanation
Indices: 107681100--107681219 Score: 158
Period size: 40 Copynumber: 3.0 Consensus size: 41
107681090 CAACCGGAAA
107681100 TAACCACGT-GCACGAATGCCTTCGGGTCTTAGCCCGGATAG
1 TAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
107681141 -AACGACTCGCACGAATGCCTTCGGGTCTTAGCCCGGAT-G
1 TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
107681180 TAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
107681220 TAATTTCCAG
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
39 4 0.06
40 66 0.94
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (41 bp):
TAACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
Found at i:107688071 original size:46 final size:46
Alignment explanation
Indices: 107688004--107688095 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
107687994 AATATGGTAC
107688004 AACCTACTTTGCAGGAAATGAGTCTGAAGGAAGCACATGAGTCATT
1 AACCTACTTTGCAGGAAATGAGTCTGAAGGAAGCACATGAGTCATT
107688050 AACCTACTTTGCAGGAAATGAGTCTGAAGGAAGCACATGAGTCATT
1 AACCTACTTTGCAGGAAATGAGTCTGAAGGAAGCACATGAGTCATT
107688096 CTCAAGCAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (46 bp):
AACCTACTTTGCAGGAAATGAGTCTGAAGGAAGCACATGAGTCATT
Found at i:107689481 original size:45 final size:45
Alignment explanation
Indices: 107689412--107689895 Score: 315
Period size: 45 Copynumber: 10.8 Consensus size: 45
107689402 TTATAGCTTT
* * * *
107689412 AATCTACTCTACTGTAATTTCAGAGAGATAAGATTTGTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
* * *
107689457 AATCTGCGCCACTGCAACTTCAGAGAGATAACATTTGTTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
* * * * ** *
107689502 AATCTACTCCATTACAACTAT-AGAAAGATAAGA-TTCATAGCTGT-
1 AATCTGCTCCACTGCAACT-TCAGAGAGATAAGATTTGTTATCT-TC
** * * * *
107689546 AATCTATTCTACCGCAACTTCAGAGAAATAAGATTCG-TATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
* * ** * * *
107689590 AGTCTGCTCCATTTTAACCTTAAG-GAGATGAGAGTTT-TTATCTTT
1 AATCTGCTCCACTGCAA-CTTCAGAGAGATAAGA-TTTGTTATCTTC
* * * * * * * *
107689635 AA-CATGTTCCATTACAACTTTAGGGAGATAAGGTTTG-TAGCTTT
1 AATC-TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
* * * * * *
107689679 AATCTGCTCTACTACAACTTCAGAAAGATAAGATTCGCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
*
107689724 AATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGTTATCTTT
1 AATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGTTATCTTC
* * * * * * * *
107689769 AACCTGCTTCATTGCAACTTTAGGGAGATAAGGTTTG-TAGCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
* * * * * * *
107689813 AATCTGTTCTATTGCAACTTTAGATAGATAAGATTTGCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
107689858 AATCTGCTCCACTGCAACTTCAG-GAAGATAAGATTTGT
1 AATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGT
107689896 AACTTGTAGC
Statistics
Matches: 335, Mismatches: 87, Indels: 34
0.73 0.19 0.07
Matches are distributed among these distances:
43 2 0.01
44 128 0.38
45 203 0.61
46 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC
Found at i:107689579 original size:134 final size:133
Alignment explanation
Indices: 107689398--107689895 Score: 520
Period size: 134 Copynumber: 3.7 Consensus size: 133
107689388 AAGAGAGTTG
* * * * * *
107689398 AGATTTATAGCTTTAATCTACTCTACTGTAATTTCAGAGAGATAAGATTTGTTATCTTCAATCTG
1 AGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAAATAAGATTCGCTAACTTCAATCTG
* * * * * * **
107689463 CGCCACTGCAACTTCA-GAGAGATAACATTTGTTGTCTTCAATCTACTCCATTACAACTATAGAA
66 CTCCACTGCAACTTCAGGA-AGATAAGATTTGTTATCTTTAA-CTGCTCCATTACAACTTTAGGG
107689527 AGATA
129 AGATA
* * * * * *
107689532 AGATTCATAGCTGTAATCTATTCTACCGCAACTTCAGAGAAATAAGATTCG-TATCTTCAGTCTG
1 AGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAAATAAGATTCGCTAACTTCAATCTG
* ** * * *
107689596 CTCCATTTTAACCTTAAGG-AGATGAGAGTTT-TTATCTTTAACATGTTCCATTACAACTTTAGG
66 CTCCACTGCAA-CTTCAGGAAGATAAGA-TTTGTTATCTTTAAC-TGCTCCATTACAACTTTAGG
107689659 GAGATA
128 GAGATA
* * * *
107689665 AGGTTTGTAGCTTTAATCTGCTCTACTACAACTTCAGA-AAGATAAGATTCGCTAACTTCAATCT
1 AGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAA-ATAAGATTCGCTAACTTCAATCT
* * *
107689729 GCTCCACTGCAACTTCAAGAAGATAAGATTTGTTATCTTTAACCTGCTTCATTGCAACTTTAGGG
65 GCTCCACTGCAACTTCAGGAAGATAAGATTTGTTATCTTTAA-CTGCTCCATTACAACTTTAGGG
107689794 AGATA
129 AGATA
* * ** * * * * *
107689799 AGGTTTGTAGCTTTAATCTGTTCTATTGCAACTTTAGATAGATAAGATTTGCTAACTTCAATCTG
1 AGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAAATAAGATTCGCTAACTTCAATCTG
107689864 CTCCACTGCAACTTCAGGAAGATAAGATTTGT
66 CTCCACTGCAACTTCAGGAAGATAAGATTTGT
107689896 AACTTGTAGC
Statistics
Matches: 305, Mismatches: 49, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
132 3 0.01
133 102 0.33
134 197 0.65
135 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (133 bp):
AGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAAATAAGATTCGCTAACTTCAATCTG
CTCCACTGCAACTTCAGGAAGATAAGATTTGTTATCTTTAACTGCTCCATTACAACTTTAGGGAG
ATA
Found at i:107689818 original size:89 final size:88
Alignment explanation
Indices: 107689437--107689896 Score: 318
Period size: 89 Copynumber: 5.2 Consensus size: 88
107689427 AATTTCAGAG
* * ** * *
107689437 AGATAAGATTTGTTATCTTCAATCTGCGCCACTGCAACTTC-AGAGAGATAACATTTGTTGTCTT
1 AGATAAGATTTG-TAGCTTTAATCTGTTCCACTGCAACTTCAAGA-AGATAAGATTTG-TATCTT
* * *
107689501 CAATCTACTCCATTACAACTATAGAA
63 CAATCTGCTCCATTACAACTTTAGGA
** * * * * *
107689527 AGATAAGATTCATAGCTGTAATCTATTCTACCGCAACTTCAGAGAA-ATAAGATTCGTATCTTCA
1 AGATAAGATTTGTAGCTTTAATCTGTTCCACTGCAACTTCA-AGAAGATAAGATTTGTATCTTCA
* ** *
107689591 GTCTGCTCCATTTTAACCTTAAGG-
65 ATCTGCTCCATTACAA-CTTTAGGA
* * * * * * * * * * *
107689615 AGATGAGAGTTTTTATCTTTAA-CATGTTCCATTACAACTTTAGGGAGATAAGGTTTGTAGCTTT
1 AGATAAGA-TTTGTAGCTTTAATC-TGTTCCACTGCAACTTCAAGAAGATAAGATTTGTATCTTC
* * * *
107689679 AATCTGCTCTACTACAACTTCAGAA
64 AATCTGCTCCATTACAACTTTAGGA
* * * * *
107689704 AGATAAGATTCGCTAACTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGTTATCTTT
1 AGATAAGATTTG-TAGCTTTAATCTGTTCCACTGCAACTTCAAGAAGATAAGATTTG-TATCTTC
* * * *
107689769 AACCTGCTTCATTGCAACTTTAGGG
64 AATCTGCTCCATTACAACTTTAGGA
* * * * *
107689794 AGATAAGGTTTGTAGCTTTAATCTGTTCTATTGCAACTT-TAGATAGATAAGATTTGCTAACTTC
1 AGATAAGATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGA-AGATAAGATTTG-TATCTTC
* * *
107689858 AATCTGCTCCACTGCAACTTCAGGA
64 AATCTGCTCCATTACAACTTTAGGA
107689883 AGATAAGATTTGTA
1 AGATAAGATTTGTA
107689897 ACTTGTAGCT
Statistics
Matches: 277, Mismatches: 82, Indels: 23
0.73 0.21 0.06
Matches are distributed among these distances:
88 39 0.14
89 190 0.69
90 45 0.16
91 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (88 bp):
AGATAAGATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGAAGATAAGATTTGTATCTTCAA
TCTGCTCCATTACAACTTTAGGA
Found at i:107690055 original size:94 final size:93
Alignment explanation
Indices: 107689954--107690458 Score: 532
Period size: 94 Copynumber: 5.4 Consensus size: 93
107689944 CTACGATAGA
* * * * *
107689954 TTTAATCCTACCCACTGTAACTTTAGAGGTATAGGATTTGTCGCTTCAATCTGCTCTACTACAAC
1 TTTAAT-CTACCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAAC
* *
107690019 TTTAGGGAGATAAGATTCTCCAT-AGTAGA-
65 TTCAGAGAGATAAGATTCTCCATGA-TA-AC
* * * * *
107690048 TTTAATCCAACCTACTACAACTTTAGAGGTATAAGACTTGTGGCTTTAATCTGCTCCACTGCAAC
1 TTTAAT-CTACCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAAC
107690113 TTCAGAGAGATAAGATT-TGCCATGATAAC
65 TTCAGAGAGATAAGATTCT-CCATGATAAC
* * * * *
107690142 TTCAATCTGTCCCACTGCAACTTCAGAGGTATGGGATTTGTGGCTTTAATCTTCTCCACTGCAAC
1 TTTAATCT-ACCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAAC
* * *
107690207 TTCAGAGATATGAGATTCACCATGATAAC
65 TTCAGAGAGATAAGATTCTCCATGATAAC
* * * * *
107690236 TTCT-ATCTGTCCCATTGCAACTTTAGGGGTATAGGATTTGTGGCTTTAATCTACTCCACTGCTA
1 TT-TAATCT-ACCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAA
* *
107690300 CTTCAGGGAGATAAGATTCACCATGATAAC
64 CTTCAGAGAGATAAGATTCTCCATGATAAC
** * * * * * * *
107690330 TTCGATTTATCCTACTGTAACTTCAGGGGTATAGGATTTTTGGCTTTAATCTGCTCCACTACAAC
1 TTTAATCTA-CCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAAC
*
107690395 TTCAGAGAGATAAGATTTTCCATGATAAC
65 TTCAGAGAGATAAGATTCTCCATGATAAC
* * *
107690424 TTCAATCTATCCCACTGCAACTTCAGGGGTATAGG
1 TTTAATCTA-CCCACTGCAACTTTAGAGGTATAGG
107690459 CTTTATGGTT
Statistics
Matches: 350, Mismatches: 53, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
93 3 0.01
94 346 0.99
95 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (93 bp):
TTTAATCTACCCACTGCAACTTTAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTGCAACT
TCAGAGAGATAAGATTCTCCATGATAAC
Found at i:107690113 original size:44 final size:44
Alignment explanation
Indices: 107690065--107690412 Score: 161
Period size: 44 Copynumber: 7.5 Consensus size: 44
107690055 CAACCTACTA
* *
107690065 CAACTTTAGAGGTATAAGACTTGTGGCTTTAATCTGCTCCACTG
1 CAACTTCAGAGGTATAAGATTTGTGGCTTTAATCTGCTCCACTG
* *
107690109 CAACTTCAGAGAG-ATAAGATTTGCCATGATAACTTCAATCTG-TCCCACTG
1 CAACTTCAGAG-GTATAAGATTTG---TG---GCTTTAATCTGCT-CCACTG
** *
107690159 CAACTTCAGAGGTATGGGATTTGTGGCTTTAATCTTCTCCACTG
1 CAACTTCAGAGGTATAAGATTTGTGGCTTTAATCTGCTCCACTG
* * ** *
107690203 CAACTTCAGAGATATGAGATTCACCATGATAACTTCT-ATCTG-TCCCATTG
1 CAACTTCAGAGGTATAAGATT-----TG-TGGCTT-TAATCTGCT-CCACTG
* * * *
107690253 CAACTTTAGGGGTATAGGATTTGTGGCTTTAATCTACTCCACTG
1 CAACTTCAGAGGTATAAGATTTGTGGCTTTAATCTGCTCCACTG
* * ** ** **
107690297 CTACTTCAG-GGAGATAAGATTCACCATGATAACTTCGAT-TTATCCTACTG
1 CAACTTCAGAGG-TATAAGATT-----TG-TGGCTTTAATCTGCTCC-ACTG
* * * * *
107690347 TAACTTCAGGGGTATAGGATTTTTGGCTTTAATCTGCTCCACTA
1 CAACTTCAGAGGTATAAGATTTGTGGCTTTAATCTGCTCCACTG
107690391 CAACTTCAGAGAG-ATAAGATTT
1 CAACTTCAGAG-GTATAAGATTT
107690413 TCCATGATAA
Statistics
Matches: 224, Mismatches: 49, Indels: 62
0.67 0.15 0.19
Matches are distributed among these distances:
43 3 0.01
44 105 0.47
45 11 0.05
47 4 0.02
49 11 0.05
50 87 0.39
51 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
CAACTTCAGAGGTATAAGATTTGTGGCTTTAATCTGCTCCACTG
Found at i:107690180 original size:50 final size:51
Alignment explanation
Indices: 107690095--107690456 Score: 190
Period size: 50 Copynumber: 7.6 Consensus size: 51
107690085 TTGTGGCTTT
107690095 AATCTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGCCATGATAACTTC
1 AATCTGTCTCCACTGCAACTTCAGAG-GTATAAGATTTGCCATGATAACTTC
** * *
107690145 AATCTGTC-CCACTGCAACTTCAGAGGTATGGGATTTG---TG---GCTTT
1 AATCTGTCTCCACTGCAACTTCAGAGGTATAAGATTTGCCATGATAACTTC
* * **
107690189 AATCT-TCTCCACTGCAACTTCAGAGATATGAGATTCACCATGATAACTTC
1 AATCTGTCTCCACTGCAACTTCAGAGGTATAAGATTTGCCATGATAACTTC
* * * * * * *
107690239 TATCTGTC-CCATTGCAACTTTAGGGGTATAGGATTTG---TG---GCTTT
1 AATCTGTCTCCACTGCAACTTCAGAGGTATAAGATTTGCCATGATAACTTC
* * * **
107690283 AATCT-ACTCCACTGCTACTTCAG-GGAGATAAGATTCACCATGATAACTTC
1 AATCTGTCTCCACTGCAACTTCAGAGG-TATAAGATTTGCCATGATAACTTC
* * * * * ** *
107690333 GAT-T-TATCCTACTGTAACTTCAGGGGTATAGGATTT----T--TGGCTTT
1 AATCTGTCTCC-ACTGCAACTTCAGAGGTATAAGATTTGCCATGATAACTTC
* *
107690377 AATCTG-CTCCACTACAACTTCAGAGAG-ATAAGATTTTCCATGATAACTTC
1 AATCTGTCTCCACTGCAACTTCAGAG-GTATAAGATTTGCCATGATAACTTC
* *
107690427 AATCTATC-CCACTGCAACTTCAGGGGTATA
1 AATCTGTCTCCACTGCAACTTCAGAGGTATA
107690457 GGCTTTATGG
Statistics
Matches: 226, Mismatches: 55, Indels: 62
0.66 0.16 0.18
Matches are distributed among these distances:
43 5 0.02
44 85 0.38
45 5 0.02
46 1 0.00
47 8 0.04
48 1 0.00
49 6 0.03
50 109 0.48
51 6 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (51 bp):
AATCTGTCTCCACTGCAACTTCAGAGGTATAAGATTTGCCATGATAACTTC
Found at i:107690457 original size:188 final size:188
Alignment explanation
Indices: 107689964--107690458 Score: 625
Period size: 188 Copynumber: 2.6 Consensus size: 188
107689954 TTTAATCCTA
* * * * * *
107689964 CCCACTGTAACTTTAGAGGTATAGGATTTGTCGCTTCAATCTGCTCTACTACAACTTTAGGGAGA
1 CCCACTGTAACTTCAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAGAGAGA
* * * * * * *
107690029 TAAGATTCTCCAT-AGTAGA-TTTAATCCAACCTACTACAACTTTAGAGGTATAAGACTTGTGGC
66 TAAGATTCTCCATGA-TA-ACTTCAATCTATCCCACTGCAACTTTAGGGGTATAGGACTTGTGGC
* ** *
107690092 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATGATAACTTCAATCTGT
129 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCACCATGATAACTTCAATCTAT
* * * * *
107690152 CCCACTGCAACTTCAGAGGTATGGGATTTGTGGCTTTAATCTTCTCCACTGCAACTTCAGAGATA
1 CCCACTGTAACTTCAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAGAGAGA
* * * * * *
107690217 TGAGATTCACCATGATAACTTCTATCTGTCCCATTGCAACTTTAGGGGTATAGGATTTGTGGCTT
66 TAAGATTCTCCATGATAACTTCAATCTATCCCACTGCAACTTTAGGGGTATAGGACTTGTGGCTT
* * * *
107690282 TAATCTACTCCACTGCTACTTCAGGGAGATAAGATTCACCATGATAACTTCGATTTAT
131 TAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCACCATGATAACTTCAATCTAT
* * *
107690340 CCTACTGTAACTTCAGGGGTATAGGATTTTTGGCTTTAATCTGCTCCACTACAACTTCAGAGAGA
1 CCCACTGTAACTTCAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAGAGAGA
* *
107690405 TAAGATTTTCCATGATAACTTCAATCTATCCCACTGCAACTTCAGGGGTATAGG
66 TAAGATTCTCCATGATAACTTCAATCTATCCCACTGCAACTTTAGGGGTATAGG
107690459 CTTTATGGTT
Statistics
Matches: 258, Mismatches: 47, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
187 1 0.00
188 256 0.99
189 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (188 bp):
CCCACTGTAACTTCAGAGGTATAGGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAGAGAGA
TAAGATTCTCCATGATAACTTCAATCTATCCCACTGCAACTTTAGGGGTATAGGACTTGTGGCTT
TAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCACCATGATAACTTCAATCTAT
Found at i:107697152 original size:40 final size:38
Alignment explanation
Indices: 107697060--107697156 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 38
107697050 ACCATCTCCG
*
107697060 TCCAACCC-ATCACACCATGTAGGGATAAAATCGACCCA
1 TCCAACCCTA-CACACCATATAGGGATAAAATCGACCCA
* * * *
107697098 -CCTATCCTTGCACACCATATATGGGGATATAATCGACCCA
1 TCC-AACCCTACACACCATATA--GGGATAAAATCGACCCA
107697138 TCCAACCCTACACACCATA
1 TCCAACCCTACACACCATA
107697157 AGGAACCGTA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
37 2 0.04
38 13 0.28
40 29 0.63
41 2 0.04
ACGTcount: A:0.34, C:0.35, G:0.11, T:0.20
Consensus pattern (38 bp):
TCCAACCCTACACACCATATAGGGATAAAATCGACCCA
Found at i:107702954 original size:13 final size:13
Alignment explanation
Indices: 107702917--107702955 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
107702907 ACAATTTGTA
107702917 ATAAAATATATAA-
1 ATAAAATA-ATAAT
107702930 AT-AAATAATAAT
1 ATAAAATAATAAT
107702942 ATAAAATAATAAT
1 ATAAAATAATAAT
107702955 A
1 A
107702956 ATTGTGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.17
12 7 0.29
13 13 0.54
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAAATAATAAT
Found at i:107702999 original size:4 final size:4
Alignment explanation
Indices: 107702982--107703024 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
107702972 AAAATAAAAC
**
107702982 AAAT AAAT GTAT AAAT -AA- AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
107703025 CAAAGAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 4 0.12
4 29 0.88
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:107703007 original size:22 final size:22
Alignment explanation
Indices: 107702973--107703039 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
107702963 AAAAAAGAAA
**
107702973 AAAT-AAAACAAATAAATGTAT
1 AAATAAAAACAAATAAATAAAT
*
107702994 AAATAAAAATAAATAAATAAAT
1 AAATAAAAACAAATAAATAAAT
* *
107703016 AAATAAATACAAAGAAA-AAAT
1 AAATAAAAACAAATAAATAAAT
107703037 AAA
1 AAA
107703040 GTATAAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.28
22 28 0.72
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (22 bp):
AAATAAAAACAAATAAATAAAT
Found at i:107703011 original size:26 final size:25
Alignment explanation
Indices: 107702971--107703046 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 25
107702961 GAAAAAAAGA
107702971 AAAAATAAAACAAATAAATGTATAAAT
1 AAAAAT-AAA-AAATAAATGTATAAAT
**
107702998 AAAAATAAATAAATAAATAAATAAAT
1 AAAAATAAA-AAATAAATGTATAAAT
* *
107703024 ACAAAGAAAAAATAAA-GTATAAA
1 AAAAATAAAAAATAAATGTATAAA
107703047 AAATTAAAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 5 0.12
25 7 0.17
26 24 0.57
27 6 0.14
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.20
Consensus pattern (25 bp):
AAAAATAAAAAATAAATGTATAAAT
Found at i:107704278 original size:6 final size:6
Alignment explanation
Indices: 107704267--107704297 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
107704257 TTTGGTGCTG
*
107704267 TTAATT TTAATT TTAATT TTAATT TTTATT T
1 TTAATT TTAATT TTAATT TTAATT TTAATT T
107704298 GGTTTAGGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTAATT
Found at i:107705331 original size:24 final size:25
Alignment explanation
Indices: 107705287--107705334 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
107705277 AAATAAAATT
*
107705287 TTTAAAATATAATAAATCAAATATA
1 TTTAAAATATAATAAAACAAATATA
*
107705312 TTTAAAA-ATATTAAAACAAATAT
1 TTTAAAATATAATAAAACAAATAT
107705335 TAAAACAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TTTAAAATATAATAAAACAAATATA
Found at i:107705332 original size:12 final size:12
Alignment explanation
Indices: 107705317--107705342 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
107705307 ATATATTTAA
107705317 AAATATTAAAAC
1 AAATATTAAAAC
107705329 AAATATTAAAAC
1 AAATATTAAAAC
107705341 AA
1 AA
107705343 GAAACAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:107706221 original size:22 final size:22
Alignment explanation
Indices: 107706162--107706237 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
107706152 TAAAATTTCG
107706162 TATCATAT-TACATATCAAAGCA
1 TATCATATATA-ATATCAAAGCA
* *
107706184 TGTCATATATCATATCAAAGCA
1 TATCATATATAATATCAAAGCA
* * *
107706206 TATCATGTA-AAGTATCAGAGCT
1 TATCATATATAA-TATCAAAGCA
107706228 TATCATATAT
1 TATCATATAT
107706238 CGTACTAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.02
22 41 0.95
23 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (22 bp):
TATCATATATAATATCAAAGCA
Found at i:107707629 original size:2 final size:2
Alignment explanation
Indices: 107707622--107707648 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107707612 GACAACCAAA
107707622 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
107707649 GTACAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107712217 original size:29 final size:30
Alignment explanation
Indices: 107712185--107712243 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
107712175 TATGGTTTAA
*
107712185 TGTGTAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
107712214 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
107712244 GATCCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:107712252 original size:30 final size:29
Alignment explanation
Indices: 107712190--107712252 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
107712180 TTTAATGTGT
*
107712190 AATTGTATACATGAACTTTGATTTTGTGC
1 AATTGTATACATGAACTTTGATTTTGTCC
* *
107712219 AATTTTATACATGAAATTTTGA-TTTGATCC
1 AATTGTATACATG-AACTTTGATTTTG-TCC
107712249 AATT
1 AATT
107712253 CTTGTAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (29 bp):
AATTGTATACATGAACTTTGATTTTGTCC
Found at i:107722155 original size:51 final size:51
Alignment explanation
Indices: 107722065--107722164 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
107722055 TGGATGCAAG
*
107722065 CATCCGAGCTCGTTAAGAGGTCCGAGTTCATGGTAGATGTGATT-CATGTAA
1 CATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATAGATGTG-TTACATGTAA
* * * * * *
107722116 CATCCGAGTTTGTTGAGAGGTCTGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATAGATGTGTTACATGT
107722165 TATGTGGTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (51 bp):
CATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATAGATGTGTTACATGTAA
Found at i:107723452 original size:27 final size:28
Alignment explanation
Indices: 107723412--107723470 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
107723402 TTGGACACGG
*
107723412 GTGATGACACGGGCATGT-CTAGGCCGT
1 GTGAGGACACGGGCATGTGCTAGGCCGT
* * *
107723439 GTGAGGACATGGGCATGTGCTTGGCTGT
1 GTGAGGACACGGGCATGTGCTAGGCCGT
107723467 GTGA
1 GTGA
107723471 AAACCCCTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.17, C:0.17, G:0.41, T:0.25
Consensus pattern (28 bp):
GTGAGGACACGGGCATGTGCTAGGCCGT
Found at i:107723582 original size:83 final size:83
Alignment explanation
Indices: 107723454--107723614 Score: 268
Period size: 83 Copynumber: 1.9 Consensus size: 83
107723444 GACATGGGCA
* * *
107723454 TGTGCTTGGCTGTGTGAAAACCCCTGTAGGTTTGAAATCAAAAATAAATTCTAAAAATTCCACAC
1 TGTGCTTGGCCGTGTGAAAACCCCTATAGGTTCGAAATCAAAAATAAATTCTAAAAATTCCACAC
*
107723519 GGGTAAGGGACACAGGCG
66 AGGTAAGGGACACAGGCG
* *
107723537 TGTGCTTGGCCGTGTGAAAACCCCTATAGGTTCGAAATGAAAAATAAATTCTAAAAATTCCACAT
1 TGTGCTTGGCCGTGTGAAAACCCCTATAGGTTCGAAATCAAAAATAAATTCTAAAAATTCCACAC
107723602 AGGTAAGGGACAC
66 AGGTAAGGGACAC
107723615 GGGCTTGTCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 72 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (83 bp):
TGTGCTTGGCCGTGTGAAAACCCCTATAGGTTCGAAATCAAAAATAAATTCTAAAAATTCCACAC
AGGTAAGGGACACAGGCG
Found at i:107724803 original size:20 final size:20
Alignment explanation
Indices: 107724778--107724859 Score: 155
Period size: 20 Copynumber: 4.1 Consensus size: 20
107724768 CATGCACTAA
*
107724778 GCGTGTGAAGATGCACACGG
1 GCGTGTGAAGACGCACACGG
107724798 GCGTGTGAAGACGCACACGG
1 GCGTGTGAAGACGCACACGG
107724818 GCGTGTGAAGACGCACACGG
1 GCGTGTGAAGACGCACACGG
107724838 GCGTGTGAAGACGCACACGG
1 GCGTGTGAAGACGCACACGG
107724858 GC
1 GC
107724860 ATGTAAGATA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.24, C:0.24, G:0.40, T:0.11
Consensus pattern (20 bp):
GCGTGTGAAGACGCACACGG
Found at i:107725975 original size:42 final size:42
Alignment explanation
Indices: 107725912--107726038 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
107725902 CTTCGTTTTC
** * *
107725912 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
107725955 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
107725996 TCGATGCCCTAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
107726037 TC
1 TC
107726039 TCACTGATGT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 10 0.13
42 63 0.84
43 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:107726103 original size:47 final size:46
Alignment explanation
Indices: 107725997--107726118 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 46
107725987 ATTCATATAT
* * * * * *
107725997 CGATGCCCTAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * *
107726043 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
107726090 CGATGCCATATCCCAGATATGGTCTTATA
1 CGATGCCATATCCCAGATATGGTCTTATA
107726119 TGGAAATCAC
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 24 0.38
47 39 0.62
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:107726180 original size:31 final size:31
Alignment explanation
Indices: 107726145--107726324 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
107726135 CTTGTCACTT
*
107726145 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
107726176 GTAGCCGAAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
107726207 GTAGCCGGAGCTACTACTTTTCATTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
107726238 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
107726269 GTAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
107726300 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
107726325 TGTCATTTGT
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 3 0.02
31 128 0.96
32 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:107726406 original size:50 final size:51
Alignment explanation
Indices: 107726307--107726428 Score: 185
Period size: 50 Copynumber: 2.4 Consensus size: 51
107726297 CAGGTAGCTG
* *
107726307 AAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
1 AAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
* *
107726358 AAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGTGTAGCCA
107726408 AAGCTATCACTTATCACTTGT
1 AAGCTATCACTTATCACTTGT
107726429 TGCCATGGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
50 44 0.68
51 21 0.32
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCA
Found at i:107732641 original size:16 final size:17
Alignment explanation
Indices: 107732620--107732655 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
107732610 ATGTTTGTTA
107732620 AAATTTT-GATTAAAGT
1 AAATTTTAGATTAAAGT
107732636 AAATTTTAGATTAAAGT
1 AAATTTTAGATTAAAGT
107732653 AAA
1 AAA
107732656 ACCAAAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
AAATTTTAGATTAAAGT
Found at i:107734178 original size:20 final size:18
Alignment explanation
Indices: 107734125--107734180 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 18
107734115 GTTTCAAAGC
107734125 TATATACCTAGAGTG-TT
1 TATATACCTAGAGTGTTT
*
107734142 TATATGACTTATG-GTGTATT
1 TATAT-ACCTA-GAGTGT-TT
107734162 TAATATACCTAGAGTGTTT
1 T-ATATACCTAGAGTGTTT
107734181 ATTCACGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
17 5 0.16
18 7 0.23
19 4 0.13
20 11 0.35
21 4 0.13
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.45
Consensus pattern (18 bp):
TATATACCTAGAGTGTTT
Found at i:107737739 original size:19 final size:18
Alignment explanation
Indices: 107737698--107737732 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107737688 TTCTTATCGA
* *
107737698 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTTCAT
107737716 AAAATAATTAAATTTCA
1 AAAATAATTAAATTTCA
107737733 CTTAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAATTTCAT
Found at i:107738888 original size:18 final size:18
Alignment explanation
Indices: 107738829--107738981 Score: 204
Period size: 18 Copynumber: 8.6 Consensus size: 18
107738819 CAATGATATG
* *
107738829 CAATCTTAGATGTGATATG
1 CAATCTTAGATATGAT-TA
*
107738848 GAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
107738865 CAATCTTAGATATGATTT
1 CAATCTTAGATATGATTA
107738883 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
107738900 CAACCTTAGATATGATTG
1 CAATCTTAGATATGATTA
107738918 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
107738935 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
107738953 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
107738972 CAATCTTAGA
1 CAATCTTAGA
107738982 AGATATGATT
Statistics
Matches: 118, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
17 46 0.39
18 48 0.41
19 24 0.20
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:107738894 original size:35 final size:35
Alignment explanation
Indices: 107738829--107738981 Score: 243
Period size: 35 Copynumber: 4.3 Consensus size: 35
107738819 CAATGATATG
* *
107738829 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
107738865 CAATCTTAGATATGATTTCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
107738900 CAACCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
107738935 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
107738972 CAATCTTAGA
1 CAATCTTAGA
107738982 AGATATGATT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
35 81 0.74
36 15 0.14
37 13 0.12
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:107745638 original size:20 final size:20
Alignment explanation
Indices: 107745613--107745679 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
107745603 ATTTTGATAT
107745613 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
107745633 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
107745653 ACATGATCTGTATGATATGC
1 ACATGATATGTATGATATGC
107745673 ACATGAT
1 ACATGAT
107745680 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:107745640 original size:11 final size:11
Alignment explanation
Indices: 107745624--107745679 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
107745614 CATGATTGAT
107745624 ATGATATGCAC
1 ATGATATGCAC
*
107745635 ATGATATG--T
1 ATGATATGCAC
107745644 ATGATATGCAC
1 ATGATATGCAC
* *
107745655 ATGATCTG--T
1 ATGATATGCAC
107745664 ATGATATGCAC
1 ATGATATGCAC
107745675 ATGAT
1 ATGAT
107745680 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:107745756 original size:24 final size:24
Alignment explanation
Indices: 107745729--107745822 Score: 122
Period size: 23 Copynumber: 4.0 Consensus size: 24
107745719 GAGGAAGTAC
107745729 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
107745753 AAAAGGGCTTATG-CCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
107745776 AAAAGGGCTT-TGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
107745799 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
107745823 ATGATAAAGT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
22 2 0.03
23 33 0.54
24 19 0.31
25 7 0.11
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:107747524 original size:1 final size:1
Alignment explanation
Indices: 107747518--107747613 Score: 66
Period size: 1 Copynumber: 96.0 Consensus size: 1
107747508 CTTCTATTTC
* * * * * * * * * *
107747518 AAAAAAAAAGAAAAAAATAAAAGAAAATAAAGAAAATAAAAATAGAAAAAAGAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
107747583 AAAGAAAAAAGAAAAAAGAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
107747614 TGGAGAGGCG
Statistics
Matches: 67, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.04
Consensus pattern (1 bp):
A
Found at i:107747533 original size:8 final size:8
Alignment explanation
Indices: 107747520--107747613 Score: 95
Period size: 8 Copynumber: 11.6 Consensus size: 8
107747510 TCTATTTCAA
107747520 AAAAAAAG
1 AAAAAAAG
*
107747528 AAAAAAATA
1 AAAAAAA-G
*
107747537 AAAGAAAAT
1 AAA-AAAAG
*
107747546 AAAGAAAAT
1 AAA-AAAAG
*
107747555 AAAAATAG
1 AAAAAAAG
107747563 -AAAAAAG
1 AAAAAAAG
107747570 AAAAAAAG
1 AAAAAAAG
107747578 AAAAAAA-
1 AAAAAAAG
107747585 AGAAAAAAG
1 A-AAAAAAG
107747594 -AAAAAAG
1 AAAAAAAG
107747601 AAAAAAAG
1 AAAAAAAG
107747609 AAAAA
1 AAAAA
107747614 TGGAGAGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
7 14 0.19
8 42 0.56
9 15 0.20
10 4 0.05
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:107747561 original size:15 final size:14
Alignment explanation
Indices: 107747521--107747613 Score: 89
Period size: 15 Copynumber: 6.4 Consensus size: 14
107747511 CTATTTCAAA
*
107747521 AAAAAAGAAAAAAAT
1 AAAAAA-AAAAAAAG
* *
107747536 AAAAGAAAATAAAG
1 AAAAAAAAAAAAAG
* *
107747550 -AAAATAAAAATAG
1 AAAAAAAAAAAAAG
107747563 AAAAAAGAAAAAAAG
1 AAAAAA-AAAAAAAG
107747578 AAAAAAAAGAAAAAAG
1 -AAAAAAA-AAAAAAG
107747594 AAAAAAGAAAAAAAG
1 AAAAAA-AAAAAAAG
107747609 AAAAA
1 AAAAA
107747614 TGGAGAGGCG
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
13 9 0.14
14 10 0.16
15 31 0.48
16 14 0.22
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:107747568 original size:24 final size:23
Alignment explanation
Indices: 107747518--107747613 Score: 99
Period size: 22 Copynumber: 4.2 Consensus size: 23
107747508 CTTCTATTTC
*
107747518 AAAAAAAAAGAAAAAAATAAAAG
1 AAAAAAAAAGAAAAAAAAAAAAG
* * *
107747541 -AAAATAAAGAAAATAAAAATAG
1 AAAAAAAAAGAAAAAAAAAAAAG
107747563 AAAAAAGAAA-AAAAGAAAAAAAAG
1 AAAAAA-AAAGAAAA-AAAAAAAAG
* *
107747587 AAAAAAGAA-AAAAGAAAAAAAG
1 AAAAAAAAAGAAAAAAAAAAAAG
107747609 AAAAA
1 AAAAA
107747614 TGGAGAGGCG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
22 31 0.51
23 14 0.23
24 16 0.26
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.04
Consensus pattern (23 bp):
AAAAAAAAAGAAAAAAAAAAAAG
Found at i:107748668 original size:41 final size:41
Alignment explanation
Indices: 107748615--107748752 Score: 111
Period size: 41 Copynumber: 3.3 Consensus size: 41
107748605 GATCTTATCT
*
107748615 CCCTAAGTAGTAGTGGAGCAGATCGAAGACT-CGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGA-TACGCCTTAACC
* * * * * * *
107748656 CCCTAAGCAGTAG-GGTAACAGGTC-AAAATTGCGAATCTTATCT
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-TACG--CCTTAACC
* * *
107748699 CCATAAGTAGTAGTGGAGTAGATCGAAGATACGCCTTAACC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGATACGCCTTAACC
107748740 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
107748753 GGTAATAGGT
Statistics
Matches: 71, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
40 6 0.08
41 36 0.51
43 24 0.34
44 5 0.07
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (41 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGATACGCCTTAACC
Found at i:107748706 original size:84 final size:84
Alignment explanation
Indices: 107748562--107748762 Score: 307
Period size: 84 Copynumber: 2.4 Consensus size: 84
107748552 CAAAATTCAG
* * * * *
107748562 CGCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAGATCTTATCTCCATAAGTAGTA
107748627 GTGGAGCAGATCGAAGACT-
66 GTGGAGCAGATCGAAGA-TA
107748646 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGC-GAATCTTATCTCCATAAGTAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAG-ATCTTATCTCCATAAGTAGT
*
107748710 AGTGGAGTAGATCGAAGATA
65 AGTGGAGCAGATCGAAGATA
*
107748730 CGCCTTAACCCCCTAAGCAGTAGGGTAATAGGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGT
107748763 TAAAGTATAG
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
83 2 0.02
84 106 0.98
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (84 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCAGATCTTATCTCCATAAGTAGTA
GTGGAGCAGATCGAAGATA
Done.