Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 371 of 444
Found at i:107749364 original size:207 final size:207
Alignment explanation
Indices: 107748888--107750017 Score: 1897
Period size: 207 Copynumber: 5.5 Consensus size: 207
107748878 CGACGAAAAG
* * *
107748888 CAAATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGATGAAACAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
*
107748953 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
107749018 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGTAAGAT-CAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
107749082 GCTTACAAGGAA
196 GCTTACAAGGAA
* * *
107749094 CAAATCGAAGACATAGCTAATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
107749159 ACATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
107749224 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
107749289 GCTTACAAAGAA
196 GCTTACAAGGAA
107749301 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
*
107749366 CCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
107749431 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
107749496 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
107749508 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
107749573 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
107749638 CATAGCAGATTTGGCCTTCA-AGTGTTTATACTGAAGTAAGATCCAAGATGGTTTGGCATCCTTG
131 CATAGCAGATCTGGCCTTCAGA-TGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
107749702 TGCTTACAAGGAA
195 TGCTTACAAGGAA
* *
107749715 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAACAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
107749780 GCATCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* ** * * *
107749845 TATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
107749909 GCTTACAAGGAG
196 GCTTACAAGGAA
* * * *
107749921 CAAATTGAAGACATAGCTGATTTGGCTTTCGCGTGTTTATGCTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
107749986 GCATCTCTATATTGTCAGGGAACAAATTGAAG
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAG
107750018 AAGCAGATTT
Statistics
Matches: 871, Mismatches: 50, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
206 285 0.33
207 585 0.67
208 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:107750475 original size:18 final size:18
Alignment explanation
Indices: 107750417--107750533 Score: 157
Period size: 18 Copynumber: 6.5 Consensus size: 18
107750407 AATGATATGA
* **
107750417 AATCTTAGATGTGATATGG
1 AATCTTAGATATGAT-TAC
107750436 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
107750453 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
107750471 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
107750488 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
107750506 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
107750525 AATCTTAGA
1 AATCTTAGA
107750534 AGATATGATT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
17 31 0.35
18 33 0.38
19 24 0.27
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:107750480 original size:35 final size:35
Alignment explanation
Indices: 107750417--107750533 Score: 189
Period size: 35 Copynumber: 3.3 Consensus size: 35
107750407 AATGATATGA
* *
107750417 AATCTTAGATGTGATATGGAATCTTAGATATGATAC
1 AATCTTAGATATGAT-TGCAATCTTAGATATGATAC
107750453 AATCTTAGATATGATTGCAATCTTAGATATGATAC
1 AATCTTAGATATGATTGCAATCTTAGATATGATAC
107750488 AATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTAGATATGATTGCAATCTTAGATATG--ATAC
107750525 AATCTTAGA
1 AATCTTAGA
107750534 AGATATGATT
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 50 0.65
36 14 0.18
37 13 0.17
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (35 bp):
AATCTTAGATATGATTGCAATCTTAGATATGATAC
Found at i:107752843 original size:29 final size:30
Alignment explanation
Indices: 107752789--107752868 Score: 99
Period size: 29 Copynumber: 2.6 Consensus size: 30
107752779 ATCTCAAAAT
* *
107752789 TATACATGAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTT-ATGTGCAATTG
*
107752820 TATACATGAACTTTGATTT-TGTGCAATTT
1 TATACATGAACTTTGATTTATGTGCAATTG
*
107752849 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
107752869 GATCCAATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 17 0.39
30 10 0.23
31 17 0.39
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (30 bp):
TATACATGAACTTTGATTTATGTGCAATTG
Found at i:107752877 original size:30 final size:29
Alignment explanation
Indices: 107752789--107752877 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
107752779 ATCTCAAAAT
* * *
107752789 TATACATGAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTT--TGTCCAATTG
* *
107752820 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTCCAATTG
*
107752849 TATACATGAAATTTTGA-TTTGATCCAATT
1 TATACATG-AACTTTGATTTTG-TCCAATT
107752878 CTTGTAAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
29 21 0.41
30 13 0.25
31 17 0.33
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTCCAATTG
Found at i:107753114 original size:16 final size:16
Alignment explanation
Indices: 107753092--107753146 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
107753082 GTTTGGTTCA
*
107753092 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* * *
107753108 TTGTAATTGAACAGAG
1 CTGTAATGGAATAGAG
107753124 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
107753140 CTATAAT
1 CTGTAAT
107753147 AAGTAATTCA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:107757437 original size:4 final size:4
Alignment explanation
Indices: 107757428--107757453 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
107757418 AGTAAATTAG
107757428 TAGA TAGA TAGA TAGA TAGA TAGA TA
1 TAGA TAGA TAGA TAGA TAGA TAGA TA
107757454 AATTGATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (4 bp):
TAGA
Found at i:107758001 original size:18 final size:18
Alignment explanation
Indices: 107757978--107758014 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
107757968 CTAGTAGAAT
107757978 AAGTAAATATTTATAACA
1 AAGTAAATATTTATAACA
107757996 AAGTAAATATTTATAACA
1 AAGTAAATATTTATAACA
107758014 A
1 A
107758015 GAAAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (18 bp):
AAGTAAATATTTATAACA
Found at i:107758696 original size:14 final size:15
Alignment explanation
Indices: 107758671--107758705 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
107758661 TAATGGAGAA
*
107758671 TATTTTTAATTTATT
1 TATTTTTAATTTATC
107758686 TATTTTT-ATTTATC
1 TATTTTTAATTTATC
107758700 TATTTT
1 TATTTT
107758706 AATATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (15 bp):
TATTTTTAATTTATC
Found at i:107760008 original size:67 final size:67
Alignment explanation
Indices: 107759930--107760058 Score: 188
Period size: 67 Copynumber: 1.9 Consensus size: 67
107759920 AGTCCTTTTC
*
107759930 AGAGAACACACTCCCGCAAACCTCATTTATTACAGC-AGGATTACCAGTCCAGGCTAAATCCCCT
1 AGAGAACACACTCCCACAAACCTCATTTATTACAGCGA-GATTACCAGTCCAGGCTAAATCCCCT
107759994 ATA
65 ATA
* ** * *
107759997 AGAGAGCACACTCCCATGAACCTCATTTTTTACAGCGAGATTACTAGTCCAGGCTAAATCCC
1 AGAGAACACACTCCCACAAACCTCATTTATTACAGCGAGATTACCAGTCCAGGCTAAATCCC
107760059 TTGTAACATA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 54 0.98
68 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (67 bp):
AGAGAACACACTCCCACAAACCTCATTTATTACAGCGAGATTACCAGTCCAGGCTAAATCCCCTA
TA
Found at i:107760282 original size:58 final size:58
Alignment explanation
Indices: 107760187--107760388 Score: 314
Period size: 58 Copynumber: 3.5 Consensus size: 58
107760177 CATTTACTTT
* * * *
107760187 GGATTACCCGTCCGGGCTAAATCCATTTCACACATATTCTTCGGGAAGGCTTATATCA
1 GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATCA
* *
107760245 GGATCACCCGTCCAGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATTA
1 GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATCA
* * *
107760303 GGATCACTCGTCTGGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGATTATATCA
1 GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATCA
*
107760361 GGATTACCCGTCCGGGCTAGATCCTTTT
1 GGATCACCCGTCCGGGCTAGATCCTTTT
107760389 TACCATCAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 130 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.31
Consensus pattern (58 bp):
GGATCACCCGTCCGGGCTAGATCCTTTTCACACATATTCTTCGGGAGGGCTTATATCA
Found at i:107763182 original size:16 final size:16
Alignment explanation
Indices: 107763161--107763193 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
107763151 TTCATGGCCA
107763161 ATGCCTCACCTAACAT
1 ATGCCTCACCTAACAT
107763177 ATGCCTCACCTAACAT
1 ATGCCTCACCTAACAT
107763193 A
1 A
107763194 CTCCATGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.06, T:0.24
Consensus pattern (16 bp):
ATGCCTCACCTAACAT
Found at i:107767256 original size:29 final size:28
Alignment explanation
Indices: 107767205--107767263 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
107767195 GATTTTTTGT
*
107767205 ATAACATACAAATGTGATAAAATCACCA
1 ATAACATACAAATGCGATAAAATCACCA
*
107767233 ATAACATATAATATGCGATAAAATCACCA
1 ATAACATACAA-ATGCGATAAAATCACCA
107767262 AT
1 AT
107767264 CCCCTCGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.24
Consensus pattern (28 bp):
ATAACATACAAATGCGATAAAATCACCA
Found at i:107768633 original size:28 final size:28
Alignment explanation
Indices: 107768596--107768655 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
107768586 TTAATTGACA
107768596 AGATTAATCAAGAAATTGAAGAAAAAAG
1 AGATTAATCAAGAAATTGAAGAAAAAAG
107768624 AGATTAATCAAGAAATTGAAGAAAAAAG
1 AGATTAATCAAGAAATTGAAGAAAAAAG
107768652 AGAT
1 AGAT
107768656 CTTACACAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.60, C:0.03, G:0.18, T:0.18
Consensus pattern (28 bp):
AGATTAATCAAGAAATTGAAGAAAAAAG
Found at i:107770613 original size:10 final size:10
Alignment explanation
Indices: 107770598--107770631 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
107770588 ATTTATTAAG
107770598 ATAAATATTA
1 ATAAATATTA
107770608 ATAAATATTA
1 ATAAATATTA
*
107770618 GATTAATATTA
1 -ATAAATATTA
107770629 ATA
1 ATA
107770632 TAAAATCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (10 bp):
ATAAATATTA
Found at i:107770620 original size:21 final size:21
Alignment explanation
Indices: 107770569--107770631 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
107770559 TAATCACTTT
*
107770569 AATATTAAATTAATA-TAATA
1 AATATTAGATTAATATTAATA
** *
107770589 TTTATTAAGATAAATATTAATA
1 AATATT-AGATTAATATTAATA
107770611 AATATTAGATTAATATTAATA
1 AATATTAGATTAATATTAATA
107770632 TAAAATCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 4 0.12
21 21 0.62
22 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (21 bp):
AATATTAGATTAATATTAATA
Found at i:107770622 original size:27 final size:27
Alignment explanation
Indices: 107770577--107770632 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
107770567 TTAATATTAA
*
107770577 ATTAATATAATATTTATTAAGATAAAT
1 ATTAATATAATATTGATTAAGATAAAT
* *
107770604 ATTAATA-AATATTAGATTAATATTAAT
1 ATTAATATAATATT-GATTAAGATAAAT
107770631 AT
1 AT
107770633 AAAATCTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (27 bp):
ATTAATATAATATTGATTAAGATAAAT
Found at i:107782667 original size:35 final size:33
Alignment explanation
Indices: 107782607--107782674 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 33
107782597 TTTGATTTAC
107782607 CAATTTAATTTAATTTCTTTAATTTTAT-TTTG
1 CAATTTAATTTAATTTCTTTAATTTTATATTTG
* *
107782639 CAATTATAATTCTTATTTCATTTTATTTTATATTTG
1 CAATT-TAATT-TAATTTC-TTTAATTTTATATTTG
107782675 TTTTTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 5 0.17
34 6 0.20
35 10 0.33
36 4 0.13
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (33 bp):
CAATTTAATTTAATTTCTTTAATTTTATATTTG
Found at i:107783210 original size:24 final size:24
Alignment explanation
Indices: 107783173--107783219 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
107783163 CTATTAAACT
107783173 ATATAATTCAAAATTGC-ATAAATA
1 ATATAATTCAAAATT-CAATAAATA
**
107783197 ATATAATTTTAAATTCAATAAAT
1 ATATAATTCAAAATTCAATAAAT
107783220 TTTAATATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (24 bp):
ATATAATTCAAAATTCAATAAATA
Found at i:107783222 original size:16 final size:18
Alignment explanation
Indices: 107783196--107783231 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
107783186 TTGCATAAAT
107783196 AATATAATTTTAA-ATTC
1 AATATAATTTTAATATTC
107783213 AATA-AATTTTAATATTC
1 AATATAATTTTAATATTC
107783230 AA
1 AA
107783232 ATTTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATAATTTTAATATTC
Found at i:107783428 original size:16 final size:16
Alignment explanation
Indices: 107783407--107783459 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
107783397 ATTATAATAT
107783407 AAATTTATATTATTAA
1 AAATTTATATTATTAA
*
107783423 AAATTTATATT-CTAA
1 AAATTTATATTATTAA
*
107783438 AAA-TAATTATTATT-A
1 AAATTTA-TATTATTAA
107783453 AAATTTA
1 AAATTTA
107783460 AATAAATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 2 0.07
15 14 0.47
16 14 0.47
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTTATATTATTAA
Found at i:107783440 original size:15 final size:16
Alignment explanation
Indices: 107783407--107783441 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
107783397 ATTATAATAT
*
107783407 AAATTTATATTATTAA
1 AAATTTATATTACTAA
107783423 AAATTTATATT-CTAA
1 AAATTTATATTACTAA
107783438 AAAT
1 AAAT
107783442 AATTATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATTTATATTACTAA
Found at i:107790269 original size:31 final size:31
Alignment explanation
Indices: 107790231--107790292 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
107790221 ATGTATTAGG
*
107790231 AAAATGATTATGATGTATTGTTTCAAAGCTA
1 AAAATGATTATGATGTAATGTTTCAAAGCTA
*
107790262 AAAATGATTATGTTGTAATGTTTCAAAGCTA
1 AAAATGATTATGATGTAATGTTTCAAAGCTA
107790293 TGTATGGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (31 bp):
AAAATGATTATGATGTAATGTTTCAAAGCTA
Found at i:107791952 original size:13 final size:13
Alignment explanation
Indices: 107791934--107791959 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107791924 ATGCAATGCT
107791934 ACATGCAAATATG
1 ACATGCAAATATG
107791947 ACATGCAAATATG
1 ACATGCAAATATG
107791960 CAACTAACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
ACATGCAAATATG
Found at i:107803411 original size:49 final size:49
Alignment explanation
Indices: 107803345--107803448 Score: 138
Period size: 49 Copynumber: 2.1 Consensus size: 49
107803335 ACGGGTAAAC
*
107803345 CACATGCCTGTGCCTATTTAACAGACTCTAAACACGGCCTA-AGCCACAT
1 CACACGCCTGTGCCTATTTAACAGACTCTAAACACGGCCTAGA-CCACAT
* * * * *
107803394 CACACGCCTGTGTCTATTTAACAGATTGTAAACATGGCCTAGACCACTT
1 CACACGCCTGTGCCTATTTAACAGACTCTAAACACGGCCTAGACCACAT
107803443 CACACG
1 CACACG
107803449 GGAATACCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
49 47 0.98
50 1 0.02
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (49 bp):
CACACGCCTGTGCCTATTTAACAGACTCTAAACACGGCCTAGACCACAT
Found at i:107813778 original size:25 final size:25
Alignment explanation
Indices: 107813767--107813818 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
107813757 ATCTAGGTTG
107813767 TTGTGGACAGATTGTCTAAATTGGC
1 TTGTGGACAGATTGTCTAAATTGGC
107813792 TTGTGGACAGATTGTCTAAATTGGC
1 TTGTGGACAGATTGTCTAAATTGGC
107813817 TT
1 TT
107813819 ATTTCATTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.27, T:0.38
Consensus pattern (25 bp):
TTGTGGACAGATTGTCTAAATTGGC
Found at i:107818066 original size:7 final size:7
Alignment explanation
Indices: 107818050--107818089 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
107818040 AGGGCGATAT
107818050 ACCCTAA
1 ACCCTAA
*
107818057 ACCTTAA
1 ACCCTAA
107818064 ACCCTAA
1 ACCCTAA
*
107818071 ATCCTAA
1 ACCCTAA
107818078 ACCCTAA
1 ACCCTAA
107818085 ACCCT
1 ACCCT
107818090 TTTGAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:107819125 original size:15 final size:15
Alignment explanation
Indices: 107819105--107819137 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
107819095 GAAATAATTT
*
107819105 AAATAATTGAAATAC
1 AAATAACTGAAATAC
107819120 AAATAACTGAAATAC
1 AAATAACTGAAATAC
107819135 AAA
1 AAA
107819138 CAACACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.09, G:0.06, T:0.21
Consensus pattern (15 bp):
AAATAACTGAAATAC
Found at i:107837451 original size:46 final size:44
Alignment explanation
Indices: 107837359--107837452 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
107837349 ATTACAACAT
* *
107837359 CATTCCATTCAACCAAATACAAGAATACTATTACAGGTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
***
107837403 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAA-TACT-ATTACAGCTCTATTC
107837449 CATT
1 CATT
107837453 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 21 0.49
45 4 0.09
46 18 0.42
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTC
Found at i:107837455 original size:16 final size:16
Alignment explanation
Indices: 107837434--107837488 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
107837424 TGAATTACTG
*
107837434 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
107837450 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* * *
107837466 ATTTCAGCTTTATTCT
1 ATTACAGCTCTATTCA
107837482 ATTACAG
1 ATTACAG
107837489 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:107838466 original size:30 final size:29
Alignment explanation
Indices: 107838432--107838497 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
107838422 ATATCAAAAT
107838432 TATACATAAACTAT-ATTTAATGTGCAATTG
1 TATACATAAACTATGATTT--TGTGCAATTG
* * *
107838462 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATAAACTATGATTTTGTGCAATTG
107838491 TATACAT
1 TATACAT
107838498 GAAATTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 16 0.50
30 12 0.38
31 4 0.12
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (29 bp):
TATACATAAACTATGATTTTGTGCAATTG
Found at i:107838487 original size:29 final size:30
Alignment explanation
Indices: 107838452--107838510 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
107838442 CTATATTTAA
107838452 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
107838481 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
107838511 GACCCAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:107839573 original size:47 final size:47
Alignment explanation
Indices: 107839495--107839684 Score: 222
Period size: 47 Copynumber: 4.0 Consensus size: 47
107839485 AAGGGAACCC
* * *
107839495 ATATCACAGTGTAATTTTTGGAGAAATAGCTATAAATAGTG-TGAACA
1 ATATCACAGTGCAACTTCTGGAGAAATAGCTATAAATAGTGCT-AACA
* * *
107839542 ATATTACAGTGCAACTTCTGGAGAAACAGCTATAAATCGTGCTAACA
1 ATATCACAGTGCAACTTCTGGAGAAATAGCTATAAATAGTGCTAACA
* *
107839589 ATATCACAGTGCAACTTCTGGAGAAATGGCTATAAATCA-TGCTAACT
1 ATATCACAGTGCAACTTCTGGAGAAATAGCTATAAAT-AGTGCTAACA
* ** * * *
107839636 ATATCACAGTGAAACTTCTATAGAAATGGCTATAAATCGTGCGAACA
1 ATATCACAGTGCAACTTCTGGAGAAATAGCTATAAATAGTGCTAACA
107839683 AT
1 AT
107839685 CTCATCTTTA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
47 122 0.99
48 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (47 bp):
ATATCACAGTGCAACTTCTGGAGAAATAGCTATAAATAGTGCTAACA
Found at i:107843303 original size:72 final size:72
Alignment explanation
Indices: 107843220--107843363 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
107843210 CTGAACCACT
107843220 CATCATTGACTCTAAAACGTTGAAACTCATTTAATGGTCCATCCAAATCACTAACCTTAACCAAC
1 CATCATTGACTCTAAAACGTTGAAACTCATTTAATGGTCCATCCAAATCACTAACCTTAACCAAC
107843285 CAACCTC
66 CAACCTC
*
107843292 CATCATTGACTCTAAAACGTTGAAACTCATTTAATGGTCCATCCGAATCACTAACCTTAACCAAC
1 CATCATTGACTCTAAAACGTTGAAACTCATTTAATGGTCCATCCAAATCACTAACCTTAACCAAC
107843357 CAACCTC
66 CAACCTC
107843364 AATTCTTCTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.35, C:0.31, G:0.08, T:0.26
Consensus pattern (72 bp):
CATCATTGACTCTAAAACGTTGAAACTCATTTAATGGTCCATCCAAATCACTAACCTTAACCAAC
CAACCTC
Found at i:107855208 original size:84 final size:84
Alignment explanation
Indices: 107855098--107855256 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
107855088 GAGTATATGT
* *** * * * * *
107855098 GGCTGTGTGGGTCATATGGTTTAGGCTGATTTGGGTGTGTGGGACCACACAGGCATGCTACACAG
1 GGCTGTGTGGGCCATATGGGCAAGGCTAATTTGGGCGCGTGGGACCACACAGGCAAGCGACACAG
107855163 GAATGTGGGCTGTGGGCCA
66 GAATGTGGGCTGTGGGCCA
* * *
107855182 GGCTGTGTGGGCCATATGGGCAAGGCTAATTTGGGCGCGTGGGCCCACACGGGCAAGCGACACGG
1 GGCTGTGTGGGCCATATGGGCAAGGCTAATTTGGGCGCGTGGGACCACACAGGCAAGCGACACAG
*
107855247 GCATGTGGGC
66 GAATGTGGGC
107855257 ACAAAATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 62 1.00
ACGTcount: A:0.18, C:0.20, G:0.41, T:0.21
Consensus pattern (84 bp):
GGCTGTGTGGGCCATATGGGCAAGGCTAATTTGGGCGCGTGGGACCACACAGGCAAGCGACACAG
GAATGTGGGCTGTGGGCCA
Found at i:107859646 original size:10 final size:10
Alignment explanation
Indices: 107859631--107859662 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
107859621 CGATAGCATT
107859631 CAATACAACA
1 CAATACAACA
107859641 CAATACAACA
1 CAATACAACA
107859651 CAATACAACA
1 CAATACAACA
107859661 CA
1 CA
107859663 TATCATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.59, C:0.31, G:0.00, T:0.09
Consensus pattern (10 bp):
CAATACAACA
Found at i:107860553 original size:26 final size:26
Alignment explanation
Indices: 107860517--107860626 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
107860507 TGATACAAAT
107860517 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
107860543 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
107860569 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
107860595 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
107860621 TGATAA
1 TGATAA
107860627 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:107862142 original size:26 final size:26
Alignment explanation
Indices: 107862113--107862165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
107862103 TTTACAATTT
107862113 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
107862139 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
107862165 T
1 T
107862166 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:107862659 original size:137 final size:137
Alignment explanation
Indices: 107862413--107862699 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
107862403 GAGTAGTCTC
107862413 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
107862478 TGTTATTTGAATAAGGGGCTAAGGCCCAGTTTATTTTAATCTGAAAAGGGCTCTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
107862543 ACTGTTA
131 ACTGTTA
107862550 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
107862615 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
107862680 ACTGTTA
131 ACTGTTA
**
107862687 CCTGAATGGGCTT
1 CCCAAATGGGCTT
107862700 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:107865836 original size:54 final size:54
Alignment explanation
Indices: 107865717--107865839 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
107865707 GTAACCCAAC
* * * ** * *
107865717 TTCGAATGTTACATGGGCTAGCACACAACCAGTGACACGACCGTGTGGCGTTAT
1 TTCGAAAGTTACACGAGCTAGCACACAACCAGCAACACGACCGTGTGGCATCAT
* ** *
107865771 ATC-AAATGTTACACGAGCTAGCACAGGACCAGCAACACGACCGTGTGGTATCAT
1 TTCGAAA-GTTACACGAGCTAGCACACAACCAGCAACACGACCGTGTGGCATCAT
107865825 TTCGAAAGTTACACG
1 TTCGAAAGTTACACG
107865840 GCCTGACACA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
53 2 0.04
54 50 0.91
55 3 0.05
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (54 bp):
TTCGAAAGTTACACGAGCTAGCACACAACCAGCAACACGACCGTGTGGCATCAT
Found at i:107866389 original size:23 final size:23
Alignment explanation
Indices: 107866359--107866407 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
107866349 GCTAGAAGTA
107866359 TGTGATTCATTTAAACTA-TAGGG
1 TGTGATTCATTTAAAC-AGTAGGG
107866382 TGTGATTCATTTAAACAGTAGGG
1 TGTGATTCATTTAAACAGTAGGG
107866405 TGT
1 TGT
107866408 TCTTGAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 1 0.04
23 24 0.96
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (23 bp):
TGTGATTCATTTAAACAGTAGGG
Found at i:107883805 original size:70 final size:70
Alignment explanation
Indices: 107883722--107883857 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
107883712 CACTGTCAAA
* * * * *
107883722 TACTCGATGTTTCGTACATTAAGTGCCATCGAATAGCCGAAGCTTTTATAATTCTGCACACTAAG
1 TACTCGATGTTTCGCACACTAAGTGCCATCGAATAGCCAAAGCTATTATAATTCCGCACACTAAG
107883787 TTCCT
66 TTCCT
*
107883792 TACTCGATGTTTCGCACACTAAGTGCCATCGCATAGCCAAAGCTATTATAATTCCGCACACTAAG
1 TACTCGATGTTTCGCACACTAAGTGCCATCGAATAGCCAAAGCTATTATAATTCCGCACACTAAG
107883857 T
66 T
107883858 GCTTTACCTA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (70 bp):
TACTCGATGTTTCGCACACTAAGTGCCATCGAATAGCCAAAGCTATTATAATTCCGCACACTAAG
TTCCT
Found at i:107883891 original size:41 final size:40
Alignment explanation
Indices: 107883803--107883941 Score: 111
Period size: 41 Copynumber: 3.4 Consensus size: 40
107883793 ACTCGATGTT
** * *
107883803 TCGCACACTAAGTGCCATCGCATAGCCAAAGCTAT-T-ATAA
1 TCGCACACTAAGTGCTGT-ACATAGCCGAAGCTATCTCA-AA
* * * * **
107883843 TTCCGCACACTAAGTGCTTTACCTAGCTGAAGCTATCTTAGTC
1 -T-CGCACACTAAGTGCTGTACATAGCCGAAGCTATCTCA-AA
* *
107883886 TCGCACACTAAGTGCCGTATATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
107883926 TCGCACACTAAGTGCT
1 TCGCACACTAAGTGCT
107883942 AAACATTGTC
Statistics
Matches: 77, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
40 15 0.19
41 44 0.57
42 17 0.22
43 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
Found at i:107896084 original size:26 final size:25
Alignment explanation
Indices: 107896034--107896098 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
107896024 TATCATTTCT
*
107896034 GCTCTTTTGAGCT-ATGATCAGTAA
1 GCTCTATTGAGCTGATGATCAGTAA
*
107896058 GCTCCTCTTGAGCTGATGGA-CAGTAA
1 GCT-CTATTGAGCTGAT-GATCAGTAA
107896084 GCTCTATTGAGCTGA
1 GCTCTATTGAGCTGA
107896099 AATGATAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 3 0.08
25 20 0.56
26 11 0.31
27 2 0.06
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (25 bp):
GCTCTATTGAGCTGATGATCAGTAA
Found at i:107896170 original size:24 final size:24
Alignment explanation
Indices: 107896104--107896171 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
107896094 GCTGAAATGA
** *
107896104 TAAGCTCCGACGAGTTGAAAACAG
1 TAAGCTCTTACGAGTTGATAACAG
*
107896128 TAAGCTCTTACGAGCTGATAACAG
1 TAAGCTCTTACGAGTTGATAACAG
107896152 TAAGCTCTTACGAGTTGATA
1 TAAGCTCTTACGAGTTGATA
107896172 TATTGCTAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAGCTCTTACGAGTTGATAACAG
Found at i:107901436 original size:14 final size:14
Alignment explanation
Indices: 107901385--107901428 Score: 88
Period size: 14 Copynumber: 3.1 Consensus size: 14
107901375 TACTTACGGT
107901385 CTTGTTAATATATG
1 CTTGTTAATATATG
107901399 CTTGTTAATATATG
1 CTTGTTAATATATG
107901413 CTTGTTAATATATG
1 CTTGTTAATATATG
107901427 CT
1 CT
107901429 ATGTAATAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (14 bp):
CTTGTTAATATATG
Found at i:107901999 original size:29 final size:30
Alignment explanation
Indices: 107901959--107902015 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
107901949 TGGTTTAATA
107901959 TGCAATTGTATACATG-AATTTTGATTTTG
1 TGCAATTGTATACATGAAATTTTGATTTTG
*
107901988 TGCAATTTTATACATGAAATTTTGATTT
1 TGCAATTGTATACATGAAATTTTGATTT
107902016 GATCCAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (30 bp):
TGCAATTGTATACATGAAATTTTGATTTTG
Found at i:107902024 original size:30 final size:29
Alignment explanation
Indices: 107901961--107902024 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
107901951 GTTTAATATG
*
107901961 CAATTGTATACATGAATTTTGATTTTGTG
1 CAATTGTATACATGAATTTTGATTTTGTC
*
107901990 CAATTTTATACATGAAATTTTGA-TTTGATC
1 CAATTGTATACATG-AATTTTGATTTTG-TC
107902020 CAATT
1 CAATT
107902025 CTTGTAAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (29 bp):
CAATTGTATACATGAATTTTGATTTTGTC
Found at i:107909874 original size:136 final size:137
Alignment explanation
Indices: 107909630--107909915 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
107909620 CATTGGGCCT
** * *
107909630 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
107909695 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
107909759 CATATGC
131 CATATGC
107909766 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
107909831 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
107909896 CATATGC
131 CATATGC
107909903 AAGCCCATTTGGG
1 AAGCCCATTTGGG
107909916 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:107911736 original size:26 final size:26
Alignment explanation
Indices: 107911698--107911781 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
107911688 CATGAAATTC
* *
107911698 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
107911724 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
107911750 TTATCATAGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
107911776 TTATCA
1 TTATCA
107911782 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:107913465 original size:14 final size:14
Alignment explanation
Indices: 107913446--107913472 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107913436 AAACAAAAAA
107913446 AAATCTTTTTATTT
1 AAATCTTTTTATTT
107913460 AAATCTTTTTATT
1 AAATCTTTTTATT
107913473 CGATAAGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (14 bp):
AAATCTTTTTATTT
Found at i:107919665 original size:18 final size:18
Alignment explanation
Indices: 107919642--107919679 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
107919632 CAATTTAAGG
107919642 TAGGTTGGAGGATTTAGC
1 TAGGTTGGAGGATTTAGC
107919660 TAGGTTGGAGGATTTAGC
1 TAGGTTGGAGGATTTAGC
107919678 TA
1 TA
107919680 AGGATAGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.37, T:0.34
Consensus pattern (18 bp):
TAGGTTGGAGGATTTAGC
Found at i:107924033 original size:23 final size:23
Alignment explanation
Indices: 107923999--107924046 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
107923989 TAAATTTATC
107923999 TACACATACCAATACATCCTCGA
1 TACACATACCAATACATCCTCGA
*
107924022 TACACATGCCAATACATCCTCGA
1 TACACATACCAATACATCCTCGA
107924045 TA
1 TA
107924047 TTTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.33, G:0.06, T:0.23
Consensus pattern (23 bp):
TACACATACCAATACATCCTCGA
Found at i:107932479 original size:41 final size:40
Alignment explanation
Indices: 107932301--107932479 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
107932291 GCTCGATTGT
* * * *
107932301 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
107932341 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
107932381 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCATAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
107932421 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
107932462 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
107932480 ATACCATTCG
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.77
41 26 0.22
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:107940492 original size:30 final size:30
Alignment explanation
Indices: 107940458--107940514 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
107940448 CAAGTCATGC
107940458 AAACTCAATTTAATGTTTAATCGAGCTTGA
1 AAACTCAATTTAATGTTTAATCGAGCTTGA
*
107940488 AAACTCAATTTAATGTTTAATTGAGCT
1 AAACTCAATTTAATGTTTAATCGAGCT
107940515 AACATACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (30 bp):
AAACTCAATTTAATGTTTAATCGAGCTTGA
Found at i:107951726 original size:34 final size:34
Alignment explanation
Indices: 107951657--107951726 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
107951647 CAGTGTAAAA
* **
107951657 CAGTCTGGGCCTAAGCCCATATCAGTCGCAATAT
1 CAGTATGGGCCTAAGCCCATATCAGTAACAATAT
* *
107951691 CAGTATGGGCCTTAGCCCCATA-CAGTAACAGTAT
1 CAGTATGGGCCTAAG-CCCATATCAGTAACAATAT
107951725 CA
1 CA
107951727 AACATGTGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 24 0.80
35 6 0.20
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (34 bp):
CAGTATGGGCCTAAGCCCATATCAGTAACAATAT
Found at i:107952433 original size:11 final size:11
Alignment explanation
Indices: 107952419--107952468 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
107952409 ACAAAATAAG
107952419 AAGAAAAGAAA
1 AAGAAAAGAAA
**
107952430 AAGAACTGAAA
1 AAGAAAAGAAA
* *
107952441 TAACAAAATAAA
1 -AAGAAAAGAAA
107952453 AAGAAAAGAAA
1 AAGAAAAGAAA
107952464 AAGAA
1 AAGAA
107952469 CTTAGGGTTC
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
11 23 0.77
12 7 0.23
ACGTcount: A:0.76, C:0.04, G:0.14, T:0.06
Consensus pattern (11 bp):
AAGAAAAGAAA
Found at i:107952446 original size:34 final size:34
Alignment explanation
Indices: 107952403--107952470 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
107952393 ATACATTACC
*
107952403 GAAATAACAAAATAAGAAGAAAAGAAAAAGAACT
1 GAAATAACAAAATAAAAAGAAAAGAAAAAGAACT
107952437 GAAATAACAAAATAAAAAGAAAAGAAAAAGAACT
1 GAAATAACAAAATAAAAAGAAAAGAAAAAGAACT
107952471 TAGGGTTCGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.72, C:0.06, G:0.13, T:0.09
Consensus pattern (34 bp):
GAAATAACAAAATAAAAAGAAAAGAAAAAGAACT
Found at i:107953142 original size:28 final size:28
Alignment explanation
Indices: 107953102--107953156 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
107953092 AAATTACATG
107953102 CTAAGTATATATGCTGGAATAAAATATT
1 CTAAGTATATATGCTGGAATAAAATATT
107953130 CTAAGTATATATGCTGGAATAAAATAT
1 CTAAGTATATATGCTGGAATAAAATAT
107953157 ATGAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.35
Consensus pattern (28 bp):
CTAAGTATATATGCTGGAATAAAATATT
Found at i:107956734 original size:17 final size:16
Alignment explanation
Indices: 107956714--107956758 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
107956704 GCTTCAGAAA
107956714 CAAATGAAAAGAAACCC
1 CAAATGAAAA-AAACCC
*
107956731 CAAATGACAAAAACCC
1 CAAATGAAAAAAACCC
*
107956747 GAAA-GAAAAAAA
1 CAAATGAAAAAAA
107956759 GTAGGGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.28
16 9 0.36
17 9 0.36
ACGTcount: A:0.64, C:0.20, G:0.11, T:0.04
Consensus pattern (16 bp):
CAAATGAAAAAAACCC
Found at i:107961083 original size:5 final size:6
Alignment explanation
Indices: 107961061--107961091 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
107961051 CATATCTTGT
107961061 TTTTCTC TTTTTC TTTTTC TTTTTC TTTTTC
1 TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC
107961092 AAATTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTC
Found at i:107962283 original size:34 final size:34
Alignment explanation
Indices: 107962242--107962310 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
107962232 CCGCATTGGT
107962242 ATAATATGGTGTGTAAGGCTGGATGGGTGTTTTA
1 ATAATATGGTGTGTAAGGCTGGATGGGTGTTTTA
*
107962276 ATAATATGGTGTGTAGGGCTGGATGGGTGTTTTA
1 ATAATATGGTGTGTAAGGCTGGATGGGTGTTTTA
107962310 A
1 A
107962311 ACCCCACATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.03, G:0.36, T:0.38
Consensus pattern (34 bp):
ATAATATGGTGTGTAAGGCTGGATGGGTGTTTTA
Found at i:107963676 original size:27 final size:26
Alignment explanation
Indices: 107963641--107963752 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
107963631 AGCATGGCTG
* *
107963641 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
107963667 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
107963695 CCAGAATAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
107963722 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
107963749 CCAG
1 CCAG
107963753 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:107963706 original size:54 final size:54
Alignment explanation
Indices: 107963641--107963752 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
107963631 AGCATGGCTG
* *
107963641 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
107963695 CCAGAATAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCGTGGCAGAGCCA
107963749 CCAG
1 CCAG
107963753 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:107965188 original size:25 final size:25
Alignment explanation
Indices: 107965160--107965213 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
107965150 AACTCTTGCT
*
107965160 CCTTGATTAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
*
107965185 CCTTTATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
107965210 CCTT
1 CCTT
107965214 ATCCCCTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.35, G:0.06, T:0.41
Consensus pattern (25 bp):
CCTTGATCAGCTCCTAAATCTTCTC
Found at i:107965222 original size:24 final size:25
Alignment explanation
Indices: 107965170--107965223 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
107965160 CCTTGATTAG
*
107965170 CTCCTAAATCTTCTCCCTTTATCAG
1 CTCCTAAATCTTCTCCCTTTATCAC
*
107965195 CTCCTAAATCTTCTCCC-TTATCCC
1 CTCCTAAATCTTCTCCCTTTATCAC
107965219 CTCCT
1 CTCCT
107965224 TACTCAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.17, C:0.43, G:0.02, T:0.39
Consensus pattern (25 bp):
CTCCTAAATCTTCTCCCTTTATCAC
Found at i:107971524 original size:27 final size:27
Alignment explanation
Indices: 107971494--107971597 Score: 113
Period size: 27 Copynumber: 3.8 Consensus size: 27
107971484 GGCTGCTAGA
* *
107971494 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
107971521 ACAGATAATCGTGGCAGAGCCACTAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
107971548 ACAGATATATGTGGTAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
* *
107971576 -TAGATAATTGTGGCATAGCCAC
1 ACAGATAA-TGTGGCAGAGCCAC
107971598 TAGGACGTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 48 0.74
28 16 0.25
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:107971553 original size:54 final size:54
Alignment explanation
Indices: 107971489--107971600 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
107971479 AGCATGGCTG
*
107971489 CTAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CTAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
** * * *
107971543 CTAGAACAGATATATGTGGTAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
1 CTAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
107971597 CTAG
1 CTAG
107971601 GACGTTCCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
CTAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:107974863 original size:12 final size:12
Alignment explanation
Indices: 107974846--107974877 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
107974836 ACCAAAATCA
107974846 AACCATAAGTTC
1 AACCATAAGTTC
107974858 AACCATAAGTTC
1 AACCATAAGTTC
107974870 AACCATAA
1 AACCATAA
107974878 TTAAGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.25, G:0.06, T:0.22
Consensus pattern (12 bp):
AACCATAAGTTC
Found at i:107976002 original size:9 final size:9
Alignment explanation
Indices: 107975988--107976013 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
107975978 GTCCCTAATT
107975988 CACAAAATA
1 CACAAAATA
107975997 CACAAAATA
1 CACAAAATA
107976006 CACAAAAT
1 CACAAAAT
107976014 TTCCTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
CACAAAATA
Found at i:107978748 original size:43 final size:42
Alignment explanation
Indices: 107978677--107978781 Score: 129
Period size: 43 Copynumber: 2.5 Consensus size: 42
107978667 CGGAAAGCTC
* * ** *
107978677 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACAATGCCAATGTCCCAGGCAAGGTCTTACATGAAATCAA
** *
107978719 ATATTGATGCCACTGTCCCAGGCAAGGTCTTACATGAAATCAA
1 ATA-CAATGCCAATGTCCCAGGCAAGGTCTTACATGAAATCAA
107978762 ATACAATGCCAATGTCCCAG
1 ATACAATGCCAATGTCCCAG
107978782 ACATAGTTAC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 17 0.33
43 34 0.67
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGGCAAGGTCTTACATGAAATCAA
Found at i:107979263 original size:9 final size:9
Alignment explanation
Indices: 107979249--107979274 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
107979239 GTCCCTAATT
107979249 CACAAAATA
1 CACAAAATA
107979258 CACAAAATA
1 CACAAAATA
107979267 CACAAAAT
1 CACAAAAT
107979275 TTCCTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
CACAAAATA
Found at i:107982304 original size:34 final size:34
Alignment explanation
Indices: 107982243--107982330 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
107982233 ACAGTGTTGG
*
107982243 ACAGTTTGGG-CTTAAGCCCATATCAGCAGAAATA
1 ACAGTGTGGGCCTTAA-CCCATATCAGCAGAAATA
* * *
107982277 TCAGTGTGGGCCTTAACCCACTA-CAGCAGCAGTA
1 ACAGTGTGGGCCTTAACCCA-TATCAGCAGAAATA
* *
107982311 ACAGTGTAGGCCTTAGCCCA
1 ACAGTGTGGGCCTTAACCCA
107982331 ATTCAGTACA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
34 38 0.84
35 7 0.16
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACAGTGTGGGCCTTAACCCATATCAGCAGAAATA
Found at i:107990341 original size:6 final size:6
Alignment explanation
Indices: 107990330--107990355 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
107990320 CTGATTTGCA
107990330 TATCTG TATCTG TATCTG TATCTG TA
1 TATCTG TATCTG TATCTG TATCTG TA
107990356 ATGGGCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (6 bp):
TATCTG
Found at i:107991464 original size:71 final size:71
Alignment explanation
Indices: 107991307--107991733 Score: 460
Period size: 71 Copynumber: 6.0 Consensus size: 71
107991297 ACAATGAGTA
* * * * * * *
107991307 TGCCTAGCACTGGTCGGTACAACCGATAATAAATGCG-CCTGCGTTGGTCAGTAGAACCAAAAAA
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991371 TATGTG
66 TATGTG
* * * * * *
107991377 TGCCCAGCACTGGTCGGTATAACTGACAATAATTGCGCCCTGTGCTGGTCGGTAAAACCAAAAAA
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991442 TATGTG
66 TATGTG
** * * * * *
107991448 TGCCCAATACTTGTCGGTATAACCAAAAACAAATGCACCCTGCGCTGGTCGGTAGAACCGACAAA
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991513 TATGTG
66 TATGTG
* **** * *
107991519 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCACCCTATTTTGGTCGGTGGAACCGACAAG
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991584 TATGTG
66 TATGTG
* ** * * * * * *
107991590 TGCCCAACACTGGTTAGTATAACTGACAATAAATGTGCCCTGCGCTAGTCGATGGAACTGACAAA
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991655 TATGTG
66 TATGTG
* * * * * * *
107991661 TGCCCAGCACTGTTCAGTATAACTGACAATAAATGCGCCCTGTGCTAGTTGGTAGAACTGACAAA
1 TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
107991726 TATGTG
66 TATGTG
107991732 TG
1 TG
107991734 AAATCATTTC
Statistics
Matches: 300, Mismatches: 56, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
70 32 0.11
71 268 0.89
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (71 bp):
TGCCCAGCACTGGTCGGTATAACCGACAATAAATGCGCCCTGCGCTGGTCGGTAGAACCGACAAA
TATGTG
Found at i:107991543 original size:36 final size:36
Alignment explanation
Indices: 107991368--107991689 Score: 170
Period size: 36 Copynumber: 9.1 Consensus size: 36
107991358 TAGAACCAAA
*
107991368 AAATATGTGTGCCCAGCACTGGTCGGTATAACTGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
* * ** * * *
107991404 -AATAAT-TGCGCCCTGTGCTGGTCGGTAAAACCAAA
1 AAAT-ATGTGTGCCCAGCACTGGTCGGTATAACCGAC
** * *
107991439 AAATATGTGTGCCCAATACTTGTCGGTATAACC-AA
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
* ** ** * * *
107991474 AAACAAATGCACCCTGCGCTGGTCGGTAGAACCGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
107991510 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
** ** *** **
107991546 -AATAAATGCACCCTA-TTTTGGTCGGTGGAACCGAC
1 AAATATGTGTGCCC-AGCACTGGTCGGTATAACCGAC
* * ** *
107991581 AAGTATGTGTGCCCAACACTGGTTAGTATAACTGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
** * * * * ** *
107991617 -AATAAATGTGCCCTGCGCTAGTCGATGGAACTGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
* * *
107991652 AAATATGTGTGCCCAGCACTGTTCAGTATAACTGAC
1 AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
107991688 AA
1 AA
107991690 TAAATGCGCC
Statistics
Matches: 200, Mismatches: 78, Indels: 16
0.68 0.27 0.05
Matches are distributed among these distances:
35 98 0.49
36 102 0.51
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (36 bp):
AAATATGTGTGCCCAGCACTGGTCGGTATAACCGAC
Found at i:107991627 original size:35 final size:34
Alignment explanation
Indices: 107991588--107991700 Score: 95
Period size: 35 Copynumber: 3.2 Consensus size: 34
107991578 GACAAGTATG
*
107991588 TGTGCCCAACACTGGTTAGTATAACTGACAATAAA
1 TGTGCCCAGCACT-GTTAGTATAACTGACAATAAA
* * * **
107991623 TGTGCCCTGCGCTAG-TCG-ATGGAACTGACAAATATG
1 TGTGCCCAGCACT-GTTAGTAT--AACTGAC-AATAAA
107991659 TGTGCCCAGCACTGTTCAGTATAACTGACAATAAA
1 TGTGCCCAGCACTGTT-AGTATAACTGACAATAAA
*
107991694 TGCGCCC
1 TGTGCCC
107991701 TGTGCTAGTT
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
33 2 0.03
34 2 0.03
35 29 0.49
36 23 0.39
37 1 0.02
38 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (34 bp):
TGTGCCCAGCACTGTTAGTATAACTGACAATAAA
Found at i:107991724 original size:35 final size:35
Alignment explanation
Indices: 107991610--107991724 Score: 106
Period size: 35 Copynumber: 3.3 Consensus size: 35
107991600 TGGTTAGTAT
* * *
107991610 AACTGACAATAAATGTGCCCTGCGCTAGTCGATGG
1 AACTGACAATAAATGTGCCCTGCGCTAGTTGGTAG
** * * * *
107991645 AACTGACAAATATGTGTGCCCAGCACT-GTTCAGTAT
1 AACTGAC-AATAAATGTGCCCTGCGCTAGTT-GGTAG
* *
107991681 AACTGACAATAAATGCGCCCTGTGCTAGTTGGTAG
1 AACTGACAATAAATGTGCCCTGCGCTAGTTGGTAG
107991716 AACTGACAA
1 AACTGACAA
107991725 ATATGTGTGA
Statistics
Matches: 60, Mismatches: 17, Indels: 6
0.72 0.20 0.07
Matches are distributed among these distances:
35 34 0.57
36 26 0.43
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (35 bp):
AACTGACAATAAATGTGCCCTGCGCTAGTTGGTAG
Found at i:107993221 original size:16 final size:15
Alignment explanation
Indices: 107993187--107993247 Score: 61
Period size: 16 Copynumber: 4.0 Consensus size: 15
107993177 AACTTGTGCT
*
107993187 ATTATAATA-TAAAA
1 ATTATATTATTAAAA
107993201 ATTATATTATTAAAA
1 ATTATATTATTAAAA
* *
107993216 ATTTATATTCTAAAAA
1 A-TTATATTATTAAAA
*
107993232 ATTATTATTATCAAAA
1 ATTA-TATTATTAAAA
107993248 CTTAAATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
14 8 0.21
15 9 0.23
16 22 0.56
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTATATTATTAAAA
Found at i:107995284 original size:32 final size:32
Alignment explanation
Indices: 107995245--107995330 Score: 118
Period size: 32 Copynumber: 2.7 Consensus size: 32
107995235 GATCGTGTAA
*
107995245 GGGCTGTGTGGGCCAAACGGGCAAGGCAATTC
1 GGGCTGTGTGGGCCACACGGGCAAGGCAATTC
* * *
107995277 GGGCTGTGTGGGCCACACAGGCATGGCAATTT
1 GGGCTGTGTGGGCCACACGGGCAAGGCAATTC
**
107995309 GGATTGTGTGGGCCACACGGGC
1 GGGCTGTGTGGGCCACACGGGC
107995331 GTGTGGGTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (32 bp):
GGGCTGTGTGGGCCACACGGGCAAGGCAATTC
Found at i:107998479 original size:20 final size:20
Alignment explanation
Indices: 107998454--107998531 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
107998444 GCTTGTATGA
*
107998454 GATTGCACTTCCGTGCCTCT
1 GATTGCACTTCAGTGCCTCT
* *
107998474 GATTGCACTTCGGTGCGTCT
1 GATTGCACTTCAGTGCCTCT
107998494 -ATTTGCACTTCAGTGCCTCT
1 GA-TTGCACTTCAGTGCCTCT
*
107998514 GCTTGCACTTCAGTGCCT
1 GATTGCACTTCAGTGCCT
107998532 TTGTTAGCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 1 0.02
20 50 0.98
ACGTcount: A:0.12, C:0.31, G:0.22, T:0.36
Consensus pattern (20 bp):
GATTGCACTTCAGTGCCTCT
Found at i:107999984 original size:16 final size:15
Alignment explanation
Indices: 107999963--108000010 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107999953 GATGTGAATA
107999963 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
107999979 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
107999994 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
108000010 A
1 A
108000011 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:107999986 original size:24 final size:24
Alignment explanation
Indices: 107999959--108000014 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
107999949 TAATGATGTG
*
107999959 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
107999983 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
108000007 AATAATAA
1 AATAATAA
108000015 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:107999993 original size:8 final size:8
Alignment explanation
Indices: 107999959--108000010 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
107999949 TAATGATGTG
*
107999959 AATAATAA
1 AATATTAA
107999967 AATATATAA
1 AATAT-TAA
107999976 AATA-TAA
1 AATATTAA
107999983 AATATTAA
1 AATATTAA
*
107999991 AATATCAA
1 AATATTAA
*
107999999 AATATTAG
1 AATATTAA
108000007 AATA
1 AATA
108000011 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:108000229 original size:22 final size:24
Alignment explanation
Indices: 108000166--108000230 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
108000156 CGTGATAATA
*
108000166 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
108000191 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
108000214 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
108000231 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:108000252 original size:2 final size:2
Alignment explanation
Indices: 108000245--108000318 Score: 55
Period size: 2 Copynumber: 37.5 Consensus size: 2
108000235 ACATGTAAAA
* * * *
108000245 AT AT AT AT AT AT AA AT A- AT AT A- AT AT -T AA AG AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
108000284 AT GAA AT AGT AT AA AT AT AT AT AT AT AT AT AT AT A
1 AT -AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT A
108000319 CGTAATATAG
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
1 3 0.05
2 50 0.89
3 3 0.05
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (2 bp):
AT
Found at i:108000257 original size:32 final size:31
Alignment explanation
Indices: 108000219--108000282 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 31
108000209 TATAGTTAAG
*
108000219 ATATATACATAAGATAACATGTAAAAATATAT
1 ATATATAAATAAGATAACAT-TAAAAATATAT
* * *
108000251 ATATATAAATAATATAATATTAAAGATATAT
1 ATATATAAATAAGATAACATTAAAAATATAT
108000282 A
1 A
108000283 CATGAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 11 0.39
32 17 0.61
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (31 bp):
ATATATAAATAAGATAACATTAAAAATATAT
Found at i:108000391 original size:23 final size:25
Alignment explanation
Indices: 108000348--108000393 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
108000338 TATACCTAAT
108000348 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
108000373 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
108000394 ACAAAAAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:108000974 original size:30 final size:30
Alignment explanation
Indices: 108000881--108001015 Score: 166
Period size: 30 Copynumber: 4.5 Consensus size: 30
108000871 TAGGTACAAG
*
108000881 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
* ** *
108000911 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
108000941 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
* *
108000971 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
*
108001001 TGGTGGTGGAAAAGG
1 TGGTGGTGGAGAAGG
108001016 CTAAGATTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 2 0.02
30 91 0.98
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
Found at i:108001814 original size:88 final size:85
Alignment explanation
Indices: 108001706--108002123 Score: 263
Period size: 88 Copynumber: 4.9 Consensus size: 85
108001696 AAAAACAGAC
* * *
108001706 ATTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 ATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
108001771 GAGTTGATTTTTTGAAACTTAA
65 GAGTTGATTTTTTGAAA-ATAA
* * * * * * *
108001793 CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGGTTCAACTCACCTCTAGCAAT
1 ATT-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
* *
108001857 ATTAGTTGA-TTTTTGAAAAACAGAA
63 ATGAGTTGATTTTTTG--AAA-ATAA
** * * * ** *** *
108001882 ATTAAAAGACTCA-ACT-CAACT--CTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAATA
1 ATTAAAAG-CAGATATTGAAAATACCTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATA
108001942 TGAGTTGAATTTTTTG---A-AA
64 TGAGTTG-ATTTTTTGAAAATAA
* * * * *
108001961 A--AAAA-CAGAAATTGAAAATAGCTCAGTACGTGAGCCAAGACTCAACTCACTTCTCGCAATAT
1 ATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
108002023 GAGTTGA-TTTTTGAAAATAGA
65 GAGTTGATTTTTTGAAAATA-A
* * * * * *
108002044 ATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 AT-T-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
*
108002109 GTGAGTTGATTTTTT
63 ATGAGTTGATTTTTT
108002124 TTGAAAAATA
Statistics
Matches: 250, Mismatches: 53, Indels: 54
0.70 0.15 0.15
Matches are distributed among these distances:
75 2 0.01
76 2 0.01
77 7 0.03
78 6 0.02
79 7 0.03
80 32 0.13
81 3 0.01
82 1 0.00
83 4 0.02
84 29 0.12
85 5 0.02
86 6 0.02
87 18 0.07
88 113 0.45
89 15 0.06
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (85 bp):
ATTAAAAGCAGATATTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTGAAAATAA
Found at i:108001913 original size:30 final size:30
Alignment explanation
Indices: 108001877--108001938 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
108001867 TTTTGAAAAA
108001877 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
108001907 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
108001937 CA
1 CA
108001939 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:108002178 original size:80 final size:78
Alignment explanation
Indices: 108002047--108002544 Score: 280
Period size: 80 Copynumber: 6.3 Consensus size: 78
108002037 AAATAGAATC
** * * * *
108002047 TGAAAAACAGATTTTG-AAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATG
1 TGAAAAACAGAAATTGAAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
108002110 TGAGTTGATTTTTTT
65 TGAGTTGA-TTTTTT
* * * * *
108002125 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTG-AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
108002190 TGAGTTGATTTTTT
65 TGAGTTGATTTTTT
* * * *
108002204 TGAAAGACAGAAATTG-AAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
108002267 TGAGTTGATTTTTTTTT
65 TGAGTTGA---TTTTTT
** * ** ** * * *
108002284 TGAAAGGCAGAATTTGAAAAACGGAAATTGAAAATACCTCGGTGTG---TGA-CCTGAGGCTCAA
1 TGAAAAACAGAAATTG---AA---AAA-T--ACCT-CAGC-GTGTGACCTGAGGCTCA-ACTC-A
* * * *
108002345 CTCGCCTCTCACA-AT-ACG-AGTTGATTTTTT
53 C-C-TCTCGCA-ATATGA-GTTGAT--TTTT-T
* *
108002375 TG-ACAACAGAAATTG-AAATTACCTCAGCGTGT--CCTG-GGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
108002435 GAGTTGA--TTTT
66 GAGTTGATTTTTT
* *
108002446 TGAAAAACAGAAATTTAAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTAGCAATAT
1 TGAAAAACAGAAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
108002509 GAGTTGATTTTTT
66 GAGTTGATTTTTT
* ** *
108002522 TTACGAACAGAAATTGAAGAATA
1 TGAAAAACAGAAATTGAAAAATA
108002545 GAAATTGAAA
Statistics
Matches: 320, Mismatches: 60, Indels: 82
0.69 0.13 0.18
Matches are distributed among these distances:
71 3 0.01
72 14 0.04
73 20 0.06
74 31 0.10
75 8 0.03
76 25 0.08
77 49 0.15
78 20 0.06
79 26 0.08
80 68 0.21
81 1 0.00
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 3 0.01
88 5 0.02
89 4 0.01
90 17 0.05
91 8 0.03
92 12 0.04
93 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (78 bp):
TGAAAAACAGAAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTT
Found at i:108002255 original size:77 final size:79
Alignment explanation
Indices: 108002086--108002774 Score: 333
Period size: 73 Copynumber: 8.7 Consensus size: 79
108002076 ATGTGACCCG
* * * *
108002086 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTTGAAAAATATAAATTGAAAAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTG-AAAAATACC
* * * *
108002151 TCAGTGTGTGATCTGA
64 TCAGCGCGTGAGCTCA
* *
108002167 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
108002230 AGCGCGTGAGC-CA
66 AGCGCGTGAGCTCA
** *
108002243 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAATTTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAACAGAAATTG---AA---
** ** * * *
108002308 AAATTGAAAATACCTCGGTGTGTGAC-CTG
57 AAA-T--ACCT-CAGC-GCGTGAG-CTC-A
* * * * *
108002337 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
* *
108002400 A--GCGTG-TC-CT
66 AGCGCGTGAGCTCA
* *
108002410 GGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
** *
108002473 A--GCGTGTCCT-G
66 AGCGCGTGAGCTCA
* * **
108002484 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT---G-A-A-AAA
*** ** * * ** *
108002549 TTGAAAAAACCTCAGCATGTGAGCCG
60 -T---ACCTCAGC-GCGTGAG-CTCA
* * *
108002575 AGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
* * *
108002637 A--GCGTG-TCCCG
66 AGCGCGTGAGCTCA
* * * * * *
108002648 AGGCTCAACTCACCTCTCACAATATGAG-TCA-ATTTTTGACAAATAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
* ** *
108002710 A--ACGTGTCCT-G
66 AGCGCGTGAGCTCA
108002721 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT-AAAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
108002775 CCAGAAATTG
Statistics
Matches: 488, Mismatches: 77, Indels: 95
0.74 0.12 0.14
Matches are distributed among these distances:
71 18 0.04
72 19 0.04
73 137 0.28
74 36 0.07
75 4 0.01
76 22 0.05
77 47 0.10
78 2 0.00
79 20 0.04
80 51 0.10
81 3 0.01
82 6 0.01
83 4 0.01
84 1 0.00
86 4 0.01
87 3 0.01
88 1 0.00
89 22 0.05
90 12 0.02
91 40 0.08
92 5 0.01
93 2 0.00
94 29 0.06
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
AGCGCGTGAGCTCA
Found at i:108002366 original size:94 final size:94
Alignment explanation
Indices: 108002202--108002375 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
108002192 AGTTGATTTT
* * *
108002202 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATA
*
108002267 TGAGTTGATTTTTTTTTTGAAAGGCAGAA
66 CGAGTTGATTTTTTTTTTGAAAGGCAGAA
* * * * * *
108002296 TTTGAAAAACGGAAATTGAAAATACCTCGGTGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAAT
108002360 ACGAGTTGATTTTTTT
65 ACGAGTTGATTTTTTT
108002376 GACAACAGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (94 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATA
CGAGTTGATTTTTTTTTTGAAAGGCAGAA
Found at i:108002427 original size:73 final size:74
Alignment explanation
Indices: 108002296--108002773 Score: 384
Period size: 73 Copynumber: 6.3 Consensus size: 74
108002286 AAAGGCAGAA
* * * * * *
108002296 TTTGAAAAACGGAAATTGAAAATACCTCGGTGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCACAATA
*
108002361 CGAGTTGATTTT
64 TGAGTTGA-TTT
*
108002373 TTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTG-GGCTCAACTCACCTCTCGCAATATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
108002436 AGTTGA-TT
66 AGTTGATTT
* * *
108002444 TTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-AGCAATA
1 TTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATA
108002508 TGAGTTGATTTT
64 TGAGTTGA-TTT
* * * ** * * * * * *
108002520 TTTTACGAACAGAAATTGAAGAATAGAAATTGAAAAAACCTCAG-CATGTGAGC-CGAGGCTCAA
1 TTTGACAAACAGAAATTG-A-AAT--TACCT----CAGCGT--GTCCTGAG-GCTC-A-ACTC--
* *
108002583 CTCACCTCTCGCAATATGAGTT-AATT
51 ---ACCTCTCACAATATGAGTTGATTT
*
108002609 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
* *
108002674 AG-TCAATT
66 AGTTGATTT
* * *
108002682 TTTGACAAATAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
108002747 AGTTGA--T
66 AGTTGATTT
*
108002754 TTT-AAAAACAGAAATTGAAA
1 TTTGACAAACAGAAATTGAAA
108002774 ACCAGAAATT
Statistics
Matches: 324, Mismatches: 48, Indels: 64
0.74 0.11 0.15
Matches are distributed among these distances:
71 22 0.07
72 13 0.04
73 133 0.41
74 35 0.11
75 2 0.01
76 39 0.12
77 7 0.02
78 3 0.01
79 6 0.02
80 4 0.01
81 3 0.01
83 3 0.01
84 5 0.02
85 6 0.02
86 3 0.01
87 3 0.01
88 1 0.00
89 18 0.06
90 1 0.00
91 17 0.05
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (74 bp):
TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
AGTTGATTT
Found at i:108002599 original size:91 final size:88
Alignment explanation
Indices: 108002445--108002629 Score: 239
Period size: 91 Copynumber: 2.1 Consensus size: 88
108002435 GAGTTGATTT
* *
108002445 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATG
1 TTGAAAAACAGAAATTGAAAAATACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATG
* * *
108002510 AGTTGATTTTTTTTACGAACAGAAA
66 AGTT-A-ATTTTTGACAAACAGAAA
* * *
108002535 TTGAAGAATAGAAATTGAAAAA-ACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTGAAAAATACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTAGCAAT
108002598 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
108002624 TTGAAA
1 TTGAAA
108002630 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
89 28 0.34
90 20 0.24
91 33 0.40
92 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTGAAAAATACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:108002657 original size:238 final size:237
Alignment explanation
Indices: 108001709--108002932 Score: 1154
Period size: 252 Copynumber: 5.1 Consensus size: 237
108001699 AACAGACATT
*
108001709 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG--CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * ** * *
108001774 TTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTC-GATATGTGA-CTGAAGG
64 TTGATTTTTTAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAG-CATGTGAGCCG-AGG
* * * * * * *
108001837 TTCAACTCACCTCTAGCAATATTAGTTG--ATTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
127 CTCAACTCACCTCTCGCAATATGAGTTGATATTTTTGACAAACAGAAATT-GAA-A-TTACCTCA
* * * *
108001900 AC-TCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTG
189 GCGTGTC-C------T--GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTG
* * *
108001958 AAAAAAAACAGAAATTGAAAATAGCTCAGTACGTGAGCCAAGACTCAACTCACTTCTCGCAATAT
1 ---AAAAACAGAAATTGAAAATACCTCAG--CGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* * ** *
108002023 GAGTTGATTTTTGAAAATAG-AATCTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCG
61 GAGTTGATTTTTTAAAACAGAAAT-TGAAAAACAGAAATTGAAAATACCTCAG-CATGTGAGCCG
* * * * * * *
108002086 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTTGAAAAATATAAATTGAAAAAATACC
124 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTTTGACAAACAGAAATTG--AAATTACC
* * *
108002151 TCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
186 TCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
* *
108002206 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCA--GCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
108002271 TTGATTTTTTTTTTGAAAGGCAGAATTTGAAAAACGGAAATTGAAAATACCTCGGTGTGTGA-CC
64 TTGA----TTTTTT-AAA-ACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCC
* * * *
108002335 TGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC-AACAGAAATTGAAATTACCT
123 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTTGACAAACAGAAATTGAAATTACCT
108002399 CAGCGTGTCCTG-GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
187 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * *
108002448 AAAAACAGAAATTTAAAAATACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTAGCAATATGAG
1 AAAAACAGAAA-TTGAAAATACCTCAGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
108002512 TTGATTTTTTTTACGAACAGAAATTGAAGAATAGAAATTGAAAAAACCTCAGCATGTGAGCCGAG
64 TTGA--TTTTTTA-AAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAG
108002577 GCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGC
126 GCTCAACTCACCTCTCGCAATATGAGTTGATATTTTTGACAAACAGAAATTGAAATTACCTCAGC
* * * *
108002640 GTGTCCCGAGGCTCAACTCACCTCTCACAATATGAG-TCAATTTTTG
191 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * * * *
108002686 ACAAATAGAAATTGAAATTACCTCAACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
108002750 TGA-TTTTAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTC
65 TGATTTTTTAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTC
* * * ** * * **
108002814 AACTCACCTCTTGCAATATGAGCT-A-ATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGT
130 AACTCACCTCTCGCAATATGAGTTGATATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
108002877 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
195 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
*
108002921 AAAATCAGAAAT
1 AAAAACAGAAAT
108002933 AAAAACATCA
Statistics
Matches: 835, Mismatches: 106, Indels: 79
0.82 0.10 0.08
Matches are distributed among these distances:
233 132 0.16
234 7 0.01
235 15 0.02
236 8 0.01
237 86 0.10
238 104 0.12
239 11 0.01
240 2 0.00
241 36 0.04
242 16 0.02
243 12 0.01
244 30 0.04
245 66 0.08
247 17 0.02
248 38 0.05
249 14 0.02
250 15 0.02
251 60 0.07
252 136 0.16
253 2 0.00
254 5 0.01
255 20 0.02
256 3 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (237 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
Found at i:108002779 original size:14 final size:14
Alignment explanation
Indices: 108002757--108002788 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
108002747 AGTTGATTTT
108002757 AAAAACAGAAATTG
1 AAAAACAGAAATTG
*
108002771 AAAACCAGAAATTG
1 AAAAACAGAAATTG
108002785 AAAA
1 AAAA
108002789 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:108002834 original size:160 final size:158
Alignment explanation
Indices: 108002610--108002916 Score: 438
Period size: 160 Copynumber: 1.9 Consensus size: 158
108002600 GAGTTAATTT
* *
108002610 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCACAATATGA
* * **
108002675 G-TCAATTTTTGACAAATAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
66 GCT-AATTTTTGACAAACAGAAATTAAAACCACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
108002739 GCAATATGAGTTGATTTTAAAAACAGAAA
130 GCAATATGAGTTGATTTTAAAAACAGAAA
* **
108002768 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCACAATA
* ** * *
108002832 TGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
63 TGAGCTAATTTTTGACAAACAGAAATTAAAACCACCTCAACGTGTCCTGAGGCTCAACTCACCTC
108002897 TCGCAATATGAGTTGATTTT
128 TCGCAATATGAGTTGATTTT
108002917 TTTGAAAATC
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
157 3 0.02
158 29 0.22
160 98 0.75
161 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (158 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCACAATATGA
GCTAATTTTTGACAAACAGAAATTAAAACCACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTAAAAACAGAAA
Found at i:108011264 original size:12 final size:12
Alignment explanation
Indices: 108011244--108011279 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
108011234 TGGGATATGC
*
108011244 AATGTATGAATG
1 AATGCATGAATG
108011256 AATGCATGAATG
1 AATGCATGAATG
108011268 AATGCATGAATG
1 AATGCATGAATG
108011280 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:108013674 original size:3 final size:3
Alignment explanation
Indices: 108013656--108013701 Score: 67
Period size: 3 Copynumber: 15.0 Consensus size: 3
108013646 GTATATGCAT
108013656 ATA ATA A-A ATA TATA ATA ATA TATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
108013702 TGAAAATACA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.05
3 32 0.80
4 6 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:108013679 original size:22 final size:22
Alignment explanation
Indices: 108013654--108013698 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
108013644 ATGTATATGC
108013654 ATATAATAA-AATATATAATAAT
1 ATATAATAATAATA-ATAATAAT
108013676 ATATAATAATAATAATAATAAT
1 ATATAATAATAATAATAATAAT
108013698 A
1 A
108013699 ATATGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATAATAATAATAATAATAAT
Found at i:108014216 original size:20 final size:22
Alignment explanation
Indices: 108014167--108014213 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
108014157 GAGAAAGAAA
*
108014167 AAAAAGAGAGAGGAGAAGAGAG
1 AAAAAGGGAGAGGAGAAGAGAG
*
108014189 AAAAAGGGAGAGGAGAAGGGAG
1 AAAAAGGGAGAGGAGAAGAGAG
108014211 AAA
1 AAA
108014214 GGGGGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (22 bp):
AAAAAGGGAGAGGAGAAGAGAG
Found at i:108014353 original size:15 final size:15
Alignment explanation
Indices: 108014333--108014366 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
108014323 AGATTTTTTC
*
108014333 TTTTTTT-TTTTATA
1 TTTTTTTGTATTATA
108014347 TTTTTTTGTATTATA
1 TTTTTTTGTATTATA
108014362 TTTTT
1 TTTTT
108014367 GTATAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTTTGTATTATA
Found at i:108018180 original size:19 final size:20
Alignment explanation
Indices: 108018156--108018196 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
108018146 GAATTTAGGC
*
108018156 AAATATT-AAGTAAAAATTG
1 AAATATTCAACTAAAAATTG
*
108018175 AAATATTCAACTTAAAATTG
1 AAATATTCAACTAAAAATTG
108018195 AA
1 AA
108018197 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATTCAACTAAAAATTG
Found at i:108025970 original size:50 final size:51
Alignment explanation
Indices: 108025893--108026021 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
108025883 GACCATGGCA
* *
108025893 ACAAGTGATAAGTGATAGCTCCGGCTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
108025944 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* * *
108025994 ACGAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
108026022 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:108026035 original size:31 final size:31
Alignment explanation
Indices: 108025997--108026065 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
108025987 ACAAATGACG
*
108025997 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
*
108026028 AGTGAAAAGTGGTAGCTTCTGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
108026059 AGTGAAA
1 AGTGAAA
108026066 GGCTACCTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
Found at i:108026072 original size:19 final size:19
Alignment explanation
Indices: 108026048--108026084 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
108026038 GGTAGCTTCT
108026048 GCTACCTAATCAGTGAAAG
1 GCTACCTAATCAGTGAAAG
*
108026067 GCTACCTGATCAGTGAAA
1 GCTACCTAATCAGTGAAA
108026085 AATGGTAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (19 bp):
GCTACCTAATCAGTGAAAG
Found at i:108026091 original size:50 final size:50
Alignment explanation
Indices: 108026016--108026114 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
108026006 TGGTAGCTTC
* * *
108026016 GGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTAATCAGTGAAA
1 GGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTAATCAGTGAAA
*
108026066 GGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAA
1 GGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTAATCAGTGAA
108026115 TAGTGGTAGC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (50 bp):
GGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTAATCAGTGAAA
Found at i:108026104 original size:31 final size:31
Alignment explanation
Indices: 108026066--108026133 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
108026056 ATCAGTGAAA
108026066 GGCTACCTGATCAGTGAAAAATGGTAGCTCC
1 GGCTACCTGATCAGTGAAAAATGGTAGCTCC
* * *
108026097 GGCTACCTGATCAGTGAATAGTGGTAGCTTC
1 GGCTACCTGATCAGTGAAAAATGGTAGCTCC
108026128 GGCTAC
1 GGCTAC
108026134 AAGTGACAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (31 bp):
GGCTACCTGATCAGTGAAAAATGGTAGCTCC
Found at i:108026306 original size:49 final size:47
Alignment explanation
Indices: 108026155--108026373 Score: 222
Period size: 47 Copynumber: 4.7 Consensus size: 47
108026145 GATTTCCGTA
* * * * *
108026155 TAAGACCATATCTGGGATATGGCATCA-GTGTGATATATG-TTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATT-C-GTG
* * * * *
108026202 TAAGATCATATCTGGGATATGGCATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
108026248 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATT-CGTG
*
108026297 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATTCGTG
108026339 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCA-TATGTGA
108026374 AGATGTGTAA
Statistics
Matches: 156, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
41 1 0.01
42 35 0.22
44 1 0.01
45 1 0.01
46 26 0.17
47 38 0.24
48 16 0.10
49 38 0.24
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
Found at i:108026340 original size:42 final size:43
Alignment explanation
Indices: 108026245--108026408 Score: 190
Period size: 42 Copynumber: 3.7 Consensus size: 43
108026235 TATGTGATTC
*
108026245 GTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
108026292 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
108026336 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
108026378 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
108026409 GAAAACGAAG
Statistics
Matches: 105, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.61
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 30 0.29
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:108026362 original size:91 final size:92
Alignment explanation
Indices: 108026155--108026373 Score: 259
Period size: 91 Copynumber: 2.4 Consensus size: 92
108026145 GATTTCCGTA
* * * * *
108026155 TAAGACCATATCTGGGATATGGCATCA-GTGTGATATATGTTACTGTATAAGATCATATCTGGGA
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATATGTTACTGTATAAGACCATAGCTGGGA
*
108026219 TATGGCATCAGTGAGATATGTGATTCGTG
66 TATGGCATCA--GAGATATGTAATTCGTG
* *
108026248 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTGTAAGACCATAGCTGG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATATG-TTACTGTATAAGACCATAGCTGG
* *
108026312 GCTATGGCATC-GATATATG-AATAT-GTG
64 GATATGGCATCAGAGATATGTAAT-TCGTG
108026339 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCA-TATGTGA
108026374 AGATGTGTAA
Statistics
Matches: 111, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
90 1 0.01
91 38 0.34
92 8 0.07
93 24 0.22
94 1 0.01
95 35 0.32
96 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (92 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATATGTTACTGTATAAGACCATAGCTGGGA
TATGGCATCAGAGATATGTAATTCGTG
Found at i:108027792 original size:19 final size:20
Alignment explanation
Indices: 108027703--108027795 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
108027693 GATGTGTAAG
*
108027703 AGAGGCACTGAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAT
* * ** *
108027723 AGAGACACGGTTGTGC-GAT
1 AGAGGCACCGAAGTGCAAAT
108027742 CAGAGGCACCGAAGTGCAAAT
1 -AGAGGCACCGAAGTGCAAAT
* *
108027763 AGAGACACCGAAGTGTAACA-
1 AGAGGCACCGAAGTGCAA-AT
108027783 A-AGGCACCGAAGT
1 AGAGGCACCGAAGT
108027796 ACAATCCTAT
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
19 13 0.23
20 41 0.72
21 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.30, T:0.13
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAT
Found at i:108039060 original size:26 final size:26
Alignment explanation
Indices: 108039031--108039112 Score: 98
Period size: 26 Copynumber: 3.3 Consensus size: 26
108039021 CAATGATCGA
*
108039031 TAAGCTTCTCCTAAGCTGATAAACAG
1 TAAGCTTCTCCTAAGCTGATAAACGG
* *
108039057 TAAGCTCCTCCTAAGCTGATAGACGG
1 TAAGCTTCTCCTAAGCTGATAAACGG
**
108039083 TAAGC-TCTATTAAGCT-A-AAACGG
1 TAAGCTTCTCCTAAGCTGATAAACGG
108039106 TAAGCTT
1 TAAGCTT
108039113 TGACGAGCTG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 10 0.21
24 2 0.04
25 8 0.17
26 28 0.58
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCTTCTCCTAAGCTGATAAACGG
Found at i:108039121 original size:23 final size:23
Alignment explanation
Indices: 108039095--108039158 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
108039085 AGCTCTATTA
* *
108039095 AGCTAAAACGGTAAGCTTTGACG
1 AGCTGAAACGGTAAGCTCTGACG
* *
108039118 AGCTGAAACAGTAAGCTCTGATG
1 AGCTGAAACGGTAAGCTCTGACG
*
108039141 AGCTGAAATGGTAAGCTC
1 AGCTGAAACGGTAAGCTC
108039159 ATACAAGCTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (23 bp):
AGCTGAAACGGTAAGCTCTGACG
Found at i:108041718 original size:63 final size:63
Alignment explanation
Indices: 108041615--108041819 Score: 270
Period size: 63 Copynumber: 3.3 Consensus size: 63
108041605 CCTGTGTGTC
* * ** * *
108041615 TCACATGACCTA-ACATACGCCCCTGTCTCTGGCTCGTGTGGTCCTTAAAGGCAAACAGTGAG
1 TCACACGACCTAGACACACGCCTGTGTCTCTGGCCCGTGTGGTCCTTAATGGCAAACAGTGAG
* * * *
108041677 TCACACGACCTAGACACACGCTTGTGTCTCTGGCCCATGTGGTCCTTAATGGAAAATAGTGAG
1 TCACACGACCTAGACACACGCCTGTGTCTCTGGCCCGTGTGGTCCTTAATGGCAAACAGTGAG
* * *
108041740 TCACACGACCTAGACACATGCCTGTGTCTCTAGCCCGTATGGTCCTTAATGGCAAACAGTGAG
1 TCACACGACCTAGACACACGCCTGTGTCTCTGGCCCGTGTGGTCCTTAATGGCAAACAGTGAG
*
108041803 TCACACGGCCTAG-CACA
1 TCACACGACCTAGACACA
108041820 AAGTCGTGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
62 15 0.12
63 109 0.88
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (63 bp):
TCACACGACCTAGACACACGCCTGTGTCTCTGGCCCGTGTGGTCCTTAATGGCAAACAGTGAG
Found at i:108045209 original size:16 final size:16
Alignment explanation
Indices: 108045190--108045225 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
108045180 AAGAAAAAGA
108045190 AAAATTAAAAACTAAC
1 AAAATTAAAAACTAAC
108045206 AAAATTAAAAACTAAC
1 AAAATTAAAAACTAAC
108045222 AAAA
1 AAAA
108045226 CAATTTGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAATTAAAAACTAAC
Found at i:108047877 original size:37 final size:36
Alignment explanation
Indices: 108047791--108047925 Score: 103
Period size: 37 Copynumber: 3.6 Consensus size: 36
108047781 GATACGTTCT
* * *
108047791 ACTGAGCCAAATCTTACTGTTATACTGAATGAAGCTCA
1 ACTGAG-CAAATC-TACTGTTATACTGAATGGAGTTTA
* * *
108047829 A-TCAAGAAAATCATACTGTTATACTAAATGGAGTTTA
1 ACT-GAGCAAATC-TACTGTTATACTGAATGGAGTTTA
* *
108047866 ACTGAGCAAATCCTACTGTTCTACTGACT-GATGTTTA
1 ACTGAGCAAAT-CTACTGTTATACTGAATGGA-GTTTA
* *
108047903 ATTGATCAAATTCTACTGTTATA
1 ACTGAGCAAA-TCTACTGTTATA
108047926 TTGAGTGAAG
Statistics
Matches: 77, Mismatches: 15, Indels: 11
0.75 0.15 0.11
Matches are distributed among these distances:
36 2 0.03
37 69 0.90
38 6 0.08
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (36 bp):
ACTGAGCAAATCTACTGTTATACTGAATGGAGTTTA
Found at i:108051953 original size:56 final size:54
Alignment explanation
Indices: 108051859--108051968 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 54
108051849 TATGAAAAAA
108051859 AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ***
108051913 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA-ATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
108051969 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
54 8 0.17
55 7 0.15
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (54 bp):
AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Done.