Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 377 of 444
Found at i:109572679 original size:26 final size:26
Alignment explanation
Indices: 109572630--109572679 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
109572620 AATTATATGT
*
109572630 TTTTTATTTTTATTTTTAGTATTAAG
1 TTTTTATTTTTATTTTTAGAATTAAG
109572656 TTTTTATTTTTATTTATTA-AATTA
1 TTTTTATTTTTATTT-TTAGAATTA
109572680 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTTTATTTTTATTTTTAGAATTAAG
Found at i:109572719 original size:18 final size:18
Alignment explanation
Indices: 109572696--109572733 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
109572686 ATTTTTATGA
109572696 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
109572714 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
109572732 TT
1 TT
109572734 AATATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:109572733 original size:13 final size:13
Alignment explanation
Indices: 109572695--109572719 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109572685 AATTTTTATG
109572695 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
109572708 ATTGGGTTGGGT
1 ATTGGGTTGGGT
109572720 TGGGTAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:109573112 original size:2 final size:2
Alignment explanation
Indices: 109573105--109573130 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
109573095 GTATTTTGTT
109573105 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
109573131 CAAATCTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109574992 original size:2 final size:2
Alignment explanation
Indices: 109574985--109575010 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
109574975 TACAATATTC
109574985 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
109575011 TTAAATTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:109576026 original size:30 final size:31
Alignment explanation
Indices: 109575967--109576030 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
109575957 ACTTAACAAG
109575967 CAAATGCCTCTAAAATAATTAAAAAAATTAA
1 CAAATGCCTCTAAAATAATTAAAAAAATTAA
* *
109575998 CAAATGCCTTTAAAATAA-TAAGAAAATTAA
1 CAAATGCCTCTAAAATAATTAAAAAAATTAA
109576028 CAA
1 CAA
109576031 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 14 0.45
31 17 0.55
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (31 bp):
CAAATGCCTCTAAAATAATTAAAAAAATTAA
Found at i:109579104 original size:23 final size:21
Alignment explanation
Indices: 109579078--109579125 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 21
109579068 CCCTCACTAA
109579078 GCCTCCATCAACAGAACCTTGTT
1 GCCTCCA--AACAGAACCTTGTT
109579101 GCCT-CAAACAGAACCTTGTT
1 GCCTCCAAACAGAACCTTGTT
109579121 GCCTC
1 GCCTC
109579126 AAGGTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 18 0.75
22 2 0.08
23 4 0.17
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.25
Consensus pattern (21 bp):
GCCTCCAAACAGAACCTTGTT
Found at i:109579112 original size:20 final size:20
Alignment explanation
Indices: 109579087--109579127 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
109579077 AGCCTCCATC
109579087 AACAGAACCTTGTTGCCTCA
1 AACAGAACCTTGTTGCCTCA
109579107 AACAGAACCTTGTTGCCTCA
1 AACAGAACCTTGTTGCCTCA
109579127 A
1 A
109579128 GGTTAATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (20 bp):
AACAGAACCTTGTTGCCTCA
Found at i:109579834 original size:36 final size:36
Alignment explanation
Indices: 109579793--109579864 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
109579783 AAAAAAATTG
*
109579793 GTATTTTGACCTCCTTCACAAATTTAGCTAGATTTT
1 GTATTTTGACCTCCTTCACAAATCTAGCTAGATTTT
109579829 GTATTTTGACCTCCTTCACAAATCTAGCTAGATTTT
1 GTATTTTGACCTCCTTCACAAATCTAGCTAGATTTT
109579865 TTCTTCTGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (36 bp):
GTATTTTGACCTCCTTCACAAATCTAGCTAGATTTT
Found at i:109583606 original size:68 final size:66
Alignment explanation
Indices: 109583534--109583680 Score: 172
Period size: 64 Copynumber: 2.2 Consensus size: 66
109583524 CATCATGTGT
* * * *
109583534 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
109583597 TGTAG
62 TGTAG
* * *
109583602 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
109583667 AG
65 AG
109583669 ACAAGAGAGCTA
1 ACAAGAGAGCTA
109583681 TGAGATAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 5 0.07
67 24 0.35
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:109584830 original size:2 final size:2
Alignment explanation
Indices: 109584823--109584852 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
109584813 GTATCATGAC
109584823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
109584853 GACTAGTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:109585169 original size:110 final size:110
Alignment explanation
Indices: 109584976--109585196 Score: 442
Period size: 110 Copynumber: 2.0 Consensus size: 110
109584966 TAAATATGAA
109584976 TGCTTGATGATTAAGCTGAAGATATTTGGTAAGATGATAATCTTGGTATAAATGTATAAGTGTGT
1 TGCTTGATGATTAAGCTGAAGATATTTGGTAAGATGATAATCTTGGTATAAATGTATAAGTGTGT
109585041 AAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGGTATAT
66 AAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGGTATAT
109585086 TGCTTGATGATTAAGCTGAAGATATTTGGTAAGATGATAATCTTGGTATAAATGTATAAGTGTGT
1 TGCTTGATGATTAAGCTGAAGATATTTGGTAAGATGATAATCTTGGTATAAATGTATAAGTGTGT
109585151 AAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGGTATAT
66 AAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGGTATAT
109585196 T
1 T
109585197 CCACACAGGC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.33
Consensus pattern (110 bp):
TGCTTGATGATTAAGCTGAAGATATTTGGTAAGATGATAATCTTGGTATAAATGTATAAGTGTGT
AAGAGATTAAGGTTGACCAAAGCTTGGAAAATAGCCTAGGTATAT
Found at i:109590858 original size:2 final size:2
Alignment explanation
Indices: 109590851--109590876 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
109590841 AAATGTTGTG
109590851 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
109590877 AAAGTTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109593995 original size:25 final size:24
Alignment explanation
Indices: 109593962--109594042 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 24
109593952 GACACACCAC
109593962 AGCTCGCATGAGCTTTCTGATATTA
1 AGCTCGCATGAG-TTTCTGATATTA
* *
109593987 AGCTTGCATGAGTTTTCTGATATTC
1 AGCTCGCATGAG-TTTCTGATATTA
* * *
109594012 AGCTCGCAAGAGTTTCTCGATAATC
1 AGCTCGCATGAGTTTCT-GATATTA
109594037 AGCTCG
1 AGCTCG
109594043 TAAGAGCTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.10
25 44 0.90
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (24 bp):
AGCTCGCATGAGTTTCTGATATTA
Found at i:109594047 original size:25 final size:24
Alignment explanation
Indices: 109593961--109594058 Score: 88
Period size: 25 Copynumber: 3.9 Consensus size: 24
109593951 GGACACACCA
* *
109593961 CAGCTCGCATGAGCTTTCTGATATT
1 CAGCTCGCAAGAG-TTTCTGATAAT
* * * *
109593986 AAGCTTGCATGAGTTTTCTGATATT
1 CAGCTCGCAAGAG-TTTCTGATAAT
109594011 CAGCTCGCAAGAGTTTCTCGATAAT
1 CAGCTCGCAAGAGTTTCT-GATAAT
* *
109594036 CAGCTCGTAAGAGCTTCCTGATA
1 CAGCTCGCAAGAG-TTTCTGATA
109594059 CTTACCTCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
24 5 0.08
25 53 0.85
26 4 0.06
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (24 bp):
CAGCTCGCAAGAGTTTCTGATAAT
Found at i:109594755 original size:35 final size:36
Alignment explanation
Indices: 109594693--109594766 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 36
109594683 TACATGACCT
*
109594693 AAATTTAAAACCCAAAACATTACAAACCC-AAACCC
1 AAATTTAAAACCCAAAACAATACAAACCCTAAACCC
*
109594728 AAATTTAAAACCCAAAACTAATA-AAACCCTAAGCCC
1 AAATTTAAAACCCAAAAC-AATACAAACCCTAAACCC
109594764 AAA
1 AAA
109594767 AAGGGCCCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
35 24 0.69
36 11 0.31
ACGTcount: A:0.55, C:0.28, G:0.01, T:0.15
Consensus pattern (36 bp):
AAATTTAAAACCCAAAACAATACAAACCCTAAACCC
Found at i:109598884 original size:29 final size:29
Alignment explanation
Indices: 109598852--109598925 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
109598842 CTGTAACTTC
109598852 ATATTATTTTAATAAATAA-TTTATAACCT
1 ATATTATTTTAATAAATAATTTTAT-ACCT
* ***
109598881 ATATTATTTTAGA-AATTAATTTTATTTTT
1 ATATTATTTTA-ATAAATAATTTTATACCT
109598910 ATATTATTTTAATAAA
1 ATATTATTTTAATAAA
109598926 ACCCCAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
28 1 0.03
29 30 0.81
30 6 0.16
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (29 bp):
ATATTATTTTAATAAATAATTTTATACCT
Found at i:109605991 original size:27 final size:27
Alignment explanation
Indices: 109605953--109606006 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
109605943 TATACTAGAC
109605953 TTGATCATGAGTCGAGCCTGGTCTGAA
1 TTGATCATGAGTCGAGCCTGGTCTGAA
109605980 TTGATCATGAGTCGAGCCTGGTCTGAA
1 TTGATCATGAGTCGAGCCTGGTCTGAA
109606007 GGTTCGCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (27 bp):
TTGATCATGAGTCGAGCCTGGTCTGAA
Found at i:109608132 original size:29 final size:29
Alignment explanation
Indices: 109608100--109608159 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
109608090 TTAATAAGTA
109608100 AAATTAT-ACTTTAATCTCTTAAAAATGAT
1 AAATTATGA-TTTAATCTCTTAAAAATGAT
* * *
109608129 AAATTTTGATTTAATCTTTTAAAAATTAT
1 AAATTATGATTTAATCTCTTAAAAATGAT
109608158 AA
1 AA
109608160 GCATATAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (29 bp):
AAATTATGATTTAATCTCTTAAAAATGAT
Found at i:109608225 original size:22 final size:23
Alignment explanation
Indices: 109608182--109608225 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
109608172 TCAAAATAAT
* *
109608182 AAAATTACATTTTTATTATCGAA
1 AAAATTACAATTTAATTATCGAA
*
109608205 AAAATTATAATTTAATT-TCGA
1 AAAATTACAATTTAATTATCGA
109608226 CGCATAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (23 bp):
AAAATTACAATTTAATTATCGAA
Found at i:109609361 original size:23 final size:23
Alignment explanation
Indices: 109609335--109609380 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
109609325 ATTATTAGTA
* *
109609335 AAGATTATATTGATTTTGAAAAT
1 AAGATTAGACTGATTTTGAAAAT
*
109609358 AAGATTAGACTGATTTTGGAAAT
1 AAGATTAGACTGATTTTGAAAAT
109609381 CTATTTCAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (23 bp):
AAGATTAGACTGATTTTGAAAAT
Found at i:109614960 original size:2 final size:2
Alignment explanation
Indices: 109614919--109614946 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
109614909 AATACTAGCT
109614919 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
109614947 AAAGGATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109616421 original size:24 final size:24
Alignment explanation
Indices: 109616393--109616461 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
109616383 TATTTTCATA
*
109616393 TATAAAATATAAATTTTAAATATT
1 TATAAAATATTAATTTTAAATATT
* *
109616417 TAT-AAATAATTAATATTAATTATT
1 TATAAAAT-ATTAATTTTAAATATT
*
109616441 TGTAAAAT-TTAA-TTTAAATAT
1 TATAAAATATTAATTTTAAATAT
109616462 ATAATCTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 18 0.49
25 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (24 bp):
TATAAAATATTAATTTTAAATATT
Found at i:109626482 original size:29 final size:30
Alignment explanation
Indices: 109626449--109626510 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
109626439 AATTATTTTA
109626449 TTGTTAA-TTTTTTATTATTTTAAAGGCAT
1 TTGTTAATTTTTTTATTATTTTAAAGGCAT
*
109626478 TTGTTAATTTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTTTTATTATTTTAAAGGCAT
109626508 TTG
1 TTG
109626511 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.24, C:0.03, G:0.13, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTTTTATTATTTTAAAGGCAT
Found at i:109628919 original size:3 final size:3
Alignment explanation
Indices: 109628911--109628970 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
109628901 TTAGAAGATA
109628911 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
109628959 AAT AAT AAT AAT
1 AAT AAT AAT AAT
109628971 TAATTTAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:109629841 original size:26 final size:26
Alignment explanation
Indices: 109629812--109629919 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
109629802 TGGTACAAAT
*
109629812 TGATAATGGGTTAGGTGAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
109629838 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109629864 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
109629890 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109629916 TGAT
1 TGAT
109629920 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109634847 original size:17 final size:18
Alignment explanation
Indices: 109634825--109634862 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
109634815 TTCTCTATAA
*
109634825 TAATTTCCAATTTT-TTT
1 TAATTTCAAATTTTATTT
*
109634842 TAATTTTAAATTTTATTT
1 TAATTTCAAATTTTATTT
109634860 TAA
1 TAA
109634863 AATATAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (18 bp):
TAATTTCAAATTTTATTT
Found at i:109640077 original size:30 final size:30
Alignment explanation
Indices: 109640041--109640113 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
109640031 GGTGAATTTT
*
109640041 GTTGCTCACACAAGCTGAAATTACATTAGG
1 GTTGCTCACACAAGCTGAAATTACATTAAG
* * * **
109640071 GTTGCTCAGACAAGTTGAATTTTTATTAAG
1 GTTGCTCACACAAGCTGAAATTACATTAAG
*
109640101 GTTACTCACACAA
1 GTTGCTCACACAA
109640114 TATGAATTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (30 bp):
GTTGCTCACACAAGCTGAAATTACATTAAG
Found at i:109644406 original size:20 final size:20
Alignment explanation
Indices: 109644381--109644420 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
109644371 TTAGAACTTG
*
109644381 ATTAAACATAGTTTAATTAA
1 ATTAAACATAATTTAATTAA
109644401 ATTAAACATAATTTAATTAA
1 ATTAAACATAATTTAATTAA
109644421 CATACTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (20 bp):
ATTAAACATAATTTAATTAA
Found at i:109645976 original size:65 final size:64
Alignment explanation
Indices: 109645825--109645983 Score: 223
Period size: 65 Copynumber: 2.4 Consensus size: 64
109645815 ATTTTAAATA
* *
109645825 TATTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTTTATCCTTATTTTAT
1 TATTTA-TTT-TTTATTATTAATTTTAAATTTTAAATATAAATGTTGTCTTTATCCTTATTTTAT
109645890 T
64 T
*
109645891 TATTTATTATTTATTATTAATTTTAAATTTTAAA-ATTGAAATGTTGTCTTTATCCTTA-TTTAT
1 TATTTATTTTTTATTATTAATTTTAAATTTTAAATA-T-AAATGTTGTCTTTATCCTTATTTTA-
109645954 TT
63 TT
*
109645956 TATTTATTTTTTATTCTTAATTTTAAAT
1 TATTTATTTTTTATTATTAATTTTAAAT
109645984 ATATATTTTT
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
63 1 0.01
64 30 0.35
65 48 0.56
66 6 0.07
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (64 bp):
TATTTATTTTTTATTATTAATTTTAAATTTTAAATATAAATGTTGTCTTTATCCTTATTTTATT
Found at i:109646030 original size:21 final size:20
Alignment explanation
Indices: 109645999--109646051 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
109645989 TTTTTGAAAT
*
109645999 TATT-TTTTTAAATTTTAAA
1 TATTATTTTTAAATATTAAA
109646018 TATTATTTATTAAATATTAAA
1 TATTATTT-TTAAATATTAAA
109646039 TATATATTTTTAA
1 TAT-TATTTTTAA
109646052 TAATACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 4 0.13
20 3 0.10
21 18 0.60
22 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTATTTTTAAATATTAAA
Found at i:109646141 original size:7 final size:7
Alignment explanation
Indices: 109646129--109646153 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
109646119 AAATCTATAT
109646129 TTTAAAA
1 TTTAAAA
109646136 TTTAAAA
1 TTTAAAA
109646143 TTTAAAA
1 TTTAAAA
109646150 TTTA
1 TTTA
109646154 TTTTATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:109646313 original size:22 final size:22
Alignment explanation
Indices: 109646286--109646333 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
109646276 TTTAAAAAAA
*
109646286 TTTAAAAT-TTAAAATATTATTT
1 TTTAAAATGTT-AAATATAATTT
109646308 TTT-AAATGTTAAATATAATTT
1 TTTAAAATGTTAAATATAATTT
109646329 TTTAA
1 TTTAA
109646334 TAATATAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTAAAATGTTAAATATAATTT
Found at i:109646353 original size:52 final size:52
Alignment explanation
Indices: 109646253--109646355 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 52
109646243 TTTTAATCCT
* * *
109646253 TTTTTTAAGTTTTAAATATATATTTTAAAAAAATTTAAAATTTAAAATATTA
1 TTTTTTAAATGTTAAATATATATTTTAAAAAAATATAAAATTTAAAATATTA
** *
109646305 TTTTTTAAATGTTAAATATA-ATTTTTTAATAATATAAGACATTT-AAATATT
1 TTTTTTAAATGTTAAATATATATTTTAAAAAAATATAA-A-ATTTAAAATATT
109646356 TAAAGATATG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
51 13 0.30
52 26 0.60
53 4 0.09
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (52 bp):
TTTTTTAAATGTTAAATATATATTTTAAAAAAATATAAAATTTAAAATATTA
Found at i:109646540 original size:24 final size:24
Alignment explanation
Indices: 109646495--109646547 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
109646485 TTGTCTTTTT
* *
109646495 CTTTTATTTTTTTTCTTATTTTAA
1 CTTTTATTGTTTTTCTAATTTTAA
*
109646519 GTTTTATTGTTTTT-TAACTTTTAA
1 CTTTTATTGTTTTTCTAA-TTTTAA
109646543 CTTTT
1 CTTTT
109646548 TCTTAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.72
Consensus pattern (24 bp):
CTTTTATTGTTTTTCTAATTTTAA
Found at i:109646666 original size:57 final size:57
Alignment explanation
Indices: 109646589--109646747 Score: 232
Period size: 58 Copynumber: 2.8 Consensus size: 57
109646579 TTTAAATTTG
109646589 TTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTTTATCCTTA
1 TTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTTTATCCTTA
* * *
109646646 TTT-TATTTATTTATTATTAATTTTAAATTTTAAATTTTAAATGTTGTCTTTATCCTTA
1 TTTAT-TTTATTTATTATTAATTTTAAATTTTAAA-TATATATTTTGTCTTTATCCTTA
* *
109646704 TTTATTTTATTTATTTTTTATTCTT-AATTTTAAATATATATTTT
1 TTTATTTTATTTATTATTAATT-TTAAATTTTAAATATATATTTT
109646748 TGAAATTACT
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
56 1 0.01
57 39 0.43
58 47 0.52
59 3 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (57 bp):
TTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTTTATCCTTA
Found at i:109646785 original size:21 final size:20
Alignment explanation
Indices: 109646758--109646806 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
109646748 TGAAATTACT
109646758 TTTTTAAAGT-TTAAATATTA
1 TTTTTAAA-TATTAAATATTA
109646778 TTTATTAAATATTAAATATATA
1 TTT-TTAAATATTAAATAT-TA
109646800 TTTTTAA
1 TTTTTAA
109646807 TAATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.15
21 17 0.65
22 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTTAAATATTAAATATTA
Found at i:109646896 original size:7 final size:7
Alignment explanation
Indices: 109646884--109646908 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
109646874 AAATGTATAT
109646884 TTTAAAA
1 TTTAAAA
109646891 TTTAAAA
1 TTTAAAA
109646898 TTTAAAA
1 TTTAAAA
109646905 TTTA
1 TTTA
109646909 TTTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:109646915 original size:14 final size:14
Alignment explanation
Indices: 109646867--109646917 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
109646857 TAGTTTTATA
*
109646867 ATATTTT-AAATGT
1 ATATTTTAAAATTT
109646880 ATATTTTAAAATTT
1 ATATTTTAAAATTT
* *
109646894 AAAATTTAAAATTT
1 ATATTTTAAAATTT
*
109646908 ATTTTTTAAA
1 ATATTTTAAA
109646918 TATTAAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
13 7 0.23
14 24 0.77
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
ATATTTTAAAATTT
Found at i:109647068 original size:21 final size:21
Alignment explanation
Indices: 109647046--109647085 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
109647036 AAAAAATTTA
*
109647046 AAAT-TTAAAAATTATTTTTT
1 AAATGTTAAAAATAATTTTTT
*
109647066 AAATGTTAAATATAATTTTT
1 AAATGTTAAAAATAATTTTT
109647086 AATAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
AAATGTTAAAAATAATTTTTT
Found at i:109647175 original size:755 final size:756
Alignment explanation
Indices: 109645746--109647198 Score: 2578
Period size: 755 Copynumber: 1.9 Consensus size: 756
109645736 TTTTAAATGG
*
109645746 TTTCTTATTTTAAGTTTTATTTTTTTCAACTTTTAACTTTTTCTTAATTTTAAAAAACTTTAAAT
1 TTTCTTATTTTAAGTTTTATTTTTTTCAACTTTTAACTTTTTCTTAATTTTAAAAAACATTAAAT
109645811 GTATATTTTAAATATATTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTT
66 GTATATTTTAAATATATTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTT
109645876 TATCCTTATTTTATTTATTTATTATTTATTATTAATTTTAAATTTTAAAATTGAAATGTTGTCTT
131 TATCCTTA--TTATTTA-TTATTATTTATTATTAATTTTAAATTTTAAAATTGAAATGTTGTCTT
*
109645941 TATCCTTATTTATTTTATTTATTTTTTATTCTTAATTTTAAATATATATTTTTGAAATTATTTTT
193 TATCCTTATTTATTTTATTTATTTTTTATTCTTAATTTTAAATATATATTTTTGAAATTACTTTT
* *
109646006 TTAAATTTTAAATATTATTTATTAAATATTAAATATATATTTTTAATAATACAAAACATTTAAAT
258 TTAAAGTTTAAATATTATTTATTAAATATTAAATATATATTTTTAATAATAAAAAACATTTAAAT
109646071 ATTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATCTATATTTTAAAA
323 ATTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATCTATATTTTAAAA
* *
109646136 TTTAAAATTTAAAATTTATTTTATAAATATTAAATAAATTTTATTTATTCTTATTATTACTTTTA
388 TTTAAAATTTAAAATTTATTTTATAAATATTAAATAAATTTTATTTATTATTATTATTAATTTTA
* *
109646201 AAAAAACTTGATATGTGTATTTGAAATATTGTATAATATATTTTTTAATCCTTTTTTTAAGTTTT
453 AAAAAACTAGAAATGTGTATTTGAAATATTGTATAATATATTTTTTAATCCTTTTTTTAAGTTTT
109646266 AAATATATATTTTAAAAAAATTTAAAATTTAAAATATTATTTTTTAAATGTTAAATATAATTTTT
518 AAATATATATTTTAAAAAAATTTAAAATTTAAAATATTATTTTTTAAATGTTAAATATAATTTTT
*
109646331 TAATAATATAAGACATTTAAATATTTAAAGATATGATCTTTCAAATTTATTATTAATTTTATAAT
583 TAATAATATAAGACATTTAAATATTTAAAGATATGACCTTTCAAATTTATTATTAATTTTATAAT
109646396 ATTTTATAATAAATAAATAAATAAAATAAGGATAAAGACAAAATATATAGTTTGTCTGTTGATTT
648 ATTTTATAATAAATAAATAAAT-AAATAAGGATAAAGACAAAATATATAGTTTGTCTGTTGATTT
109646461 TTTCCTTTTTACTTTTTTTTTAAGTTGTCTTTTTCTTTTATTTTT
712 TTTCCTTTTTACTTTTTTTTTAAGTTGTCTTTTTCTTTTATTTTT
*
109646506 TTTCTTATTTTAAGTTTTATTGTTTTTTAACTTTTAACTTTTTCTTAATTTTAAAAAAACATTAA
1 TTTCTTATTTTAAGTTTTATT-TTTTTCAACTTTTAACTTTTTCTTAATTTT-AAAAAACATTAA
* *
109646571 ATGTATATTTTAAATTTGTTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTC
64 ATGTATATTTTAAATATATTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTC
* *
109646636 TTTATCCTTA-T-TTTA-T-TTATTTATTATTAATTTTAAATTTTAAATTTTAAATGTTGTCTTT
129 TTTATCCTTATTATTTATTATTATTTATTATTAATTTTAAATTTTAAAATTGAAATGTTGTCTTT
109646697 ATCCTTATTTATTTTATTTATTTTTTATTCTTAATTTTAAATATATATTTTTGAAATTACTTTTT
194 ATCCTTATTTATTTTATTTATTTTTTATTCTTAATTTTAAATATATATTTTTGAAATTACTTTTT
*
109646762 TAAAGTTTAAATATTATTTATTAAATATTAAATATATATTTTTAATAATAAAAAATATTTAAATA
259 TAAAGTTTAAATATTATTTATTAAATATTAAATATATATTTTTAATAATAAAAAACATTTAAATA
* *
109646827 TTTAAAGATATGACCTTTCAAGTTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAAAT
324 TTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATCTATATTTTAAAAT
* *
109646892 TTAAAATTTAAAATTTATTTTTTAAATATTAAATATATTTTATTTATTATTATTATTAATTTT-A
389 TTAAAATTTAAAATTTATTTTATAAATATTAAATAAATTTTATTTATTATTATTATTAATTTTAA
109646956 AAAAACTAGAAATGTGTATTTGAAATATTGTATAATATATTTTTTAATCCTTTTTTTTGAAGTTT
454 AAAAACTAGAAATGTGTATTTGAAATATTGTATAATATATTTTTTAATCC-TTTTTTT-AAGTTT
* *
109647021 TAGATATATATTTTTAAAAAATTTAAAATTTAAAA-ATTATTTTTTAAATGTTAAATATAA-TTT
517 TAAATATATATTTTAAAAAAATTTAAAATTTAAAATATTATTTTTTAAATGTTAAATATAATTTT
109647084 TTAATAATATAAGACATTTAAATATTTAAAGATATGACCTTTCAAATTTATTATTAATTTTATAA
582 TTAATAATATAAGACATTTAAATATTTAAAGATATGACCTTTCAAATTTATTATTAATTTTATAA
*
109647149 TATTTTATAATAAATAAATAAAATAAATAAGGATAAAGATAAAATATATA
647 TATTTTATAATAAATAAAT-AAATAAATAAGGATAAAGACAAAATATATA
109647199 TTTAAAATTT
Statistics
Matches: 666, Mismatches: 22, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
754 160 0.24
755 327 0.49
756 40 0.06
758 4 0.01
759 1 0.00
760 21 0.03
761 29 0.04
762 84 0.13
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (756 bp):
TTTCTTATTTTAAGTTTTATTTTTTTCAACTTTTAACTTTTTCTTAATTTTAAAAAACATTAAAT
GTATATTTTAAATATATTTATTTTATTTATTATTAATTTTAAATTTTAAATATATATTTTGTCTT
TATCCTTATTATTTATTATTATTTATTATTAATTTTAAATTTTAAAATTGAAATGTTGTCTTTAT
CCTTATTTATTTTATTTATTTTTTATTCTTAATTTTAAATATATATTTTTGAAATTACTTTTTTA
AAGTTTAAATATTATTTATTAAATATTAAATATATATTTTTAATAATAAAAAACATTTAAATATT
TAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATCTATATTTTAAAATTT
AAAATTTAAAATTTATTTTATAAATATTAAATAAATTTTATTTATTATTATTATTAATTTTAAAA
AAACTAGAAATGTGTATTTGAAATATTGTATAATATATTTTTTAATCCTTTTTTTAAGTTTTAAA
TATATATTTTAAAAAAATTTAAAATTTAAAATATTATTTTTTAAATGTTAAATATAATTTTTTAA
TAATATAAGACATTTAAATATTTAAAGATATGACCTTTCAAATTTATTATTAATTTTATAATATT
TTATAATAAATAAATAAATAAATAAGGATAAAGACAAAATATATAGTTTGTCTGTTGATTTTTTC
CTTTTTACTTTTTTTTTAAGTTGTCTTTTTCTTTTATTTTT
Found at i:109647227 original size:4 final size:4
Alignment explanation
Indices: 109647218--109647244 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
109647208 TAAAATTAAT
109647218 AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AAT
109647245 TTAAAATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:109647292 original size:17 final size:18
Alignment explanation
Indices: 109647270--109647318 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 18
109647260 AAAGTTTTTT
*
109647270 TTAAAA-TTAAGAAAAAG
1 TTAAAAGTTAAAAAAAAG
109647287 TTAAAAGTTAAAAAAAAG
1 TTAAAAGTTAAAAAAAAG
*
109647305 --AAAACTTAAAAAAA
1 TTAAAAGTTAAAAAAA
109647319 GAAAAAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 13 0.45
17 6 0.21
18 10 0.34
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.20
Consensus pattern (18 bp):
TTAAAAGTTAAAAAAAAG
Found at i:109647347 original size:37 final size:37
Alignment explanation
Indices: 109647305--109647382 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
109647295 TAAAAAAAAG
109647305 AAAACTTAAAAAAAGAAAAAGAATAAAAG-AAAAA-GAC
1 AAAACTTAAAAAAA-AAAAA-AATAAAAGTAAAAAGGAC
*
109647342 AAAACTTAAAAAAAATAAAAATAAAAGTAAAAAGGAC
1 AAAACTTAAAAAAAAAAAAAATAAAAGTAAAAAGGAC
109647379 AAAA
1 AAAA
109647383 TCAACAGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
35 8 0.21
36 9 0.24
37 21 0.55
ACGTcount: A:0.76, C:0.05, G:0.09, T:0.10
Consensus pattern (37 bp):
AAAACTTAAAAAAAAAAAAAATAAAAGTAAAAAGGAC
Found at i:109649884 original size:26 final size:26
Alignment explanation
Indices: 109649847--109649982 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
109649837 TGATACAAAT
* *
109649847 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
109649873 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* ** *
109649899 TAATAATACGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
109649925 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
109649951 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
109649977 TGATAA
1 TGATAA
109649983 GAATATCATG
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:109653621 original size:42 final size:43
Alignment explanation
Indices: 109653556--109653641 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 43
109653546 AAATCGTACA
**
109653556 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
*
109653599 ATGCC-ACGTCCCAGGCAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
109653641 A
1 A
109653642 AATCACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
41 1 0.03
42 31 0.82
43 6 0.16
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:109666915 original size:26 final size:26
Alignment explanation
Indices: 109666886--109666949 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
109666876 ATAAATATGT
109666886 GTATTTATTTTTGTAAACCCATTTCG
1 GTATTTATTTTTGTAAACCCATTTCG
*
109666912 GTATTTATTTTTGTAAATCCATTTCG
1 GTATTTATTTTTGTAAACCCATTTCG
109666938 GTATTTATTTTT
1 GTATTTATTTTT
109666950 ATGTATTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (26 bp):
GTATTTATTTTTGTAAACCCATTTCG
Found at i:109668103 original size:467 final size:466
Alignment explanation
Indices: 109667225--109668165 Score: 1747
Period size: 467 Copynumber: 2.0 Consensus size: 466
109667215 TGTAGCGACG
* *
109667225 TAAAAATTTGCTTTCGGTCGCTAATTGTGGCGACTTAGTGAAAACTTGAAAACTGAAGTTTGATT
1 TAAAATTTTGCTTTCGGTCGCTAATTGTGGCGACTTAGTGAAAACTTGAAAACTGAAATTTGATT
*
109667290 TTTGGAAATAAAAGGGAGTCGCCACCGATCCTTTTTGTAGGTGTGATCGGACACCTAATAAATTT
66 TTTGGAAATAAAAGGGAGTCGCCACCGATCCTTTTTGTAGGTGTGATCAGACACCTAATAAATTT
109667355 ATTTTTAACAAAAAGAAGGCTGAGTTTAGGTCTACCTAAAAATCCAGAGAAAAAAATTAGGGTTC
131 ATTTTTAACAAAAAGAAGGCTGAGTTTAGGTCTACCTAAAAATCCAGAGAAAAAAATTAGGGTTC
*
109667420 GAGAGTCAGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCCCAAAATTGGTATCTTGTAG
196 GAGAGTCAGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCCCAAAATTGGAATCTTGTAG
*
109667485 AATACGTATGGTCTTGATTTTCAAAAAATACGAGTTCAATGTAACATTTAGTCGTAATACAATTG
261 AATACGTATGGTCTTGATTTTCAAAAAATACAAGTTCAATGTAACATTTAGTCGTAATACAATTG
* *
109667550 AAACACGAGAAATTTTAGTTTTTCGGTTTTTTAGAAGGGCATACCTTTTTAACACGAGTCGATTG
326 AAACACGAGAAATTTTAGTTTTTCGATTTTTTAGAAGGGCATACCGTTTTAACACGAGTCGATTG
*
109667615 ATGTTCACCCAACATAGCGATGAAATCGGCGACTTAGTATTAAACCGATACGTTGCCTTACTTAT
391 ATGTTCACCCAACATAGCGATGAAATAGGCGACTTAGTATTAAACCGATACGTTGCCTTACTTAT
*
109667680 TAAAAAATGAA
456 TAAAAAAGGAA
* *
109667691 TAAAATTTTGCTTTCGGTCTCTAATTGTGGCGATTTAGTGAAAACTTGAAAACTGAAATTTGATT
1 TAAAATTTTGCTTTCGGTCGCTAATTGTGGCGACTTAGTGAAAACTTGAAAACTGAAATTTGATT
109667756 TTTGGAAATAAAAGGGAGTCGCCACCGATCCTTTTTGTAGGTGTGATCAGACACCTAATAAATTT
66 TTTGGAAATAAAAGGGAGTCGCCACCGATCCTTTTTGTAGGTGTGATCAGACACCTAATAAATTT
*
109667821 ATTTTTAACAAAAAGAAGGCTGAGTTTAGGTCTACGTAAAAATCCAGAGAAAAAAAATTAGGGTT
131 ATTTTTAACAAAAAGAAGGCTGAGTTTAGGTCTACCTAAAAATCCAGAG-AAAAAAATTAGGGTT
*
109667886 CGGGAGTCAGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCCCAAAATTGGAATCTTGTA
195 CGAGAGTCAGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCCCAAAATTGGAATCTTGTA
109667951 GAATACGTATGGTCTTGATTTTCAAAAAATACAAGTTCAATGTAACATTTAGTCGTAATACAATT
260 GAATACGTATGGTCTTGATTTTCAAAAAATACAAGTTCAATGTAACATTTAGTCGTAATACAATT
109668016 GAAACACGAGAAATTTTAGTTTTTCGATTTTTTAGAAGGGCATACCGTTTTAACACGAGTCGATT
325 GAAACACGAGAAATTTTAGTTTTTCGATTTTTTAGAAGGGCATACCGTTTTAACACGAGTCGATT
*
109668081 GATGTTCACCCAACATAGCGATGAAATAGGTGACTTAGTATTAAACCGATACGTTGCCTTACTTA
390 GATGTTCACCCAACATAGCGATGAAATAGGCGACTTAGTATTAAACCGATACGTTGCCTTACTTA
109668146 TTAAAAAAGGAA
455 TTAAAAAAGGAA
109668158 TAAAATTT
1 TAAAATTT
109668166 CCTAAATAAT
Statistics
Matches: 460, Mismatches: 14, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
466 173 0.38
467 287 0.62
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (466 bp):
TAAAATTTTGCTTTCGGTCGCTAATTGTGGCGACTTAGTGAAAACTTGAAAACTGAAATTTGATT
TTTGGAAATAAAAGGGAGTCGCCACCGATCCTTTTTGTAGGTGTGATCAGACACCTAATAAATTT
ATTTTTAACAAAAAGAAGGCTGAGTTTAGGTCTACCTAAAAATCCAGAGAAAAAAATTAGGGTTC
GAGAGTCAGTTACGCGCGAGGAAGGTATTAGCACCCTCGCGACGCCCAAAATTGGAATCTTGTAG
AATACGTATGGTCTTGATTTTCAAAAAATACAAGTTCAATGTAACATTTAGTCGTAATACAATTG
AAACACGAGAAATTTTAGTTTTTCGATTTTTTAGAAGGGCATACCGTTTTAACACGAGTCGATTG
ATGTTCACCCAACATAGCGATGAAATAGGCGACTTAGTATTAAACCGATACGTTGCCTTACTTAT
TAAAAAAGGAA
Found at i:109668715 original size:16 final size:16
Alignment explanation
Indices: 109668684--109668739 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
109668674 ATATATATAT
109668684 ATATACATACTTACATA
1 ATATA-ATACTTACATA
*
109668701 ATATAATATTTACATA
1 ATATAATACTTACATA
*
109668717 ATAT-ATACATACATA
1 ATATAATACTTACATA
109668732 ATAATAAT
1 AT-ATAAT
109668740 GTTGAAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 11 0.32
16 16 0.47
17 7 0.21
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAATACTTACATA
Found at i:109668943 original size:24 final size:24
Alignment explanation
Indices: 109668910--109668967 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
109668900 TGAAATAGTA
*
109668910 AAAGAAATATATAACAAATAACAT
1 AAAGATATATATAACAAATAACAT
* **
109668934 AAAGATATATGTATGAAATAACAT
1 AAAGATATATATAACAAATAACAT
*
109668958 AAAAATATAT
1 AAAGATATAT
109668968 GAATAGTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (24 bp):
AAAGATATATATAACAAATAACAT
Found at i:109675372 original size:16 final size:16
Alignment explanation
Indices: 109675348--109675402 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
109675338 TATATATATG
109675348 TATACATATTTACATAA
1 TATA-ATATTTACATAA
109675365 TATAATATTTACATAA
1 TATAATATTTACATAA
**
109675381 TAT-ATACATACATAA
1 TATAATATTTACATAA
109675396 TAATAAT
1 T-ATAAT
109675403 GTTGAAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 11 0.32
16 17 0.50
17 6 0.18
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (16 bp):
TATAATATTTACATAA
Found at i:109675607 original size:24 final size:24
Alignment explanation
Indices: 109675574--109675631 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
109675564 TGAAATAGTA
*
109675574 AAAGAAATATATAACAAATAACAT
1 AAAGATATATATAACAAATAACAT
* **
109675598 AAAGATATATGTATGAAATAACAT
1 AAAGATATATATAACAAATAACAT
*
109675622 AAAAATATAT
1 AAAGATATAT
109675632 GAATAGTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (24 bp):
AAAGATATATATAACAAATAACAT
Found at i:109676113 original size:16 final size:16
Alignment explanation
Indices: 109676092--109676128 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
109676082 TAAAGAAAAC
*
109676092 ATATATATGTAGGTAA
1 ATATATATGTAGCTAA
109676108 ATATATATGTAGCTAA
1 ATATATATGTAGCTAA
109676124 ATATA
1 ATATA
109676129 ATATAATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.38
Consensus pattern (16 bp):
ATATATATGTAGCTAA
Found at i:109676188 original size:25 final size:25
Alignment explanation
Indices: 109676138--109676188 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
109676128 AATATAATAG
*
109676138 TAACAATATATAAAAATAATAGTGA
1 TAACAATATATAAAAATAACAGTGA
* *
109676163 TAACAATATTATATATATAACA-TGA
1 TAACAATA-TATAAAAATAACAGTGA
109676188 T
1 T
109676189 TAATATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (25 bp):
TAACAATATATAAAAATAACAGTGA
Found at i:109678221 original size:83 final size:88
Alignment explanation
Indices: 109678129--109678336 Score: 237
Period size: 91 Copynumber: 2.4 Consensus size: 88
109678119 GCCAAAGCTT
* * * * ***
109678129 AACTCACCTCTCGCAATATGAGTTGGTCTTTG-TG-A-AACTT-AA-AAGCAAATTTTGAAAATA
1 AACTCACCTCTCGCAATATGAGTTGATCTTTGAAGTATAAATTAAATAAACAAAAACTGAAAATA
109678189 CCTCGACATGTGACACGAGGCTC
66 CCTCGACATGTGACACGAGGCTC
* *
109678212 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAATAAATAAAAACTGAAA
1 AACTCACCTCTCGCAATATGAGTTGATCTTTG--AAGTATAAATT-AAATAAACAAAAACTGAAA
* *
109678277 ATACCTCGTCATGTGACCCGAGGCTC
63 ATACCTCGACATGTGACACGAGGCTC
* *
109678303 AACTCACCTCTTGCAATATGAGTTGATTTTTGAA
1 AACTCACCTCTCGCAATATGAGTTGATCTTTGAA
109678337 AAACAGAAAT
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
83 30 0.29
86 1 0.01
87 1 0.01
88 4 0.04
89 2 0.02
90 2 0.02
91 65 0.62
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (88 bp):
AACTCACCTCTCGCAATATGAGTTGATCTTTGAAGTATAAATTAAATAAACAAAAACTGAAAATA
CCTCGACATGTGACACGAGGCTC
Found at i:109678347 original size:91 final size:91
Alignment explanation
Indices: 109678181--109678347 Score: 280
Period size: 91 Copynumber: 1.8 Consensus size: 91
109678171 AAGCAAATTT
109678181 TGAAAATACCTCGACATGTGACACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 TGAAAATACCTCGACATGTGACACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
** *
109678246 AAGTATAAATTGAAATAAATAAAAAC
66 AAACAGAAATTGAAATAAATAAAAAC
* * *
109678272 TGAAAATACCTCGTCATGTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAA
1 TGAAAATACCTCGACATGTGACACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
109678337 AAACAGAAATT
66 AAACAGAAATT
109678348 AGAAGCTCAA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 70 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (91 bp):
TGAAAATACCTCGACATGTGACACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AAACAGAAATTGAAATAAATAAAAAC
Found at i:109678487 original size:139 final size:142
Alignment explanation
Indices: 109678208--109678477 Score: 368
Period size: 139 Copynumber: 1.9 Consensus size: 142
109678198 GTGACACGAG
* * *
109678208 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTGAAATAAATAAAAACT
1 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCATAAATT--AATAAACAAAAACT
* * *
109678273 GAAAATACCTCGTCATGTGACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAA
64 GAAAATACCTCGTCATATGACCCGAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
109678338 AACAGAAATTAGAA
129 AACAGAAATTAGAA
* * *
109678352 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAA-CATGAATT-A-AAACAGAAATTGA
1 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCATAAATTAATAAACAAAAACTGA
* * * *
109678414 AAATTCCTCAG-CATATGAGCCGAGCCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA
66 AAATACCTC-GTCATATGACCCGAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
109678478 GTATAAATTA
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
139 65 0.58
140 2 0.02
143 6 0.05
144 39 0.35
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (142 bp):
GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCATAAATTAATAAACAAAAACTGA
AAATACCTCGTCATATGACCCGAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
CAGAAATTAGAA
Found at i:109678578 original size:14 final size:14
Alignment explanation
Indices: 109678559--109678593 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
109678549 GTTGATTTTT
109678559 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
109678573 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
109678587 TTGAAAA
1 TTGAAAA
109678594 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:109678634 original size:89 final size:84
Alignment explanation
Indices: 109678352--109678991 Score: 473
Period size: 86 Copynumber: 7.5 Consensus size: 84
109678342 GAAATTAGAA
*
109678352 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTG-AAAACATG-AATTAAAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-GAAATTAAAACAGAAATTGAA
* *
109678415 AATTCCTCAGCATATGAGCC-GAG
65 AATACCTCAG--TGT-A-CCTGAG
* * * ** * * *
109678438 CCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATT-AAACAGAATTTGGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAACAGAAATTGAAA
109678502 ATACCTCAGCGTGTGACCTGAG
66 ATACCTCA--GTGT-ACCTGAG
* *
109678524 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAGTAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAA-CAGAAATT
109678589 GAAAATACCTCAGTGTACTCTGAG
62 GAAAATACCTCAGTGTAC-CTGAG
* *** * * *
109678613 GCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTTGAAA-A-ATA-T-AAAC------TAACA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAACAGAAATTGAAA
* *
109678668 ATACCTCAGCGTGCGACCCGAG
66 ATACCTCA--GTG-TACCTGAG
* * * * * * *
109678690 GCTCAACTCACCACTTGCAATATGGGTTGATTTTTTGAAAAGCATAAGTTGGAAAACGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT--AAAACAGAAATTG
* * *
109678755 AAAATACCCCAGCGTGCCCTGAG
63 AAAATACCTCAGTGT-ACCTGAG
* * ** *
109678778 GCTCAACTCACCTCTCGCAATATGAATTGATTTTGGAAAAGTAGAAATTAAAGACAGAAATTGAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA-ACAGAAATTGAA
*
109678843 ATTACCTCAGCGTGT-CCTGAG
65 AATACCTCA--GTGTACCTGAG
* * * ***
109678864 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGACAAACAGAATCTTGAAAACAGGTTTTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAA-ATT-AAAACAGAAATTGA
* * *
109678929 AAATACTTCGGCATGTGACCCGAG
64 AAATACCTCAG--TGT-ACCTGAG
* * *
109678953 GCTCAGCTCACCTCTTGCAATATGAGTTGATTTCTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
109678992 GTAAAAATAA
Statistics
Matches: 435, Mismatches: 82, Indels: 71
0.74 0.14 0.12
Matches are distributed among these distances:
75 11 0.03
77 33 0.08
78 9 0.02
79 1 0.00
80 1 0.00
81 1 0.00
82 3 0.01
84 5 0.01
85 8 0.02
86 149 0.34
87 50 0.11
88 58 0.13
89 76 0.17
90 13 0.03
91 17 0.04
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (84 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAACAGAAATTGAAA
ATACCTCAGTGTACCTGAG
Found at i:109678789 original size:165 final size:165
Alignment explanation
Indices: 109678501--109678811 Score: 446
Period size: 165 Copynumber: 1.9 Consensus size: 165
109678491 AGAATTTGGA
* * * *
109678501 AATACCTCAGCGTGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAAA
* * * *
109678566 ACAGAAATTGAAAAGTAGAAATTGAAAATACCTCAGTGTACTCTGAGGCTCAACTCACCTCTCTC
66 ACAGAAATTGAAAAG-AGAAATTGAAAATACCCCAGCGTACCCTGAGGCTCAACTCACCTCTCGC
*
109678631 AATATGAGTTGATTTTTTTGAAAAATATAAACTAAC
130 AATATGAATTGATTTTTTTGAAAAATATAAACTAAC
* *
109678667 AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCACTTGCAATATGGGTTGA-TTTTTTGAAAA
1 AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAAA
* * * *
109678731 GCATAAGTTGGAAAACG-GAAATTGAAAATACCCCAGCGTGCCCTGAGGCTCAACTCACCTCTCG
66 ACAGAAATT-GAAAA-GAGAAATTGAAAATACCCCAGCGTACCCTGAGGCTCAACTCACCTCTCG
109678795 CAATATGAATTGATTTT
129 CAATATGAATTGATTTT
109678812 GGAAAAGTAG
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
165 75 0.59
166 52 0.41
167 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (165 bp):
AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAAA
ACAGAAATTGAAAAGAGAAATTGAAAATACCCCAGCGTACCCTGAGGCTCAACTCACCTCTCGCA
ATATGAATTGATTTTTTTGAAAAATATAAACTAAC
Found at i:109678864 original size:340 final size:335
Alignment explanation
Indices: 109678352--109678985 Score: 791
Period size: 340 Copynumber: 1.9 Consensus size: 335
109678342 GAAATTAGAA
*
109678352 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAA
1 GCTCAACTCACCACTCACAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAA
* * * * * * * *
109678417 TTCCTCAGCATATGAGCCGAGCCTTAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAGTAT
66 TACCCCAGCA-ATGACCCGAGCCTCAACTCACCTCTCGCAATATGAATTGATTTTGGAAAAGTAG
* *
109678482 AAATTAAACAGAATTTGGAAATACCTCAGCGTGTGACCTGAGGTTCAACTCACCTCTCGCAATAT
130 AAATTAAACAGAAATTGGAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
109678547 GAGTTGATTTTTTTGAAAAACAGAA-ATTGAAAAGTAGAAATTGAAAATACCTCAG-TGT-ACTC
194 AAGTTGA--TTTTTGAAAAACAGAATATTGAAAA-CAGAAATTGAAAATACCTCAGATGTGAC-C
*
109678609 TGAGGCTCAACTCACCTCTCT-CAATATGAGTTGATTTTTTTGAAAAATATAAACTAACAATACC
255 CGAGGCTCAACTCACCTCT-TGCAATATGAGTTGATTTTTTTGAAAAATATAAACTAACAATACC
109678673 TCAGCGTGCGACCCGAG
319 TCAGCGTGCGACCCGAG
** * *
109678690 GCTCAACTCACCACTTGCAATATGGGTTGATTTTTTGAAAAGCAT-AAGTTGGAAAACGGAAATT
1 GCTCAACTCACCACTCACAATATGAGTTGA-TTTTTGAAAA-CATGAA-TT--AAAACAGAAATT
* *
109678754 GAAAATACCCCAGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTGGAAA
61 GAAAATACCCCAGCAATGACCC-GAGCCTCAACTCACCTCTCGCAATATGAATTGATTTTGGAAA
*
109678817 AGTAGAAATTAAAGACAGAAATT-GACATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTC
125 AGTAGAAATT-AA-ACAGAAATTGGA-AATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTC
* * *** * *
109678880 GCAATATAAGTTGATTTTTGACAAACAGAATCTTGAAAACAGGTTTTGAAAATACTTCGGCATGT
187 GCAATATAAGTTGATTTTTGAAAAACAGAATATTGAAAACAGAAATTGAAAATACCTCAG-ATGT
*
109678945 GACCCGAGGCTCAGCTCACCTCTTGCAATATGAGTTGATTT
251 GACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
109678986 CTGAAAGTAA
Statistics
Matches: 253, Mismatches: 29, Indels: 26
0.82 0.09 0.08
Matches are distributed among these distances:
338 56 0.22
339 22 0.09
340 124 0.49
341 6 0.02
342 45 0.18
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (335 bp):
GCTCAACTCACCACTCACAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAA
TACCCCAGCAATGACCCGAGCCTCAACTCACCTCTCGCAATATGAATTGATTTTGGAAAAGTAGA
AATTAAACAGAAATTGGAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATATAA
GTTGATTTTTGAAAAACAGAATATTGAAAACAGAAATTGAAAATACCTCAGATGTGACCCGAGGC
TCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAATATAAACTAACAATACCTCAGCGT
GCGACCCGAG
Found at i:109679888 original size:42 final size:40
Alignment explanation
Indices: 109679807--109679892 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 40
109679797 TATGTTAATC
109679807 AAGACGCCCTTTTCGGGTTTTCACCTTGATCCTTTTTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGAT-CTTTTTTTTT
* *
109679848 AAGATGCCCTTTTTCGGGTTTTCATCTTGAT-TTTCCTTTTTT
1 AAGACGCCC-TTTTCGGGTTTTCACCTTGATCTTT--TTTTTT
109679890 AAG
1 AAG
109679893 CATAATATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
40 3 0.08
41 8 0.20
42 29 0.73
ACGTcount: A:0.14, C:0.21, G:0.15, T:0.50
Consensus pattern (40 bp):
AAGACGCCCTTTTCGGGTTTTCACCTTGATCTTTTTTTTT
Found at i:109691348 original size:8 final size:8
Alignment explanation
Indices: 109691335--109691364 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
109691325 TTTTAAAATG
109691335 TATATAAA
1 TATATAAA
109691343 TATATAAA
1 TATATAAA
*
109691351 TATATATA
1 TATATAAA
109691359 TATATA
1 TATATA
109691365 CATACTTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
TATATAAA
Found at i:109691391 original size:16 final size:16
Alignment explanation
Indices: 109691360--109691415 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
109691350 ATATATATAT
109691360 ATATACATACTTACATA
1 ATATA-ATACTTACATA
*
109691377 ATATAATATTTACATA
1 ATATAATACTTACATA
* *
109691393 ACAT-ATACATACATA
1 ATATAATACTTACATA
109691408 ATAATAAT
1 AT-ATAAT
109691416 GTTGAAAACA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 10 0.31
16 15 0.47
17 7 0.22
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATAATACTTACATA
Found at i:109691540 original size:24 final size:23
Alignment explanation
Indices: 109691513--109691598 Score: 66
Period size: 24 Copynumber: 3.4 Consensus size: 23
109691503 TAACAAGGAT
109691513 AAAATATATACATAAGATAGTACA
1 AAAATATATACATAAGATAGTA-A
* *
109691537 AAAATATATAAATATTATGATATTTAA
1 AAAATATATACATA--A-GATA-GTAA
*
109691564 AAAACATATACATGAA-ATAGTAAA
1 AAAATATATACAT-AAGATAGT-AA
109691588 AGAAATATATA
1 A-AAATATATA
109691599 ACAAATAACA
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 1 0.02
24 19 0.39
25 8 0.16
26 2 0.04
27 16 0.33
28 3 0.06
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (23 bp):
AAAATATATACATAAGATAGTAA
Found at i:109691619 original size:24 final size:24
Alignment explanation
Indices: 109691586--109691643 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
109691576 TGAAATAGTA
*
109691586 AAAGAAATATATAACAAATAACAT
1 AAAGATATATATAACAAATAACAT
* **
109691610 AAAGATATATGTATGAAATAACAT
1 AAAGATATATATAACAAATAACAT
*
109691634 AAAAATATAT
1 AAAGATATAT
109691644 GAATAGTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.26
Consensus pattern (24 bp):
AAAGATATATATAACAAATAACAT
Found at i:109692186 original size:25 final size:25
Alignment explanation
Indices: 109692136--109692186 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
109692126 AATATAATAG
*
109692136 TAACAATATATAAAAATAATAGTGA
1 TAACAATATATAAAAATAACAGTGA
* *
109692161 TAACAATATTATATATATAACA-TGA
1 TAACAATA-TATAAAAATAACAGTGA
109692186 T
1 T
109692187 TAATATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (25 bp):
TAACAATATATAAAAATAACAGTGA
Found at i:109693342 original size:13 final size:13
Alignment explanation
Indices: 109693324--109693348 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109693314 TGGGCTGAGG
109693324 GTAGGTTTGGGTA
1 GTAGGTTTGGGTA
109693337 GTAGGTTTGGGT
1 GTAGGTTTGGGT
109693349 TTTGTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
GTAGGTTTGGGTA
Found at i:109696440 original size:30 final size:29
Alignment explanation
Indices: 109696406--109696495 Score: 103
Period size: 30 Copynumber: 3.1 Consensus size: 29
109696396 ATTAATAAAA
*
109696406 AAATTGCATTTTGACTCCTAAACTTTCTTT
1 AAATTTCATTTTGAC-CCTAAACTTTCTTT
* * *
109696436 AAATTTTATTTAGACCCCTAAACTTTCCTT
1 AAATTTCATTTTGA-CCCTAAACTTTCTTT
*
109696466 AAATTTCATTTTAACCCTAAA-TTT-TTT
1 AAATTTCATTTTGACCCTAAACTTTCTTT
109696493 AAA
1 AAA
109696496 AATTACATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 7 0.14
30 35 0.69
31 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:109696732 original size:14 final size:14
Alignment explanation
Indices: 109696715--109696761 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
109696705 AAAAAGAGCA
109696715 AAAAAAATTCCAGC
1 AAAAAAATTCCAGC
109696729 AAAAAAATTCCA--
1 AAAAAAATTCCAGC
*
109696741 AAAAAAATTTCAGC
1 AAAAAAATTCCAGC
109696755 AAAAAAA
1 AAAAAAA
109696762 ACTAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.37
14 19 0.63
ACGTcount: A:0.66, C:0.15, G:0.04, T:0.15
Consensus pattern (14 bp):
AAAAAAATTCCAGC
Found at i:109696733 original size:26 final size:26
Alignment explanation
Indices: 109696704--109696771 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
109696694 TCCATTGGAG
*
109696704 AAAAAAGAGCAAAAAAAATTCCAGCA
1 AAAAAAGACCAAAAAAAATTCCAGCA
** *
109696730 AAAAAATTCCAAAAAAAATTTCAGCA
1 AAAAAAGACCAAAAAAAATTCCAGCA
*
109696756 AAAAAA-ACTAAAAAAA
1 AAAAAAGACCAAAAAAA
109696772 GGAACTTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 8 0.22
26 28 0.78
ACGTcount: A:0.69, C:0.13, G:0.06, T:0.12
Consensus pattern (26 bp):
AAAAAAGACCAAAAAAAATTCCAGCA
Found at i:109697611 original size:25 final size:24
Alignment explanation
Indices: 109697553--109697611 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
109697543 TTTTTATAAC
109697553 TATATTA-TGTACATATATATATA
1 TATATTATTGTACATATATATATA
* *
109697576 TATATTTTTGTACATATCAT-TATTT
1 TATATTATTGTACATAT-ATATA-TA
109697601 TATATTATTGT
1 TATATTATTGT
109697612 TGTAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 6 0.20
24 11 0.37
25 13 0.43
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (24 bp):
TATATTATTGTACATATATATATA
Found at i:109709771 original size:72 final size:72
Alignment explanation
Indices: 109709654--109710094 Score: 473
Period size: 72 Copynumber: 6.1 Consensus size: 72
109709644 TGTTACTTCC
* *
109709654 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
*
109709719 AATTTAT
66 AATTTCT
* *
109709726 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 GTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
109709791 AATTTCT
66 AATTTCT
* * * *
109709798 GTTTTCAAAATTCAATTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 GTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
109709863 AATTTCT
66 AATTTCT
* *
109709870 GTTTTTCAAAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
1 G-TTTTC------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
109709935 T-ATGTC----T-T
59 TAATTTCAATTTCT
**** ** *
109709943 -TAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 GTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
109710007 AATTTCT
66 AATTTCT
* * *** * ** *
109710014 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTTACACGCCAAGGTAT
1 GTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAA
*
109710079 TTTCAATTTCC
62 TTTCAATTTCT
109710090 GTTTT
1 GTTTT
109710095 TCAATTTCTA
Statistics
Matches: 320, Mismatches: 31, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
65 48 0.15
66 4 0.01
70 1 0.00
71 2 0.01
72 141 0.44
73 6 0.02
74 40 0.12
76 25 0.08
78 3 0.01
79 50 0.16
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Consensus pattern (72 bp):
GTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
AATTTCT
Found at i:109709983 original size:65 final size:65
Alignment explanation
Indices: 109709879--109710001 Score: 201
Period size: 65 Copynumber: 1.9 Consensus size: 65
109709869 TGTTTTTCAA
*
109709879 AAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATGTCTTT
1 AAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATGTCTTT
* ** *
109709944 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
109710002 ATTTCAATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (65 bp):
AAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATGTCTTT
Found at i:109710087 original size:76 final size:74
Alignment explanation
Indices: 109709946--109710088 Score: 223
Period size: 74 Copynumber: 1.9 Consensus size: 74
109709936 ATGTCTTTAA
* **
109709946 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCAAGGTAATTTCAATT
109710011 TCTGTTGTC
66 TCTGTTGTC
* *
109710020 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTTACACGCCAAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCAAGGTAATTTCAA
109710085 TTTC
64 TTTC
109710089 CGTTTTTCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 41 0.66
76 21 0.34
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCAAGGTAATTTCAATT
TCTGTTGTC
Found at i:109710287 original size:14 final size:14
Alignment explanation
Indices: 109710249--109710284 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
109710239 TGTCGAGATA
109710249 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
109710263 TTTTCAAAATCTG-
1 TTTTCAAAATCTGT
109710276 TTTTCAAAA
1 TTTTCAAAA
109710285 ATCAACTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:109710372 original size:166 final size:163
Alignment explanation
Indices: 109710115--109710519 Score: 460
Period size: 165 Copynumber: 2.5 Consensus size: 163
109710105 CCTTTCAAAA
* * * * *** *
109710115 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGCTCACGTGCTGAGCTA---TTTTC
* *
109710179 AA-TT-TATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGTCACATGT
62 AATTTCTATTTTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAG-CTCGTCA-ATGT
* * * * *
109710242 CGA-GATATTTTCAA-AATCTGTTTTTCAAAATCTGTTTTC
125 CGACGAGA-GTTCAATAAGC-CTTTTGCAAAATCTGTTTTC
109710281 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
* * ** * * *
109710346 TCTATTTTTTTTAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTACG
66 TCTATTTTTTTCAAAAAAA-TCAACTCACATTGCGAGAGGTGAGTTGAGCTCGTCAATGTCGACG
* * *
109710411 AGAGTTGAATTGAGCCTTTTGCAAATTCTGTTTTC
130 AGAGTTCAA-TAAGCCTTTTGCAAAATCTGTTTTC
109710446 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
109710511 TCTATTTTT
66 TCTATTTTT
109710520 AATATCTAGT
Statistics
Matches: 207, Mismatches: 25, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
163 7 0.03
164 11 0.05
165 113 0.55
166 73 0.35
167 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (163 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
TCTATTTTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCTCGTCAATGTCGACGA
GAGTTCAATAAGCCTTTTGCAAAATCTGTTTTC
Found at i:109710389 original size:80 final size:78
Alignment explanation
Indices: 109710276--109710519 Score: 229
Period size: 80 Copynumber: 3.0 Consensus size: 78
109710266 TCAAAATCTG
*
109710276 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
1 TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
109710341 CAATTTCTATTTT
66 CAATTTCTATTTT
* * *** ** * * *
109710354 TTTTAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTC-TACGAGAGTTG
1 TTTT-AAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGC-CTTGGCTCACGTGC-TGAGCT-
** ** * *
109710418 AATTGAGCCTTTTGCAAATTCTG
61 -ATT-TTCAATTT-C-TATT-TT
*
109710441 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
1 TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
109710506 CAATTTCTATTTT
66 CAATTTCTATTTT
109710519 T
1 T
109710520 AATATCTAGT
Statistics
Matches: 121, Mismatches: 34, Indels: 22
0.68 0.19 0.12
Matches are distributed among these distances:
78 6 0.05
79 8 0.07
80 32 0.26
81 12 0.10
82 3 0.02
83 3 0.02
84 12 0.10
85 32 0.26
86 8 0.07
87 5 0.04
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (78 bp):
TTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
CAATTTCTATTTT
Found at i:109710801 original size:30 final size:29
Alignment explanation
Indices: 109710767--109710850 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
109710757 GCATTTTGAC
*
109710767 CCCTAAACTTTCTTTAAATTTCACTTAGAA
1 CCCTAAACTTTCTTTAAATTACA-TTAGAA
* **
109710797 CCCTAAACTTTCCTTAAATTACATTTTAA
1 CCCTAAACTTTCTTTAAATTACATTAGAA
109710826 CCCTAAA-TTT-TTTAAAAATTACATT
1 CCCTAAACTTTCTTT--AAATTACATT
109710851 TAGCCCCAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.04
28 3 0.06
29 21 0.45
30 21 0.45
ACGTcount: A:0.36, C:0.21, G:0.01, T:0.42
Consensus pattern (29 bp):
CCCTAAACTTTCTTTAAATTACATTAGAA
Found at i:109711088 original size:15 final size:15
Alignment explanation
Indices: 109711068--109711119 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
109711058 AAAAAAGAGT
109711068 AAAAAAAATTCCAGC
1 AAAAAAAATTCCAGC
109711083 AAAAAAAATTCCA--
1 AAAAAAAATTCCAGC
* *
109711096 AAAAAAATTTTTCAGC
1 AAAAAAA-ATTCCAGC
109711112 AAAAAAAA
1 AAAAAAAA
109711120 ACCAAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 13 0.42
16 7 0.23
ACGTcount: A:0.65, C:0.13, G:0.04, T:0.17
Consensus pattern (15 bp):
AAAAAAAATTCCAGC
Found at i:109711101 original size:29 final size:28
Alignment explanation
Indices: 109711068--109711130 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
109711058 AAAAAAGAGT
*
109711068 AAAAAAAATTCCAGCAAAAAAAATTCCAA
1 AAAAAAAATTCCAGCAAAAAAAA-ACCAA
** *
109711097 AAAAAATTTTTCAGCAAAAAAAAACCAA
1 AAAAAAAATTCCAGCAAAAAAAAACCAA
109711125 AAAAAA
1 AAAAAA
109711131 GGAACGTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.68, C:0.14, G:0.03, T:0.14
Consensus pattern (28 bp):
AAAAAAAATTCCAGCAAAAAAAAACCAA
Found at i:109716321 original size:63 final size:63
Alignment explanation
Indices: 109716222--109716410 Score: 288
Period size: 63 Copynumber: 3.0 Consensus size: 63
109716212 GTGTAGATTT
* *
109716222 TGCTTGCAGGAAATAGACCTCTAAAAGGATTAGGATTAATTTCCTACTAATATAAATGCAACA
1 TGCTTGCAGGGAATAGACCTCTAACAGGATTAGGATTAATTTCCTACTAATATAAATGCAACA
* *
109716285 TGCTTGCAGGGAATAGACCTCTAACAGGATTGGGATTAATTTCCTACTAATATAAATGCAGCA
1 TGCTTGCAGGGAATAGACCTCTAACAGGATTAGGATTAATTTCCTACTAATATAAATGCAACA
* * * * * *
109716348 TGCTTGCAGCGAATAGACCTCTAACAGGTTTAGGACTAATTTCCTATTCATATAAATACAACA
1 TGCTTGCAGGGAATAGACCTCTAACAGGATTAGGATTAATTTCCTACTAATATAAATGCAACA
109716411 CCTTGAATTA
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 114 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (63 bp):
TGCTTGCAGGGAATAGACCTCTAACAGGATTAGGATTAATTTCCTACTAATATAAATGCAACA
Found at i:109718287 original size:21 final size:21
Alignment explanation
Indices: 109718244--109718289 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
109718234 AGAGATAATA
109718244 AATA-GATAAATAAATAAAAT
1 AATATGATAAATAAATAAAAT
109718264 AATATGATAAATAAATAAAAT
1 AATATGATAAATAAATAAAAT
109718285 AATAT
1 AATAT
109718290 TCTAATTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (21 bp):
AATATGATAAATAAATAAAAT
Found at i:109718756 original size:107 final size:107
Alignment explanation
Indices: 109718557--109718764 Score: 326
Period size: 107 Copynumber: 1.9 Consensus size: 107
109718547 CAACTTTAGG
* * * *
109718557 GAGATAAGATTCGCCATGATGACTTCAATCCGTCCCACTACAATTTTAGGGGTATAAGATTTGTG
1 GAGATAAGATTCGCCATGATAACTTCAATCCGTCCCACTACAACTTCAGGGGTATAAGATTTGCG
*
109718622 GCTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTGA
66 GCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGA
* * *
109718664 GAGATAAGATTTGTCATGATAACTTCAATCCGTCCCACTACAACTTCAGGGGTATAGGATTTGCG
1 GAGATAAGATTCGCCATGATAACTTCAATCCGTCCCACTACAACTTCAGGGGTATAAGATTTGCG
* *
109718729 GCTTTAATCTGCTCCACTGTAATTTTAGGGAGATAA
66 GCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAA
109718765 AATTCACCAT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 91 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (107 bp):
GAGATAAGATTCGCCATGATAACTTCAATCCGTCCCACTACAACTTCAGGGGTATAAGATTTGCG
GCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGA
Found at i:109721925 original size:37 final size:37
Alignment explanation
Indices: 109721862--109721970 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
109721852 AGCTCAGACG
* * *
109721862 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
109721899 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
109721936 AAATCTTCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
109721971 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:109722244 original size:48 final size:48
Alignment explanation
Indices: 109722116--109722300 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
109722106 GCACATCGCC
*
109722116 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
109722164 TATGTATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TA--CATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
109722214 TACATACTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
109722262 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
109722301 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
48 80 0.65
49 2 0.02
50 42 0.34
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:109722305 original size:98 final size:97
Alignment explanation
Indices: 109722116--109722299 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
109722106 GCACATCGCC
* *
109722116 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATGTATATTTCACATT
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA-GCATATTTCACATT
109722181 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
*
109722214 TACATACTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA-CATATTTCACATT-
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAGCATATTTCACATTG
*
109722277 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
109722300 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 32 0.40
98 48 0.59
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (97 bp):
TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAGCATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:109722349 original size:47 final size:47
Alignment explanation
Indices: 109722270--109722463 Score: 264
Period size: 47 Copynumber: 4.1 Consensus size: 47
109722260 CATACATATT
* * * * *
109722270 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
109722317 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
109722364 TCACATTGGCCATTCGGCCTTATCAC-CTATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAC-ATATGCATGTTCACATTCA
* * * **
109722411 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
109722458 TCACAT
1 TCACAT
109722464 AAAATTCCTA
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 130 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:109722380 original size:94 final size:94
Alignment explanation
Indices: 109722223--109722463 Score: 281
Period size: 94 Copynumber: 2.6 Consensus size: 94
109722213 ATACATACTT
* * * *
109722223 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
109722285 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
109722318 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* * *
109722383 TTATCACCTATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
109722412 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
109722464 AAAATTCCTA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 92 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:109729222 original size:12 final size:12
Alignment explanation
Indices: 109729205--109729234 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
109729195 AGGGTAAGAG
109729205 ATAATAAATAAA
1 ATAATAAATAAA
109729217 ATAATAAATAAA
1 ATAATAAATAAA
109729229 ATAATA
1 ATAATA
109729235 TTCTAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
ATAATAAATAAA
Found at i:109731260 original size:21 final size:21
Alignment explanation
Indices: 109731236--109731303 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
109731226 AACAATCACT
109731236 TAAAACATAAAAGTAGCAATA
1 TAAAACATAAAAGTAGCAATA
* * * *
109731257 T-AAA-AGAAAATTAAGAAAAAA
1 TAAAACATAAAAGT-AG-CAATA
109731278 TAAAACATAAAAGTAGCAATA
1 TAAAACATAAAAGTAGCAATA
109731299 TAAAA
1 TAAAA
109731304 GAAAATTAAG
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
19 6 0.17
20 5 0.14
21 13 0.37
22 5 0.14
23 6 0.17
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (21 bp):
TAAAACATAAAAGTAGCAATA
Found at i:109731283 original size:42 final size:42
Alignment explanation
Indices: 109731236--109731319 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
109731226 AACAATCACT
109731236 TAAAACATAAAAGTAGCAATATAAAAGAAAATTAAGAAAAAA
1 TAAAACATAAAAGTAGCAATATAAAAGAAAATTAAGAAAAAA
109731278 TAAAACATAAAAGTAGCAATATAAAAGAAAATTAAGAAAAAA
1 TAAAACATAAAAGTAGCAATATAAAAGAAAATTAAGAAAAAA
109731320 GAGACAAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.17
Consensus pattern (42 bp):
TAAAACATAAAAGTAGCAATATAAAAGAAAATTAAGAAAAAA
Found at i:109732145 original size:18 final size:18
Alignment explanation
Indices: 109732111--109732145 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
109732101 AAATAATTCG
* *
109732111 AGTTATTTGAGTTAATTA
1 AGTTATTTGAATCAATTA
109732129 AGTTATTTGAATCAATT
1 AGTTATTTGAATCAATT
109732146 CGAATAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (18 bp):
AGTTATTTGAATCAATTA
Found at i:109733337 original size:24 final size:23
Alignment explanation
Indices: 109733310--109733410 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 23
109733300 ATAATTTAGT
109733310 AATATTTATATTTTAGTATTTTTA
1 AATATTTATATTTTA-TATTTTTA
109733334 AATATTTATAATTTTCAATATTTTCTA
1 AATATTTAT-ATTTT--ATATTTT-TA
* *
109733361 AAGTGTTTTTATTTT-TATTTTTA
1 AA-TATTTATATTTTATATTTTTA
* *
109733384 TAGTATTCTAGTATTATATAATTTTTA
1 -AATATT-TA-TATTTTAT-ATTTTTA
109733411 TAGCATTATA
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
23 5 0.08
24 17 0.28
25 10 0.16
26 7 0.11
27 17 0.28
28 5 0.08
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (23 bp):
AATATTTATATTTTATATTTTTA
Found at i:109733348 original size:16 final size:17
Alignment explanation
Indices: 109733293--109733356 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 17
109733283 ATTTTAAATT
109733293 TTTTATAATAATTTAGTAA
1 TTTTA-AAT-ATTTAGTAA
* *
109733312 TATTTATAT-TTTAGTAT
1 T-TTTAAATATTTAGTAA
109733329 TTTTAAATATTTA-TAA
1 TTTTAAATATTTAGTAA
*
109733345 TTTTCAATATTT
1 TTTTAAATATTT
109733357 TCTAAAGTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 19 0.50
17 12 0.32
19 3 0.08
20 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTTAAATATTTAGTAA
Found at i:109733787 original size:30 final size:29
Alignment explanation
Indices: 109733732--109733832 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
109733722 TTCTGGCGAC
* * * *
109733732 TGCTGTCTGCTACTATTTTGGTATTCAAT
1 TGCTGGCTGCTGCCATTTTGCTATTCAAT
*
109733761 TGCTGGCTGTTGCCATTTTTGCTATTCAAT
1 TGCTGGCTGCTGCCA-TTTTGCTATTCAAT
*
109733791 TACTGGCTGCTGCCATTTTGCTATTCAAT
1 TGCTGGCTGCTGCCATTTTGCTATTCAAT
* *
109733820 TGTTGGTTGCTGC
1 TGCTGGCTGCTGC
109733833 TAAACAATTG
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 35 0.57
30 26 0.43
ACGTcount: A:0.14, C:0.20, G:0.21, T:0.46
Consensus pattern (29 bp):
TGCTGGCTGCTGCCATTTTGCTATTCAAT
Found at i:109734005 original size:3 final size:3
Alignment explanation
Indices: 109733997--109734037 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
109733987 TTTTCACAAT
109733997 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
109734038 TGAATCATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:109735156 original size:31 final size:31
Alignment explanation
Indices: 109735118--109735180 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
109735108 TCTGAAGAAG
109735118 AGGCTTATAATCTTTATAATCAATTTGCTTT
1 AGGCTTATAATCTTTATAATCAATTTGCTTT
*
109735149 AGGCTTATAATCTTTATAATCAGTTTGCTTT
1 AGGCTTATAATCTTTATAATCAATTTGCTTT
109735180 A
1 A
109735181 AGGGATTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.48
Consensus pattern (31 bp):
AGGCTTATAATCTTTATAATCAATTTGCTTT
Found at i:109735740 original size:33 final size:33
Alignment explanation
Indices: 109735702--109735765 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
109735692 AATGATGAGA
* *
109735702 TTTGTGAATGGTGTTATGAACTCGACCAAGATT
1 TTTGTGAATGGTGATATGAAATCGACCAAGATT
* *
109735735 TTTGTGAATGGTGATGTGAAATCGACGAAGA
1 TTTGTGAATGGTGATATGAAATCGACCAAGA
109735766 AATTGGTGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (33 bp):
TTTGTGAATGGTGATATGAAATCGACCAAGATT
Found at i:109735775 original size:33 final size:33
Alignment explanation
Indices: 109735705--109735775 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
109735695 GATGAGATTT
* * ** *
109735705 GTGAATGGTGTTATGAACTCGACCAAGATTTTT
1 GTGAATGGTGATATGAAATCGACCAAGAAATTG
* *
109735738 GTGAATGGTGATGTGAAATCGACGAAGAAATTG
1 GTGAATGGTGATATGAAATCGACCAAGAAATTG
109735771 GTGAA
1 GTGAA
109735776 GCGGAATACA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (33 bp):
GTGAATGGTGATATGAAATCGACCAAGAAATTG
Found at i:109736197 original size:132 final size:131
Alignment explanation
Indices: 109735856--109736197 Score: 435
Period size: 127 Copynumber: 2.6 Consensus size: 131
109735846 TTGGAATTTT
* * *
109735856 AGGGATTTATGATAAAAAATTAATTAAATGGGGTGTGAATGACATGTAAATATTTGCTAACATGT
1 AGGGATTTATGATAAAAAATTAATTAAATGAGGTGTGAATGA-ATGTAAAAATTAGCTAACATGT
* * * *
109735921 CATTAAATGATTGGAAA-GGACTAGAAATGACGTGGCATCGCTGTTTCATACAATCCTTTCTCAT
65 TATTAAATGATTGGAAAGGGACTAGAAATGACGTGGCATCACTATTTCATACAATCCTTTCCCAT
109735985 TA
130 TA
* * * *
109735987 AGGGATTTATGATTAAAAATTAATCAAACGAGGTGTGAATGAA-G--AAAATTAGCTGACATGTT
1 AGGGATTTATGATAAAAAATTAATTAAATGAGGTGTGAATGAATGTAAAAATTAGCTAACATGTT
* ** * *
109736049 ATTAAATGATTGGAAAGGGA-T-GTAGATGACGTGGTGTCACTATTTGATACAATCTTTTCCCAT
66 ATTAAATGATTGGAAAGGGACTAG-AAATGACGTGGCATCACTATTTCATACAATCCTTTCCCAT
109736112 TA
130 TA
* * *
109736114 AGGGATTTATAGCTAAAAAATTAATTAAATGAGGTGTGAATGATATGTAAAAATTAGTTCACATG
1 AGGGATTTAT-GATAAAAAATTAATTAAATGAGGTGTGAATGA-ATGTAAAAATTAGCTAACATG
109736179 TTATTAAATGATTGGAAAG
64 TTATTAAATGATTGGAAAG
109736198 ATGTGGGGTC
Statistics
Matches: 182, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
126 1 0.01
127 75 0.41
128 31 0.17
129 2 0.01
130 2 0.01
131 38 0.21
132 33 0.18
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.33
Consensus pattern (131 bp):
AGGGATTTATGATAAAAAATTAATTAAATGAGGTGTGAATGAATGTAAAAATTAGCTAACATGTT
ATTAAATGATTGGAAAGGGACTAGAAATGACGTGGCATCACTATTTCATACAATCCTTTCCCATT
A
Found at i:109745390 original size:46 final size:46
Alignment explanation
Indices: 109745340--109745515 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
109745330 TGGTTGAGCA
109745340 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
109745386 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
109745431 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
109745479 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
109745516 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:109745496 original size:93 final size:93
Alignment explanation
Indices: 109745337--109745508 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
109745327 GGATGGTTGA
* *
109745337 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109745402 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
109745430 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109745495 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
109745509 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:109751912 original size:16 final size:17
Alignment explanation
Indices: 109751891--109751923 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
109751881 GATCGGATCT
109751891 AAACGTCGAAG-CATCG
1 AAACGTCGAAGACATCG
*
109751907 AAACGTGGAAGACATCG
1 AAACGTCGAAGACATCG
109751924 TGAACCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.21, G:0.27, T:0.12
Consensus pattern (17 bp):
AAACGTCGAAGACATCG
Found at i:109757895 original size:40 final size:39
Alignment explanation
Indices: 109757784--109757934 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
109757774 ATAATCACGT
* * *
109757784 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
109757824 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
109757864 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
109757904 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
109757935 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:109757918 original size:80 final size:79
Alignment explanation
Indices: 109757784--109757934 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
109757774 ATAATCACGT
*
109757784 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
109757849 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
109757864 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
109757927 CCGGATAT
64 CCGGATAT
109757935 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:109766273 original size:27 final size:27
Alignment explanation
Indices: 109766234--109766295 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
109766224 TAGTTGAACT
* *
109766234 ATGGTAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAAATGATAAAGTGTGCCAAAC
*
109766261 ATGGCAAAATGATAAAGTGTGCCAAAT
1 ATGGCAAAATGATAAAGTGTGCCAAAC
*
109766288 ATGACAAA
1 ATGGCAAA
109766296 GTGAAATGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (27 bp):
ATGGCAAAATGATAAAGTGTGCCAAAC
Found at i:109787013 original size:53 final size:53
Alignment explanation
Indices: 109786834--109787037 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
109786824 AGGGTTTAAG
* * * * * * *
109786834 GATACCAAGTAAGACTATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * *
109786888 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAATTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGGCAAA
* * * *
109786943 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* * *
109786996 GATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
109787038 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 47 0.39
54 33 0.27
55 41 0.34
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:109792413 original size:16 final size:16
Alignment explanation
Indices: 109792392--109792423 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
109792382 TACATGGGAG
109792392 CCTGAAGAGGTTATGC
1 CCTGAAGAGGTTATGC
109792408 CCTGAAGAGGTTATGC
1 CCTGAAGAGGTTATGC
109792424 GAAAACAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (16 bp):
CCTGAAGAGGTTATGC
Found at i:109793873 original size:53 final size:53
Alignment explanation
Indices: 109793694--109793900 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 53
109793684 ATTAGGGTTT
* * * *
109793694 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * *
109793748 AAGGAAATCATGTAAGAGCATGTCAAGACATGGCATTGATAAATTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGGC
* * * *
109793803 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
109793856 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
109793901 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 48 0.39
54 33 0.27
55 41 0.34
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:109795330 original size:27 final size:27
Alignment explanation
Indices: 109795295--109795360 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
109795285 TAGTTGAATT
*
109795295 ATGGTAAAGTGATAAAGTGTGCCAAAC
1 ATGGAAAAGTGATAAAGTGTGCCAAAC
* *
109795322 ATGGCAAAGTGATAAAGTGTGCCAAAT
1 ATGGAAAAGTGATAAAGTGTGCCAAAC
109795349 ATGGAAAAGTGA
1 ATGGAAAAGTGA
109795361 AATGTGACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.21
Consensus pattern (27 bp):
ATGGAAAAGTGATAAAGTGTGCCAAAC
Found at i:109802498 original size:42 final size:44
Alignment explanation
Indices: 109802439--109802526 Score: 135
Period size: 42 Copynumber: 2.0 Consensus size: 44
109802429 GACCACTTTA
* *
109802439 ACCCAACCACTGATGGTGGGGTTTGGGTCAATATCT-A-CTGTG
1 ACCCAACCACTGATGGTGGGGGTTAGGTCAATATCTAATCTGTG
*
109802481 ACCCAACCACTGATGGTGGGGGTTAGGTCATTATCTAATCTGTG
1 ACCCAACCACTGATGGTGGGGGTTAGGTCAATATCTAATCTGTG
109802525 AC
1 AC
109802527 TTATCAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 33 0.80
43 1 0.02
44 7 0.17
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (44 bp):
ACCCAACCACTGATGGTGGGGGTTAGGTCAATATCTAATCTGTG
Found at i:109803930 original size:63 final size:63
Alignment explanation
Indices: 109803831--109803949 Score: 202
Period size: 63 Copynumber: 1.9 Consensus size: 63
109803821 AGGTGTTGTG
*
109803831 TTTATATGAATAGGAAATTAATCCTAGTCCTGTTAGAGGTCTATTCCCTGCAAGCATGTTGCA
1 TTTATATGAATAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGTTGCA
* * *
109803894 TTTATATTAGTAGGAAATTAATCCTAATCCTTTTAGAGGTCTATTCCCTGCAAGCA
1 TTTATATGAATAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCA
109803950 AAATCTACAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (63 bp):
TTTATATGAATAGGAAATTAATCCTAATCCTGTTAGAGGTCTATTCCCTGCAAGCATGTTGCA
Found at i:109805202 original size:41 final size:41
Alignment explanation
Indices: 109805125--109805203 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
109805115 GTTTACAATA
* * * * *
109805125 AAACGCCGCAAAAAATTAAGCAATAGCGGTGTTTTTGGTCC
1 AAACGCAGCAAAAAACTAAGCAATAACGGCGCTTTTGGTCC
* *
109805166 AAACGCAGCTAAAAACTGAGCAATAACGGCGCTTTTGG
1 AAACGCAGCAAAAAACTAAGCAATAACGGCGCTTTTGG
109805204 AAAAACACCG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (41 bp):
AAACGCAGCAAAAAACTAAGCAATAACGGCGCTTTTGGTCC
Found at i:109805489 original size:22 final size:21
Alignment explanation
Indices: 109805472--109805512 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
109805462 ATTTTAAGGT
*
109805472 TTATGGGTTATGGGTTTAGGGA
1 TTATGGGTTAT-GGTTTAAGGA
*
109805494 TTATGGTTTATGGTTTAAG
1 TTATGGGTTATGGTTTAAG
109805513 TGTTGGGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (21 bp):
TTATGGGTTATGGTTTAAGGA
Found at i:109805503 original size:14 final size:15
Alignment explanation
Indices: 109805469--109805506 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
109805459 ACTATTTTAA
109805469 GGTTTATGGGTTATG
1 GGTTTATGGGTTATG
109805484 GGTTTA-GGGATTAT-
1 GGTTTATGGG-TTATG
109805498 GGTTTATGG
1 GGTTTATGG
109805507 TTTAAGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (15 bp):
GGTTTATGGGTTATG
Found at i:109811430 original size:24 final size:24
Alignment explanation
Indices: 109811373--109811419 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
109811363 AACCATGATG
*
109811373 GTTAATTTTTACGAGTTTTGTAGT
1 GTTAATTATTACGAGTTTTGTAGT
109811397 GTTAATTATTACGAGTTTTGTAG
1 GTTAATTATTACGAGTTTTGTAG
109811420 CTTCTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.51
Consensus pattern (24 bp):
GTTAATTATTACGAGTTTTGTAGT
Found at i:109811587 original size:24 final size:22
Alignment explanation
Indices: 109811560--109811603 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
109811550 AATTTCAAAA
109811560 ATAAAACATAATATAATATTTATC
1 ATAAAA-ATAA-ATAATATTTATC
*
109811584 ATAAAAATAAATATTATTTA
1 ATAAAAATAAATAATATTTA
109811604 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAAAATAAATAATATTTATC
Found at i:109811677 original size:43 final size:43
Alignment explanation
Indices: 109811629--109811898 Score: 249
Period size: 43 Copynumber: 6.3 Consensus size: 43
109811619 AGATATGTTC
* * *
109811629 TTTAGCAGCGTTT-TCGGAAAAAGCACCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGTAGG-AAAAGCGCCGCTAAAGGTCATGGTT
* * *
109811672 TTTAGCGGCGTTTGTAAGAAAAGCGCTGCTAAAGGTCATGATT
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
* * * * *
109811715 TTTAACAGCGTTTGTAGGAAAAGCGTCGCTAAAAGTCATGGTC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
* ** ** * *
109811758 TTTAGCGGCTTTTGCGGGAAAAGTACCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
* * *
109811801 TTTAGCGGCATTT-TTGGGAAAGCGCCGCTAAAGGTCAT-GTT
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
* * * * ***
109811842 CTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTACAGATCATGACC
1 -TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
109811886 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
109811899 TTTTTCATAA
Statistics
Matches: 182, Mismatches: 41, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.01
42 31 0.17
43 147 0.81
44 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGGTT
Found at i:109811779 original size:86 final size:85
Alignment explanation
Indices: 109811627--109811899 Score: 303
Period size: 86 Copynumber: 3.2 Consensus size: 85
109811617 AAAGATATGT
* * * **
109811627 TCTTTAGCAGCGTTTTCGGAAAAAGCACCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTAAGAA
1 TCTTTAGCAGCGTTTTAGG-AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* *
109811692 AAGCGCTGCTAAAGGTCATGA
65 AAGTGCCGCTAAAGGTCATGA
* * * * * *
109811713 TTTTTAACAGCGTTTGTAGGAAAAGCGTCGCTAAAAGTCATGGTCTTTAGCGGCTTTTGCGGGAA
1 TCTTTAGCAGCGTTT-TAGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* * *
109811778 AAGTACCGTTAAAGGTCATGG
65 AAGTGCCGCTAAAGGTCATGA
* * * * *
109811799 TCTTTAGCGGCATTTTTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAA
1 TCTTTAGCAGCGTTTTAGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAA
* *
109811864 AGTGCCGCTACAGATCATGA
66 AGTGCCGCTAAAGGTCATGA
* *
109811884 CCTTTAGCGGCGTTTT
1 TCTTTAGCAGCGTTTT
109811900 TTTTCATAAA
Statistics
Matches: 152, Mismatches: 34, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
85 72 0.47
86 77 0.51
87 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (85 bp):
TCTTTAGCAGCGTTTTAGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAA
AGTGCCGCTAAAGGTCATGA
Done.