Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 379 of 444
Found at i:110120041 original size:3 final size:3
Alignment explanation
Indices: 110120033--110120141 Score: 109
Period size: 3 Copynumber: 36.3 Consensus size: 3
110120023 CTCTACTATT
110120033 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * * *
110120081 T-A TAA -AA CCA TAA CAA TTAA TAA TTA TAA TAA TCAA TTA T-A TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA T-AA TAA TAA TAA
110120125 T-A TAA TATA TATA TAA T
1 TAA TAA TA-A TA-A TAA T
110120142 CTAAATAAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
2 8 0.09
3 71 0.78
4 12 0.13
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:110127703 original size:31 final size:26
Alignment explanation
Indices: 110127636--110127745 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
110127626 TGATACAAAT
110127636 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110127662 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
110127688 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
* *
110127714 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110127740 TGATAA
1 TGATAA
110127746 GAATTTCATG
Statistics
Matches: 81, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
25 1 0.01
26 79 0.98
27 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:110129258 original size:26 final size:26
Alignment explanation
Indices: 110129229--110129281 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
110129219 TTTACAGTTT
*
110129229 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
110129255 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
110129281 T
1 T
110129282 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:110129320 original size:22 final size:20
Alignment explanation
Indices: 110129293--110129332 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
110129283 CATGTTTGAC
110129293 TGTTGTTATTTATTGCATGCCA
1 TGTTGTTA-TTATTG-ATGCCA
110129315 TGTTGTTATTATTGATGC
1 TGTTGTTATTATTGATGC
110129333 ATGGGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.17, C:0.10, G:0.20, T:0.53
Consensus pattern (20 bp):
TGTTGTTATTATTGATGCCA
Found at i:110133434 original size:26 final size:26
Alignment explanation
Indices: 110133405--110133514 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
110133395 TGATACAAAT
*
110133405 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110133431 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
110133457 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
110133483 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110133509 TGATAA
1 TGATAA
110133515 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:110138455 original size:16 final size:16
Alignment explanation
Indices: 110138434--110138471 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
110138424 ACTTGTTATG
*
110138434 AAATAAATAATAAAGA
1 AAATAAATAACAAAGA
*
110138450 AAATAAATAACAAAGG
1 AAATAAATAACAAAGA
110138466 AAATAA
1 AAATAA
110138472 GAGAGTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (16 bp):
AAATAAATAACAAAGA
Found at i:110139395 original size:18 final size:18
Alignment explanation
Indices: 110139374--110139414 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
110139364 AATACTTGAG
110139374 TAAATCA-AAATTAAAAAT
1 TAAATCAGAAA-TAAAAAT
*
110139392 TAAATTAGAAATAAAAAT
1 TAAATCAGAAATAAAAAT
110139410 TAAAT
1 TAAAT
110139415 TTTGATAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAATCAGAAATAAAAAT
Found at i:110146744 original size:17 final size:17
Alignment explanation
Indices: 110146701--110146745 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
110146691 AAACAATAAC
110146701 AATTTTTTTAAAAATCCA
1 AATTTTTTTAAAAAT-CA
110146719 AATTATTTTTAAAAAT-A
1 AATT-TTTTTAAAAATCA
*
110146736 AATCTTTTTA
1 AATTTTTTTA
110146746 GATTTGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 6 0.24
17 4 0.16
18 4 0.16
19 11 0.44
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTTTTTTAAAAATCA
Found at i:110150155 original size:15 final size:15
Alignment explanation
Indices: 110150137--110150171 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
110150127 AACCGTGTGT
*
110150137 GACACACGGCCATGC
1 GACACACGACCATGC
110150152 GACACACGACCATGC
1 GACACACGACCATGC
110150167 GACAC
1 GACAC
110150172 GGCCGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.40, G:0.23, T:0.06
Consensus pattern (15 bp):
GACACACGACCATGC
Found at i:110151051 original size:18 final size:18
Alignment explanation
Indices: 110151036--110151082 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
110151026 ATTTATTAGT
110151036 ATATTAATTATTATTATA
1 ATATTAATTATTATTATA
*
110151054 ATTTTAATTATTATTATA
1 ATATTAATTATTATTATA
110151072 AT-TATAATTAT
1 ATAT-TAATTAT
110151083 GGTTAATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTAATTATTATTATA
Found at i:110151081 original size:6 final size:6
Alignment explanation
Indices: 110151040--110151082 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
110151030 ATTAGTATAT
* * *
110151040 TAATTA TTATTA TAATTT TAATTA TTATTA TAATTA TAATTA T
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA T
110151083 GGTTAATGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (6 bp):
TAATTA
Found at i:110155368 original size:23 final size:23
Alignment explanation
Indices: 110155333--110155382 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
110155323 AGTTCAAAGC
*
110155333 AAATAAATTATTAAAACAT-TAA
1 AAATAAAATATTAAAACATATAA
110155355 AAATAGAAATATTAAAACATATAA
1 AAATA-AAATATTAAAACATATAA
110155379 AAAT
1 AAAT
110155383 CGGTCCAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 5 0.20
23 13 0.52
24 7 0.28
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATAAAATATTAAAACATATAA
Found at i:110165044 original size:3 final size:3
Alignment explanation
Indices: 110165036--110165094 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
110165026 GTAATAAAGA
110165036 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
110165084 AGT AAT AAT AA
1 AAT AAT AAT AA
110165095 AACAATTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:110167731 original size:13 final size:13
Alignment explanation
Indices: 110167709--110167741 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
110167699 AAGGGTTTGT
110167709 TTAT-TAAACTAA
1 TTATCTAAACTAA
110167721 TTATCTAAACTAA
1 TTATCTAAACTAA
*
110167734 TTAACTAA
1 TTATCTAA
110167742 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:110168202 original size:11 final size:11
Alignment explanation
Indices: 110168186--110168210 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
110168176 ATACATAATT
110168186 AAGAACAAATC
1 AAGAACAAATC
110168197 AAGAACAAATC
1 AAGAACAAATC
110168208 AAG
1 AAG
110168211 TATTTATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.08
Consensus pattern (11 bp):
AAGAACAAATC
Found at i:110175901 original size:18 final size:18
Alignment explanation
Indices: 110175858--110175902 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 18
110175848 AATATACATA
110175858 ACATATATATAAAAATAAT
1 ACATA-ATATAAAAATAAT
110175877 A-AGTAATATAAAAATAAT
1 ACA-TAATATAAAAATAAT
110175895 ACATAATA
1 ACATAATA
110175903 AATATTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (18 bp):
ACATAATATAAAAATAAT
Found at i:110175998 original size:14 final size:13
Alignment explanation
Indices: 110175968--110175994 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
110175958 ATGAAAGTTT
110175968 ATATGTAAAAATA
1 ATATGTAAAAATA
110175981 ATATGTAAAAATA
1 ATATGTAAAAATA
110175994 A
1 A
110175995 ATATATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (13 bp):
ATATGTAAAAATA
Found at i:110176012 original size:21 final size:20
Alignment explanation
Indices: 110175977--110176042 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
110175967 TATATGTAAA
*
110175977 AATAATATGTAAAAATAA-AT
1 AATAATATATAAAAA-AATAT
*
110175997 ATATAATATATGAAAAAATAT
1 A-ATAATATATAAAAAAATAT
* *
110176018 AATAATACATATAAAAA-AT
1 AATAATATATAAAAAAATAT
110176037 AATAAT
1 AATAAT
110176043 TTTGAGAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.21
20 16 0.41
21 15 0.38
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (20 bp):
AATAATATATAAAAAAATAT
Found at i:110176013 original size:23 final size:21
Alignment explanation
Indices: 110176004--110176042 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
110175994 AATATATAAT
110176004 ATATGAAAAAATATAATAATAC
1 ATATGAAAAAATA-AATAATAC
110176026 ATAT-AAAAAAT-AATAAT
1 ATATGAAAAAATAAATAAT
110176043 TTTGAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
ATATGAAAAAATAAATAATAC
Found at i:110176017 original size:19 final size:19
Alignment explanation
Indices: 110175993--110176042 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
110175983 ATGTAAAAAT
110175993 AAATATATAAT-ATATGAAA
1 AAATATATAATAATAT-AAA
110176012 AAATATAATAATACATATAAA
1 AAATAT-ATAATA-ATATAAA
110176033 AAATA-ATAAT
1 AAATATATAAT
110176043 TTTGAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 8 0.29
22 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AAATATATAATAATATAAA
Found at i:110176070 original size:39 final size:40
Alignment explanation
Indices: 110175993--110176070 Score: 90
Period size: 38 Copynumber: 2.0 Consensus size: 40
110175983 ATGTAAAAAT
*
110175993 AAATATATAATATATGAAAAAATATAATAATACATATAAA
1 AAATATATAATATATGAAAAAATATAATAATAAATATAAA
* *
110176033 AAATA-ATAAT-TTTGAGAAAAT-TAATATATAAATTATAA
1 AAATATATAATATATGAAAAAATATAATA-ATAAA-TATAA
110176071 TACATATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
37 5 0.15
38 13 0.39
39 10 0.30
40 5 0.15
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (40 bp):
AAATATATAATATATGAAAAAATATAATAATAAATATAAA
Found at i:110177077 original size:39 final size:39
Alignment explanation
Indices: 110177020--110177112 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
110177010 CACTGGAGTC
* *
110177020 TGCGCGCTGATGGAGCCAACGCCGGATTTTGGCATGTCT
1 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
*
110177059 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCGTGTCT
1 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
*
110177098 TGCGCGTCGATGGTG
1 TGCGCGTTGATGGTG
110177113 GCGCGATGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.12, C:0.24, G:0.37, T:0.28
Consensus pattern (39 bp):
TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
Found at i:110178527 original size:40 final size:40
Alignment explanation
Indices: 110178482--110178649 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
110178472 CGGAATATAA
*
110178482 CCGGATATAATCACGT-GCATAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
110178522 CCGGATAGAATGTTTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
110178562 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
110178602 CCGGATATAATCTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
110178642 CCGGATAT
1 CCGGATAT
110178650 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:110181394 original size:119 final size:119
Alignment explanation
Indices: 110181115--110181591 Score: 686
Period size: 119 Copynumber: 4.0 Consensus size: 119
110181105 GAGTCTGTTG
* * * * * **
110181115 GAGAACATCTGAGAGTCAAATCTACTATGTGCTTGACTTGTTTCTTGTAAACACAAGAATGTCAA
1 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
* * *
110181180 ATCATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTCT
66 ATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGTTTAGATCTG-C-TATATCT
110181237 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
1 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
*
110181302 ATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTTTAGATCTGCTATATCT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATCT
* * *
110181356 GAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAACATAAGAATACCAA
1 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
* * * *
110181421 ATCATCTTGGATCTGCTTCAGTATAATCATCTAAAGTTTGGATCTGCTATATTT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATCT
* * *
110181475 GAGAACATCTGAGAGTTAGATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAA
1 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
* * * *
110181540 ATCATCTTGGATTTGTTTCAGTATAAACATTTGAAAG-CTAGATCTGCTATAT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTTAGATCTGCTATAT
110181592 TGCGGCTTAT
Statistics
Matches: 322, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
119 216 0.67
120 4 0.01
121 30 0.09
122 72 0.22
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (119 bp):
GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATCT
Found at i:110193586 original size:18 final size:18
Alignment explanation
Indices: 110193543--110193587 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 18
110193533 AATATACATA
110193543 ACATATATATAAAAATAAT
1 ACATA-ATATAAAAATAAT
110193562 A-AGTAATATAAAAATAAT
1 ACA-TAATATAAAAATAAT
110193580 ACATAATA
1 ACATAATA
110193588 AATATTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (18 bp):
ACATAATATAAAAATAAT
Found at i:110193707 original size:40 final size:37
Alignment explanation
Indices: 110193662--110193742 Score: 92
Period size: 40 Copynumber: 2.1 Consensus size: 37
110193652 TATATGTAAA
**
110193662 AATAATATGTATAAATAAATATATAATATATGA-AAAATAT
1 AATAATACATATAAA-AAATA-ATAAT-TATGAGAAAAT-T
*
110193702 AATAATACATATAAAAAATAATAATTTTGAGAAAATT
1 AATAATACATATAAAAAATAATAATTATGAGAAAATT
110193739 AATA
1 AATA
110193743 TATAAATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
37 9 0.24
38 10 0.27
39 5 0.14
40 13 0.35
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.33
Consensus pattern (37 bp):
AATAATACATATAAAAAATAATAATTATGAGAAAATT
Found at i:110193708 original size:19 final size:19
Alignment explanation
Indices: 110193652--110193746 Score: 62
Period size: 19 Copynumber: 5.2 Consensus size: 19
110193642 AATGAAAGTT
*
110193652 TATATGTAAAA-ATAAT-A
1 TATATGAAAAATATAATAA
* *
110193669 TGTATAAATAAATAT-ATAA
1 TATATGAA-AAATATAATAA
110193688 TATATGAAAAATATAATAA
1 TATATGAAAAATATAATAA
110193707 TACATAT-AAAAA-ATAATAA
1 T--ATATGAAAAATATAATAA
*
110193726 T-TTTGAGAAAAT-TAAT-A
1 TATATGA-AAAATATAATAA
110193743 TATA
1 TATA
110193747 AATTATAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
16 2 0.03
17 8 0.13
18 20 0.33
19 22 0.36
20 5 0.08
21 4 0.07
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (19 bp):
TATATGAAAAATATAATAA
Found at i:110194761 original size:39 final size:39
Alignment explanation
Indices: 110194704--110194796 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
110194694 CACTGGAGTC
* *
110194704 TGCGCGCTGATGGAGCCAACGCCGGATTTTGGCATGTCT
1 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
*
110194743 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCGTGTCT
1 TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
*
110194782 TGCGTGTTGATGGTG
1 TGCGCGTTGATGGTG
110194797 GCGCAATGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.12, C:0.22, G:0.37, T:0.30
Consensus pattern (39 bp):
TGCGCGTTGATGGTGCCAACGCCGGATTTTGGCATGTCT
Found at i:110195411 original size:20 final size:20
Alignment explanation
Indices: 110195386--110195430 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
110195376 CAGAAAATAA
110195386 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
110195406 TTTCT-GAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
110195425 TTTCTG
1 TTTCTG
110195431 CTGTTTGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:110196830 original size:16 final size:16
Alignment explanation
Indices: 110196811--110196852 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
110196801 AATACTAGTT
110196811 AAAAT-AATAATTAATA
1 AAAATAAAT-ATTAATA
110196827 AAAATAAATATTAATA
1 AAAATAAATATTAATA
110196843 AAAATAAATA
1 AAAATAAATA
110196853 AATAACTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAAATATTAATA
Found at i:110196841 original size:20 final size:20
Alignment explanation
Indices: 110196812--110196857 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
110196802 ATACTAGTTA
*
110196812 AAATAATAATTAATAA-AAAT
1 AAATAATAA-TAAAAATAAAT
*
110196832 AAATATTAATAAAAATAAAT
1 AAATAATAATAAAAATAAAT
110196852 AAATAA
1 AAATAA
110196858 CTAACAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATAATAATAAAAATAAAT
Found at i:110197461 original size:39 final size:40
Alignment explanation
Indices: 110197384--110197463 Score: 117
Period size: 39 Copynumber: 2.0 Consensus size: 40
110197374 AACCATAAAC
* * *
110197384 AGTCTAAGCTTCAATTGCAATATTCTCCATACATATTATG
1 AGTCTAAACTTCAAGTGCAATATTCTCCATACAGATTATG
*
110197424 AGTCTAAACTTCAAGTGCAA-ATTCTCTATACAGATTATG
1 AGTCTAAACTTCAAGTGCAATATTCTCCATACAGATTATG
110197463 A
1 A
110197464 AAGCATATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 18 0.50
40 18 0.50
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (40 bp):
AGTCTAAACTTCAAGTGCAATATTCTCCATACAGATTATG
Found at i:110199090 original size:24 final size:24
Alignment explanation
Indices: 110199063--110199110 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
110199053 AGTTTAAATG
*
110199063 TTAGTTTTTGAATATATGGCCTAA
1 TTAGTTTTTGAATATATGGACTAA
110199087 TTAGTTTTTGAATATATGGACTAA
1 TTAGTTTTTGAATATATGGACTAA
110199111 AGTATGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (24 bp):
TTAGTTTTTGAATATATGGACTAA
Found at i:110204016 original size:18 final size:17
Alignment explanation
Indices: 110203993--110204042 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
110203983 ACAATTCTTT
110203993 TCTCTTCTTCTTTTTTCC
1 TCTCTTCTTCTTTTTT-C
* *
110204011 TCTCTTCATCTATTTTC
1 TCTCTTCTTCTTTTTTC
110204028 TCTTCTTCTTCTTTT
1 TC-TCTTCTTCTTTT
110204043 CCTCTATAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 3 0.11
18 24 0.89
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (17 bp):
TCTCTTCTTCTTTTTTC
Found at i:110205316 original size:28 final size:28
Alignment explanation
Indices: 110205276--110205391 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
110205266 GGAGGAAGCG
*
110205276 TTCTGGTGGCTCTTCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
110205304 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
110205332 TTCTGGTGGCCCTGCTACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
110205360 ATGTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
110205386 TTCTGG
1 TTCTGG
110205392 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.05
27 7 0.09
28 64 0.85
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:110208662 original size:12 final size:13
Alignment explanation
Indices: 110208645--110208676 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
110208635 GCAAATGTTA
110208645 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
110208657 AGTTTTGATGCAT
1 AGTTTTGATGCAT
110208670 -GTTTTGA
1 AGTTTTGA
110208677 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:110210341 original size:45 final size:45
Alignment explanation
Indices: 110210241--110210370 Score: 178
Period size: 45 Copynumber: 3.0 Consensus size: 45
110210231 CCGAGTTCAT
* * *
110210241 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
110210283 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
110210328 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
110210371 CTGTGCGATA
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
42 10 0.13
43 16 0.21
44 4 0.05
45 46 0.60
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:110214556 original size:44 final size:46
Alignment explanation
Indices: 110214502--110214719 Score: 162
Period size: 47 Copynumber: 4.7 Consensus size: 46
110214492 ATGCGTGCTG
110214502 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-GGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTAGGCCA
* * * * *
110214546 ATGCGTGTCCCAGACACGTCTTACACTAGC-TATCTCTGTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGT--AGGCCA
* * * * *
110214593 ATGCATGTCCCAGACATGTCTTACTCTAGCACTCATAATATGGATG--A
1 ATGCATGTCCCAGACATGTCTTACACTAGCA--CA-ACTCTGTAGGCCA
* ** * * *
110214640 A-GCATGTCCTAGACATGTCTTACACTAGC-CCTCATTTGGATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCTGTAGGCCA
*
110214685 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACA
110214720 CAAATCACCC
Statistics
Matches: 135, Mismatches: 24, Indels: 25
0.73 0.13 0.14
Matches are distributed among these distances:
43 13 0.10
44 29 0.21
45 2 0.01
46 27 0.20
47 45 0.33
48 12 0.09
49 3 0.02
50 1 0.01
51 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTAGGCCA
Found at i:110215085 original size:30 final size:30
Alignment explanation
Indices: 110215044--110215101 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
110215034 AAATTCACAA
* *
110215044 CTTTGGTAAAATGACCATTTTGCCCCTAGG
1 CTTTGGCAAAATGACCATTTTACCCCTAGG
110215074 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
110215102 TGCCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGG
Found at i:110215437 original size:12 final size:12
Alignment explanation
Indices: 110215420--110215445 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
110215410 CTAAAAATGT
110215420 GAAAATCATCAA
1 GAAAATCATCAA
110215432 GAAAATCATCAA
1 GAAAATCATCAA
110215444 GA
1 GA
110215446 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:110223139 original size:44 final size:45
Alignment explanation
Indices: 110223085--110223197 Score: 140
Period size: 44 Copynumber: 2.5 Consensus size: 45
110223075 TATGCATGCT
110223085 GATGCATGTCCCAGACATGTCTGACACTAGCATAACTC-TT-GGCC
1 GATGCATGTCCCAGACATGTCTGACACTAGC-TAACTCGTTAGGCC
* * * * *
110223129 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTGACACTAGCTAACTC-GTT-AGGCC
110223176 GATGCATGTCCCAGACATGTCT
1 GATGCATGTCCCAGACATGTCT
110223198 TGCTCTGGCA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.09
44 27 0.47
45 2 0.03
47 24 0.41
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTGACACTAGCTAACTCGTTAGGCC
Found at i:110223188 original size:47 final size:46
Alignment explanation
Indices: 110223033--110223301 Score: 192
Period size: 47 Copynumber: 5.7 Consensus size: 46
110223023 GAATAAATTA
* *
110223033 CCGATGCCATGTCCCAGACATTGTCTTATACTGGC-TCTCATATATGCATG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCATCTC-TAT-TG-AGG
* * * ** *
110223083 CTGATGCATGTCCCAGACATGTCTGACACTAGCATAACTCTT--GG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTATTGAGG
* * *
110223127 CCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTTGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTATTGAGG
* *
110223174 CCGATGCATGTCCCAGACATGTCTTGCTCTGGCA-CT-TATAAT-ATGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTAT--TGA-GG
* * * * * * * *
110223220 CTGAAGCATGTCCCAGACATGTATTACACTAGC-CCTCGTCTGGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTC-TATTGAGG
110223266 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCA
110223302 CACAAATCAC
Statistics
Matches: 171, Mismatches: 34, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
44 31 0.18
45 9 0.05
46 38 0.22
47 47 0.27
48 26 0.15
49 15 0.09
50 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTATTGAGG
Found at i:110224021 original size:12 final size:12
Alignment explanation
Indices: 110224004--110224029 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
110223994 CTAAAAATGT
110224004 GAAAATCATCAA
1 GAAAATCATCAA
110224016 GAAAATCATCAA
1 GAAAATCATCAA
110224028 GA
1 GA
110224030 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:110230285 original size:136 final size:137
Alignment explanation
Indices: 110230041--110230326 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
110230031 TATTGGGCCT
** * * *
110230041 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
110230106 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
110230170 CATATGC
131 CATATGC
*
110230177 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGTGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
110230242 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
110230307 CATATGC
131 CATATGC
110230314 AAGCCCATTTGGG
1 AAGCCCATTTGGG
110230327 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 120 0.85
137 22 0.15
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:110232144 original size:26 final size:26
Alignment explanation
Indices: 110232108--110232217 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
110232098 CATGATATTC
110232108 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
110232134 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
110232160 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
110232186 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
110232212 TTATCA
1 TTATCA
110232218 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:110232228 original size:10 final size:10
Alignment explanation
Indices: 110232213--110232237 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
110232203 CCTAACCCAT
110232213 TATCAATTTG
1 TATCAATTTG
110232223 TATCAATTTG
1 TATCAATTTG
110232233 TATCA
1 TATCA
110232238 TAAATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (10 bp):
TATCAATTTG
Found at i:110236206 original size:93 final size:93
Alignment explanation
Indices: 110236094--110236265 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
110236084 CGCCCATAAG
* *
110236094 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
110236159 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
110236187 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
110236252 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
110236266 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:110236262 original size:46 final size:46
Alignment explanation
Indices: 110236087--110236262 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
110236077 TGTAACCCGC
* * *
110236087 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
110236133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
110236183 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
110236226 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
110236263 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:110238871 original size:33 final size:33
Alignment explanation
Indices: 110238845--110238925 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
110238835 AGTCTGGTAG
110238845 GACAGTAAACACAGAACATAGATAGTCCACTGA
1 GACAGTAAACACAGAACATAGATAGTCCACTGA
* * * * *
110238878 GACAGTAAACACAGAATAGATATAGTCTACTGG
1 GACAGTAAACACAGAACATAGATAGTCCACTGA
* *
110238911 GACAATAACCACAGA
1 GACAGTAAACACAGA
110238926 TAGAGTCCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.16
Consensus pattern (33 bp):
GACAGTAAACACAGAACATAGATAGTCCACTGA
Found at i:110241996 original size:26 final size:26
Alignment explanation
Indices: 110241937--110242071 Score: 200
Period size: 26 Copynumber: 5.2 Consensus size: 26
110241927 TGATACAAAT
110241937 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
110241962 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
110241988 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
110242014 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
110242040 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110242066 TGATAA
1 TGATAA
110242072 GAATTTCATG
Statistics
Matches: 102, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 22 0.22
26 80 0.78
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:110243727 original size:27 final size:27
Alignment explanation
Indices: 110243684--110243825 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
110243674 TGGAGGAAGC
*
110243684 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
110243711 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
110243738 GTTCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
110243765 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
110243792 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
110243819 GTTCTGG
1 GTTCTGG
110243826 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
26 5 0.05
27 85 0.81
28 15 0.14
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:110243771 original size:54 final size:54
Alignment explanation
Indices: 110243684--110243825 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 54
110243674 TGGAGGAAGC
* * *
110243684 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCT
110243738 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
* *
110243792 GTATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 GT-TCTGGTGGCTCTGCCACATATATCTGTTCTGG
110243826 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
54 62 0.77
55 19 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
Found at i:110247752 original size:20 final size:21
Alignment explanation
Indices: 110247729--110247778 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 21
110247719 GATAATAGGT
110247729 TAGGTAAATGTT-CATGATAA
1 TAGGTAAATGTTCCATGATAA
110247749 TAGGTTAGTAAATGTTCCATGATAA
1 TA-G---GTAAATGTTCCATGATAA
110247774 TAGGT
1 TAGGT
110247779 TAGGTAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
20 2 0.08
21 3 0.12
24 10 0.40
25 10 0.40
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (21 bp):
TAGGTAAATGTTCCATGATAA
Found at i:110247827 original size:26 final size:26
Alignment explanation
Indices: 110247718--110247850 Score: 209
Period size: 25 Copynumber: 5.2 Consensus size: 26
110247708 TGATACAAAT
110247718 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
110247743 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
110247768 TGATAATAGGTTAGGTAAAT-TTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
110247793 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
110247819 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
110247845 TGATAA
1 TGATAA
110247851 GAATTTCATG
Statistics
Matches: 102, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
24 7 0.07
25 53 0.52
26 42 0.41
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:110249509 original size:27 final size:27
Alignment explanation
Indices: 110249466--110249607 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
110249456 TAGAGGAAGC
*
110249466 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
110249493 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
110249520 GTTCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
110249547 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
110249574 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
110249601 GTTCTGG
1 GTTCTGG
110249608 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
26 5 0.05
27 85 0.81
28 15 0.14
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:110249553 original size:54 final size:54
Alignment explanation
Indices: 110249466--110249607 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 54
110249456 TAGAGGAAGC
* * *
110249466 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCT
110249520 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
* *
110249574 GTATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 GT-TCTGGTGGCTCTGCCACATATATCTGTTCTGG
110249608 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
54 62 0.77
55 19 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCT
Found at i:110253405 original size:5 final size:5
Alignment explanation
Indices: 110253395--110253419 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
110253385 ATTTGAAAAC
110253395 GGAGA GGAGA GGAGA GGAGA GGAGA
1 GGAGA GGAGA GGAGA GGAGA GGAGA
110253420 AGGAAGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GGAGA
Found at i:110255799 original size:33 final size:33
Alignment explanation
Indices: 110255757--110255823 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
110255747 AAACTTTCTT
110255757 TTCTTGTCCTAGAACTACATAACCCTCAAGTTG
1 TTCTTGTCCTAGAACTACATAACCCTCAAGTTG
* *
110255790 TTCTTGTCCTATAACTACATAACCCTCAGGTTG
1 TTCTTGTCCTAGAACTACATAACCCTCAAGTTG
110255823 T
1 T
110255824 ACCATATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (33 bp):
TTCTTGTCCTAGAACTACATAACCCTCAAGTTG
Found at i:110256001 original size:18 final size:18
Alignment explanation
Indices: 110255978--110256017 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
110255968 GTAGTCAAGG
110255978 CCTTCCTTTTGTCTATAA
1 CCTTCCTTTTGTCTATAA
110255996 CCTTCCTTTTGTCTATAA
1 CCTTCCTTTTGTCTATAA
110256014 CCTT
1 CCTT
110256018 TTATAACCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.15, C:0.30, G:0.05, T:0.50
Consensus pattern (18 bp):
CCTTCCTTTTGTCTATAA
Found at i:110260892 original size:11 final size:11
Alignment explanation
Indices: 110260846--110260892 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
110260836 GCCTTTTCGC
*
110260846 TATTTTGCT-G
1 TATTTTGCTAT
*
110260856 TATTTTACTAT
1 TATTTTGCTAT
*
110260867 TATGTTGCTAT
1 TATTTTGCTAT
*
110260878 TATTTTGTTAT
1 TATTTTGCTAT
110260889 TATT
1 TATT
110260893 GTTTAGATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 8 0.27
11 22 0.73
ACGTcount: A:0.19, C:0.06, G:0.11, T:0.64
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:110261312 original size:18 final size:17
Alignment explanation
Indices: 110261289--110261326 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
110261279 AATTAGCATT
*
110261289 TTTATAT-TTTTTAAAA
1 TTTATATATTTATAAAA
110261305 TTTATATATTTATAAAA
1 TTTATATATTTATAAAA
110261322 TTTAT
1 TTTAT
110261327 GAAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTATATATTTATAAAA
Found at i:110264576 original size:43 final size:43
Alignment explanation
Indices: 110264515--110264705 Score: 174
Period size: 43 Copynumber: 4.4 Consensus size: 43
110264505 GTTACCGAGA
*
110264515 TGTGATTACATGTAAGACCCTGTATGGGACAGTGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTATGGGACAGTGGCATCGTAT
* * ** *
110264558 TGTGATTACATGTAAGACCCAGTGTTAGACAGTGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTATGGGACAGTGGCATCGTAT
* * * * *
110264601 TGCGATTACGTGTAAGACCATGTGTGGGACA-TCGGCATCGTTAA
1 TGTGATTACATGTAAGACCCTGTATGGGACAGT-GGCATCG-TAT
* * * *
110264645 T-CGACTT-CGTGTAAGACCTTGTATAGGACAGTGGCATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTATGGGACAGTGGCATCGTAT
*
110264686 ATGTGATAACATGTAAGACC
1 -TGTGATTACATGTAAGACC
110264706 ATATCTAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 112 0.92
44 6 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCCTGTATGGGACAGTGGCATCGTAT
Found at i:110274536 original size:18 final size:17
Alignment explanation
Indices: 110274513--110274547 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
110274503 TTATACATTC
110274513 ATAATTTACATATATATA
1 ATAATTTACATAT-TATA
*
110274531 ATAATTTATATATTATA
1 ATAATTTACATATTATA
110274548 TGTTCTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATTTACATATTATA
Found at i:110275380 original size:24 final size:24
Alignment explanation
Indices: 110275334--110275385 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
110275324 CTCGTACTCG
* * *
110275334 TCTTCATTTCCACTATCGTCTTCA
1 TCTTCATGTCCACCATCGGCTTCA
* *
110275358 TCTTCATGTCCACCATTGGCTTCG
1 TCTTCATGTCCACCATCGGCTTCA
110275382 TCTT
1 TCTT
110275386 TGTCTCCATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.13, C:0.33, G:0.10, T:0.44
Consensus pattern (24 bp):
TCTTCATGTCCACCATCGGCTTCA
Found at i:110285992 original size:20 final size:21
Alignment explanation
Indices: 110285969--110286007 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
110285959 ATTTAATTGC
*
110285969 TTTTTAT-TTAAATAAATAGA
1 TTTTTATATGAAATAAATAGA
110285989 TTTTTATATGAAATAAATA
1 TTTTTATATGAAATAAATA
110286008 AAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
TTTTTATATGAAATAAATAGA
Found at i:110286249 original size:19 final size:20
Alignment explanation
Indices: 110286211--110286251 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
110286201 AGGCAAACGA
*
110286211 AAAGGAAAGAAAGAAAGGAG
1 AAAGAAAAGAAAGAAAGGAG
*
110286231 AAAGAAAAGAAA-AAGGGAG
1 AAAGAAAAGAAAGAAAGGAG
110286250 AA
1 AA
110286252 TTAGGGTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAAAGAAAGGAG
Found at i:110287563 original size:18 final size:18
Alignment explanation
Indices: 110287506--110287564 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
110287496 GGTAAATAGA
* *
110287506 TACTGAATAATTAACTGC
1 TACTGAATAACTGACTGC
* * *
110287524 TAATGAATAACTGATTGT
1 TACTGAATAACTGACTGC
*
110287542 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGC
110287560 TACTG
1 TACTG
110287565 CGTAAAAAAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:110287598 original size:18 final size:18
Alignment explanation
Indices: 110287577--110287645 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
110287567 TAAAAAAATG
*
110287577 TTACTGAATAATTGATTA
1 TTACTGAATAATTGATCA
* *
110287595 TTACTGAATAATTTATCG
1 TTACTGAATAATTGATCA
* *
110287613 TTACTGAATAATTTATCC
1 TTACTGAATAATTGATCA
110287631 TTACTGAATAATTGA
1 TTACTGAATAATTGA
110287646 CTGTTAAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (18 bp):
TTACTGAATAATTGATCA
Found at i:110292897 original size:26 final size:26
Alignment explanation
Indices: 110292858--110292965 Score: 141
Period size: 26 Copynumber: 4.2 Consensus size: 26
110292848 TGATACAATT
*
110292858 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
110292884 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
110292910 TGATAATGGGTTA-GTAAATGCTT-CA
1 TGATAATAGGTTAGGTAAATG-TTCCA
* *
110292935 -GATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110292960 TGATAA
1 TGATAA
110292966 GAATTTCATG
Statistics
Matches: 74, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
24 14 0.19
25 18 0.24
26 42 0.57
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.34
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:110292949 original size:50 final size:52
Alignment explanation
Indices: 110292866--110292965 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 52
110292856 TTTGATAAAA
110292866 GGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGATAATG
* * *
110292918 GGTTA-GTAAATGCTT-CA-GATAATGGGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATG-TTCCATGATAATAGATTAGGTAAATGTTCCATGATAA
110292966 GAATTTCATG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 28 0.64
51 9 0.20
52 7 0.16
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (52 bp):
GGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGATAATG
Found at i:110294449 original size:28 final size:26
Alignment explanation
Indices: 110294407--110294481 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
110294397 AAAAGTAGCT
* * *
110294407 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
110294435 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
110294461 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
110294482 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:110294626 original size:27 final size:27
Alignment explanation
Indices: 110294585--110294751 Score: 228
Period size: 27 Copynumber: 6.2 Consensus size: 27
110294575 GAGGAAGTGT
*
110294585 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
110294612 TCTGGTGGCTCTGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
110294639 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
110294666 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
110294693 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
110294721 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
110294747 TCTGG
1 TCTGG
110294752 CAGCCATGCT
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
26 5 0.04
27 107 0.84
28 15 0.12
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:110294837 original size:19 final size:22
Alignment explanation
Indices: 110294813--110294852 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
110294803 CTCCCCACAC
110294813 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
110294832 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
110294853 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:110302194 original size:45 final size:46
Alignment explanation
Indices: 110302005--110302200 Score: 180
Period size: 46 Copynumber: 4.3 Consensus size: 46
110301995 TTATACTTGA
* * * *
110302005 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTAT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTTTGT
* * * *
110302051 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTTGT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTTTGT
* * * * * ***
110302097 CACGTTTCCATTGTATCTTTCAACCATGGTCTTACACA-TTTGAAT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTTTGT
** ** * *
110302142 CGCGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTTTGT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTTTGT
110302188 -ATGATGCCATAGT
1 CATGATGCCATAGT
110302201 CTAACTATGG
Statistics
Matches: 117, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
45 42 0.36
46 75 0.64
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTTTGT
Found at i:110302244 original size:33 final size:33
Alignment explanation
Indices: 110302207--110302347 Score: 101
Period size: 33 Copynumber: 4.3 Consensus size: 33
110302197 TAGTCTAACT
*
110302207 ATGGTCTTACACGTGTATTGCCATGGCCCAGCC
1 ATGGTCTTACACGTGTATTGCCATAGCCCAGCC
** * * **
110302240 ATGGTCTTACAC-TCGTGGTGCCATATCCTAGAT
1 ATGGTCTTACACGT-GTATTGCCATAGCCCAGCC
** *
110302273 ATGGTCTTACCATCAG-G-A-TGCCATAGCTTAGCT
1 ATGGTCTTA-CA-C-GTGTATTGCCATAGCCCAGCC
* * *
110302306 ATGGTCTTACACATATATTGCCATGGCCCAGCC
1 ATGGTCTTACACGTGTATTGCCATAGCCCAGCC
110302339 ATGGTCTTA
1 ATGGTCTTA
110302348 TCCGTCAATT
Statistics
Matches: 83, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
31 1 0.01
32 4 0.05
33 74 0.89
34 2 0.02
35 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (33 bp):
ATGGTCTTACACGTGTATTGCCATAGCCCAGCC
Found at i:110308787 original size:108 final size:108
Alignment explanation
Indices: 110308598--110308917 Score: 505
Period size: 108 Copynumber: 3.0 Consensus size: 108
110308588 TAATTGGTTG
* * * * *
110308598 TAGAACCATGAAAACTTTAAATAGATGAAGCATGAACTTGAGTTGATGATAGGCATGACAATGCA
1 TAGAACCATGAGAACTTTAAATAGAAGAAGCTTGAACTTGAGTTGATGATTGGCATGACAAAGCA
*
110308663 TGGTGGTCATAATCACTATCGGAGACAATTTTTACATTTACCC
66 TGGTGGTCATAATCACTATCGGAGACAATTTTTGCATTTACCC
*
110308706 TAGAACAATGAGAACTTTAAATAGAAGAAGCTTGAACTTGAGTTGATGATTGGCATGACAAAGCA
1 TAGAACCATGAGAACTTTAAATAGAAGAAGCTTGAACTTGAGTTGATGATTGGCATGACAAAGCA
* ** *
110308771 TGGTGGTCATACTCACTATTAGAGACAATTTTTGCATTTTCCC
66 TGGTGGTCATAATCACTATCGGAGACAATTTTTGCATTTACCC
* *
110308814 TAGAACCATGAGAACTTTAAATAGACGAAGCTTGAACTTGAGTTGATGATTGGCATGACAGAGCA
1 TAGAACCATGAGAACTTTAAATAGAAGAAGCTTGAACTTGAGTTGATGATTGGCATGACAAAGCA
* *
110308879 TGGTGGCCATAATCACTACCGGAGACAATTTTTGCATTT
66 TGGTGGTCATAATCACTATCGGAGACAATTTTTGCATTT
110308918 TTTTAGATAG
Statistics
Matches: 193, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 193 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (108 bp):
TAGAACCATGAGAACTTTAAATAGAAGAAGCTTGAACTTGAGTTGATGATTGGCATGACAAAGCA
TGGTGGTCATAATCACTATCGGAGACAATTTTTGCATTTACCC
Found at i:110310218 original size:15 final size:15
Alignment explanation
Indices: 110310198--110310238 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
110310188 TTTTAACCCG
110310198 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
110310213 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
110310228 GGATAAAGAAA
1 GAATAAAGAAA
110310239 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:110310247 original size:15 final size:15
Alignment explanation
Indices: 110310200--110310247 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
110310190 TTAACCCGGA
110310200 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
110310214 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
110310230 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
110310245 ATA
1 ATA
110310248 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:110312950 original size:46 final size:46
Alignment explanation
Indices: 110312900--110313075 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
110312890 TGTTTGGGCA
*
110312900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
110312946 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
110312993 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
110313039 ACCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
110313076 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:110313055 original size:93 final size:93
Alignment explanation
Indices: 110312896--110313067 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
110312886 AGGATGTTTG
* *
110312896 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCGAACTCGTTGAG
110312961 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
110312989 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGACCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCGAACTCGTTGAG
110313054 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
110313068 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:110317135 original size:2 final size:2
Alignment explanation
Indices: 110317128--110317161 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
110317118 TTCTTATATG
110317128 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
110317162 AATAGACGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:110319823 original size:14 final size:14
Alignment explanation
Indices: 110319804--110319831 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
110319794 GAATGTTACT
110319804 TTCTTTCATTCCTA
1 TTCTTTCATTCCTA
110319818 TTCTTTCATTCCTA
1 TTCTTTCATTCCTA
110319832 ATCAAGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (14 bp):
TTCTTTCATTCCTA
Found at i:110322202 original size:13 final size:13
Alignment explanation
Indices: 110322186--110322217 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
110322176 ATTGAAAAGT
*
110322186 AATTTAGAAATTG
1 AATTGAGAAATTG
110322199 AATTGAGAAATTG
1 AATTGAGAAATTG
110322212 AATTGA
1 AATTGA
110322218 TTGTTGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (13 bp):
AATTGAGAAATTG
Found at i:110323400 original size:46 final size:46
Alignment explanation
Indices: 110323127--110323400 Score: 386
Period size: 46 Copynumber: 6.0 Consensus size: 46
110323117 TTTGACATGA
* * * * * * *
110323127 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* ** * * *
110323173 TGCCGTGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** *
110323219 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
110323265 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
110323311 TTCCATGGTATCTTTCAACCATGGCCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
110323357 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
110323401 AGAGCACACT
Statistics
Matches: 210, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 210 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:110325492 original size:11 final size:11
Alignment explanation
Indices: 110325478--110325507 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
110325468 ACTAAATAAT
110325478 TAATAAAAAAA
1 TAATAAAAAAA
*
110325489 TAATAATAAAA
1 TAATAAAAAAA
110325500 TAATAAAA
1 TAATAAAA
110325508 TATCTCATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
TAATAAAAAAA
Found at i:110337992 original size:22 final size:21
Alignment explanation
Indices: 110337967--110338015 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
110337957 CCCTCATCCT
*
110337967 TTCTTTTCCACTTTTCT-TTCTC
1 TTCTTTTCC-C-TTTCTATTCTA
110337989 TTCTCTTTCCCTTTCTATTCTA
1 TTCT-TTTCCCTTTCTATTCTA
110338011 TTCTT
1 TTCTT
110338016 CTCATTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (21 bp):
TTCTTTTCCCTTTCTATTCTA
Found at i:110341696 original size:32 final size:32
Alignment explanation
Indices: 110341655--110341718 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
110341645 AGTGTGAGGA
110341655 TATTTGATAAACCGTAAGATATACATATTTTT
1 TATTTGATAAACCGTAAGATATACATATTTTT
110341687 TATTTGATAAACCGTAAGATATACATATTTTT
1 TATTTGATAAACCGTAAGATATACATATTTTT
110341719 ACCCCATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (32 bp):
TATTTGATAAACCGTAAGATATACATATTTTT
Found at i:110348255 original size:17 final size:18
Alignment explanation
Indices: 110348230--110348265 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
110348220 TACCCTCAAA
*
110348230 ATAATATAATT-TATTTT
1 ATAAAATAATTGTATTTT
110348247 ATAAAATAATTGTATTTT
1 ATAAAATAATTGTATTTT
110348265 A
1 A
110348266 ATCATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
ATAAAATAATTGTATTTT
Found at i:110351354 original size:6 final size:6
Alignment explanation
Indices: 110351343--110351371 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
110351333 AAGCTTGTTA
110351343 TTATTC TTATTC TTATTC TTATTC TTATT
1 TTATTC TTATTC TTATTC TTATTC TTATT
110351372 ATGAAGTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATTC
Found at i:110351613 original size:15 final size:16
Alignment explanation
Indices: 110351593--110351622 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
110351583 ATACATATTT
110351593 ATATGAT-AATATTAA
1 ATATGATAAATATTAA
110351608 ATATGATAAATATTA
1 ATATGATAAATATTA
110351623 TTGTGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (16 bp):
ATATGATAAATATTAA
Found at i:110353413 original size:45 final size:45
Alignment explanation
Indices: 110353349--110353438 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
110353339 ACGAGCGATA
110353349 ACTCCAAGCTCATGTCCGAGTGGATCCTAGATTCCGGATGTTCTT
1 ACTCCAAGCTCATGTCCGAGTGGATCCTAGATTCCGGATGTTCTT
110353394 ACTCCAAGCTCATGTCCGAGTGGATCCTAGATTCCGGATGTTCTT
1 ACTCCAAGCTCATGTCCGAGTGGATCCTAGATTCCGGATGTTCTT
110353439 TCCACATGTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (45 bp):
ACTCCAAGCTCATGTCCGAGTGGATCCTAGATTCCGGATGTTCTT
Found at i:110356408 original size:46 final size:46
Alignment explanation
Indices: 110356358--110356533 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
110356348 TGGTTGAGCA
110356358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
110356404 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
110356449 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
110356497 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
110356534 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:110356514 original size:93 final size:93
Alignment explanation
Indices: 110356355--110356526 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
110356345 GGATGGTTGA
* *
110356355 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
110356420 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
110356448 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
110356513 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
110356527 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:110358138 original size:39 final size:39
Alignment explanation
Indices: 110358071--110358170 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
110358061 TCGTGATCTG
*
110358071 AAGCCCG-AAGTCTAACTGAAGCACATAAGTGCTAAACGA
1 AAGCCCGAAAG-CTAACTGAAGCAAATAAGTGCTAAACGA
* *
110358110 AAGCTCGAAAGCTAACTGAAGCAAATAAGTGCTAAACGG
1 AAGCCCGAAAGCTAACTGAAGCAAATAAGTGCTAAACGA
*
110358149 AAGCCCGAAGGCTAACTGAAGC
1 AAGCCCGAAAGCTAACTGAAGC
110358171 TCACCAGAGC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 52 0.95
40 3 0.05
ACGTcount: A:0.41, C:0.22, G:0.23, T:0.14
Consensus pattern (39 bp):
AAGCCCGAAAGCTAACTGAAGCAAATAAGTGCTAAACGA
Found at i:110365653 original size:20 final size:20
Alignment explanation
Indices: 110365621--110365688 Score: 63
Period size: 19 Copynumber: 3.5 Consensus size: 20
110365611 CTGAAGCTCG
*
110365621 AAGT-CTAACTGAAGCACAT
1 AAGTGCTAAATGAAGCACAT
*
110365640 AAGTGCTAAATGAAAGCCCGA-
1 AAGTGCTAAATG-AAGCAC-AT
*
110365661 AA--GCTAACTGAAGCACAT
1 AAGTGCTAAATGAAGCACAT
110365679 AAGTGCTAAA
1 AAGTGCTAAA
110365689 CGGAAGCCCG
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
17 1 0.03
18 7 0.18
19 11 0.29
20 11 0.29
21 7 0.18
22 1 0.03
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (20 bp):
AAGTGCTAAATGAAGCACAT
Found at i:110365679 original size:39 final size:39
Alignment explanation
Indices: 110365625--110365713 Score: 142
Period size: 39 Copynumber: 2.3 Consensus size: 39
110365615 AGCTCGAAGT
*
110365625 CTAACTGAAGCACATAAGTGCTAAATGAAAGCCCGAAAG
1 CTAACTGAAGCACATAAGTGCTAAACGAAAGCCCGAAAG
* *
110365664 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGAAAGCCCGAAAG
*
110365703 ATAACTGAAGC
1 CTAACTGAAGC
110365714 TCACAGAGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGAAAGCCCGAAAG
Found at i:110365695 original size:21 final size:21
Alignment explanation
Indices: 110365631--110365695 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
110365621 AAGTCTAACT
*
110365631 GAAGCACATAAGTGCTAAATG
1 GAAGCACATAAGTGCTAAACG
* * *
110365652 AAAGCCCGA-AA--GCT-AACT
1 GAAGCAC-ATAAGTGCTAAACG
110365670 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
110365691 GAAGC
1 GAAGC
110365696 CCGAAGGATA
Statistics
Matches: 32, Mismatches: 7, Indels: 10
0.65 0.14 0.20
Matches are distributed among these distances:
17 1 0.03
18 9 0.28
19 3 0.09
20 3 0.09
21 15 0.47
22 1 0.03
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:110372593 original size:13 final size:13
Alignment explanation
Indices: 110372575--110372602 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
110372565 ACAATATATT
110372575 TATTAATTAAAAA
1 TATTAATTAAAAA
110372588 TATTAATTAAAAA
1 TATTAATTAAAAA
110372601 TA
1 TA
110372603 AAAAGAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:110373276 original size:9 final size:9
Alignment explanation
Indices: 110373262--110373304 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
110373252 ATTTAATATA
110373262 ATTTTTAAT
1 ATTTTTAAT
110373271 ATTTTTAAT
1 ATTTTTAAT
* *
110373280 AATTTATATTT
1 -ATTTTTA-AT
110373291 ATTTTTAAT
1 ATTTTTAAT
110373300 ATTTT
1 ATTTT
110373305 AGAATTACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 15 0.54
10 12 0.43
11 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:110376259 original size:17 final size:17
Alignment explanation
Indices: 110376218--110376264 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
110376208 GAATTATATA
*
110376218 TTAATATTTTTATTTTATT
1 TTAA-ATTTTTA-ATTATT
110376237 TT--ATTTTTAATTATT
1 TTAAATTTTTAATTATT
110376252 TTAAATTTTTAAT
1 TTAAATTTTTAAT
110376265 ATAATTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.28
16 7 0.28
17 9 0.36
19 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTAAATTTTTAATTATT
Found at i:110376350 original size:22 final size:22
Alignment explanation
Indices: 110376311--110376369 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
110376301 GTTTTAAGAA
*
110376311 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
110376332 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
110376354 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
110376370 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:110376386 original size:26 final size:24
Alignment explanation
Indices: 110376340--110376398 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
110376330 ATTTGTTTTA
*
110376340 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
110376364 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
*
110376390 -TTTTTATTT
1 ATATTTATTT
110376399 AATGAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 8 0.26
26 13 0.42
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:110376958 original size:6 final size:6
Alignment explanation
Indices: 110376947--110376981 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
110376937 GCCGGCAAAT
110376947 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCC
1 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCC
110376982 AGTCTTGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.49, G:0.17, T:0.34
Consensus pattern (6 bp):
TTGCCC
Found at i:110381282 original size:17 final size:18
Alignment explanation
Indices: 110381256--110381307 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
110381246 AAAAGTTTAT
110381256 ATAAATATA-TTAAATATA
1 ATAAATATATTTAAAT-TA
110381274 ATAAA-ATATTTAAATTA
1 ATAAATATATTTAAATTA
*
110381291 ATTAATGATATTATAAA
1 ATAAAT-ATATT-TAAA
110381308 AATTGAGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 9 0.31
18 11 0.38
19 5 0.17
20 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATAAATATATTTAAATTA
Found at i:110384244 original size:14 final size:14
Alignment explanation
Indices: 110384210--110384246 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
110384200 TCATAAAGAA
*
110384210 ATGATAAATTGACT
1 ATGATAAATTGAAT
110384224 A--ATAAATTGAAT
1 ATGATAAATTGAAT
110384236 ATGATAAATTG
1 ATGATAAATTG
110384247 CAATTTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 11 0.55
14 9 0.45
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.35
Consensus pattern (14 bp):
ATGATAAATTGAAT
Found at i:110392542 original size:15 final size:15
Alignment explanation
Indices: 110392524--110392627 Score: 76
Period size: 14 Copynumber: 7.3 Consensus size: 15
110392514 ACTATTTAAA
*
110392524 GGTTTATGGATTATG
1 GGTTTATGGGTTATG
110392539 GGTTTA-GGGATTAT-
1 GGTTTATGGG-TTATG
*
110392553 -GTTTATGGCTTAT-
1 GGTTTATGGGTTATG
* * *
110392566 GTTTTAAGGGTT-GG
1 GGTTTATGGGTTATG
*
110392580 GGTTTAAGGGTTATG
1 GGTTTATGGGTTATG
* *
110392595 GG-TTATTGGTTAGG
1 GGTTTATGGGTTATG
*
110392609 GGTTTAGGGGTTATG
1 GGTTTATGGGTTATG
110392624 GGTT
1 GGTT
110392628 AATAGTTTAA
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
13 9 0.13
14 34 0.49
15 26 0.38
ACGTcount: A:0.16, C:0.01, G:0.38, T:0.44
Consensus pattern (15 bp):
GGTTTATGGGTTATG
Found at i:110392565 original size:13 final size:13
Alignment explanation
Indices: 110392525--110392569 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
110392515 CTATTTAAAG
110392525 GTTTATGGATTAT
1 GTTTATGGATTAT
*
110392538 GGGTTTAGGGATTAT
1 --GTTTATGGATTAT
*
110392553 GTTTATGGCTTAT
1 GTTTATGGATTAT
110392566 GTTT
1 GTTT
110392570 TAAGGGTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 15 0.56
15 12 0.44
ACGTcount: A:0.18, C:0.02, G:0.29, T:0.51
Consensus pattern (13 bp):
GTTTATGGATTAT
Found at i:110392620 original size:29 final size:28
Alignment explanation
Indices: 110392574--110392628 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
110392564 ATGTTTTAAG
110392574 GGTTGGGGTTTAAGGGTTATGGGTTATT
1 GGTTGGGGTTTAAGGGTTATGGGTTATT
*
110392602 GGTTAGGGGTTTAGGGGTTATGGGTTA
1 GGTT-GGGGTTTAAGGGTTATGGGTTA
110392629 ATAGTTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (28 bp):
GGTTGGGGTTTAAGGGTTATGGGTTATT
Found at i:110392641 original size:29 final size:29
Alignment explanation
Indices: 110392580--110392671 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
110392570 TAAGGGTTGG
* * *
110392580 GGTTTAAGGGTTATGGGTT-ATTGGTTAGG
1 GGTTTAAGGGTTATGGGTTAATAGTTTA-A
*
110392609 GGTTTAGGGGTTATGGGTTAATAGTTTAA
1 GGTTTAAGGGTTATGGGTTAATAGTTTAA
* * * * *
110392638 GG-TTAAGGCTTAGGGGTTATTATTTTGA
1 GGTTTAAGGGTTATGGGTTAATAGTTTAA
110392666 GGTTTA
1 GGTTTA
110392672 GGTTTTAGGG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
28 22 0.43
29 23 0.45
30 6 0.12
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.42
Consensus pattern (29 bp):
GGTTTAAGGGTTATGGGTTAATAGTTTAA
Found at i:110392797 original size:21 final size:21
Alignment explanation
Indices: 110392767--110392823 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
110392757 TTGTTTTGTG
*
110392767 GTTTATGGTTTAAGGGATATA
1 GTTTAGGGTTTAAGGGATATA
*
110392788 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAAGGGATATA
*
110392809 GTTTAGAGTTTAAGG
1 GTTTAGGGTTTAAGG
110392824 TTATGGGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.40
Consensus pattern (21 bp):
GTTTAGGGTTTAAGGGATATA
Found at i:110392818 original size:28 final size:27
Alignment explanation
Indices: 110392787--110392859 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 27
110392777 TAAGGGATAT
*
110392787 AGTTTAGGGTTTAGGGGATATAGTTTA
1 AGTTTAAGGTTTAGGGGATATAGTTTA
110392814 GAGTTTAAGG-TTATGGGGATATAGTTTA
1 -AGTTTAAGGTTTA-GGGGATATAGTTTA
110392842 ATGATTTAAGGTTTAGGG
1 A-G-TTTAAGGTTTAGGG
110392860 TTTTGATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 4 0.10
28 23 0.57
29 10 0.25
30 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (27 bp):
AGTTTAAGGTTTAGGGGATATAGTTTA
Found at i:110394410 original size:9 final size:9
Alignment explanation
Indices: 110394398--110394439 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
110394388 TCAATTGAAA
110394398 TTTAATGTT
1 TTTAATGTT
*
110394407 TTTAATG-A
1 TTTAATGTT
110394415 TTTAATGTT
1 TTTAATGTT
110394424 TTTAATGTT
1 TTTAATGTT
110394433 TTTAATG
1 TTTAATG
110394440 ATTTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (9 bp):
TTTAATGTT
Found at i:110394445 original size:17 final size:17
Alignment explanation
Indices: 110394397--110394430 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
110394387 TTCAATTGAA
110394397 ATTTAATGTTTTTAATG
1 ATTTAATGTTTTTAATG
110394414 ATTTAATGTTTTTAATG
1 ATTTAATGTTTTTAATG
110394431 TTTTTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
ATTTAATGTTTTTAATG
Found at i:110394460 original size:26 final size:25
Alignment explanation
Indices: 110394398--110394449 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
110394388 TCAATTGAAA
**
110394398 TTTAATGTTTTTAATGATTTAATGTT
1 TTTAA-GTTTTTAATGATTTAAAATT
110394424 TTTAATGTTTTTAATGATTTAAAATT
1 TTTAA-GTTTTTAATGATTTAAAATT
110394450 AGTTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (25 bp):
TTTAAGTTTTTAATGATTTAAAATT
Found at i:110404571 original size:19 final size:18
Alignment explanation
Indices: 110404549--110404593 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
110404539 ATTAAATAAC
110404549 ATAAAAATTAATAATAAAT
1 ATAAAAATTAA-AATAAAT
*
110404568 ATAAAAA-TAAAATATAT
1 ATAAAAATTAAAATAAAT
*
110404585 ATTAAAATT
1 ATAAAAATT
110404594 TTAAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 12 0.52
18 4 0.17
19 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAAAAATTAAAATAAAT
Found at i:110404731 original size:8 final size:7
Alignment explanation
Indices: 110404703--110404729 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
110404693 CTTATTTTCG
110404703 ATTTTTA
1 ATTTTTA
110404710 ATTTTTA
1 ATTTTTA
110404717 ATTTTTA
1 ATTTTTA
110404724 ATTTTT
1 ATTTTT
110404730 TACCTATTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
ATTTTTA
Found at i:110406867 original size:19 final size:19
Alignment explanation
Indices: 110406827--110406864 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
110406817 GTCATTTTCT
*
110406827 GTTAAAAAGGAAAAAAAAG
1 GTTAAAAAGCAAAAAAAAG
110406846 GTTAAAAA-CAAAAAAAAG
1 GTTAAAAAGCAAAAAAAAG
110406864 G
1 G
110406865 GTTGTGTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.68, C:0.03, G:0.18, T:0.11
Consensus pattern (19 bp):
GTTAAAAAGCAAAAAAAAG
Found at i:110406911 original size:27 final size:27
Alignment explanation
Indices: 110406878--110406945 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
110406868 GTGTGGGTGC
*
110406878 CAGAGGCGGCACCGGTTGTGCCTCTGG
1 CAGAGGCGGCACCGGTTGTGCCTCTGA
* *
110406905 CATAGGCGACACCGGTTGTGCCTCTGA
1 CAGAGGCGGCACCGGTTGTGCCTCTGA
110406932 CAGAGGCGGCACCG
1 CAGAGGCGGCACCG
110406946 CCCCATTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.16, C:0.31, G:0.37, T:0.16
Consensus pattern (27 bp):
CAGAGGCGGCACCGGTTGTGCCTCTGA
Found at i:110407184 original size:16 final size:16
Alignment explanation
Indices: 110407141--110407186 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
110407131 TGCTTTTGCT
110407141 GTTATTATTATTGTT-
1 GTTATTATTATTGTTA
*
110407156 G--ATT-TTTTTGTTA
1 GTTATTATTATTGTTA
110407169 GTTATTATTATTGTTA
1 GTTATTATTATTGTTA
110407185 GT
1 GT
110407187 AAAAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
12 7 0.28
13 4 0.16
15 4 0.16
16 10 0.40
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65
Consensus pattern (16 bp):
GTTATTATTATTGTTA
Found at i:110407209 original size:42 final size:42
Alignment explanation
Indices: 110407163--110407304 Score: 170
Period size: 42 Copynumber: 3.5 Consensus size: 42
110407153 GTTGATTTTT
110407163 TTGTTAGTTATTATTATTGTTAGTAAAAAACCCTTATTATTG
1 TTGTTAGTTATTATTATTGTTAGTAAAAAACCCTTATTATTG
** *
110407205 TTGTTAGTTATTATTATTGTTAGTAAAAAACTATTATTA-GG
1 TTGTTAGTTATTATTATTGTTAGTAAAAAACCCTTATTATTG
* *
110407246 ATTGTT-G--GTTATTATTGTTAGTAAAAAATCCC-AATTATTG
1 -TTGTTAGTTATTATTATTGTTAGTAAAAAA-CCCTTATTATTG
110407286 TTAGTTA-TTATTATTATTG
1 TT-GTTAGTTATTATTATTG
110407305 ATTTATATTA
Statistics
Matches: 84, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
39 26 0.31
40 5 0.06
41 2 0.02
42 51 0.61
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (42 bp):
TTGTTAGTTATTATTATTGTTAGTAAAAAACCCTTATTATTG
Done.