Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 38 of 444
Found at i:9379300 original size:72 final size:71
Alignment explanation
Indices: 9379179--9379344 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
9379169 GAGTTAAGCC
** * *
9379179 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
9379243 TGAGGTA
65 TGAGGTA
*
9379250 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
9379315 TGAGGTA
65 TGAGGTA
* *
9379322 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
9379345 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:9379546 original size:221 final size:211
Alignment explanation
Indices: 9379151--9379559 Score: 532
Period size: 221 Copynumber: 1.9 Consensus size: 211
9379141 TTTTAAATTG
* ** *
9379151 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTGAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCG
* * * * *
9379216 AGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATTTCTGTCTTTAAAATTCAACTCA
** * *
9379281 TATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTA
131 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTA
9379346 CGTTGTTCAAGAATCA
196 CGTTGTTCAAGAATCA
* *
9379362 ACTCATATTGCGAGAGGTGGGATGAA-CCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTG
1 ACTCATATTGCGAGAGGTGAG-TGAAGCCTTTTAATTT-TACTTTTTCAAAATCAACTCATATTG
* **
9379426 CGAGAGGTGTGTTGAGCCTCGATTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAA
64 CGAGAGGTGAGTTGAGCCTCGAGGCAC--GCTGAGGTATTTTCAATTTCTGTCTTT-------AA
* *
9379491 AATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTG
120 AATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
9379556 TTTT
185 TTTT
9379560 TCAAAAAAAT
Statistics
Matches: 167, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
211 31 0.19
212 48 0.29
214 25 0.15
221 63 0.38
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (211 bp):
ACTCATATTGCGAGAGGTGAGTGAAGCCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTCAATTTCTGTCTTTAAAATTCAACTCA
TATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTA
CGTTGTTCAAGAATCA
Found at i:9379613 original size:75 final size:75
Alignment explanation
Indices: 9379409--9379714 Score: 371
Period size: 75 Copynumber: 4.0 Consensus size: 75
9379399 CTACTTTTTC
* * ** *
9379409 AAAATCAGCTCATATTGCGAGAGGTGTGTTGAGCCTCGATTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A-GGACACGCTGAGGTATTTTCAATTT
*
9379474 CTGTCTTTCAAAAAA
64 CTGTTTTTC---AAA
* ** * *
9379489 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
9379554 TGTTTTTCAAA
65 TGTTTTTCAAA
*
9379565 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
9379630 G-TTGTCAAA
66 GTTTTTCAAA
* * * *
9379639 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
*
9379704 CCGTTTTTCAA
64 CTGTTTTTCAA
9379715 TTTCTGCCTT
Statistics
Matches: 200, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
74 44 0.22
75 56 0.28
76 30 0.15
77 6 0.03
79 31 0.16
80 5 0.03
81 28 0.14
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTCAAA
Found at i:9379790 original size:94 final size:94
Alignment explanation
Indices: 9379636--9379808 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
9379626 TTCTGTTGTC
* * * *
9379636 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
9379701 TTTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAA
* * * *
9379730 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
9379794 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
9379809 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
93 2 0.03
94 66 0.97
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (94 bp):
AAAAAAATCAACTCATATTGCGAAAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:9379865 original size:171 final size:168
Alignment explanation
Indices: 9379562--9379868 Score: 454
Period size: 171 Copynumber: 1.8 Consensus size: 168
9379552 TCTGTTTTTC
* *
9379562 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
* * *
9379627 TCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
9379692 TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
131 TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * *
9379730 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
* * ** *
9379794 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTTTCAGATCACACACT
63 ATTTCTGT-TGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTCAGATCACACACC
9379859 GAGGTATTTT
127 GAGGTATTTT
9379869 TTCAATTTAT
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
167 2 0.02
168 38 0.31
170 24 0.20
171 58 0.48
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (168 bp):
AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
TCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
Found at i:9379933 original size:79 final size:77
Alignment explanation
Indices: 9379730--9379933 Score: 246
Period size: 79 Copynumber: 2.6 Consensus size: 77
9379720 GCCTTTCAAA
* * * * *
9379730 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
* *
9379795 TTTCTGTCTTTC
66 TTTATATCTTTC
* ** * *
9379807 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTC
*
9379872 AATTTATATTTTTC
64 AATTTATATCTTTC
* * *
9379886 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA
9379934 TGTCGAGGTA
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
77 48 0.46
79 57 0.54
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:9379985 original size:88 final size:88
Alignment explanation
Indices: 9379888--9380049 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
9379878 TATTTTTCAA
* * *
9379888 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCT-GAGCTATTTTCAAA
9379952 ATCTGTTTTTCAGATTCTGTTTTC
65 ATCTGTTTTTCAGATTCTGTTTTC
* * * **
9379976 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGCTATTTTCAAAA
9380041 TCTGTTTTT
66 TCTGTTTTT
9380050 TTTTTCAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
88 64 0.98
89 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGCTATTTTCAAAA
TCTGTTTTTCAGATTCTGTTTTC
Found at i:9380072 original size:250 final size:241
Alignment explanation
Indices: 9379487--9380304 Score: 861
Period size: 255 Copynumber: 3.3 Consensus size: 241
9379477 TCTTTCAAAA
* * ** * *
9379487 AAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCA
1 AAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCA
** * *
9379549 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCT
64 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACT
* * * * * *
9379612 GAGGTA-ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTC
129 GAGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * ** * *
9379676 AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
194 -GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TTTC
*
9379727 AAAAAAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 ----AAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
* *
9379791 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTTTCAGATCACAC
61 TCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACAC
* * *
9379856 ACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGA
126 ACTGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
9379921 GCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
189 GCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-TTTC
9379976 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* *
9380040 TTCTGTTTTTTTTTTCAAAAAAATTCAACTCATTTTGCGAGAGGTGAGTTGAGCTTTTTA-ATTT
66 TTCTG-----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG--TTTCAGA--T
** * * * *
9380104 CTGTGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC--AAAAATCAATTCATATTGCGAGA
121 C--ACACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGA
* * * * **
9380166 GGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
179 GGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
*
9380230 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
9380295 TTCTGTTTTT
66 TTCTGTTTTT
9380305 AATGTCTGGT
Statistics
Matches: 492, Mismatches: 53, Indels: 52
0.82 0.09 0.09
Matches are distributed among these distances:
242 2 0.00
243 26 0.05
244 72 0.15
245 69 0.14
246 1 0.00
247 12 0.02
249 27 0.05
250 107 0.22
251 1 0.00
252 4 0.01
253 2 0.00
254 4 0.01
255 138 0.28
256 9 0.02
257 14 0.03
258 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (241 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACTGA
GGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
Found at i:9380112 original size:30 final size:30
Alignment explanation
Indices: 9380078--9380137 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
9380068 CTCATTTTGC
9380078 GAGAGGTGAGTTGAG-CTTTTTAATTTCTGT
1 GAGAGGTGAGTTGAGTC-TTTTAATTTCTGT
*
9380108 GAGAGTTGAGTTGAGTCTTTTAATTTCTGT
1 GAGAGGTGAGTTGAGTCTTTTAATTTCTGT
9380138 TTTTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.45
Consensus pattern (30 bp):
GAGAGGTGAGTTGAGTCTTTTAATTTCTGT
Found at i:9380988 original size:7 final size:7
Alignment explanation
Indices: 9380977--9381009 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
9380967 CCTAACCCTA
*
9380977 AAAAAAA
1 AAAAAAG
9380984 AAAAAAG
1 AAAAAAG
9380991 AAAAAAG
1 AAAAAAG
9380998 AAAAAAG
1 AAAAAAG
9381005 AAAAA
1 AAAAA
9381010 CCTAACCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:9384815 original size:2 final size:2
Alignment explanation
Indices: 9384808--9384846 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9384798 AGTGGGTTCT
9384808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9384847 CTCACACTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9386642 original size:15 final size:15
Alignment explanation
Indices: 9386622--9386650 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9386612 ATTAAATTCT
9386622 AAAAGATAAATAAAA
1 AAAAGATAAATAAAA
9386637 AAAAGATAAATAAA
1 AAAAGATAAATAAA
9386651 GATAAAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (15 bp):
AAAAGATAAATAAAA
Found at i:9388719 original size:77 final size:76
Alignment explanation
Indices: 9388633--9388881 Score: 250
Period size: 77 Copynumber: 3.2 Consensus size: 76
9388623 ATTCTGAAAC
* * * * *
9388633 AAAATAAAATTAAAATCAATTCTATTGAATGGCATGATTAAATCCCGAAACAAAATTATTTAATT
1 AAAACAAAATTAAAATAAATTCTATT-AACGGCAGGAATAAATCCCGAAACAAAATTATTTAATT
9388698 AAATCATGTTTG
65 AAATCATGTTTG
* * * *
9388710 AAAACAAAATTAAAATAAAATT-TATTAAACGGCAGGAACAAATCCCAAAACAGAATTATTTGAT
1 AAAACAAAATTAAAAT-AAATTCTATT-AACGGCAGGAATAAATCCCGAAACAAAATTATTTAAT
**
9388774 TAAATTTTGTTTG
64 TAAATCATGTTTG
* * * * **
9388787 GAAACAAATTTAAAATAAAATCTGTTAAGCGGC-GGAATAAATCTTGAAACAAAATTATTTAATT
1 AAAACAAAATTAAAATAAATTCTATTAA-CGGCAGGAATAAATCCCGAAACAAAATTATTTAATT
*
9388851 AAATCTTCTCGTTTG
65 AAATC--AT-GTTTG
*
9388866 GAAACAAAATTAAAAT
1 AAAACAAAATTAAAAT
9388882 TGAATAAAAT
Statistics
Matches: 141, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
76 35 0.25
77 81 0.57
78 5 0.04
79 20 0.14
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (76 bp):
AAAACAAAATTAAAATAAATTCTATTAACGGCAGGAATAAATCCCGAAACAAAATTATTTAATTA
AATCATGTTTG
Found at i:9389175 original size:79 final size:80
Alignment explanation
Indices: 9388627--9389334 Score: 574
Period size: 79 Copynumber: 8.9 Consensus size: 80
9388617 ATTAAAATTC
* * * * * * * * *
9388627 TGAAACAAAAT-AAAATTAAAATCAATTCTATTGAATGGCATGATTAAATCCCGAAACAAAATTA
1 TGAAA-AAAATCAAAATT-AAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTA
* *
9388691 TTTAATTAAATCAT-GTT
64 TTCAATTAATTC-TCGTT
* * *
9388708 TG---AAAA-CAAAATTAAAATAAAATTTATTAAACGGCAGGAACAAATCCCAAAACAGAATTAT
1 TGAAAAAAATCAAAATT-AAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTAT
** *
9388769 TTGATTAAATT-TTGTT
65 TCAATT-AATTCTCGTT
* * * * * *** *
9388785 TG---GAAA-CAAATTTAAAATAAAATCTGTTAAGCGGC-GGAATAAATCTTGAAACAAAATTAT
1 TGAAAAAAATCAAAATT-AAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTAT
*
9388845 TTAATTAAATCTTCTCGTT
65 TCAATT-AA--TTCTCGTT
* * * * *
9388864 TGGAAACAAAATTAAAATTGAATAAAATCTGTTAAACGAC-GAGAATAAATCTCGAAACAG-ATT
1 T-GAAA-AAAATCAAAATTAAATAAAATCTATTAAACGACAG-GAATAAATCCCAAAACAGAATT
*
9388927 ATTCAATTATTTCTCGTT
63 ATTCAATTAATTCTCGTT
** * * ** * *
9388945 TAGAAACAAAATCAAAATCGAATAAAATTTGTTAAAC-AGTGAGAATAAATCCCGAAACAAAATT
1 T-GAAA-AAAATCAAAATTAAATAAAATCTATTAAACGACAG-GAATAAATCCCAAAACAGAATT
9389009 ATTCAATTAATTCTCGTT
63 ATTCAATTAATTCTCGTT
* * * * * * *
9389027 TGGAAACAAAATCAAAATCAATTAAAATCTGTTAAACGACA-AAAAAAATCCCGAAATAGAATTA
1 T-GAAA-AAAATCAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTA
*
9389091 TTCAATTAATTCTTGTT
64 TTCAATTAATTCTCGTT
* * * *
9389108 T-AAAAAAATAAAAATTAAATAAAATCTATTAAATGACAGGAATAAATCCTAAAATAGAATTATT
1 TGAAAAAAATCAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTATT
*
9389172 CAATTAATTCTTGTT
66 CAATTAATTCTCGTT
* * *
9389187 T-TAAAAAATAAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAATAGAA-T-TT
1 TGAAAAAAATCAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTATT
*
9389249 CAATTATTTCTCGTT
66 CAATTAATTCTCGTT
* *
9389264 TGAAAAAAAATCAAAATTAAATAAAATCTATTAAACGGCAGGAATAAATTCCAAAACAGAATTAT
1 TG-AAAAAAATCAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTAT
9389329 TCAATT
65 TCAATT
9389335 TTAATTTTAT
Statistics
Matches: 534, Mismatches: 72, Indels: 42
0.82 0.11 0.06
Matches are distributed among these distances:
76 29 0.05
77 102 0.19
78 35 0.07
79 153 0.29
80 3 0.01
81 104 0.19
82 53 0.10
83 2 0.00
84 32 0.06
85 21 0.04
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (80 bp):
TGAAAAAAATCAAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCCAAAACAGAATTATT
CAATTAATTCTCGTT
Found at i:9389319 original size:40 final size:40
Alignment explanation
Indices: 9389197--9389319 Score: 90
Period size: 40 Copynumber: 3.1 Consensus size: 40
9389187 TTAAAAAATA
*
9389197 AAAATTAAATAAAATCTATTAAACGACAGGAATAAATCCC
1 AAAATTAAATAAAATCTATTAAACGACAGGAATAAATTCC
** *** *** * * *
9389237 AAAA-TAGAATTTCAAT-TATTTCTCGTTTGAAAAAAAAT-C
1 AAAATTA-AA-TAAAATCTATTAAACGACAGGAATAAATTCC
*
9389276 AAAATTAAATAAAATCTATTAAACGGCAGGAATAAATTCC
1 AAAATTAAATAAAATCTATTAAACGACAGGAATAAATTCC
9389316 AAAA
1 AAAA
9389320 CAGAATTATT
Statistics
Matches: 55, Mismatches: 23, Indels: 10
0.62 0.26 0.11
Matches are distributed among these distances:
38 4 0.07
39 22 0.40
40 25 0.45
41 4 0.07
ACGTcount: A:0.53, C:0.12, G:0.08, T:0.27
Consensus pattern (40 bp):
AAAATTAAATAAAATCTATTAAACGACAGGAATAAATTCC
Found at i:9392560 original size:27 final size:26
Alignment explanation
Indices: 9392524--9392574 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
9392514 CATATCAGAA
*
9392524 ATTTTCATAT-TTCCAAAACGTATATC
1 ATTTTCATATATT-CAAAACATATATC
9392550 ATTTATCATATATTCAAAACATATA
1 ATTT-TCATATATTCAAAACATATA
9392575 ACATATTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 16 0.73
28 2 0.09
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (26 bp):
ATTTTCATATATTCAAAACATATATC
Found at i:9400808 original size:28 final size:27
Alignment explanation
Indices: 9400737--9400810 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 27
9400727 CTTTATACAT
* *
9400737 ATATACATTATTT-GTTTTAAATTTTT
1 ATATACATTATTTATTTTTAAATTTTC
* *
9400763 ATATA-TTTACTGTCATTTTTAAATCTTTC
1 ATATACATTA-T-TTATTTTTAAAT-TTTC
9400792 ATATACATTATTTATTTTT
1 ATATACATTATTTATTTTT
9400811 TAAGTCTTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
25 3 0.08
26 6 0.16
27 1 0.03
28 15 0.41
29 9 0.24
30 3 0.08
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (27 bp):
ATATACATTATTTATTTTTAAATTTTC
Found at i:9401075 original size:26 final size:25
Alignment explanation
Indices: 9401046--9401109 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 25
9401036 TATATATTAT
* *
9401046 TTATTTTTTATTTATTTTATTTTAAA
1 TTATTTTATATTTA-ATTATTTTAAA
*
9401072 TTATGTTATATATTAATTATTTTAAA
1 TTATTTTATAT-TTAATTATTTTAAA
*
9401098 TTGTTTTATATT
1 TTATTTTATATT
9401110 ATCTACTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.03
26 28 0.88
27 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (25 bp):
TTATTTTATATTTAATTATTTTAAA
Found at i:9401102 original size:24 final size:23
Alignment explanation
Indices: 9401023--9401124 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 23
9401013 CTACATGTTG
9401023 TTTTAAATTGTTATATA-TATTA
1 TTTTAAATTGTTATATATTATTA
* * *
9401045 -TTT-ATTTTTTATTTATT-TTA
1 TTTTAAATTGTTATATATTATTA
9401065 TTTTAAATTATGTTATATATTAATTA
1 TTTTAAA-T-TGTTATATATT-ATTA
*
9401091 TTTTAAATTGTTTTATATTATCTA
1 TTTTAAATTGTTATATATTAT-TA
*
9401115 CTTTAAATTG
1 TTTTAAATTG
9401125 CTTCGTACTT
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
20 12 0.19
21 7 0.11
22 1 0.02
23 3 0.05
24 30 0.47
25 1 0.02
26 10 0.16
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTAAATTGTTATATATTATTA
Found at i:9405376 original size:2 final size:2
Alignment explanation
Indices: 9405362--9405395 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
9405352 ATGGTTCATT
*
9405362 TA TA TA GA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9405396 TAAATTTAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9407148 original size:28 final size:28
Alignment explanation
Indices: 9407117--9407181 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
9407107 TTATTTTAAG
*
9407117 TTTATTTATATTATTTTAAAATTTAA-A-T
1 TTTATTTATACTATTTT--AATTTAATATT
9407145 TTTATTTATACTATTTTAATTTAATATT
1 TTTATTTATACTATTTTAATTTAATATT
9407173 TTTATTTAT
1 TTTATTTAT
9407182 TAAAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
26 7 0.21
27 1 0.03
28 26 0.76
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (28 bp):
TTTATTTATACTATTTTAATTTAATATT
Found at i:9407885 original size:2 final size:2
Alignment explanation
Indices: 9407878--9407916 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
9407868 ATAATTCATA
* * *
9407878 AT AT AT AT AA AT AT AC AT AT AT AC AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9407917 GCTTTGTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:9412053 original size:26 final size:26
Alignment explanation
Indices: 9412023--9412130 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
9412013 TGAAATTCCC
9412023 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9412049 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
9412075 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
9412101 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9412127 ATCA
1 ATCA
9412131 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9417393 original size:26 final size:26
Alignment explanation
Indices: 9417357--9417466 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
9417347 TGATACAAAT
9417357 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
9417383 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
9417409 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
9417435 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
9417461 TGATAA
1 TGATAA
9417467 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:9418953 original size:25 final size:26
Alignment explanation
Indices: 9418925--9418973 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
9418915 TACAGTTTTA
9418925 CCCTAGAGATAAATT-ACCGAAATAC
1 CCCTAGAGATAAATTGACCGAAATAC
* * *
9418950 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
9418974 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (26 bp):
CCCTAGAGATAAATTGACCGAAATAC
Found at i:9422713 original size:26 final size:26
Alignment explanation
Indices: 9422677--9422786 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
9422667 CATGAAATTC
9422677 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
9422703 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
9422729 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
9422755 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
9422781 TTATCA
1 TTATCA
9422787 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:9423575 original size:43 final size:43
Alignment explanation
Indices: 9423524--9423630 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
9423514 AGATGTGGTT
* * *
9423524 ACATGTAAGACCATGTTTGGGACATTGGCATCGTTACATGATT
1 ACATGTAAGACCATGTTTGGGACAATGGCATCGATACATGATA
* * * * **
9423567 TCGTGTAAGACCCTGTCT-GGACAATGGCATCGATATGTGATA
1 ACATGTAAGACCATGTTTGGGACAATGGCATCGATACATGATA
*
9423609 ACATGTAAGACCATATTTGGGA
1 ACATGTAAGACCATGTTTGGGA
9423631 TATAGCATTG
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
42 32 0.65
43 17 0.35
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (43 bp):
ACATGTAAGACCATGTTTGGGACAATGGCATCGATACATGATA
Found at i:9425394 original size:35 final size:35
Alignment explanation
Indices: 9425334--9425423 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 35
9425324 AATAGTTGAT
* ** * * *
9425334 TCGCATAATTTGACTCACATGTAATATTAACAGGC
1 TCGCATAAATTGACTTGCATTTAATAATAACAGAC
* **
9425369 TCGCATAAATTTACTTGCATTTAATAATATTAGAC
1 TCGCATAAATTGACTTGCATTTAATAATAACAGAC
9425404 TCGCATAAATTGACTTGCAT
1 TCGCATAAATTGACTTGCAT
9425424 GGCATATTCT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (35 bp):
TCGCATAAATTGACTTGCATTTAATAATAACAGAC
Found at i:9426300 original size:30 final size:30
Alignment explanation
Indices: 9426266--9426327 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
9426256 CTTATTTTAC
*
9426266 TGTTAATTTTGTTATTATTTTAAAGATATT
1 TGTTAATTTTGTTATTATTTTAAAGACATT
*
9426296 TGTTAATTTTGTTATTATTTTAATGACATT
1 TGTTAATTTTGTTATTATTTTAAAGACATT
9426326 TG
1 TG
9426328 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (30 bp):
TGTTAATTTTGTTATTATTTTAAAGACATT
Found at i:9427702 original size:5 final size:6
Alignment explanation
Indices: 9427687--9427711 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9427677 TATAATCATT
9427687 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
9427712 ATAATTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:9427871 original size:15 final size:16
Alignment explanation
Indices: 9427846--9427875 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9427836 TTAAAACGTT
9427846 CATTGAATTGAATTAC
1 CATTGAATTGAATTAC
9427862 CATT-AATTGAATTA
1 CATTGAATTGAATTA
9427876 ACCGAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (16 bp):
CATTGAATTGAATTAC
Found at i:9430910 original size:30 final size:29
Alignment explanation
Indices: 9430859--9430954 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 29
9430849 GTATTATAAA
* * *
9430859 TATGTATATA-TGTATACTTTATGTATAT
1 TATGTATATATTATATATTTTATATATAT
* *
9430887 TATGTATATATTTTTATATTTTATAAATATT
1 TATGTATATA-TTATATATTTTATATATA-T
*
9430918 ATATGTATATA-TATATTTTTTA-ATATAT
1 -TATGTATATATTATATATTTTATATATAT
9430946 TATGTATAT
1 TATGTATAT
9430955 TGTGTACATA
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
27 9 0.16
28 11 0.19
29 4 0.07
30 22 0.39
31 1 0.02
32 10 0.18
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.57
Consensus pattern (29 bp):
TATGTATATATTATATATTTTATATATAT
Found at i:9430955 original size:38 final size:39
Alignment explanation
Indices: 9430863--9430955 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 39
9430853 TATAAATATG
9430863 TATA-TATGTATACTTTATGTATATTATGTATATATTTTTA
1 TATATTATGTATA-TTTATGTATATTA-GTATATATTTTTA
* **
9430903 TATTTTATAAATATTATATGTATA-TA-TATAT-TTTTTAA
1 TATATTATGTATATT-TATGTATATTAGTATATATTTTT-A
9430941 TATATTATGTATATT
1 TATATTATGTATATT
9430956 GTGTACATAC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
37 5 0.11
38 18 0.41
40 7 0.16
41 14 0.32
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.58
Consensus pattern (39 bp):
TATATTATGTATATTTATGTATATTAGTATATATTTTTA
Found at i:9431478 original size:12 final size:12
Alignment explanation
Indices: 9431463--9431497 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
9431453 TATATTATTA
*
9431463 TTTTTGTTATCG
1 TTTTCGTTATCG
*
9431475 TTTTCGTTTTCG
1 TTTTCGTTATCG
9431487 TTTTCGTTATC
1 TTTTCGTTATC
9431498 ATTGTCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.14, G:0.14, T:0.66
Consensus pattern (12 bp):
TTTTCGTTATCG
Found at i:9431514 original size:24 final size:24
Alignment explanation
Indices: 9431460--9431514 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
9431450 ATTTATATTA
* * * *
9431460 TTATTTTTGTTATCGTTTTCGTTT
1 TTATTTTCGTTATCATTGTCATTT
**
9431484 TCGTTTTCGTTATCATTGTCATTT
1 TTATTTTCGTTATCATTGTCATTT
9431508 TTATTTT
1 TTATTTT
9431515 TATTTTGCCA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (24 bp):
TTATTTTCGTTATCATTGTCATTT
Found at i:9434897 original size:27 final size:26
Alignment explanation
Indices: 9434859--9435017 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
9434849 GTGAGGTTGC
*
9434859 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGACAG-AGCCACCAGA-A
9434886 CAGATATTGTGACAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAA
* * *
9434912 CAGATATATGTGGCAGAGCCACCGGAT
1 CAGATAT-TGTGACAGAGCCACCAGAA
* * * *
9434939 CAGACAATCGTGGCATAGCCACCAGAA
1 CAGA-TATTGTGACAGAGCCACCAGAA
* *
9434966 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGACAGAGCCACCAGAA
* * *
9434993 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGACAGAGCCACCAG
9435018 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:9434963 original size:54 final size:54
Alignment explanation
Indices: 9434901--9435017 Score: 198
Period size: 54 Copynumber: 2.2 Consensus size: 54
9434891 ATTGTGACAG
*
9434901 AGCCACCAGAACAGATATATGTGGCAGAGCCACCGGATCAGACAATCGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGACAATCGTGGCAT
* * *
9434955 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGACAATCGTGGCAT
9435009 AGCCACCAG
1 AGCCACCAG
9435018 GACGCTTCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (54 bp):
AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGACAATCGTGGCAT
Found at i:9436669 original size:26 final size:26
Alignment explanation
Indices: 9436638--9436745 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
9436628 TGAAATGCCC
*
9436638 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
9436664 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9436690 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
9436716 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9436742 ATCA
1 ATCA
9436746 ATTTGTACTA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9437503 original size:3 final size:3
Alignment explanation
Indices: 9437486--9437546 Score: 106
Period size: 3 Copynumber: 20.3 Consensus size: 3
9437476 GGTAAAATTT
9437486 ATA ATA A-A ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9437531 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
9437547 GAAGAAGAAG
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.04
3 51 0.91
4 3 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:9437551 original size:3 final size:3
Alignment explanation
Indices: 9437545--9437582 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
9437535 TAATAATAAT
9437545 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
9437583 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9437659 original size:24 final size:24
Alignment explanation
Indices: 9437644--9437690 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
9437634 AAAGTATGTA
9437644 AAAAATGGGTAATAAATAAATAGT
1 AAAAATGGGTAATAAATAAATAGT
9437668 AAAAATGGGTAATAAATAAATAG
1 AAAAATGGGTAATAAATAAATAG
9437691 ATCATAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (24 bp):
AAAAATGGGTAATAAATAAATAGT
Found at i:9437834 original size:4 final size:4
Alignment explanation
Indices: 9437820--9437947 Score: 60
Period size: 4 Copynumber: 31.0 Consensus size: 4
9437810 TACAAGGATT
* * * *
9437820 TAAA AAAA TAAA TAAAA TAAA TAAA TGAA TGAGCAA TATA TAAA TAGA
1 TAAA TAAA TAAA T-AAA TAAA TAAA TAAA T-A--AA TAAA TAAA TAAA
* * * * * *
9437868 TAAG TAAA TGAA TAAA CAAA TGAAA TAAA AAAA GAAA T-AA TGAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
* * * * * *
9437916 TAAG CAAG TAGA TAAA TAAA TGAA TACA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
9437948 AGAATTAAAA
Statistics
Matches: 90, Mismatches: 28, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
3 3 0.03
4 75 0.83
5 8 0.09
6 1 0.01
7 3 0.03
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:9440671 original size:19 final size:20
Alignment explanation
Indices: 9440647--9440700 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 20
9440637 GAATATATGC
9440647 AATCTTAGAGATGACT-TGT
1 AATCTTAGAGATGACTCTGT
*
9440666 AATCTTAGAAGGTATGATTCTGT
1 AATCTTAG-A-G-ATGACTCTGT
9440689 AATCTTAGAGAT
1 AATCTTAGAGAT
9440701 TTGATTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 8 0.27
20 3 0.10
21 2 0.07
22 6 0.20
23 11 0.37
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (20 bp):
AATCTTAGAGATGACTCTGT
Found at i:9440711 original size:22 final size:21
Alignment explanation
Indices: 9440647--9440711 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
9440637 GAATATATGC
*
9440647 AATCTTAGAGA-TGA-CTTGT
1 AATCTTAGAGATTGATTTTGT
* *
9440666 AATCTTAGAAGGTATGATTCTGT
1 AATCTTAG-AGAT-TGATTTTGT
9440689 AATCTTAGAGATTTGATTTTGT
1 AATCTTAGAGA-TTGATTTTGT
9440711 A
1 A
9440712 GATAACTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
19 8 0.22
20 2 0.06
22 14 0.39
23 12 0.33
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (21 bp):
AATCTTAGAGATTGATTTTGT
Found at i:9440920 original size:169 final size:169
Alignment explanation
Indices: 9440641--9440964 Score: 551
Period size: 169 Copynumber: 1.9 Consensus size: 169
9440631 ATTTTTGAAT
*
9440641 ATATGCAATCTTAGAGATGACTTGTAATCTTAGAAGGTATGATTCTGTAATCTTAGAGATTTGAT
1 ATATGCAATCTTAGAGATGACTTGTAATATTAGAAGGTATGATTCTGTAATCTTAGAGATTTGAT
9440706 TTTGTAGATAACTTTTAATCTTAGCTGTTGATGTACTTTAATCTGTACCATTGAATTTG-GAGAG
66 TTTGTAGATAACTTTTAATCTTAGCTGTTGATGTACTTTAATCTGTACCATTGAATTTGAG-GAG
9440770 GATCAACTACAAATAGAGGCCTCTCCCATAATCTTCGAAG
130 GATCAACTACAAATAGAGGCCTCTCCCATAATCTTCGAAG
* * *
9440810 ATATGCAATCTTAGAGATGACTTGTATTATTAGAAGTTATGATTCTGTAGTCTTAGAGATTTGAT
1 ATATGCAATCTTAGAGATGACTTGTAATATTAGAAGGTATGATTCTGTAATCTTAGAGATTTGAT
* * *
9440875 TTTGTAGATAGCTTTTAATCTTAGTTGTTGATGTACTTTAATCTGTACCATTGACTTTGAGGAGG
66 TTTGTAGATAACTTTTAATCTTAGCTGTTGATGTACTTTAATCTGTACCATTGAATTTGAGGAGG
* *
9440940 ATCAACTATAAATAGGGGCCTCTCC
131 ATCAACTACAAATAGAGGCCTCTCC
9440965 TCCTCATTGT
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
169 144 0.99
170 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (169 bp):
ATATGCAATCTTAGAGATGACTTGTAATATTAGAAGGTATGATTCTGTAATCTTAGAGATTTGAT
TTTGTAGATAACTTTTAATCTTAGCTGTTGATGTACTTTAATCTGTACCATTGAATTTGAGGAGG
ATCAACTACAAATAGAGGCCTCTCCCATAATCTTCGAAG
Found at i:9445003 original size:15 final size:15
Alignment explanation
Indices: 9444976--9445008 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9444966 AAACATTTTC
9444976 TTTTGTGCTTTTGCTT
1 TTTTGTGCTTTTG-TT
9444992 TTTTGTGC-TTTGTT
1 TTTTGTGCTTTTGTT
9445006 TTT
1 TTT
9445009 ATATTTCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 4 0.24
16 8 0.47
ACGTcount: A:0.00, C:0.09, G:0.18, T:0.73
Consensus pattern (15 bp):
TTTTGTGCTTTTGTT
Found at i:9447840 original size:26 final size:24
Alignment explanation
Indices: 9447810--9447859 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
9447800 TAAATAAAAA
*
9447810 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
9447836 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
9447860 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:9452276 original size:56 final size:55
Alignment explanation
Indices: 9452214--9452319 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
9452204 AAGTACTGAC
* * * *
9452214 TAATAATCA-TTAAATCATATTTATGTGAAAAGTAAAT-TATTTAAAATTATTAT
1 TAATAATAATTTAAATAATATTTATGTAAAAAGTAAATATATTCAAAATTATTAT
*
9452267 TAATAATAATTTTAATAATATTTATGTAAAAAGTAAATCATATTCAAAATTAT
1 TAATAATAATTTAAATAATATTTATGTAAAAAGTAAAT-ATATTCAAAATTAT
9452320 ATTTCCATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 8 0.18
54 25 0.56
56 12 0.27
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (55 bp):
TAATAATAATTTAAATAATATTTATGTAAAAAGTAAATATATTCAAAATTATTAT
Found at i:9453057 original size:2 final size:2
Alignment explanation
Indices: 9453045--9453075 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9453035 GTAATTAAAG
*
9453045 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9453076 TTATGATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:9453578 original size:5 final size:5
Alignment explanation
Indices: 9453568--9453599 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
9453558 ATTACTGTGA
9453568 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
9453600 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:9453593 original size:9 final size:9
Alignment explanation
Indices: 9453569--9453599 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
9453559 TTACTGTGAA
9453569 AAATAAAAT
1 AAATAAAAT
9453578 AAAATAAAAT
1 -AAATAAAAT
9453588 AAATAAAAT
1 AAATAAAAT
9453597 AAA
1 AAA
9453600 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:9458028 original size:5 final size:5
Alignment explanation
Indices: 9458018--9458049 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
9458008 CAATTTGTGA
9458018 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
9458050 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:9458043 original size:9 final size:9
Alignment explanation
Indices: 9458019--9458049 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
9458009 AATTTGTGAA
9458019 AAATAAAAT
1 AAATAAAAT
9458028 AAAATAAAAT
1 -AAATAAAAT
9458038 AAATAAAAT
1 AAATAAAAT
9458047 AAA
1 AAA
9458050 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:9459658 original size:17 final size:17
Alignment explanation
Indices: 9459636--9459669 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9459626 TAAGGTTTTA
9459636 GCATTATAAATAATAAT
1 GCATTATAAATAATAAT
9459653 GCATTATAAATAATAAT
1 GCATTATAAATAATAAT
9459670 AATAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
GCATTATAAATAATAAT
Found at i:9459923 original size:16 final size:17
Alignment explanation
Indices: 9459902--9459936 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
9459892 ATGAAACATT
9459902 TTTTATTATTAA-AAAA
1 TTTTATTATTAATAAAA
*
9459918 TTTTATTTTTAATAAAA
1 TTTTATTATTAATAAAA
9459935 TT
1 TT
9459937 CTAAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTATTATTAATAAAA
Found at i:9462437 original size:3 final size:3
Alignment explanation
Indices: 9462429--9462477 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
9462419 TTTATCTTGT
9462429 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9462477 T
1 T
9462478 CATATTGTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9463688 original size:23 final size:23
Alignment explanation
Indices: 9463643--9463689 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
9463633 TTCTCGACAT
**
9463643 TTACATTTTTATTTAATTTAATC
1 TTACATTTTTATTTAATGCAATC
9463666 TTACATTTTTATTTAGA-GCAATC
1 TTACATTTTTATTTA-ATGCAATC
9463689 T
1 T
9463690 ACCCTCTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.55
Consensus pattern (23 bp):
TTACATTTTTATTTAATGCAATC
Found at i:9464143 original size:12 final size:11
Alignment explanation
Indices: 9464125--9464171 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
9464115 TCAATTAATT
9464125 AATTTTTAAAA
1 AATTTTTAAAA
9464136 ATATTTTTAATAA
1 A-ATTTTTAA-AA
9464149 AATTTTT--AA
1 AATTTTTAAAA
9464158 AA-TTTTAAAA
1 AATTTTTAAAA
9464168 AATT
1 AATT
9464172 AATTGATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 4 0.13
9 4 0.13
10 4 0.13
11 2 0.06
12 14 0.45
13 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
AATTTTTAAAA
Found at i:9464639 original size:22 final size:23
Alignment explanation
Indices: 9464614--9464658 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
9464604 ATTAAAAAAT
*
9464614 TATA-TTTT-TAATTGATATTTTA
1 TATACTTTTATAATT-AAATTTTA
9464636 TATACTTTTATAATTAAATTTTA
1 TATACTTTTATAATTAAATTTTA
9464659 AAAAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 11 0.55
24 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATACTTTTATAATTAAATTTTA
Found at i:9465266 original size:15 final size:15
Alignment explanation
Indices: 9465239--9465275 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
9465229 AATACCTCTC
9465239 TGTTAAA-TTTTATT
1 TGTTAAATTTTTATT
9465253 TGTTAAATTTTTATT
1 TGTTAAATTTTTATT
9465268 TGTTAAAT
1 TGTTAAAT
9465276 GATGACATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (15 bp):
TGTTAAATTTTTATT
Found at i:9465847 original size:25 final size:25
Alignment explanation
Indices: 9465818--9465922 Score: 151
Period size: 25 Copynumber: 4.2 Consensus size: 25
9465808 ATTCATACAT
*
9465818 AAATAATTATATTAATTTAATATGA
1 AAATAATTATATTAATCTAATATGA
9465843 AAATAATTATATTAAATCTAATAT-A
1 AAATAATTATATT-AATCTAATATGA
* *
9465868 AAAT-ATTATATTAATTTAATATAA
1 AAATAATTATATTAATCTAATATGA
9465892 AAATAATTATATTAATCTAATATGA
1 AAATAATTATATTAATCTAATATGA
*
9465917 ATATAA
1 AAATAA
9465923 GTGCATGTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 9 0.12
24 13 0.18
25 41 0.57
26 9 0.12
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
AAATAATTATATTAATCTAATATGA
Found at i:9465876 original size:49 final size:49
Alignment explanation
Indices: 9465818--9465914 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
9465808 ATTCATACAT
*
9465818 AAATAATTATATTAATTTAATATGAAAATAATTATATTAAATCTAATATA
1 AAATAATTATATTAATTTAATATAAAAATAATTATATT-AATCTAATATA
9465868 AAAT-ATTATATTAATTTAATATAAAAATAATTATATTAATCTAATAT
1 AAATAATTATATTAATTTAATATAAAAATAATTATATTAATCTAATAT
9465915 GAATATAAGT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
48 10 0.22
49 32 0.70
50 4 0.09
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (49 bp):
AAATAATTATATTAATTTAATATAAAAATAATTATATTAATCTAATATA
Found at i:9465981 original size:31 final size:31
Alignment explanation
Indices: 9465945--9466013 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
9465935 ATTTCTTTAA
* *
9465945 ATATATACAATTA-AGTTAAAATTAAAATTTT
1 ATATATAC-ATAAGAGTCAAAATTAAAATTTT
* *
9465976 ATATATACATAAGAGTCACAATTCAAATTTT
1 ATATATACATAAGAGTCAAAATTAAAATTTT
9466007 ATATATA
1 ATATATA
9466014 ATTACACCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 3 0.09
31 30 0.91
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.39
Consensus pattern (31 bp):
ATATATACATAAGAGTCAAAATTAAAATTTT
Found at i:9466034 original size:27 final size:29
Alignment explanation
Indices: 9465963--9466039 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
9465953 AATTAAGTTA
* *
9465963 AAATTAAAATTTTATATATACATAAGAGTC
1 AAATTAAAA-TTTATATATACATAACAGCC
* *
9465993 ACAATTCAAATTTTATATATA-ATTACA-CC
1 A-AATT-AAAATTTATATATACATAACAGCC
9466022 AAATTAAAATTTATATAT
1 AAATTAAAATTTATATAT
9466040 CAAATTATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 12 0.30
28 4 0.10
29 2 0.05
30 5 0.12
31 14 0.35
32 3 0.08
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.39
Consensus pattern (29 bp):
AAATTAAAATTTATATATACATAACAGCC
Found at i:9468491 original size:17 final size:18
Alignment explanation
Indices: 9468469--9468502 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9468459 ATTTAAACTC
9468469 TAAAAGAT-AAATAAAAA
1 TAAAAGATGAAATAAAAA
*
9468486 TAAAAGCTGAAATAAAA
1 TAAAAGATGAAATAAAA
9468503 TTTAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.18
Consensus pattern (18 bp):
TAAAAGATGAAATAAAAA
Found at i:9468524 original size:12 final size:12
Alignment explanation
Indices: 9468507--9468535 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
9468497 ATAAAATTTA
9468507 AATAATAATCCT
1 AATAATAATCCT
9468519 AATAATAATCCT
1 AATAATAATCCT
9468531 AATAA
1 AATAA
9468536 AATTCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (12 bp):
AATAATAATCCT
Found at i:9469128 original size:12 final size:12
Alignment explanation
Indices: 9469079--9469144 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
9469069 CCAAATGTAA
9469079 TTCTTTATTTTTT
1 TTCTTT-TTTTTT
*
9469092 TT-TTTACTTTTT
1 TTCTTT-TTTTTT
** *
9469104 TTCCCTTTATTT
1 TTCTTTTTTTTT
9469116 TTCTTTTTTTTT
1 TTCTTTTTTTTT
* *
9469128 TTCGTTTTTCTT
1 TTCTTTTTTTTT
9469140 TTCTT
1 TTCTT
9469145 AATAATATAT
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
12 38 0.93
13 3 0.07
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.80
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:9471010 original size:18 final size:18
Alignment explanation
Indices: 9470983--9471047 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
9470973 TATATGTATT
*
9470983 AAAACATATACGTAATAA
1 AAAATATATACGTAATAA
*
9471001 AAAATGTATACGTAGTATATAA
1 AAAATATATAC---GTA-ATAA
*
9471023 AAAAGTATATACATAATAA
1 AAAA-TATATACGTAATAA
9471042 AAAATA
1 AAAATA
9471048 CAATATTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
18 11 0.29
19 8 0.21
20 2 0.05
21 3 0.08
22 8 0.21
23 6 0.16
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.26
Consensus pattern (18 bp):
AAAATATATACGTAATAA
Found at i:9471141 original size:21 final size:19
Alignment explanation
Indices: 9471117--9471156 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
9471107 AACTATTTAC
9471117 ATAATATATACATGTTAAAAA
1 ATAATA-ATA-ATGTTAAAAA
*
9471138 ATAATAATAGTGTTAAAAA
1 ATAATAATAATGTTAAAAA
9471157 GACTATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (19 bp):
ATAATAATAATGTTAAAAA
Found at i:9471246 original size:13 final size:13
Alignment explanation
Indices: 9471228--9471289 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
9471218 TAAAAGTATG
9471228 TACATAATATATA
1 TACATAATATATA
9471241 TACATAATATAT-
1 TACATAATATATA
9471253 TA-A-AAGTATATA
1 TACATAA-TATATA
9471265 TACATAATATATA
1 TACATAATATATA
9471278 -A-AT-ATATATA
1 TACATAATATATA
9471288 TA
1 TA
9471290 ATATTAAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.20
11 9 0.20
12 5 0.11
13 19 0.43
14 2 0.05
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (13 bp):
TACATAATATATA
Found at i:9471267 original size:24 final size:23
Alignment explanation
Indices: 9471234--9471289 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
9471224 TATGTACATA
9471234 ATATATATACATAATATATTAAA-
1 ATATATATACATAATATA-TAAAT
9471257 AGTATATATACATAATATATAAAT
1 A-TATATATACATAATATATAAAT
9471281 ATATATATA
1 ATATATATA
9471290 ATATTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (23 bp):
ATATATATACATAATATATAAAT
Found at i:9471303 original size:19 final size:20
Alignment explanation
Indices: 9471238--9471304 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 20
9471228 TACATAATAT
* *
9471238 ATATACATAATATATTAAAA
1 ATATATATAATATATAAAAA
* *
9471258 GTATATATACATAATATATAAAT
1 ATATATATA-AT-ATATA-AAAA
9471281 ATATATATAATAT-TAAAAA
1 ATATATATAATATATAAAAA
9471300 ATATA
1 ATATA
9471305 CAATATAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
19 8 0.21
20 9 0.24
21 4 0.11
22 6 0.16
23 11 0.29
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (20 bp):
ATATATATAATATATAAAAA
Found at i:9471313 original size:22 final size:22
Alignment explanation
Indices: 9471277--9471327 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
9471267 CATAATATAT
*
9471277 AAATATA-TATATAATATTAAA
1 AAATATACAATATAATATTAAA
* *
9471298 AAATATACAATATAATGTTAAT
1 AAATATACAATATAATATTAAA
*
9471320 ATATATAC
1 AAATATAC
9471328 GTAATAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (22 bp):
AAATATACAATATAATATTAAA
Found at i:9471313 original size:41 final size:43
Alignment explanation
Indices: 9471231--9471326 Score: 101
Period size: 43 Copynumber: 2.3 Consensus size: 43
9471221 AAGTATGTAC
* * * *
9471231 ATAATATATATACATAATATATTAAAAGTATATATACATAATAT
1 ATAA-ATATATATATAATATATAAAAAATATACATACATAATAT
* *
9471275 ATAAATATATATATAATAT-TAAAAAATATACA-ATATAATGT
1 ATAAATATATATATAATATATAAAAAATATACATACATAATAT
9471316 -T-AATATATATA
1 ATAAATATATATA
9471327 CGTAATAAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
39 10 0.22
40 1 0.02
41 7 0.15
42 10 0.22
43 14 0.30
44 4 0.09
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (43 bp):
ATAAATATATATATAATATATAAAAAATATACATACATAATAT
Found at i:9471333 original size:41 final size:43
Alignment explanation
Indices: 9471231--9471333 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 43
9471221 AAGTATGTAC
* * *
9471231 ATAATATATATACATAATATATTAAAAGTATATATACATAATAT
1 ATAATATATATAC-TAATATATAAAAAATATACATACATAATAT
* *
9471275 ATAAATATATATA-TAATAT-TAAAAAATATACA-ATATAATGT
1 AT-AATATATATACTAATATATAAAAAATATACATACATAATAT
9471316 -TAATATATATACGTAATA
1 ATAATATATATAC-TAATA
9471334 AGGAGTACAA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
39 10 0.20
40 1 0.02
41 12 0.24
42 10 0.20
43 6 0.12
44 2 0.04
45 10 0.20
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (43 bp):
ATAATATATATACTAATATATAAAAAATATACATACATAATAT
Found at i:9471524 original size:19 final size:17
Alignment explanation
Indices: 9471485--9471517 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
9471475 TAAAGAAAAC
9471485 ATAAAATAATAATAGTA
1 ATAAAATAATAATAGTA
9471502 ATAAAAT-ATAATAGTA
1 ATAAAATAATAATAGTA
9471518 TGAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
ATAAAATAATAATAGTA
Found at i:9472149 original size:19 final size:18
Alignment explanation
Indices: 9472108--9472149 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
9472098 CGTCCTTAGG
*
9472108 TAAT-TTTTTTCTTTTTT
1 TAATATTTTTTATTTTTT
*
9472125 TTATATTTTTTATTTTATT
1 TAATATTTTTTATTTT-TT
9472144 TAATAT
1 TAATAT
9472150 ATATATGTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 3 0.15
18 10 0.50
19 7 0.35
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
TAATATTTTTTATTTTTT
Found at i:9472858 original size:45 final size:45
Alignment explanation
Indices: 9472807--9472960 Score: 209
Period size: 45 Copynumber: 3.4 Consensus size: 45
9472797 TTTACTCCGC
* *
9472807 TCCACTGCAACTTCAGAGAAATAAGATTTGCTATCTTCAGTCTTT
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAT
** * *
9472852 TCCACTGCAGTTTTAGGGAAATAAGATTTGCTATCTTCAGTCTGT
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAT
* * * *
9472897 TCCACTGCAGCTTCAGGGAAACAAAATTTGCTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAT
*
9472942 TCCACTGCAACTTTAGGGA
1 TCCACTGCAACTTCAGGGA
9472961 GATGAGACAT
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAT
Found at i:9473140 original size:44 final size:44
Alignment explanation
Indices: 9473075--9473578 Score: 246
Period size: 43 Copynumber: 11.5 Consensus size: 44
9473065 CAGCCTGTGA
* * * * * *
9473075 CCCTATTGCTTAGGGGTTTAAGGCCCATCACTTCTGATCTATTT
1 CCCTACTGCTTAGGGGGTTAAGACCCGTCACTTCAGATCTGTTT
* * * * *
9473119 CCCTACTGCTTAGGGGGTTAAGATCTGT-AGATTCAG-CCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCGTCA-CTTCAGATCTGTTT
* * *
9473162 CCCTACTGCTTAGGGGTTTAAGGCCTTCGT--CTTC-GATCTG-CT
1 CCCTACTGCTTAGGGGGTTAAGACC--CGTCACTTCAGATCTGTTT
* * * * * * * * *
9473204 CCACTACTGCTTAGGGAGATAAGATCTGTAAATTTAG-CCTGTTA
1 CC-CTACTGCTTAGGGGGTTAAGACCCGTCACTTCAGATCTGTTT
* * * *
9473248 CCCCACTGCTTAGGGGTTTTAGACCCTTCATCTTC-GATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCGTCA-CTTCAGATCTGTTT
* * * * *
9473292 CCCTACTGATTAGGGGGTTAAGATCTGTACATCTTCAG-CCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCGT-CA-CTTCAGATCTGTTT
* * * * * *
9473337 CCCTACTACTTAGGGGGTTAGGGCCCATCAACTT-TGATCTTTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCGTC-ACTTCAGATCTGTTT
* * * *
9473381 CCCTACTGCTTAGGGGGTTAAGATCTGTACATCTTCAG-CCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCGT-CA-CTTCAGATCTGTTT
* * * *
9473426 CCCTACTGTTTAGGGGGTTAGGGCCCATCATCTTC--ATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCGTCA-CTTCAGATCTGTTT
* * * * * * * *
9473469 CCCTACTGCTTAGAGGGTTAAGATCTGTAAATCCAG-CCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCGTCACTTCAGATCTGTTT
* * * * * *
9473512 CCCTACTACTTAGGGGTTTAAGGCCCATCTTCTT-TGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCGTC-ACTTCAGATCTGTTT
*
9473556 CCCTATTGCTTAGGGGGTTAAGA
1 CCCTACTGCTTAGGGGGTTAAGA
9473579 TCTGTAAATT
Statistics
Matches: 326, Mismatches: 111, Indels: 46
0.67 0.23 0.10
Matches are distributed among these distances:
41 2 0.01
42 5 0.02
43 131 0.40
44 120 0.37
45 66 0.20
46 2 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGACCCGTCACTTCAGATCTGTTT
Found at i:9473319 original size:87 final size:87
Alignment explanation
Indices: 9473066--9473588 Score: 667
Period size: 89 Copynumber: 6.0 Consensus size: 87
9473056 TGAAATTTCC
* * *
9473066 AGCCTGTGACCCTATTGCTTAGGGGTTTAAGGCCCATCA-CTTCTGATCTATTTCCCTACTGCTT
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTC-GATCTGTTTCCCTACTGCTT
* *
9473130 AGGGGGTTAAGATCTGTAGATTC
65 AGGGGGTTAAGATCTGTAAATTT
* * *
9473153 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTTCGTCTTCGATCTG-CTCCACTACTGCTT
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCC-CTACTGCTT
* *
9473216 AGGGAGATAAGATCTGTAAATTT
65 AGGGGGTTAAGATCTGTAAATTT
* * * * *
9473239 AGCCTGTTACCCCACTGCTTAGGGGTTTTAGACCCTTCATCTTCGATCTGTTTCCCTACTGATTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
*
9473304 GGGGGTTAAGATCTGTACATCTT
66 GGGGGTTAAGATCTGTAAAT-TT
* * * * * *
9473327 CAGCCTGTTACCCTACTACTTAGGGGGTTAGGGCCCATCAACTTTGATCTTTTTCCCTACTGCTT
1 -AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTT
*
9473392 AGGGGGTTAAGATCTGTACATCTT
65 AGGGGGTTAAGATCTGTAAAT-TT
* * *
9473416 CAGCCTGTTACCCTACTGTTTAGGGGGTTAGGGCCCATCATCTTC-ATCTGTTTCCCTACTGCTT
1 -AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTT
* **
9473480 AGAGGGTTAAGATCTGTAAATCC
65 AGGGGGTTAAGATCTGTAAATTT
* * * *
9473503 AGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCTTCTTTGATCTGTTTCCCTATTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
9473568 GGGGGTTAAGATCTGTAAATT
66 GGGGGTTAAGATCTGTAAATT
9473589 CACCAATCTA
Statistics
Matches: 381, Mismatches: 48, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
85 3 0.01
86 104 0.27
87 114 0.30
88 42 0.11
89 118 0.31
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (87 bp):
AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA
GGGGGTTAAGATCTGTAAATTT
Found at i:9473376 original size:89 final size:89
Alignment explanation
Indices: 9473065--9473587 Score: 679
Period size: 87 Copynumber: 6.0 Consensus size: 89
9473055 TTGAAATTTC
* * *
9473065 CAGCCTGTGACCCTATTGCTTAGGGGTTTAAGGCCCATCA-CTTCTGATCTATTTCCCTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTT-TGATCTGTTTCCCTACTGCT
*
9473129 TAGGGGGTTAAGATCTGTAGA--TT
65 TAGGGGGTTAAGATCTGTAAATCTT
* * * *
9473152 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTTCGTCTTCGATCTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCC-CTACTGCT
* *
9473215 TAGGGAGATAAGATCTGTAAAT-TT
65 TAGGGGGTTAAGATCTGTAAATCTT
* * * * * *
9473239 -AGCCTGTTACCCCACTGCTTAGGGGTTTTAGACCCTTCATCTTCGATCTGTTTCCCTACTGATT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTGCTT
*
9473303 AGGGGGTTAAGATCTGTACATCTT
66 AGGGGGTTAAGATCTGTAAATCTT
* * * * *
9473327 CAGCCTGTTACCCTACTACTTAGGGGGTTAGGGCCCATCAACTTTGATCTTTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTGCTT
*
9473392 AGGGGGTTAAGATCTGTACATCTT
66 AGGGGGTTAAGATCTGTAAATCTT
* * * *
9473416 CAGCCTGTTACCCTACTGTTTAGGGGGTTAGGGCCCATCATC-TTCATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTGCTT
*
9473480 AGAGGGTTAAGATCTGTAAATC--
66 AGGGGGTTAAGATCTGTAAATCTT
* * *
9473502 CAGCCTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCTTCTTTGATCTGTTTCCCTATTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTGCTT
9473567 AGGGGGTTAAGATCTGTAAAT
66 AGGGGGTTAAGATCTGTAAAT
9473588 TCACCAATCT
Statistics
Matches: 383, Mismatches: 45, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
85 3 0.01
86 101 0.26
87 118 0.31
88 45 0.12
89 116 0.30
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (89 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTGTTTCCCTACTGCTT
AGGGGGTTAAGATCTGTAAATCTT
Found at i:9473553 original size:264 final size:262
Alignment explanation
Indices: 9473065--9473584 Score: 733
Period size: 264 Copynumber: 2.0 Consensus size: 262
9473055 TTGAAATTTC
* * *
9473065 CAGCCTGTGACCCTATTGCTTAGGGGTTTAAGGCCCATCACTTCTGATCTATTTCCCTACTGCTT
1 CAGCCTGTGACCCTACTACTTAGGGGGTTAAGGCCCATCACTTCTGATCTATTTCCCTACTGCTT
* * * *
9473130 AGGGGGTTAAGATCTGTAGATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCTTCGTCTT
66 AGGGGGTTAAGATCTGTACATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCATCATCTT
** *
9473195 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAATTTAGCCTGTTACCCCACTGCTTA
131 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAATCCAGCCTGTTACCCCACTACTTA
* *
9473260 GGGGTTTTAGACCCTTCATCTTCGATCTGTTTCCCTACTGATTAGGGGGTTAAGATCTGTACATC
196 GGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGATTAGGGGGTTAAGATCTGTACATC
9473325 TT
261 TT
* * *
9473327 CAGCCTGTTACCCTACTACTTAGGGGGTTAGGGCCCATCAACTT-TGATCTTTTTCCCTACTGCT
1 CAGCCTGTGACCCTACTACTTAGGGGGTTAAGGCCCATC-ACTTCTGATCTATTTCCCTACTGCT
* *
9473391 TAGGGGGTTAAGATCTGTACATCTTCAGCCTGTTACCCTACTGTTTAGGGGGTTAGGGCCCATCA
65 TAGGGGGTTAAGATCTGTACA--TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG-CCATCA
* * *
9473456 TCTTC-ATCTGTTTCC-CTACTGCTTAGAGG-GTTAAGATCTGTAAATCCAGCCTGTTACCCTAC
127 TCTTCGATCTG-CTCCACTACTGCTTAG-GGAGATAAGATCTGTAAATCCAGCCTGTTACCCCAC
* * * * *
9473518 TACTTAGGGGTTTAAGGCCCATCTTCTTTGATCTGTTTCCCTATTGCTTAGGGGGTTAAGATCTG
190 TACTTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGATTAGGGGGTTAAGATCTG
9473583 TA
255 TA
9473585 AATTCACCAA
Statistics
Matches: 227, Mismatches: 25, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
262 73 0.32
263 4 0.02
264 136 0.60
265 14 0.06
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (262 bp):
CAGCCTGTGACCCTACTACTTAGGGGGTTAAGGCCCATCACTTCTGATCTATTTCCCTACTGCTT
AGGGGGTTAAGATCTGTACATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCATCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAATCCAGCCTGTTACCCCACTACTTA
GGGGTTTAAGACCCATCATCTTCGATCTGTTTCCCTACTGATTAGGGGGTTAAGATCTGTACATC
TT
Found at i:9485753 original size:18 final size:18
Alignment explanation
Indices: 9485729--9485788 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
9485719 ATGTATTAAA
9485729 ATATACGTAATAAAAAAT
1 ATATACGTAATAAAAAAT
*
9485747 GTATACGTAGTATATAAAAAAGT
1 ATATAC---GTA-ATAAAAAA-T
*
9485770 ATATACATAATAAAAAAT
1 ATATACGTAATAAAAAAT
9485788 A
1 A
9485789 CAATATTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
18 7 0.21
19 8 0.24
20 2 0.06
21 3 0.09
22 8 0.24
23 6 0.18
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (18 bp):
ATATACGTAATAAAAAAT
Found at i:9485882 original size:20 final size:18
Alignment explanation
Indices: 9485857--9485895 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9485847 AACTATTTAC
9485857 ATAATATATACATGTTAAAA
1 ATAATA-ATA-ATGTTAAAA
*
9485877 ATAATAATAGTGTTAAAA
1 ATAATAATAATGTTAAAA
9485895 A
1 A
9485896 GACTATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (18 bp):
ATAATAATAATGTTAAAA
Found at i:9485983 original size:11 final size:11
Alignment explanation
Indices: 9485967--9486029 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
9485957 TAAAAGTATG
9485967 TACATAATATA
1 TACATAATATA
9485978 TACATAATATA
1 TACATAATATA
9485989 TTA-A-AAGTATA
1 -TACATAA-TATA
*
9486000 TACA-CATA-A
1 TACATAATATA
*
9486009 TATATAATATA
1 TACATAATATA
*
9486020 TATATAATAT
1 TACATAATAT
9486030 TAAAAAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
9 4 0.09
10 9 0.20
11 29 0.66
12 2 0.05
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (11 bp):
TACATAATATA
Found at i:9485991 original size:33 final size:34
Alignment explanation
Indices: 9485953--9486024 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
9485943 ATACATGACA
*
9485953 ATATTAAAAGTATGT-ACATAATATATACATA-AT
1 ATATTAAAAGTATATAACATAATATATA-ATATAT
9485986 ATATTAAAAGTATATACACATAATATATAATATAT
1 ATATTAAAAGTATATA-ACATAATATATAATATAT
9486021 ATAT
1 ATAT
9486025 AATATTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
33 14 0.40
34 3 0.09
35 18 0.51
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (34 bp):
ATATTAAAAGTATATAACATAATATATAATATAT
Found at i:9486030 original size:40 final size:43
Alignment explanation
Indices: 9485970--9486063 Score: 115
Period size: 40 Copynumber: 2.3 Consensus size: 43
9485960 AAGTATGTAC
* **
9485970 ATAATATATACATAATATATTAAAAGTATATAC-ACATAATAT
1 ATAATATATATATAATATATTAAAAAAATATACAACATAATAT
* *
9486012 ATAATATATATAT-A-ATATTAAAAAAATATACAATATAATGT
1 ATAATATATATATAATATATTAAAAAAATATACAACATAATAT
9486053 -TAATATATATA
1 ATAATATATATA
9486064 CGTAATACGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 26 0.57
41 8 0.17
42 12 0.26
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.37
Consensus pattern (43 bp):
ATAATATATATATAATATATTAAAAAAATATACAACATAATAT
Found at i:9490052 original size:26 final size:26
Alignment explanation
Indices: 9490023--9490075 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
9490013 TCAAACATGC
*
9490023 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
9490049 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
9490075 A
1 A
9490076 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:9491597 original size:26 final size:26
Alignment explanation
Indices: 9491561--9491670 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
9491551 CATGAAATTC
9491561 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
9491587 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
9491613 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
9491639 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
9491665 TTATCA
1 TTATCA
9491671 AATTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:9492340 original size:23 final size:23
Alignment explanation
Indices: 9492313--9492434 Score: 158
Period size: 23 Copynumber: 5.1 Consensus size: 23
9492303 TTATTCATAC
9492313 ATAAATAATTATATTAATCTAAT
1 ATAAATAATTATATTAATCTAAT
9492336 ATAAAAATAATTATATTAAATCTAAT
1 AT--AAATAATTATATT-AATCTAAT
9492362 ATAAA-ATATTATATTAATCTAAT
1 ATAAATA-ATTATATTAATCTAAT
9492385 ATAAA-ATATTATATTAATCTAAT
1 ATAAATA-ATTATATTAATCTAAT
*
9492408 ATAAAAATAATTATATTAATTTAAT
1 AT--AAATAATTATATTAATCTAAT
9492433 AT
1 AT
9492435 GAAAATAAGT
Statistics
Matches: 91, Mismatches: 1, Indels: 12
0.88 0.01 0.12
Matches are distributed among these distances:
23 36 0.40
24 11 0.12
25 33 0.36
26 11 0.12
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
ATAAATAATTATATTAATCTAAT
Found at i:9492345 original size:25 final size:24
Alignment explanation
Indices: 9492315--9492442 Score: 197
Period size: 25 Copynumber: 5.2 Consensus size: 24
9492305 ATTCATACAT
9492315 AAATAATTATATTAATCTAATATAA
1 AAATAATTATATTAATCTAATAT-A
9492340 AAATAATTATATTAAATCTAATATA
1 AAATAATTATATT-AATCTAATATA
9492365 AAAT-ATTATATTAATCTAATATA
1 AAATAATTATATTAATCTAATATA
9492388 AAAT-ATTATATTAATCTAATATAA
1 AAATAATTATATTAATCTAATAT-A
*
9492412 AAATAATTATATTAATTTAATATGA
1 AAATAATTATATTAATCTAATAT-A
9492437 AAATAA
1 AAATAA
9492443 GTGCATATAT
Statistics
Matches: 98, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
23 33 0.34
24 13 0.13
25 42 0.43
26 10 0.10
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (24 bp):
AAATAATTATATTAATCTAATATA
Found at i:9493165 original size:12 final size:12
Alignment explanation
Indices: 9493148--9493175 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
9493138 TTACACAATT
9493148 AACAATTAAATA
1 AACAATTAAATA
9493160 AACAATTAAATA
1 AACAATTAAATA
9493172 AACA
1 AACA
9493176 CAAGTGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (12 bp):
AACAATTAAATA
Found at i:9495876 original size:112 final size:113
Alignment explanation
Indices: 9495672--9495877 Score: 281
Period size: 112 Copynumber: 1.8 Consensus size: 113
9495662 TTTTTTTTGT
* * *
9495672 TTTTCTTTTCCTAATAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACTAACCACCCCTC
1 TTTTCTTTTCCTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACCAACCAACCCTC
* * * *
9495737 TCCAATTACTCAGCCTAACATACTCTTAATTTATTATTTTTATATATG
66 CCCAATTACTCAACCCAACACACTCTTAATTTATTATTTTTATATATG
* * *
9495785 TTTT-TTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACCAA-GAACCTTA
1 TTTTCTTTTCCTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACCAACCAACCCT-
* *
9495848 CCCCGATTACTCAACCCAACACATTCTTAA
65 CCCCAATTACTCAACCCAACACACTCTTAA
9495878 AAGTTTTTGT
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
111 4 0.05
112 72 0.90
113 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (113 bp):
TTTTCTTTTCCTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAACCAACCAACCCTC
CCCAATTACTCAACCCAACACACTCTTAATTTATTATTTTTATATATG
Found at i:9497247 original size:27 final size:27
Alignment explanation
Indices: 9497216--9497272 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
9497206 ATGTCAGAAG
9497216 TTAATCCCTTTTAAGTC-GAAAATAGTC
1 TTAATCCCTTTTAAGTCAG-AAATAGTC
9497243 TTAATCCCTTTTAAGTCAGAAATAGTC
1 TTAATCCCTTTTAAGTCAGAAATAGTC
9497270 TTA
1 TTA
9497273 TCATTCTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (27 bp):
TTAATCCCTTTTAAGTCAGAAATAGTC
Found at i:9503499 original size:21 final size:21
Alignment explanation
Indices: 9503475--9503521 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9503465 TACACAGCTG
*
9503475 TGTGACTAAGGCATAAGCTCA
1 TGTGACTAAGGCACAAGCTCA
* *
9503496 TGTGACTAAGGTACAAGCTCG
1 TGTGACTAAGGCACAAGCTCA
9503517 TGTGA
1 TGTGA
9503522 AAAAGGGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (21 bp):
TGTGACTAAGGCACAAGCTCA
Found at i:9503697 original size:21 final size:21
Alignment explanation
Indices: 9503671--9503717 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9503661 CATGTGATTG
*
9503671 TGTGACTAAGGCATAAGCTCA
1 TGTGACTAAGGCACAAGCTCA
* *
9503692 TGTGACTAAGGTACAAGCTCG
1 TGTGACTAAGGCACAAGCTCA
9503713 TGTGA
1 TGTGA
9503718 AAAAGGGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (21 bp):
TGTGACTAAGGCACAAGCTCA
Found at i:9503807 original size:196 final size:196
Alignment explanation
Indices: 9503473--9503866 Score: 779
Period size: 196 Copynumber: 2.0 Consensus size: 196
9503463 AATACACAGC
9503473 TGTGTGACTAAGGCATAAGCTCATGTGACTAAGGTACAAGCTCGTGTGAAAAAGGGACACGATAG
1 TGTGTGACTAAGGCATAAGCTCATGTGACTAAGGTACAAGCTCGTGTGAAAAAGGGACACGATAG
*
9503538 GCAAGCCCGTGTGACTGGGGTATATAGCCATGTGGACAAACCATGTAACTCTTTGAATCATGTGT
66 GCAAGCCCGTGTGACTGGGGTATACAGCCATGTGGACAAACCATGTAACTCTTTGAATCATGTGT
9503603 AAAAATAACACAACTTAAGGTGCAGGGAAGACATGACCGTGTGGCTGGAGGACACGCCCATGTGA
131 AAAAATAACACAACTTAAGGTGCAGGGAAGACATGACCGTGTGGCTGGAGGACACGCCCATGTGA
9503668 T
196 T
9503669 TGTGTGACTAAGGCATAAGCTCATGTGACTAAGGTACAAGCTCGTGTGAAAAAGGGACACGATAG
1 TGTGTGACTAAGGCATAAGCTCATGTGACTAAGGTACAAGCTCGTGTGAAAAAGGGACACGATAG
9503734 GCAAGCCCGTGTGACTGGGGTATACAGCCATGTGGACAAACCATGTAACTCTTTGAATCATGTGT
66 GCAAGCCCGTGTGACTGGGGTATACAGCCATGTGGACAAACCATGTAACTCTTTGAATCATGTGT
9503799 AAAAATAACACAACTTAAGGTGCAGGGAAGACATGACCGTGTGGCTGGAGGACACGCCCATGTGA
131 AAAAATAACACAACTTAAGGTGCAGGGAAGACATGACCGTGTGGCTGGAGGACACGCCCATGTGA
9503864 T
196 T
9503865 TG
1 TG
9503867 AGATATACGG
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 197 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (196 bp):
TGTGTGACTAAGGCATAAGCTCATGTGACTAAGGTACAAGCTCGTGTGAAAAAGGGACACGATAG
GCAAGCCCGTGTGACTGGGGTATACAGCCATGTGGACAAACCATGTAACTCTTTGAATCATGTGT
AAAAATAACACAACTTAAGGTGCAGGGAAGACATGACCGTGTGGCTGGAGGACACGCCCATGTGA
T
Found at i:9507722 original size:26 final size:26
Alignment explanation
Indices: 9507685--9507768 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
9507675 TGATACAAAT
* *
9507685 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9507711 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9507737 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9507763 TGATAA
1 TGATAA
9507769 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9509281 original size:25 final size:26
Alignment explanation
Indices: 9509240--9509291 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
9509230 AATTACTGTT
9509240 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
9509265 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
9509291 T
1 T
9509292 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:9509785 original size:137 final size:137
Alignment explanation
Indices: 9509539--9509825 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
9509529 GAGTAGTCTC
9509539 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
9509604 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
9509669 ACTGTTA
131 ACTGTTA
9509676 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
9509741 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
9509806 ACTGTTA
131 ACTGTTA
**
9509813 CCTGAATGGGCTT
1 CCCAAATGGGCTT
9509826 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:9513648 original size:26 final size:26
Alignment explanation
Indices: 9513611--9513694 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
9513601 TGATACAAAT
* *
9513611 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9513637 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9513663 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9513689 TGATAA
1 TGATAA
9513695 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9515720 original size:137 final size:137
Alignment explanation
Indices: 9515474--9515760 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
9515464 GAGTAGTCTC
*
9515474 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACGGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
9515539 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
9515604 ACTGTTA
131 ACTGTTA
9515611 CCCAAATGGGCTTGCATATGTTTACGGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACGGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
9515676 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
9515741 ACTGTTA
131 ACTGTTA
**
9515748 CCTGAATGGGCTT
1 CCCAAATGGGCTT
9515761 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACGGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:9516717 original size:43 final size:43
Alignment explanation
Indices: 9516669--9516751 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
9516659 CCTCAACATC
9516669 TCAATATATACAAAACCTAAACACTTCTACTTGTTTTCATTAT
1 TCAATATATACAAAACCTAAACACTTCTACTTGTTTTCATTAT
9516712 TCAATATATACAAAACCTAAACACTTCTACTTGTTTTCAT
1 TCAATATATACAAAACCTAAACACTTCTACTTGTTTTCAT
9516752 GAATAATGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (43 bp):
TCAATATATACAAAACCTAAACACTTCTACTTGTTTTCATTAT
Found at i:9517511 original size:22 final size:22
Alignment explanation
Indices: 9517486--9517530 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9517476 TATATATGAA
9517486 GAACAAAATTAATTTAGGTTTT
1 GAACAAAATTAATTTAGGTTTT
9517508 GAACAAAATTAATTTAGGTTTT
1 GAACAAAATTAATTTAGGTTTT
9517530 G
1 G
9517531 CATTTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (22 bp):
GAACAAAATTAATTTAGGTTTT
Found at i:9517847 original size:15 final size:16
Alignment explanation
Indices: 9517816--9517852 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
9517806 CGATAGCGAC
9517816 ATTAAACTTCAATTAA
1 ATTAAACTTCAATTAA
9517832 ATTAAACTTC-ATTAA
1 ATTAAACTTCAATTAA
9517847 ATTAAA
1 ATTAAA
9517853 GTTCTAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTAAACTTCAATTAA
Found at i:9520835 original size:32 final size:32
Alignment explanation
Indices: 9520798--9520895 Score: 151
Period size: 32 Copynumber: 3.0 Consensus size: 32
9520788 ACTATTCCAT
9520798 TATTGGTAAAATTGCTATATGACCTTTTAAAA
1 TATTGGTAAAATTGCTATATGACCTTTTAAAA
*
9520830 TATTGGTAAAATTGCCATATGACCTTTTAAAA
1 TATTGGTAAAATTGCTATATGACCTTTTAAAA
* * *
9520862 TATTGGTAAAACTGCTATTTGATCCTTCTAAAA
1 TATTGGTAAAATTGCTATATGA-CCTTTTAAAA
9520895 T
1 T
9520896 TTATAATTCA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 50 0.83
33 10 0.17
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (32 bp):
TATTGGTAAAATTGCTATATGACCTTTTAAAA
Found at i:9526127 original size:17 final size:17
Alignment explanation
Indices: 9526105--9526137 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9526095 GCAGGTTTGG
*
9526105 TTTAAAATGGTTTAAAA
1 TTTAAAAGGGTTTAAAA
9526122 TTTAAAAGGGTTTAAA
1 TTTAAAAGGGTTTAAA
9526138 TAAAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.39
Consensus pattern (17 bp):
TTTAAAAGGGTTTAAAA
Found at i:9533124 original size:46 final size:46
Alignment explanation
Indices: 9533066--9533154 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
9533056 TATCATGGAA
* * *
9533066 ACTTATTTGTACGAGTAAGTT-CTCCTTAAGCATCAACTTATTCGGG
1 ACTTATTCGTACGAATAAGTTGCTCCTAAAGCA-CAACTTATTCGGG
*
9533112 ACTTATTCGTACGAATAAGTTGTTCCTAAAGCACAACTTATTC
1 ACTTATTCGTACGAATAAGTTGCTCCTAAAGCACAACTTATTC
9533155 AAAACTAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
46 29 0.76
47 9 0.24
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (46 bp):
ACTTATTCGTACGAATAAGTTGCTCCTAAAGCACAACTTATTCGGG
Found at i:9538663 original size:27 final size:27
Alignment explanation
Indices: 9538625--9538676 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
9538615 CCCATATGTT
9538625 ATATTTTATAGTATTAGTATTAGATAC
1 ATATTTTATAGTATTAGTATTAGATAC
9538652 ATATTTTATAGTATTAGTATTAGAT
1 ATATTTTATAGTATTAGTATTAGAT
9538677 TCTAAATTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.50
Consensus pattern (27 bp):
ATATTTTATAGTATTAGTATTAGATAC
Found at i:9539652 original size:60 final size:61
Alignment explanation
Indices: 9539510--9539654 Score: 154
Period size: 60 Copynumber: 2.4 Consensus size: 61
9539500 TCCCTCTAAT
* * * *
9539510 ATTTAC-ACATCTTATCAATTT-GATCCTAAATATAAAAATTTAACAAATTTAGCTCTCAAT
1 ATTTACAAAATCTTATCAATTTAG-TCCTAAATATAAAAAGTCAACAAATTTAGCTCTCAAC
* * * * * *
9539570 GTTTACAAAAT-TTGTCATTTTAGTTCTAATTATAAAAAGTCAATAAATTTAGCTCTCAAC
1 ATTTACAAAATCTTATCAATTTAGTCCTAAATATAAAAAGTCAACAAATTTAGCTCTCAAC
*
9539630 ATTTATAAAATCTT-TCAATTTAGTC
1 ATTTACAAAATCTTATCAATTTAGTC
9539655 TTAACTTTGA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
60 62 0.91
61 6 0.09
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (61 bp):
ATTTACAAAATCTTATCAATTTAGTCCTAAATATAAAAAGTCAACAAATTTAGCTCTCAAC
Found at i:9541960 original size:10 final size:10
Alignment explanation
Indices: 9541945--9541971 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9541935 CCAGTATTAA
9541945 TTTTTTATAT
1 TTTTTTATAT
9541955 TTTTTTATAT
1 TTTTTTATAT
9541965 TTTTTTA
1 TTTTTTA
9541972 AAAAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTATAT
Found at i:9547050 original size:25 final size:24
Alignment explanation
Indices: 9547022--9547088 Score: 91
Period size: 25 Copynumber: 2.8 Consensus size: 24
9547012 AAATATATAC
*
9547022 ATAGTCTTAAAAATATGTACATAAT
1 ATAG-CTTAAAAATATATACATAAT
*
9547047 ATAGCGTTAAAAATACATACATAAT
1 ATAGC-TTAAAAATATATACATAAT
9547072 ATAG-TTAAAAATATATA
1 ATAGCTTAAAAATATATA
9547089 TATACATAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 12 0.32
24 1 0.03
25 25 0.66
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (24 bp):
ATAGCTTAAAAATATATACATAAT
Found at i:9547105 original size:32 final size:31
Alignment explanation
Indices: 9547059--9547122 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
9547049 AGCGTTAAAA
* *
9547059 ATACATACATAATATAGTTA-AAAATATATAT
1 ATACATACATAATAT-GTAAGAAAAAATATAT
*
9547090 ATACATAAGATAATATGTAAGAAAAAATATAT
1 ATACAT-ACATAATATGTAAGAAAAAATATAT
9547122 A
1 A
9547123 AATAATACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (31 bp):
ATACATACATAATATGTAAGAAAAAATATAT
Found at i:9547253 original size:23 final size:23
Alignment explanation
Indices: 9547183--9547397 Score: 177
Period size: 23 Copynumber: 8.8 Consensus size: 23
9547173 AAACGACTAT
*
9547183 TAATAATACTACATAAATATATACA
1 TAATAATATTA-A-AAATATATACA
* *
9547208 T-ATATATATTAAAGATAAATACA
1 TAATA-ATATTAAAAATATATACA
* *
9547231 TAATAATATTAAAAGTATGTACA
1 TAATAATATTAAAAATATATACA
* *
9547254 TAATATAGTGTTAAAAATACATACA
1 TAATA-A-TATTAAAAATATATACA
9547279 TAATATAGTTATTAAAAAATATATACA
1 TAATA-A--TATT-AAAAATATATACA
9547306 TAAGATAATA-TAAAAATATATACA
1 T-A-ATAATATTAAAAATATATACA
* *
9547330 TGAAATAGTATAAAAAATATATA-A
1 T--AATAATATTAAAAATATATACA
9547354 CTAATAATATTAAAAATATATACA
1 -TAATAATATTAAAAATATATACA
9547378 TAAT-ATATATAAAACATATA
1 TAATAATAT-TAAAA-ATATA
9547398 CGATATATAT
Statistics
Matches: 158, Mismatches: 18, Indels: 29
0.77 0.09 0.14
Matches are distributed among these distances:
22 4 0.03
23 56 0.35
24 34 0.22
25 41 0.26
26 5 0.03
27 13 0.08
28 2 0.01
29 3 0.02
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (23 bp):
TAATAATATTAAAAATATATACA
Found at i:9547396 original size:11 final size:10
Alignment explanation
Indices: 9547293--9547397 Score: 57
Period size: 11 Copynumber: 8.9 Consensus size: 10
9547283 ATAGTTATTA
9547293 AAAAATATAT
1 AAAAATATAT
9547303 ACATAAGATAATAT
1 A-A-AA-AT-ATAT
9547317 AAAAATATAT
1 AAAAATATAT
9547327 ACATGAAATAGTAT
1 A-A--AAATA-TAT
9547341 AAAAAATATAT
1 -AAAAATATAT
*
9547352 AACTAATAATATT
1 AA-AAAT-ATA-T
9547365 AAAAATATAT
1 AAAAATATAT
9547375 ACATAATATATAT
1 A-A-AA-ATATAT
9547388 AAAACATATA
1 AAAA-ATATA
9547398 CGATATATAT
Statistics
Matches: 77, Mismatches: 3, Indels: 29
0.71 0.03 0.27
Matches are distributed among these distances:
10 10 0.13
11 21 0.27
12 18 0.23
13 18 0.23
14 9 0.12
15 1 0.01
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAATATAT
Found at i:9547531 original size:18 final size:18
Alignment explanation
Indices: 9547508--9547546 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
9547498 ACTAGTACTA
* *
9547508 ATAATATTAATAATAGAT
1 ATAATAATAATAATAAAT
9547526 ATAATAATAATAATAAAT
1 ATAATAATAATAATAAAT
9547544 ATA
1 ATA
9547547 TATGCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
ATAATAATAATAATAAAT
Found at i:9547632 original size:19 final size:19
Alignment explanation
Indices: 9547581--9547625 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
9547571 AGACATTTAA
*
9547581 AAAAT-ATAATTA-AATAT
1 AAAATAATAATAATAATAT
*
9547598 AATATAATAATAATAATAT
1 AAAATAATAATAATAATAT
9547617 AAAATAATA
1 AAAATAATA
9547626 GTGATAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 4 0.17
18 6 0.26
19 13 0.57
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATAATAATAATAATAT
Found at i:9547632 original size:25 final size:25
Alignment explanation
Indices: 9547586--9547642 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
9547576 TTTAAAAAAT
*
9547586 ATAAT-TAAATATAATATAATAATA
1 ATAATATAAATATAATATAATAACA
*
9547610 ATAATATAAA-ATAATAGTGATAACA
1 ATAATATAAATATAATA-TAATAACA
9547635 ATAATATA
1 ATAATATA
9547643 TAACATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (25 bp):
ATAATATAAATATAATATAATAACA
Found at i:9549299 original size:45 final size:42
Alignment explanation
Indices: 9549249--9549404 Score: 143
Period size: 44 Copynumber: 3.5 Consensus size: 42
9549239 ATTCGTTGTG
*
9549249 ATCTGCTCTTCTGCAACTTCAGAGAGATGAGATCTGGTATCTTCA
1 ATCTGCTCTACTGCAACTTCAG-GAGATGA-ATCT-GTATCTTCA
* * * *
9549294 ATCTGCTCTGCTACAACTTCAGGAAGATGAAACTTGTAACTTCA
1 ATCTGCTCTACTGCAACTTCAGG-AGATGAATC-TGTATCTTCA
* * *
9549338 ACCTGCTCTACTGCAACTTCAGGGAGGCA-AAATCTGTATCTTCG
1 ATCTGCTCTACTGCAACTTCA-GGA-G-ATGAATCTGTATCTTCA
* *
9549382 ATCAGCTCCACTGCAACTTCAGG
1 ATCTGCTCTACTGCAACTTCAGG
9549405 GAGGAAAAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
43 2 0.02
44 56 0.61
45 33 0.36
46 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (42 bp):
ATCTGCTCTACTGCAACTTCAGGAGATGAATCTGTATCTTCA
Found at i:9549395 original size:44 final size:45
Alignment explanation
Indices: 9549342--9549436 Score: 156
Period size: 44 Copynumber: 2.1 Consensus size: 45
9549332 ACTTCAACCT
* *
9549342 GCTCTACTGCAACTTCAGGGAGGCAAAATCT-GTATCTTCGATCA
1 GCTCCACTGCAACTTCAGGGAGGAAAAATCTGGTATCTTCGATCA
*
9549386 GCTCCACTGCAACTTCAGGGAGGAAAAATCTGGTGTCTTCGATCA
1 GCTCCACTGCAACTTCAGGGAGGAAAAATCTGGTATCTTCGATCA
9549431 GCTCCA
1 GCTCCA
9549437 ACCTTTATTC
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 29 0.62
45 18 0.38
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGGAAAAATCTGGTATCTTCGATCA
Done.