Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 388 of 444
Found at i:112519776 original size:21 final size:22
Alignment explanation
Indices: 112519745--112519785 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
112519735 GAATGTATTG
*
112519745 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
112519767 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
112519786 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:112526832 original size:2 final size:2
Alignment explanation
Indices: 112526825--112526860 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
112526815 CACATATGTT
112526825 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
112526861 TCAACCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:112531971 original size:23 final size:25
Alignment explanation
Indices: 112531921--112531974 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
112531911 TGAGGCTATG
112531921 TTGGTATGCTAGCCTAGTTTATATT
1 TTGGTATGCTAGCCTAGTTTATATT
*
112531946 TTGGTATG-T-GCTTAGTTTCATA-T
1 TTGGTATGCTAGCCTAGTTT-ATATT
112531969 TTGGTA
1 TTGGTA
112531975 ACTTTAGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 15 0.56
24 4 0.15
25 8 0.30
ACGTcount: A:0.19, C:0.09, G:0.22, T:0.50
Consensus pattern (25 bp):
TTGGTATGCTAGCCTAGTTTATATT
Found at i:112532675 original size:49 final size:49
Alignment explanation
Indices: 112532602--112532697 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
112532592 CTAGAAGGGA
*
112532602 TAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAATTTAGCAATGTG
1 TAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAATTTAGAAATGTG
* *
112532651 TAAATAGTGATAAGAGTGTCGACAGTGGAAGACTAAGTTTAGAAATG
1 TAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAATTTAGAAATG
112532698 CATAGCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.26
Consensus pattern (49 bp):
TAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAATTTAGAAATGTG
Found at i:112536474 original size:27 final size:21
Alignment explanation
Indices: 112536422--112536474 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
112536412 AACGATTTAT
112536422 TAAGTTCAAGTGGTAAGACAC
1 TAAGTTCAAGTGGTAAGACAC
112536443 TAAGTTCAAGTGGTAAGACAC
1 TAAGTTCAAGTGGTAAGACAC
* *
112536464 TGAGGTCAAGT
1 TAAGTTCAAGT
112536475 AGTTTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (21 bp):
TAAGTTCAAGTGGTAAGACAC
Found at i:112538907 original size:20 final size:20
Alignment explanation
Indices: 112538882--112538920 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
112538872 GCCATATGGT
112538882 TTGGTTTGTG-TTATGGTATC
1 TTGG-TTGTGATTATGGTATC
112538902 TTGGTTGTGATTATGGTAT
1 TTGGTTGTGATTATGGTAT
112538921 TTTGAATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.13, C:0.03, G:0.31, T:0.54
Consensus pattern (20 bp):
TTGGTTGTGATTATGGTATC
Found at i:112542912 original size:21 final size:21
Alignment explanation
Indices: 112542886--112542966 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
112542876 TGATCAGTAT
112542886 ACGACACATAAAGTGCCTAAA
1 ACGACACATAAAGTGCCTAAA
** * * *
112542907 ACGACACACGAGGTGCCTGAT
1 ACGACACATAAAGTGCCTAAA
* *
112542928 ACGACAC--GAGGTGCCTGAAA
1 ACGACACATAAAGTGCCT-AAA
112542948 TACGACACATAAAGTGCCT
1 -ACGACACATAAAGTGCCT
112542967 GATCGATAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
19 9 0.19
20 1 0.02
21 30 0.64
23 7 0.15
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (21 bp):
ACGACACATAAAGTGCCTAAA
Found at i:112542936 original size:19 final size:20
Alignment explanation
Indices: 112542912--112542955 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
112542902 CTAAAACGAC
112542912 ACACGAGGTGCCTG-ATACG
1 ACACGAGGTGCCTGAATACG
112542931 ACACGAGGTGCCTGAAATACG
1 ACACGAGGTGCCTG-AATACG
112542952 ACAC
1 ACAC
112542956 ATAAAGTGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 14 0.61
21 9 0.39
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.14
Consensus pattern (20 bp):
ACACGAGGTGCCTGAATACG
Found at i:112543372 original size:15 final size:14
Alignment explanation
Indices: 112543332--112543387 Score: 85
Period size: 14 Copynumber: 3.9 Consensus size: 14
112543322 CATATATATT
112543332 ATATAATTCAATCA
1 ATATAATTCAATCA
112543346 ATATAATTCAATCA
1 ATATAATTCAATCA
*
112543360 AAATAATTTCAATCA
1 ATATAA-TTCAATCA
112543375 ATATAAATTCAAT
1 ATAT-AATTCAAT
112543388 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 19 0.50
15 17 0.45
16 2 0.05
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATAATTCAATCA
Found at i:112544649 original size:5 final size:5
Alignment explanation
Indices: 112544641--112544672 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
112544631 TCTTTAGTTT
112544641 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
112544673 TAAACATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:112545848 original size:40 final size:39
Alignment explanation
Indices: 112545683--112545866 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
112545673 AAATTGAATG
* * *
112545683 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
112545723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
112545763 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
112545803 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
112545842 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
112545867 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:112545891 original size:80 final size:81
Alignment explanation
Indices: 112545723--112545911 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
112545713 GCTGGAAATT
* * * *
112545723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
112545788 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
112545804 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
112545867 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
112545883 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
112545912 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:112553958 original size:40 final size:39
Alignment explanation
Indices: 112553793--112553976 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
112553783 AAATTGAATG
* * *
112553793 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
112553833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
112553873 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
112553913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
112553952 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
112553977 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:112554001 original size:80 final size:81
Alignment explanation
Indices: 112553833--112554021 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
112553823 GCTGGAAATT
* * * *
112553833 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
112553898 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
112553914 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
112553977 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
112553993 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
112554022 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:112558920 original size:46 final size:47
Alignment explanation
Indices: 112558774--112559040 Score: 219
Period size: 46 Copynumber: 5.7 Consensus size: 47
112558764 AGGGTATAAT
* * *
112558774 GCCGATGCCATGTCCTAGACATGTTCTTACACTAGCTCTCTCATATTCG-T
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTAG--CTCTCAT-CTCGAG
* * * *
112558824 GCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-ATA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGA-G
*
112558870 GCCGATG-CATGTCTCAGACATGTCTTACACTAGCT-TACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * ** * *
112558916 GCCGA-GGCATGTCCCAGACATGCCTTACACTAGCTCTTGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
112558962 GCCGATGCCATGTCCAATACATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTAGCTCTCAT-CTCGAG
112559010 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
112559041 GGCAAACAAA
Statistics
Matches: 175, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 66 0.38
47 29 0.17
48 21 0.12
49 2 0.01
50 29 0.17
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:112558990 original size:94 final size:90
Alignment explanation
Indices: 112558771--112559041 Score: 257
Period size: 94 Copynumber: 2.9 Consensus size: 90
112558761 CATAGGGTAT
* * * *
112558771 AATGCCGATGCCATGTCCTAGACATGTTCTTACACTAGCTCTCTCATATTCGTGCTGATGCCATG
1 AATGCCGATGCCATGTCC-AGACATG-TCTTACACTAG--CTCTCATAATCGGGCCGA-GGCATG
112558836 TCCCAGACATGGTCTTACACTGACACATCTC
61 TCCCAGACAT-GTCTTACACTGACACATCTC
*
112558867 -ATAGCCGATG-CATGTCTCAGACATGTCTTACACTAGCT-TACAT-CTCGAGGCCGAGGCATGT
1 AAT-GCCGATGCCATGTC-CAGACATGTCTTACACTAGCTCT-CATAATCG-GGCCGAGGCATGT
* * *
112558928 CCCAGACATGCCTTACACT-AGCTCTTGTCTC
62 CCCAGACATGTCTTACACTGA-CAC--ATCTC
* * *
112558959 AATGCCGATGCCATGTCCAATACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTC
1 AATGCCGATGCCATGTCC-AGACATG-TCTTACACTAGCTCTCATAATCG-GGCCGAGGCATGTC
112559023 CCAGACATGTCTTACACTG
63 CCAGACATGTCTTACACTG
112559042 GCAAACAAAT
Statistics
Matches: 148, Mismatches: 13, Indels: 29
0.78 0.07 0.15
Matches are distributed among these distances:
89 1 0.01
90 11 0.07
91 19 0.13
92 21 0.14
93 14 0.09
94 57 0.39
95 17 0.11
96 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (90 bp):
AATGCCGATGCCATGTCCAGACATGTCTTACACTAGCTCTCATAATCGGGCCGAGGCATGTCCCA
GACATGTCTTACACTGACACATCTC
Found at i:112561756 original size:46 final size:46
Alignment explanation
Indices: 112561670--112561889 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
112561660 ACATATTCGT
* * *
112561670 GCCGATGCCATGTCCCAAATATGGTCTTACACTGAC-ACATCTCTTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCTTAG
* *
112561716 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTC-GAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCTTAG
* * *
112561762 GCCGATGCATGTCCCAGGCATGTCTTACACTAGCT-C-TCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATC-TCTT-AG
* * *
112561808 GCCGATGCCATGTCCCAGGCATGGTCTTACACTGGCTCACATAAT-GT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-ACAT-CTCTTAG
* * *
112561856 TCTGATGCATGTCCCAGACATGTCTTACTCTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
112561890 ACACAAATAA
Statistics
Matches: 144, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.01
44 15 0.10
45 13 0.09
46 65 0.45
47 27 0.19
48 18 0.12
50 2 0.01
51 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCTTAG
Found at i:112565833 original size:23 final size:23
Alignment explanation
Indices: 112565761--112565835 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 23
112565751 CCTGATCAGT
** *
112565761 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
*
112565783 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
*
112565803 ATATGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
112565826 ATACGACACA
1 ATACGACACA
112565836 TAAAGTGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.02
21 33 0.75
22 1 0.02
23 9 0.20
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:112565843 original size:23 final size:23
Alignment explanation
Indices: 112565761--112565847 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 23
112565751 CCTGATCAGT
*
112565761 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * *
112565783 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* * *
112565803 ATATGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
112565826 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
112565848 TCGATAAAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 33 0.62
22 1 0.02
23 18 0.34
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:112566240 original size:15 final size:15
Alignment explanation
Indices: 112566215--112566272 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
112566205 TCATATATAT
*
112566215 TATATAATTCAATTAA
1 TATA-AATTCAATCAA
112566231 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
112566246 AATAATTTCAATCAA
1 TATAAATTCAATCAA
112566261 TATAAATTCAAT
1 TATAAATTCAAT
112566273 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:112567545 original size:5 final size:5
Alignment explanation
Indices: 112567537--112567563 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
112567527 TCTTTAGTTT
112567537 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
112567564 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:112567599 original size:8 final size:8
Alignment explanation
Indices: 112567586--112567614 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
112567576 TATCTTTATT
112567586 ATATAATA
1 ATATAATA
112567594 ATATAATA
1 ATATAATA
112567602 ATATAATA
1 ATATAATA
112567610 ATATA
1 ATATA
112567615 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:112572171 original size:21 final size:21
Alignment explanation
Indices: 112572141--112572194 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 21
112572131 TAAAACACAC
112572141 GATAC-ACACACGAGGTGCCT
1 GATACGACACACGAGGTGCCT
112572161 GATACGACACACGAGGTGCCT
1 GATACGACACACGAGGTGCCT
112572182 GAAATACGACACA
1 G--ATACGACACA
112572195 TAAAGTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.16
21 16 0.52
23 10 0.32
ACGTcount: A:0.35, C:0.28, G:0.24, T:0.13
Consensus pattern (21 bp):
GATACGACACACGAGGTGCCT
Found at i:112572202 original size:23 final size:22
Alignment explanation
Indices: 112572142--112572206 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
112572132 AAAACACACG
* *
112572142 ATAC-ACACACGAGGTGCCTG-
1 ATACGACACACAAAGTGCCTGA
* *
112572162 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTG-A
*
112572185 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
112572207 TCGATAAAGC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
20 4 0.10
21 16 0.41
22 1 0.03
23 18 0.46
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTGA
Found at i:112572616 original size:15 final size:14
Alignment explanation
Indices: 112572576--112572631 Score: 85
Period size: 14 Copynumber: 3.9 Consensus size: 14
112572566 CATATATATT
112572576 ATATAATTCAATCA
1 ATATAATTCAATCA
112572590 ATATAATTCAATCA
1 ATATAATTCAATCA
*
112572604 AAATAATTTCAATCA
1 ATATAA-TTCAATCA
112572619 ATATAAATTCAAT
1 ATAT-AATTCAAT
112572632 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 19 0.50
15 17 0.45
16 2 0.05
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATAATTCAATCA
Found at i:112573906 original size:5 final size:5
Alignment explanation
Indices: 112573896--112573927 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
112573886 TTCTTTAGTT
112573896 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
112573928 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:112573962 original size:8 final size:8
Alignment explanation
Indices: 112573949--112573977 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
112573939 ATATTTTATT
112573949 ATATAATA
1 ATATAATA
112573957 ATATAATA
1 ATATAATA
112573965 ATATAATA
1 ATATAATA
112573973 ATATA
1 ATATA
112573978 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:112575386 original size:23 final size:23
Alignment explanation
Indices: 112575353--112575396 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
112575343 TGTTCTTTCT
* *
112575353 TTTTTTTTTTTACTTTTTTTAAG
1 TTTTTTATTTTACTTTATTTAAG
*
112575376 TTTTTTATTTTTCTTTATTTA
1 TTTTTTATTTTACTTTATTTA
112575397 TTTTATTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTTTATTTTACTTTATTTAAG
Found at i:112575458 original size:23 final size:21
Alignment explanation
Indices: 112575427--112575483 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
112575417 AAAAAACTTG
* *
112575427 AAATGTATATTTGAAATGTTTT
1 AAATATATATTTGAAA-ATTTT
*
112575449 ATAATATATATTTTTAAAATTTT
1 A-AATATATA-TTTGAAAATTTT
112575472 AAATATATATTT
1 AAATATATATTT
112575484 TTGAAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 9 0.30
23 12 0.40
24 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AAATATATATTTGAAAATTTT
Found at i:112575479 original size:22 final size:23
Alignment explanation
Indices: 112575445--112575491 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
112575435 ATTTGAAATG
112575445 TTTTATAATATATATTTTTAAAA
1 TTTTATAATATATATTTTTAAAA
*
112575468 TTTTA-AATATATATTTTTGAAA
1 TTTTATAATATATATTTTTAAAA
112575490 TT
1 TT
112575492 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTATAATATATATTTTTAAAA
Found at i:112575502 original size:35 final size:34
Alignment explanation
Indices: 112575459--112575524 Score: 114
Period size: 35 Copynumber: 1.9 Consensus size: 34
112575449 ATAATATATA
112575459 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
1 TTTTTAAAATTTTAAATAT-TATTTTTGAAATTAT
*
112575494 TTTTTAAAATTTTAAATATTATTTTTTAAAT
1 TTTTTAAAATTTTAAATATTATTTTTGAAAT
112575525 ATTAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 11 0.37
35 19 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (34 bp):
TTTTTAAAATTTTAAATATTATTTTTGAAATTAT
Found at i:112575505 original size:22 final size:22
Alignment explanation
Indices: 112575489--112575542 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
112575479 TATTTTTGAA
112575489 ATTATTTTTTAAAATTTTAAAT
1 ATTATTTTTTAAAATTTTAAAT
*
112575511 ATTATTTTTT-AAATATTAAAT
1 ATTATTTTTTAAAATTTTAAAT
112575532 A-TATTTTTTAA
1 ATTATTTTTTAA
112575543 TAATATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 8 0.27
21 12 0.40
22 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTATTTTTTAAAATTTTAAAT
Found at i:112575540 original size:20 final size:20
Alignment explanation
Indices: 112575487--112575542 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
112575477 TATATTTTTG
*
112575487 AAAT-TATTTTTTAAAATTTT
1 AAATATATTTTTT-AAATATT
112575507 AAATATTATTTTTTAAATATT
1 AAATA-TATTTTTTAAATATT
112575528 AAATATATTTTTTAA
1 AAATATATTTTTTAA
112575543 TAATATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 14 0.42
21 11 0.33
22 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
AAATATATTTTTTAAATATT
Found at i:112575547 original size:22 final size:21
Alignment explanation
Indices: 112575487--112575548 Score: 83
Period size: 22 Copynumber: 3.0 Consensus size: 21
112575477 TATATTTTTG
*
112575487 AAAT-TATTTTTTAAAATTTT
1 AAATATATTTTTTAAAATATT
112575507 AAATATTATTTTTT-AAATATT
1 AAATA-TATTTTTTAAAATATT
112575528 AAATATATTTTTTAATAATAT
1 AAATATATTTTTTAA-AATAT
112575549 AAAACATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 12 0.32
21 12 0.32
22 13 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATATATTTTTTAAAATATT
Found at i:112575551 original size:21 final size:20
Alignment explanation
Indices: 112575487--112575551 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 20
112575477 TATATTTTTG
*
112575487 AAAT-TATTTTTTAAAATTTT
1 AAATATATTTTTTAAAA-TAT
112575507 AAATATTATTTTTT-AAATATT
1 AAATA-TATTTTTTAAAATA-T
112575528 AAATATATTTTTTAATAATAT
1 AAATATATTTTTTAA-AATAT
112575549 AAA
1 AAA
112575552 ACATTTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
20 13 0.33
21 14 0.36
22 12 0.31
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AAATATATTTTTTAAAATAT
Found at i:112575611 original size:28 final size:27
Alignment explanation
Indices: 112575579--112575682 Score: 86
Period size: 29 Copynumber: 3.7 Consensus size: 27
112575569 AGATATGACC
*
112575579 TTTTAAATTTATTATT-AGTTTTATAATA
1 TTTTAAATTTATT-TTAAATTTTA-AATA
112575607 TTTTAAATGTATATTTTAAATTTTAAATA
1 TTTTAAAT-T-TATTTTAAATTTTAAATA
* * *
112575636 TTTTTAATTTGTTTTATAATTTTTAAATGT
1 TTTTAAATTTATTTTA-AA-TTTTAAAT-A
*
112575666 TTTTTAATTT-TTTTAAA
1 TTTTAAATTTATTTTAAA
112575683 ATATATTATT
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
27 6 0.09
28 13 0.20
29 27 0.41
30 20 0.30
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTTAAATTTATTTTAAATTTTAAATA
Found at i:112575636 original size:16 final size:16
Alignment explanation
Indices: 112575597--112575645 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
112575587 TTATTATTAG
112575597 TTTTATAATATTTTAAA
1 TTTTA-AATATTTTAAA
*
112575614 -TGT--ATATTTTAAA
1 TTTTAAATATTTTAAA
*
112575627 TTTTAAATATTTTTAA
1 TTTTAAATATTTTAAA
112575643 TTT
1 TTT
112575646 GTTTTATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
13 10 0.38
14 2 0.08
16 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTTAAATATTTTAAA
Found at i:112575666 original size:18 final size:18
Alignment explanation
Indices: 112575596--112575677 Score: 61
Period size: 18 Copynumber: 4.8 Consensus size: 18
112575586 TTTATTATTA
112575596 GTTTTATAATATTTTAAAT
1 GTTTTATAAT-TTTTAAAT
112575615 G---TAT-A-TTTTAAA-
1 GTTTTATAATTTTTAAAT
* *
112575627 -TTTTAAATATTTTTAATTT
1 GTTTTATA-ATTTTTAA-AT
112575646 GTTTTATAATTTTTAAAT
1 GTTTTATAATTTTTAAAT
*
112575664 GTTTTTTAATTTTT
1 GTTTTATAATTTTT
112575678 TTAAAATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 19
0.67 0.07 0.26
Matches are distributed among these distances:
13 7 0.14
14 2 0.04
15 1 0.02
16 4 0.08
17 6 0.12
18 14 0.29
19 9 0.18
20 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (18 bp):
GTTTTATAATTTTTAAAT
Found at i:112577725 original size:30 final size:30
Alignment explanation
Indices: 112577691--112577757 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
112577681 TGTTCCAGTA
*
112577691 ATATGAACTCGAACCGGC-CATGTCTGAATG
1 ATATGAACTCGAACC-GCTAATGTCTGAATG
* *
112577721 ATATGAACTTGAACCGCTAATGTCTGAGTG
1 ATATGAACTCGAACCGCTAATGTCTGAATG
112577751 ATATGAA
1 ATATGAA
112577758 TTGCTTTGCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (30 bp):
ATATGAACTCGAACCGCTAATGTCTGAATG
Found at i:112580012 original size:17 final size:17
Alignment explanation
Indices: 112579975--112580039 Score: 67
Period size: 17 Copynumber: 3.7 Consensus size: 17
112579965 CAACATTTTC
* *
112579975 TTTTAACATATTTAAAC
1 TTTTAATATATTTAAAT
112579992 TTTTAATATATTTAAATTT
1 TTTTAATATATTTAAA--T
* *
112580011 TTTTAATTTTTTTAAAT
1 TTTTAATATATTTAAAT
*
112580028 TTTAAATATATT
1 TTTTAATATATT
112580040 AAAAAATTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
17 25 0.64
19 14 0.36
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAATATATTTAAAT
Found at i:112580158 original size:19 final size:19
Alignment explanation
Indices: 112580131--112580272 Score: 56
Period size: 18 Copynumber: 7.8 Consensus size: 19
112580121 TAAAATTGGT
* *
112580131 TATACTTAAATTTTTTTAA
1 TATATTTAAATTTTTTAAA
112580150 TATATTT-AATTTTTTAAA
1 TATATTTAAATTTTTTAAA
* * *
112580168 AATATATTAAATATATTAAA
1 TATAT-TTAAATTTTTTAAA
** *
112580188 -AT-TTTAAAATTGGTT--G
1 TATATTT-AAATTTTTTAAA
*
112580204 T-T-GTTAACATTTTTT-AA
1 TATATTTAA-ATTTTTTAAA
112580221 TATATTT-AATTTTTTAAA
1 TATATTTAAATTTTTTAAA
* *
112580239 GT-TTTTTAAA-ATTTTAAA
1 -TATATTTAAATTTTTTAAA
112580257 TATA-TTAAGATTTTTT
1 TATATTTAA-ATTTTTT
112580273 TTTTGTCTTT
Statistics
Matches: 91, Mismatches: 18, Indels: 28
0.66 0.13 0.20
Matches are distributed among these distances:
15 2 0.02
16 8 0.09
17 15 0.16
18 38 0.42
19 19 0.21
20 9 0.10
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (19 bp):
TATATTTAAATTTTTTAAA
Found at i:112580173 original size:71 final size:71
Alignment explanation
Indices: 112580089--112580238 Score: 248
Period size: 71 Copynumber: 2.1 Consensus size: 71
112580079 TTAAAATATA
*
112580089 TTTTTAAAAATATATTGAATATATTAAAATTTTAAAATTGGTTATACTTAA-ATTTTTTTAATAT
1 TTTTTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACA-TTTTTTAATAT
112580153 ATTTAAT
65 ATTTAAT
* **
112580160 TTTTTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTGTTGTTAACATTTTTTAATATA
1 TTTTTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATA
112580225 TTTAAT
66 TTTAAT
112580231 TTTTTAAA
1 TTTTTAAA
112580239 GTTTTTTAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
71 73 0.99
72 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (71 bp):
TTTTTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATA
TTTAAT
Found at i:112580186 original size:20 final size:20
Alignment explanation
Indices: 112580148--112580188 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
112580138 AAATTTTTTT
* * *
112580148 AATATATTTAATTTTTTAAA
1 AATATATTAAATATATTAAA
112580168 AATATATTAAATATATTAAA
1 AATATATTAAATATATTAAA
112580188 A
1 A
112580189 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATATTAAATATATTAAA
Found at i:112580347 original size:18 final size:17
Alignment explanation
Indices: 112580301--112580339 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
112580291 AAAATATATA
* *
112580301 TTAAGTATATTAAAATT
1 TTAAATATATTAAACTT
112580318 TTAAATATATTAAACTT
1 TTAAATATATTAAACTT
112580335 TTAAA
1 TTAAA
112580340 ATTAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAACTT
Found at i:112580369 original size:42 final size:41
Alignment explanation
Indices: 112580300--112580380 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 41
112580290 AAAAATATAT
*
112580300 ATTAAGTATATTAAAATTTTAAATATA-TTAAACTTTTAAA
1 ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
* * *
112580340 ATTAATTATACTTAACATTTTTTAATATATTTAAAATTTTA
1 ATTAAGTATA-TTAA-AATTTTAAATATATTTAAAATTTTA
112580381 GAAAACTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 9 0.26
41 4 0.12
42 11 0.32
43 10 0.29
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (41 bp):
ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
Found at i:112580373 original size:19 final size:20
Alignment explanation
Indices: 112580341--112580379 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
112580331 ACTTTTAAAA
*
112580341 TTAATTATACTTAACATTTT
1 TTAATTATACTTAAAATTTT
*
112580361 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
112580380 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATTATACTTAAAATTTT
Found at i:112581370 original size:20 final size:20
Alignment explanation
Indices: 112581345--112581382 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
112581335 ATTTTTAATT
*
112581345 TTTTTAATTTAAATTTTTAC
1 TTTTTAATATAAATTTTTAC
*
112581365 TTTTTAATATATATTTTT
1 TTTTTAATATAAATTTTT
112581383 TAAATAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTAATATAAATTTTTAC
Found at i:112581588 original size:16 final size:16
Alignment explanation
Indices: 112581563--112581613 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
112581553 ATTATAAAAC
*
112581563 AAATTAAAAATATTTA
1 AAATTTAAAATATTTA
112581579 AAATTTAAAATA--T-
1 AAATTTAAAATATTTA
*
112581592 ACATTTAAAATATTATA
1 AAATTTAAAATATT-TA
112581609 AAATT
1 AAATT
112581614 AATAATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.39
14 1 0.04
16 12 0.43
17 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATTTAAAATATTTA
Found at i:112581615 original size:16 final size:16
Alignment explanation
Indices: 112581563--112581620 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
112581553 ATTATAAAAC
112581563 AAATTAAAAATATT-TA
1 AAATT-AAAATATTATA
*
112581579 AAATTTAAA-A-TATA
1 AAATTAAAATATTATA
* *
112581593 CATTTAAAATATTATA
1 AAATTAAAATATTATA
112581609 AAATTAATAATA
1 AAATTAA-AATA
112581621 AATTTAAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
13 1 0.03
14 9 0.28
15 4 0.12
16 14 0.44
17 4 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAAAATATTATA
Found at i:112581615 original size:29 final size:28
Alignment explanation
Indices: 112581550--112581629 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 28
112581540 CATAATTTAA
* *
112581550 AAAATTATAA-AACAAATTAAAAATATTT
1 AAAATT-TAATAATAAATTTAAAATATTT
112581578 AAAATTTAA-AATATACATTTAAAATATTAT
1 AAAATTTAATAATA-A-ATTTAAAATATT-T
112581608 AAAA-TTAATAATAAATTTAAAA
1 AAAATTTAATAATAAATTTAAAA
112581630 GGTCATATCT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.13
28 15 0.33
29 16 0.35
30 9 0.20
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (28 bp):
AAAATTTAATAATAAATTTAAAATATTT
Found at i:112581748 original size:23 final size:22
Alignment explanation
Indices: 112581694--112581751 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
112581684 TTTAAAAAAT
*
112581694 AATTTCAAATATATATATTTAA
1 AATTTCAAATATATATATTAAA
* *
112581716 AATTTAAAATATATGT-TATAAA
1 AATTTCAAATATATATAT-TAAA
112581738 ACATTTCAAATATA
1 A-ATTTCAAATATA
112581752 CATTTCAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 18 0.60
23 11 0.37
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (22 bp):
AATTTCAAATATATATATTAAA
Found at i:112581856 original size:7 final size:7
Alignment explanation
Indices: 112581819--112581848 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
112581809 AAAAACGTTA
112581819 AAAAAAG
1 AAAAAAG
112581826 -AAAAAG
1 AAAAAAG
112581832 AAAAAAG
1 AAAAAAG
112581839 AAAAAAG
1 AAAAAAG
112581846 AAA
1 AAA
112581849 GAACAAAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:112582497 original size:17 final size:17
Alignment explanation
Indices: 112582468--112582514 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
112582458 CGTATAATAT
112582468 CAAAAAAAT--TAAAAC
1 CAAAAAAATCATAAAAC
**
112582483 TTAAAAAATCATAAAAAC
1 CAAAAAAATCAT-AAAAC
112582501 CAAAAAAATCATAA
1 CAAAAAAATCATAA
112582515 TCTATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 7 0.28
17 3 0.12
18 15 0.60
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (17 bp):
CAAAAAAATCATAAAAC
Found at i:112585269 original size:27 final size:27
Alignment explanation
Indices: 112585212--112585270 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
112585202 TGCCATATCA
* * *
112585212 ATAGGCGACACTAGTGACCCTTACTTG
1 ATAGGCGACACCAATGACCCCTACTTG
112585239 ATAGGCGACACCAATGACCCCTATCTT-
1 ATAGGCGACACCAATGACCCCTA-CTTG
112585266 ATAGG
1 ATAGG
112585271 TGGCACTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (27 bp):
ATAGGCGACACCAATGACCCCTACTTG
Found at i:112590610 original size:23 final size:25
Alignment explanation
Indices: 112590562--112590610 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
112590552 AGTGGATTGA
*
112590562 AAAATGAAATGTGAAATATGTTGTG
1 AAAATGAAATGTGAAATATGTAGTG
112590587 AAAAT-AAATG-GAAAATATG-AGTG
1 AAAATGAAATGTG-AAATATGTAGTG
112590610 A
1 A
112590611 TGCAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 5 0.23
24 12 0.55
25 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAATGAAATGTGAAATATGTAGTG
Found at i:112594476 original size:2 final size:2
Alignment explanation
Indices: 112594469--112594509 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
112594459 AATTAAATTA
112594469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
112594510 ACACTAAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:112594964 original size:12 final size:12
Alignment explanation
Indices: 112594947--112594984 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
112594937 CGGCCTGCCC
112594947 ATATTAATTTTT
1 ATATTAATTTTT
112594959 ATATT-ATTTTT
1 ATATTAATTTTT
*
112594970 ATA-TAATTTTA
1 ATATTAATTTTT
112594981 ATAT
1 ATAT
112594985 ATATATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 1 0.04
11 17 0.74
12 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:112595634 original size:18 final size:18
Alignment explanation
Indices: 112595601--112595635 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
112595591 TATTGAAAAT
112595601 TATAAATTAAACTATAAG
1 TATAAATTAAACTATAAG
112595619 TATATAATTAAA-TATAA
1 TATA-AATTAAACTATAA
112595636 AAAGTAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
TATAAATTAAACTATAAG
Found at i:112596433 original size:10 final size:10
Alignment explanation
Indices: 112596409--112596473 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
112596399 AAAATCAGAT
*
112596409 AAATGAAAAA
1 AAATTAAAAA
112596419 TAAATTAAAAA
1 -AAATTAAAAA
*
112596430 AAATT-ATAA
1 AAATTAAAAA
* *
112596439 AAATTCATAA
1 AAATTAAAAA
*
112596449 AAATTTAAAA
1 AAATTAAAAA
*
112596459 ATATTAAAATA
1 AAATTAAAA-A
112596470 AAAT
1 AAAT
112596474 ACACGTGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
9 8 0.18
10 24 0.53
11 13 0.29
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
AAATTAAAAA
Found at i:112598680 original size:16 final size:17
Alignment explanation
Indices: 112598659--112598690 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
112598649 CTCTTTGGGC
112598659 AATAAATAA-TAATATA
1 AATAAATAATTAATATA
112598675 AATAAATAATTAATAT
1 AATAAATAATTAATAT
112598691 TTATAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAAATAATTAATATA
Found at i:112599192 original size:67 final size:68
Alignment explanation
Indices: 112599071--112599207 Score: 222
Period size: 67 Copynumber: 2.0 Consensus size: 68
112599061 GGAAAAGAGA
* * *
112599071 ATTTTAGGAATTGGGAATGTCTGTTTTTTTTTTTAGGATTGTGTGAGCTTAATCTAGTTTCGGTT
1 ATTTTAGGAATTGGGAATATATG--TTTTTTTTTAGAATTGTGTGAGCTTAATCTAGTTTCGGTT
112599136 TCATT
64 TCATT
112599141 ATTTTAGGAATTGGGAATATATG-TTTTTTTTAGAATTGTGTGAGCTTAATCTAGTTTCGGTTTC
1 ATTTTAGGAATTGGGAATATATGTTTTTTTTTAGAATTGTGTGAGCTTAATCTAGTTTCGGTTTC
112599205 ATT
66 ATT
112599208 TGTGTTCTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
67 43 0.67
70 21 0.33
ACGTcount: A:0.21, C:0.07, G:0.22, T:0.50
Consensus pattern (68 bp):
ATTTTAGGAATTGGGAATATATGTTTTTTTTTAGAATTGTGTGAGCTTAATCTAGTTTCGGTTTC
ATT
Found at i:112612505 original size:43 final size:43
Alignment explanation
Indices: 112612444--112612530 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
112612434 CTATATTGAC
112612444 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
1 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
112612487 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
1 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
112612530 T
1 T
112612531 CTCTTATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (43 bp):
TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
Found at i:112613656 original size:7 final size:7
Alignment explanation
Indices: 112613644--112613677 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
112613634 TTGCTTAAGT
112613644 AAATTAA
1 AAATTAA
112613651 AAATTAA
1 AAATTAA
112613658 AAATTAA
1 AAATTAA
112613665 AAATTAA
1 AAATTAA
112613672 AAATTA
1 AAATTA
112613678 TATAATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATTAA
Found at i:112614202 original size:2 final size:2
Alignment explanation
Indices: 112614197--112614226 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
112614187 TTAAAAAATA
112614197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112614227 GGTTATTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:112617507 original size:3 final size:3
Alignment explanation
Indices: 112617501--112617540 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
112617491 TTGGGTTAGG
* *
112617501 GAA GAA GAA GAA GAG GAG GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
112617541 GGGAAAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:112617893 original size:25 final size:25
Alignment explanation
Indices: 112617859--112617909 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
112617849 TTCCTTATAA
**
112617859 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
112617884 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
112617909 A
1 A
112617910 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:112617908 original size:12 final size:12
Alignment explanation
Indices: 112617862--112617909 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
112617852 CTTATAAACT
112617862 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
112617874 TTCTATTAGGACT
1 TTAAATTAGGA-A
112617887 TTAAATTAGGAA
1 TTAAATTAGGAA
*
112617899 TTAGATTAGGA
1 TTAAATTAGGA
112617910 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:112622564 original size:25 final size:25
Alignment explanation
Indices: 112622530--112622580 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
112622520 TTCCTTATAA
**
112622530 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
112622555 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
112622580 A
1 A
112622581 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:112622579 original size:12 final size:12
Alignment explanation
Indices: 112622533--112622580 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
112622523 CTTATAAACT
112622533 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
112622545 TTCTATTAGGACT
1 TTAAATTAGGA-A
112622558 TTAAATTAGGAA
1 TTAAATTAGGAA
*
112622570 TTAGATTAGGA
1 TTAAATTAGGA
112622581 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:112627149 original size:50 final size:50
Alignment explanation
Indices: 112627054--112627149 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
112627044 ACCTTATTCT
* * * *
112627054 AATCAATGTCAAATAGAAGGATAGAAGTACTATACGGATTCTACTTATAC
1 AATCAATATCAAATAGAAGAAGAGAAGTACTATACAGATTCTACTTATAC
* * * *
112627104 AATCAATATCAAATAGAAGAAGAGTAGTTCTATACATATTTTACTT
1 AATCAATATCAAATAGAAGAAGAGAAGTACTATACAGATTCTACTT
112627150 GTATTTTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (50 bp):
AATCAATATCAAATAGAAGAAGAGAAGTACTATACAGATTCTACTTATAC
Found at i:112631318 original size:33 final size:33
Alignment explanation
Indices: 112631281--112631347 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
112631271 TCACAAGATA
* * *
112631281 AATCATTTTGCATCATTTCGTGTCACTTAACTT
1 AATCATTTTGCATCAATTCATGTCACTAAACTT
112631314 AATCATTTTGCATCAATTCATGTCACTAAACTT
1 AATCATTTTGCATCAATTCATGTCACTAAACTT
112631347 A
1 A
112631348 CTTACCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (33 bp):
AATCATTTTGCATCAATTCATGTCACTAAACTT
Found at i:112631834 original size:18 final size:18
Alignment explanation
Indices: 112631811--112631849 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
112631801 TTTAATAGAG
112631811 AATTTAACTTACCAATTT
1 AATTTAACTTACCAATTT
112631829 AATTTAACTTACCAATTT
1 AATTTAACTTACCAATTT
112631847 AAT
1 AAT
112631850 CACATTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTTAACTTACCAATTT
Found at i:112632250 original size:25 final size:25
Alignment explanation
Indices: 112632220--112632285 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
112632210 ATTTAAACAG
* *
112632220 TAAGCTCCTTCGAGCTGAATAACGA
1 TAAGCTCATACGAGCTGAATAACGA
* * *
112632245 TAAGCTCATACGAGCTGAGTATCGG
1 TAAGCTCATACGAGCTGAATAACGA
*
112632270 TAAGCTCATAAGAGCT
1 TAAGCTCATACGAGCT
112632286 AAAATCAGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (25 bp):
TAAGCTCATACGAGCTGAATAACGA
Found at i:112635759 original size:47 final size:47
Alignment explanation
Indices: 112635706--112635805 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
112635696 AGACAAGGAT
* * * *
112635706 ACCATGTTTGGAACATGGCATTTGGTAAGGCGATGATACCATGTAAG
1 ACCATGTTTGAAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
* * *
112635753 ACCATGTTTGAAACATGTCATTTGGTAAGATAAGGATATCATGTAAG
1 ACCATGTTTGAAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
112635800 ACCATG
1 ACCATG
112635806 CCAAGGCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (47 bp):
ACCATGTTTGAAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
Found at i:112635848 original size:54 final size:54
Alignment explanation
Indices: 112635784--112635991 Score: 226
Period size: 55 Copynumber: 3.9 Consensus size: 54
112635774 TTGGTAAGAT
*
112635784 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
112635838 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
112635893 AA--ATGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAA-TTC-ATAAGGT
1 AAGGATAT--CATGTAAGACCATGCCAAGACATGGCATTGAT-AAGTTCTATAAGGC
* * * * * *
112635946 AAGGATACCACGTAAGACCATGTCAAGAAATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
112635992 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
52 2 0.02
53 40 0.31
54 42 0.33
55 43 0.33
56 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:112636275 original size:15 final size:15
Alignment explanation
Indices: 112636255--112636284 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
112636245 GCTATTAAGT
112636255 AAGGTTCCTTTTGTA
1 AAGGTTCCTTTTGTA
112636270 AAGGTTCCTTTTGTA
1 AAGGTTCCTTTTGTA
112636285 TTCTGAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (15 bp):
AAGGTTCCTTTTGTA
Found at i:112642941 original size:16 final size:16
Alignment explanation
Indices: 112642920--112642950 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
112642910 TTCACTATTA
*
112642920 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
112642936 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
112642951 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:112644472 original size:14 final size:14
Alignment explanation
Indices: 112644455--112644487 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
112644445 GGTCGGCTGC
112644455 GGTTGGTCATCAGT
1 GGTTGGTCATCAGT
*
112644469 GGTTGGTCATCGGT
1 GGTTGGTCATCAGT
112644483 GGTTG
1 GGTTG
112644488 AGTTGTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.12, G:0.42, T:0.36
Consensus pattern (14 bp):
GGTTGGTCATCAGT
Found at i:112651325 original size:42 final size:42
Alignment explanation
Indices: 112651212--112651371 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
112651202 TCAAAAGCTC
* * *
112651212 GTACAATGCCAACGTCCCAGACGTGGTCTTA-TATGTAATTAA
1 GTACGATGCCAACGTCCCAGACGTGGTCTTACT-TGAAATCAA
* * * *
112651254 ATATCGATGTC-ACTATCCCAAACAG-GGTCTTACTTGAAATCAA
1 GTA-CGATGCCAAC-GTCCCAGAC-GTGGTCTTACTTGAAATCAA
*
112651297 GTACGATGCCAACGTCCCAGACGTGGTCTTACATGAAAATCATAA
1 GTACGATGCCAACGTCCCAGACGTGGTCTTACTTG-AAATC--AA
* *
112651342 GT-CGAT-CCAATGTACCAGACGTGGTCTTAC
1 GTACGATGCCAACGTCCCAGACGTGGTCTTAC
112651372 ATGATAACAC
Statistics
Matches: 95, Mismatches: 14, Indels: 17
0.75 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 57 0.60
44 6 0.06
45 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GTACGATGCCAACGTCCCAGACGTGGTCTTACTTGAAATCAA
Found at i:112655531 original size:8 final size:8
Alignment explanation
Indices: 112655518--112655542 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
112655508 GACCTATACT
112655518 AATGTTAC
1 AATGTTAC
112655526 AATGTTAC
1 AATGTTAC
112655534 AATGTTAC
1 AATGTTAC
112655542 A
1 A
112655543 CCTATGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (8 bp):
AATGTTAC
Found at i:112661603 original size:13 final size:13
Alignment explanation
Indices: 112661585--112661610 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112661575 GGGATTTGTT
112661585 TTAACTAAACTAA
1 TTAACTAAACTAA
112661598 TTAACTAAACTAA
1 TTAACTAAACTAA
112661611 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:112662434 original size:13 final size:13
Alignment explanation
Indices: 112662416--112662442 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
112662406 GCTCCACAGG
112662416 GACACGCCCGTGT
1 GACACGCCCGTGT
112662429 GACACGCCCGTGT
1 GACACGCCCGTGT
112662442 G
1 G
112662443 CAAGTGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:112666075 original size:27 final size:27
Alignment explanation
Indices: 112666033--112666165 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
112666023 GTCACTAGAT
112666033 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
112666059 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
112666086 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
*
112666113 ATAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
112666140 TCAGATA-ATTGTGTCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
112666166 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
26 11 0.12
27 81 0.86
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:112666109 original size:54 final size:54
Alignment explanation
Indices: 112666029--112666165 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 54
112666019 CGAAGTCACT
*
112666029 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
* *
112666083 AGATCAGATAATCGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
112666137 AGATCAGATAATTGTGTCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
112666166 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:112666333 original size:28 final size:26
Alignment explanation
Indices: 112666269--112666344 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
112666259 CAAAATTAAC
** *
112666269 CATAGGGGTATAACGGTAATTTTGCA
1 CATAGGGGTATAATAGTAATTTTCCA
*
112666295 CCTAGGGGTATAATAGTAATTTTCCATA
1 CATAGGGGTATAATAGTAATTTTCC--A
*
112666323 CATAGGGGTATTATAGTAATTT
1 CATAGGGGTATAATAGTAATTT
112666345 AACTGCTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.50
28 21 0.50
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.36
Consensus pattern (26 bp):
CATAGGGGTATAATAGTAATTTTCCA
Found at i:112667827 original size:10 final size:10
Alignment explanation
Indices: 112667812--112667853 Score: 84
Period size: 10 Copynumber: 4.2 Consensus size: 10
112667802 CCTAACCCAT
112667812 TATCAATTTG
1 TATCAATTTG
112667822 TATCAATTTG
1 TATCAATTTG
112667832 TATCAATTTG
1 TATCAATTTG
112667842 TATCAATTTG
1 TATCAATTTG
112667852 TA
1 TA
112667854 CCATAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (10 bp):
TATCAATTTG
Found at i:112673285 original size:2 final size:2
Alignment explanation
Indices: 112673278--112673309 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
112673268 ATCGGGTATG
112673278 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112673310 GTATGCCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:112673789 original size:24 final size:24
Alignment explanation
Indices: 112673757--112673939 Score: 285
Period size: 24 Copynumber: 7.6 Consensus size: 24
112673747 TATCTCAAAT
*
112673757 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
112673781 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
112673805 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
112673829 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
112673853 GCACTAAGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
112673877 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
112673901 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
112673925 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
112673940 ACATAATAAG
Statistics
Matches: 152, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 152 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:112673952 original size:48 final size:48
Alignment explanation
Indices: 112673757--112673961 Score: 225
Period size: 48 Copynumber: 4.3 Consensus size: 48
112673747 TATCTCAAAT
* * * *
112673757 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTCACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACAT-AATATA
** * *
112673805 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
* * ** *
112673853 GCACTAAGTGTGCGATTTACTATGGCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
* * * *
112673901 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
112673949 GCACTATGTGTGC
1 GCACTATGTGTGC
112673962 CACATTCGGT
Statistics
Matches: 142, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 135 0.95
49 7 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:112673953 original size:72 final size:72
Alignment explanation
Indices: 112673757--112673961 Score: 245
Period size: 72 Copynumber: 2.8 Consensus size: 72
112673747 TATCTCAAAT
* *
112673757 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGCGA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAGGCACTATGTGTGCGA
*
112673820 TTTACTATG
64 TTTACTATA
* ** * *
112673829 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCG-ATTTACTATGGCACTAAGTGTGCGAT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-GGCACTATGTGTGCGAT
112673893 TTACTATA
65 TTACTATA
* * * * *
112673901 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGC
112673962 CACATTCGGT
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
69 1 0.01
70 1 0.01
72 104 0.94
73 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGCGATT
TACTATA
Found at i:112684215 original size:24 final size:24
Alignment explanation
Indices: 112684181--112684362 Score: 276
Period size: 24 Copynumber: 7.6 Consensus size: 24
112684171 TATCTCAAAT
*
112684181 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
112684205 GCACTAAGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
112684229 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
112684253 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
112684277 GCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
112684300 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
112684324 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
112684348 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
112684363 ACATAATAAG
Statistics
Matches: 148, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
23 22 0.15
24 126 0.85
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:112684322 original size:95 final size:96
Alignment explanation
Indices: 112684181--112684362 Score: 303
Period size: 95 Copynumber: 1.9 Consensus size: 96
112684171 TATCTCAAAT
* *
112684181 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
*
112684246 TACTATGGCACTATGTGTGCGATTTACTATG
66 TACTATAGCACTATGTGTGCGATTTACTATG
*
112684277 GCACTATGTGTGCGATT-ACTATGGCACTAAGTGTGCGATTTACTATAGCACTACGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
* *
112684341 TGCTATAGCTCTATGTGTGCGA
66 TACTATAGCACTATGTGTGCGA
112684363 ACATAATAAG
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 63 0.79
96 17 0.21
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (96 bp):
GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
TACTATAGCACTATGTGTGCGATTTACTATG
Found at i:112684376 original size:95 final size:96
Alignment explanation
Indices: 112684181--112684384 Score: 295
Period size: 95 Copynumber: 2.1 Consensus size: 96
112684171 TATCTCAAAT
* *
112684181 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
* ** * *
112684246 TACTATGGCACTATGTGTGCGATTTACTATG
66 TACTATAGCACTATGTGTGCGACATAATATA
*
112684277 GCACTATGTGTGCGATT-ACTATGGCACTAAGTGTGCGATTTACTATAGCACTACGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
* *
112684341 TGCTATAGCTCTATGTGTGCGAACATAATA-A
66 TACTATAGCACTATGTGTGCG-ACATAATATA
112684372 GCACTATGTGTGC
1 GCACTATGTGTGC
112684385 CACATTCGGT
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
95 75 0.77
96 22 0.23
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (96 bp):
GCACTATGTGTGCGATTCACTATGGCACTAAGTGTGCGATTCACTATAGCACTACGTGTGCGATT
TACTATAGCACTATGTGTGCGACATAATATA
Found at i:112689270 original size:22 final size:23
Alignment explanation
Indices: 112689216--112689267 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
112689206 TATAAAACCT
112689216 AATAAAAA-TA-AGCTTAAAGAAA
1 AATAAAAAGTAGA-CTTAAAGAAA
112689238 AATAAAAAGTAGACTTAAA-ACAA
1 AATAAAAAGTAGACTTAAAGA-AA
112689261 AATAAAA
1 AATAAAA
112689268 GTAACAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
23 17 0.63
24 1 0.04
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.17
Consensus pattern (23 bp):
AATAAAAAGTAGACTTAAAGAAA
Found at i:112692364 original size:18 final size:18
Alignment explanation
Indices: 112692341--112692377 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
112692331 GGTTAAAGTG
112692341 AATGGAAGCTATGCACCA
1 AATGGAAGCTATGCACCA
112692359 AATGGAAGCTATGCACCA
1 AATGGAAGCTATGCACCA
112692377 A
1 A
112692378 GTAGGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (18 bp):
AATGGAAGCTATGCACCA
Found at i:112694908 original size:26 final size:26
Alignment explanation
Indices: 112694877--112694984 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
112694867 TGAAATGCCC
112694877 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
112694903 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
112694929 ATCATGGAATATTTACATAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
112694955 ATCATGAAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
112694981 ATCA
1 ATCA
112694985 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
25 2 0.03
26 71 0.97
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:112694954 original size:52 final size:52
Alignment explanation
Indices: 112694877--112694984 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
112694867 TGAAATGCCC
* * *
112694877 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACATAAACCATTATCATGAAACATTTACCTAACACATT
* *
112694929 ATCATGGAATATTTACATAATCCATTATCATGAAACATTTACCTAACACATT
1 ATCATGGAACATTTACATAAACCATTATCATGAAACATTTACCTAACACATT
112694981 ATCA
1 ATCA
112694985 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACATAAACCATTATCATGAAACATTTACCTAACACATT
Found at i:112700407 original size:18 final size:19
Alignment explanation
Indices: 112700366--112700409 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
112700356 ATTTGAGTAC
112700366 TCCATTTCTCATTCCATTT
1 TCCATTTCTCATTCCATTT
**
112700385 T-CATTTCTC-TTTTATTT
1 TCCATTTCTCATTCCATTT
112700402 TCCATTTC
1 TCCATTTC
112700410 AGTATCAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 14 0.64
19 1 0.05
ACGTcount: A:0.14, C:0.27, G:0.00, T:0.59
Consensus pattern (19 bp):
TCCATTTCTCATTCCATTT
Found at i:112702901 original size:16 final size:16
Alignment explanation
Indices: 112702859--112702917 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
112702849 ATATTCATAT
*
112702859 TATTTT-TAATTTA-A
1 TATTTTATATTTTATA
*
112702873 TATTTAATGATTTTATA
1 TATTTTAT-ATTTTATA
*
112702890 TATTTTATATTTTTTA
1 TATTTTATATTTTATA
* *
112702906 AAATTTATATTT
1 TATTTTATATTT
112702918 AGTTATCTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 5 0.14
15 1 0.03
16 22 0.61
17 8 0.22
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
TATTTTATATTTTATA
Found at i:112703013 original size:17 final size:17
Alignment explanation
Indices: 112702988--112703022 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
112702978 TTTGTGTTAT
*
112702988 AAATTACATAATATAAA
1 AAATAACATAATATAAA
112703005 AAATAACATAATATAAA
1 AAATAACATAATATAAA
112703022 A
1 A
112703023 CATTACAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAACATAATATAAA
Found at i:112706628 original size:215 final size:214
Alignment explanation
Indices: 112706257--112706667 Score: 599
Period size: 215 Copynumber: 1.9 Consensus size: 214
112706247 ACGGAGCCCG
**
112706257 CTCAAATCGTCAGCCCCAAGAACAAAAAGGACTGCGTACTCCATAAACATCTGCCCAACAAGCCT
1 CTCAAATCGTCAGCCCCAAGAACAAAAAGGACCACGTACTCCATAAACATCTGCCCAACAAGCCT
*
112706322 GAAGTCTGCTGAGAATGTCAGTATTAGGTACAGAGAATGTCAGGGCTAGAGGTAATGGAGTCAAG
66 GAAGTCTGCTGAGAATGTCAGTATTAGGGACAGAGAATGTCAGGGCTAGAGGTAATGGAGTCAAG
* * * * *
112706387 AAAAAATAGTGGGGTCGTAGTAGTGGGGTCCTATCATGAGTTATAATAATATTTGTGACACACAT
131 AAAAAATAATGGGGTCCTACTAGTGGGGTCCTATCATGAGCTATAATAATATCTGTGACA-ACAT
112706452 GTCCAACAGGTATAGGTCCA
195 GTCCAACAGGTATAGGTCCA
* ** * * * *
112706472 CTCAAATCG-CTAGCCCCAAGAACAAAAAGGACCACGTGCTCTGTAGACATGTGTCCAACAGGCC
1 CTCAAATCGTC-AGCCCCAAGAACAAAAAGGACCACGTACTCCATAAACATCTGCCCAACAAGCC
* * * *
112706536 TGGAGTCTGTTGAGAATGTCAGTATTAGGGACAGAGAATGTTAGGGCTAGAGGTAGTGGAGTCAA
65 TGAAGTCTGCTGAGAATGTCAGTATTAGGGACAGAGAATGTCAGGGCTAGAGGTAATGGAGTCAA
* * *
112706601 GACAAAATAATGGGGTCCTACTAGTGGGGTCCTATTATGAGCTGTAATAATATCTGTGACAACAT
130 GAAAAAATAATGGGGTCCTACTAGTGGGGTCCTATCATGAGCTATAATAATATCTGTGACAACAT
112706666 GT
195 GT
112706668 ATAAATACCT
Statistics
Matches: 173, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
214 7 0.04
215 166 0.96
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (214 bp):
CTCAAATCGTCAGCCCCAAGAACAAAAAGGACCACGTACTCCATAAACATCTGCCCAACAAGCCT
GAAGTCTGCTGAGAATGTCAGTATTAGGGACAGAGAATGTCAGGGCTAGAGGTAATGGAGTCAAG
AAAAAATAATGGGGTCCTACTAGTGGGGTCCTATCATGAGCTATAATAATATCTGTGACAACATG
TCCAACAGGTATAGGTCCA
Found at i:112717237 original size:50 final size:50
Alignment explanation
Indices: 112717157--112717255 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
112717147 GCAATAGTGC
112717157 ATCCACATATATAGGTTTTTTTGTTCTTTTTTCTCTTTTCTCCCTTTGAA
1 ATCCACATATATAGGTTTTTTTGTTCTTTTTTCTCTTTTCTCCCTTTGAA
*
112717207 ATCCACATATATAGGTTTTTTTGTTTTTTTTTCTCTTTTCTCCCTTTGA
1 ATCCACATATATAGGTTTTTTTGTTCTTTTTTCTCTTTTCTCCCTTTGA
112717256 CTTACTATTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.15, C:0.19, G:0.08, T:0.58
Consensus pattern (50 bp):
ATCCACATATATAGGTTTTTTTGTTCTTTTTTCTCTTTTCTCCCTTTGAA
Found at i:112725678 original size:26 final size:22
Alignment explanation
Indices: 112725622--112725665 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
112725612 AAACGACGAA
*
112725622 AAAACGTGTCAAAAGACAGACG
1 AAAACATGTCAAAAGACAGACG
112725644 AAAACATGTCAAAAGACAGACG
1 AAAACATGTCAAAAGACAGACG
112725666 GATCATAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.20, T:0.09
Consensus pattern (22 bp):
AAAACATGTCAAAAGACAGACG
Found at i:112732078 original size:41 final size:40
Alignment explanation
Indices: 112731969--112732083 Score: 115
Period size: 41 Copynumber: 2.8 Consensus size: 40
112731959 CGCTAGTAAG
*
112731969 AAAACGCCGCAAAAGATTAGAGCTATAGCGGCGTTTATGACA
1 AAAACGCCGCAAAAGATTAGA-AT-TAGCGGCGTTTATGACA
* * * * *
112732011 AAAACGCTGCAAAAGGTCAAGCATTAGAGGCGTTTATGA-A
1 AAAACGCCGCAAAAGAT-TAGAATTAGCGGCGTTTATGACA
*
112732051 ACAAACGCCGCAATAGATTGAGAATTAGCGGCG
1 A-AAACGCCGCAAAAGATT-AGAATTAGCGGCG
112732084 CTTTTTAGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
40 2 0.03
41 38 0.66
42 16 0.28
43 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (40 bp):
AAAACGCCGCAAAAGATTAGAATTAGCGGCGTTTATGACA
Found at i:112732406 original size:7 final size:7
Alignment explanation
Indices: 112732390--112732427 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
112732380 TATTTTGTGA
112732390 TTAGAGT
1 TTAGAGT
*
112732397 TTAAAGT
1 TTAGAGT
*
112732404 TTAGGGT
1 TTAGAGT
112732411 TTAGAGT
1 TTAGAGT
112732418 TTAGAGT
1 TTAGAGT
112732425 TTA
1 TTA
112732428 TGGTTTATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (7 bp):
TTAGAGT
Found at i:112732441 original size:21 final size:21
Alignment explanation
Indices: 112732390--112732434 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
112732380 TATTTTGTGA
112732390 TTAGAGTTTAAAGTTTAGGGT
1 TTAGAGTTTAAAGTTTAGGGT
* *
112732411 TTAGAGTTTAGAGTTTATGGT
1 TTAGAGTTTAAAGTTTAGGGT
112732432 TTA
1 TTA
112732435 TGGTTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTAGGGT
Found at i:112732659 original size:21 final size:21
Alignment explanation
Indices: 112732633--112732679 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
112732623 TTAAGGTATA
*
112732633 GGTTTATGGTCTAAGATTTAG
1 GGTTTATGATCTAAGATTTAG
* * *
112732654 GGTTTATGATTTAGGATTTGG
1 GGTTTATGATCTAAGATTTAG
112732675 GGTTT
1 GGTTT
112732680 GGATTTGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (21 bp):
GGTTTATGATCTAAGATTTAG
Found at i:112732974 original size:28 final size:27
Alignment explanation
Indices: 112732935--112732994 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
112732925 ATAACATCAT
* *
112732935 TTTATATTTAGGGTTAAGGGTTTAGTG
1 TTTATATTTAGGGTTAAGAGTTTAGTA
*
112732962 TTTATAATTTAGGGTTTAGAGTTTAGTA
1 TTTAT-ATTTAGGGTTAAGAGTTTAGTA
112732990 TTTAT
1 TTTAT
112732995 GGGATAAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (27 bp):
TTTATATTTAGGGTTAAGAGTTTAGTA
Found at i:112733020 original size:7 final size:7
Alignment explanation
Indices: 112732941--112733023 Score: 51
Period size: 7 Copynumber: 11.7 Consensus size: 7
112732931 TCATTTTATA
112732941 TTTAGGG
1 TTTAGGG
*
112732948 TTAAGGG
1 TTTAGGG
*
112732955 TTTAGTG
1 TTTAGGG
***
112732962 TTTATAA
1 TTTAGGG
112732969 TTTAGGG
1 TTTAGGG
*
112732976 TTTAGAG
1 TTTAGGG
**
112732983 TTTAGTA
1 TTTAGGG
112732990 TTTATGGG
1 TTTA-GGG
* *
112732998 ATAAGGG
1 TTTAGGG
112733005 -TTAGAGG
1 TTTAG-GG
112733012 TTTAGGG
1 TTTAGGG
112733019 TTTAG
1 TTTAG
112733024 ATTAATTAGT
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
6 3 0.05
7 46 0.82
8 7 0.12
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:112733501 original size:82 final size:82
Alignment explanation
Indices: 112733415--112733590 Score: 280
Period size: 82 Copynumber: 2.1 Consensus size: 82
112733405 ATTAGCAGCT
* *
112733415 TTTTTAAAAAAACACCGCTAATCCTCTAAATCTCCAATTAAAGCGACGCCATTTTCGTTAAACTA
1 TTTTTAAAAAAACACCGCTAATCCGCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTA
* *
112733480 TTATATTTTTTTTTGCG
66 TTATATTTTTTGTGGCG
* *
112733497 TTTTTTAAAAAACGCCGCTAATCCGCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTA
1 TTTTTAAAAAAACACCGCTAATCCGCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTA
*
112733562 TTATGTTTTTTGTGGCG
66 TTATATTTTTTGTGGCG
112733579 TTTCTTAAAAAA
1 TTT-TTAAAAAA
112733591 TGCCACTAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 78 0.92
83 7 0.08
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (82 bp):
TTTTTAAAAAAACACCGCTAATCCGCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTA
TTATATTTTTTGTGGCG
Found at i:112734501 original size:22 final size:22
Alignment explanation
Indices: 112734474--112734516 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
112734464 GCGTTTTTTG
112734474 AAAAAAGGCCGTAAAAAAACAA
1 AAAAAAGGCCGTAAAAAAACAA
112734496 AAAAAAGGCCGTAAAAAAACA
1 AAAAAAGGCCGTAAAAAAACA
112734517 TAATTGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.67, C:0.14, G:0.14, T:0.05
Consensus pattern (22 bp):
AAAAAAGGCCGTAAAAAAACAA
Found at i:112735427 original size:70 final size:70
Alignment explanation
Indices: 112735314--112735453 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
112735304 CTCGTGCATC
* *
112735314 TAACATTATTATATAATAATATTAATAGATATGTTGTAGGGGGTGTAATCTAATTCTCATTGAAA
1 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCTAATCCTCATTGAAA
112735379 ACTAA
66 ACTAA
112735384 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCTAATCCTCATTGAAA
1 TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCTAATCCTCATTGAAA
112735449 ACTAA
66 ACTAA
112735454 CATCAAAAGA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (70 bp):
TAACATTATTATATAATAATATTAATAGATATGCTGTAGGGGGTGTAATCTAATCCTCATTGAAA
ACTAA
Found at i:112737895 original size:99 final size:98
Alignment explanation
Indices: 112737739--112738520 Score: 702
Period size: 99 Copynumber: 7.6 Consensus size: 98
112737729 TATTTTCAAT
* *
112737739 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTGTATTTAAAGTTT-ATTTTAAATATTTTATTTTATTTGAATCACG
112737804 AAAATTAATTTCAATATTTTATTTTATTTTAACA
65 AAAATTAATTTCAATATTTTATTTTATTTTAACA
*
112737838 TTACATAATTAAATTAAGTTGTATTTAAAGTGTTATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTGTATTTAAAGT-TTATTTTAAATATTTTATTTTATTTGAATCACG
*
112737903 AAAATTAATTTTAATATTTTATTTTATTTTAACA
65 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* *
112737937 TTACATAATTAAATTAAGTTGTATTTAAAATTTTATTTTAAATATTTTATTTTCTTTCACTTTAA
1 TTACATAATTAAATTAAATTGTATTT-AAAGTTTATTTTAAATATTTTA---T-TTT-A---T--
* * *** * *
112738002 TTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTTATTTTCAA-T
55 TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AACA
* *
112738047 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTTACTTTAA
1 TTACATAATTAAATTAAATTGTATTTAAAGTTT-ATTTT-AA-A---TATTTTATTTTA---T--
* *** * *
112738112 TTTAATCACGAAAA-T-ATTTTGTTTTCTTTAATTTTATTTTCAA-T
55 TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTATTTT-AACA
* *
112738156 TTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATTTGAATCACG
1 TTACATAATTAAATTAAATTGTATTTAAAGTTT-ATTTTAAATATTTTATTTTATTTGAATCACG
112738221 AAAATTAATTTCAATATTTTATTTTATTTTAACA
65 AAAATTAATTTCAATATTTTATTTTATTTTAACA
* *
112738255 TTACATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTATTTTA-TT---TCACT
1 TTACATAATTAAATTAAATTGTATTTAAAG-TTTATTTTAAATATTTTATTTTATTTGAATCAC-
** * ** * * **
112738316 TTAATTTAATCACAAAAAATATTTTGTTTT-CTTTAATT
64 GAAAATTAATTTC----AATATTTTATTTTATTTTAACA
** *
112738354 TTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTA
1 TTA-CAT-AA-TTA---AA-T---T-AAATTGTATTTAAAGTTT-ATTTTAAATATTTTATTTTA
112738419 TTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACA
54 TTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACA
*
112738464 TTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
1 TTACATAATTAAATTAAATTGTATTTAAAG-TTTATTTTAAATATTTTATTTTATTT
112738521 CACTTTAATT
Statistics
Matches: 583, Mismatches: 52, Indels: 96
0.80 0.07 0.13
Matches are distributed among these distances:
95 4 0.01
96 8 0.01
98 4 0.01
99 248 0.43
100 30 0.05
101 9 0.02
102 4 0.01
103 4 0.01
104 15 0.03
105 2 0.00
106 1 0.00
107 5 0.01
108 11 0.02
109 109 0.19
110 99 0.17
111 9 0.02
112 2 0.00
113 8 0.01
114 4 0.01
115 7 0.01
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (98 bp):
TTACATAATTAAATTAAATTGTATTTAAAGTTTATTTTAAATATTTTATTTTATTTGAATCACGA
AAATTAATTTCAATATTTTATTTTATTTTAACA
Found at i:112737978 original size:13 final size:14
Alignment explanation
Indices: 112737960--112737989 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
112737950 TTAAGTTGTA
112737960 TTTAAA-ATTTTAT
1 TTTAAATATTTTAT
112737973 TTTAAATATTTTAT
1 TTTAAATATTTTAT
112737987 TTT
1 TTT
112737990 CTTTCACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTAAATATTTTAT
Found at i:112738042 original size:110 final size:110
Alignment explanation
Indices: 112737923--112738599 Score: 825
Period size: 110 Copynumber: 6.4 Consensus size: 110
112737913 TTAATATTTT
* * * *
112737923 ATTTTATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAATTTTATTTTAAATATTTTAT
1 ATTTTATTTTCAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTAT
*
112737987 TTTCTTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
65 TTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
112738033 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATT
1 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
*
112738098 TTATTTTACTTTAATTTAATCACG-AAAATATTTTGTTTTCTTTA
66 TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
112738142 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA--
1 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
* * *** *
112738205 -T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-
66 TTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTA
* * * *
112738241 ATTTTATTTT-AACATTACATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTAT
1 ATTTTATTTTCAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTAT
*
112738305 TTTATTTCACTTTAATTTAATCACAAAAAATATTTTGTTTTCTTTA
65 TTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
* *
112738351 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTA--
1 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
* * *** *
112738414 -T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-
66 TTATTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTA
* * *
112738450 ATTTTATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTAT
1 ATTTTATTTTCAA-TTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTAT
112738514 TTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
65 TTTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
112738560 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTT
1 ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTT
112738600 TCAAGTTCAC
Statistics
Matches: 482, Mismatches: 53, Indels: 64
0.80 0.09 0.11
Matches are distributed among these distances:
98 4 0.01
99 118 0.24
100 23 0.05
101 13 0.03
102 3 0.01
103 6 0.01
104 3 0.01
105 4 0.01
106 4 0.01
107 3 0.01
108 12 0.02
109 116 0.24
110 167 0.35
111 6 0.01
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (110 bp):
ATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTTAAAGTTTCATTTTAAATATTTTATT
TTATTTCACTTTAATTTAATCACGAAAAATATTTTGTTTTCTTTA
Found at i:112738096 original size:57 final size:57
Alignment explanation
Indices: 112738033--112738208 Score: 199
Period size: 57 Copynumber: 3.2 Consensus size: 57
112738023 GTTTTCTTTA
112738033 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAAT
1 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAAT
* * * * * *
112738090 ATTTTATTTT-ATTTTACTTTAATTTAATCACGAA-AATATTT--TGTTT--TCTTT--A-
1 ATTTTATTTTCAATTTAC-CTAATTAAATTA--AATTATATTTAAAGTTTCAT-TTTAAAT
112738142 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAAT
1 ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAAT
112738199 ATTTTATTTT
1 ATTTTATTTT
112738209 ATTTGAATCA
Statistics
Matches: 94, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
50 2 0.02
51 6 0.06
52 19 0.20
53 11 0.12
54 4 0.04
55 4 0.04
56 11 0.12
57 29 0.31
58 6 0.06
59 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (57 bp):
ATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAAT
Found at i:112738165 original size:52 final size:52
Alignment explanation
Indices: 112737999--112738165 Score: 162
Period size: 57 Copynumber: 3.1 Consensus size: 52
112737989 TCTTTCACTT
112737999 TAATTTAATCACGAAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
1 TAATTTAATCACG-AAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
* * * * * *
112738052 TAATTAAATTA--AATTATATTTAAAG-TTTCATTTTAAATATTTTATTTT-ATTTTACTT
1 TAATTTAATCACGAA-AATATTT--TGTTTTC--TTT--A-ATTTTATTTTCAATTTAC-C
112738109 TAATTTAATCACGAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
1 TAATTTAATCACGAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
112738161 TAATT
1 TAATT
112738166 AAATTAAATT
Statistics
Matches: 89, Mismatches: 12, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
50 2 0.02
51 6 0.07
52 19 0.21
53 17 0.19
54 3 0.03
55 3 0.03
56 8 0.09
57 23 0.26
58 6 0.07
59 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (52 bp):
TAATTTAATCACGAAAATATTTTGTTTTCTTTAATTTTATTTTCAATTTACC
Found at i:112738202 original size:52 final size:52
Alignment explanation
Indices: 112738037--112738203 Score: 139
Period size: 52 Copynumber: 3.1 Consensus size: 52
112738027 TCTTTAATTT
112738037 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
1 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
* * * * * *
112738089 TATTTT-ATTTTATTTTACTTTAATTTAATCACGAA-AATATTT--TGTTT--TCTTTAATTT
1 TATTTTCA----A-TTTAC-CTAATTAAATTA--AATTATATTTAAAGTTTCAT-TTTAA--A
112738146 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
1 TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
112738198 TATTTT
1 TATTTT
112738204 ATTTTATTTG
Statistics
Matches: 86, Mismatches: 12, Indels: 34
0.65 0.09 0.26
Matches are distributed among these distances:
50 2 0.02
51 7 0.08
52 21 0.24
53 9 0.10
54 7 0.08
55 7 0.08
56 9 0.10
57 15 0.17
58 7 0.08
59 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.55
Consensus pattern (52 bp):
TATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAA
Found at i:112738220 original size:209 final size:208
Alignment explanation
Indices: 112737712--112738599 Score: 1257
Period size: 209 Copynumber: 4.3 Consensus size: 208
112737702 ATGGCATACA
*
112737712 TTTGTTTTCTTTAATTATATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
112737777 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
* *
112737842 ATAATTAAATTAAGTTGTATTTAAAGTGTTATTTTAAATATTTTA---T-TTT-A---T--TTGA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
112737897 ATCACGAAAATTAAT
196 ATCACGAAAA-T-AT
** * * * * * * *
112737912 TTTAATAT-TTT-ATTTTATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAATTTTATT
1 TTTGTTTTCTTTAATTTTATTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATT
* * *** *
112737974 TTAAATATTTTATTTTCTTTCACTTTAATTTAATCACGAAAAAT-ATTTTGTTTTCTTTAATTTT
65 TTAAATATTTTA---T-TTT-A---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTT
* * * * *
112738038 ATTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTAT
118 ATTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTAT
*
112738102 TTTACTTTAATTTAATCACGAAAATAT
182 TTCACTTTAATTTAATCACGAAAATAT
112738129 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
112738194 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
*
112738259 ATAATTAAATTAAGTTGTACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
*
112738324 ATCACAAAAAATAT
196 ATCAC-GAAAATAT
112738338 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
112738403 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
112738468 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
112738533 ATCACGAAAAATAT
196 ATCACG-AAAATAT
* *
112738547 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAGTTGTATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTT
112738600 TCAAGTTCAC
Statistics
Matches: 607, Mismatches: 50, Indels: 53
0.85 0.07 0.07
Matches are distributed among these distances:
197 2 0.00
198 53 0.09
199 3 0.00
200 5 0.01
201 1 0.00
202 3 0.00
203 1 0.00
206 1 0.00
207 8 0.01
208 95 0.16
209 335 0.55
210 8 0.01
211 1 0.00
212 1 0.00
213 3 0.00
214 2 0.00
215 3 0.00
216 1 0.00
217 8 0.01
218 4 0.01
219 67 0.11
220 2 0.00
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (208 bp):
TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTA
ATCACGAAAATAT
Found at i:112738542 original size:318 final size:308
Alignment explanation
Indices: 112737712--112738520 Score: 1327
Period size: 318 Copynumber: 2.6 Consensus size: 308
112737702 ATGGCATACA
*
112737712 TTTGTTTTCTTTAATTATATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
112737777 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
*
112737842 ATAATTAAATTAAGTTGTATTTAAAGTGTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
*
112737907 TTAATTTTAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTATTTAAAATTTTA
196 TTAATTTTAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTACTTAAAATTTTA
* *
112737972 TTTTAAATATTTTATTTTCTTTCACTTTAATTTAATCACGAAAAATAT
261 TTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACAAAAAATAT
112738020 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
* *** *
112738085 TAAATATTTTATTTTATTTTACTTTAATTTAATCACGAAAA-T-ATTTTGTTTTCTTTAATTTTA
66 T-AA-A---TATTTTATTTTA---T--TTGAATCACGAAAATTAATTTCAATAT-TTT-ATTTTA
* * * * *
112738148 TTTTCAA-TTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATTTTATT
119 TTTT-AACATTACATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATT
*
112738212 TGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGT
183 TGAATCACGAAAATTAATTTTAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGT
*
112738277 ACTTAAAGTTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACAAAAAATAT
248 ACTTAAAATTTTATTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACAAAAAATAT
112738338 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
1 TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
112738403 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
66 TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
112738468 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
131 ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTT
112738521 CACTTTAATT
Statistics
Matches: 458, Mismatches: 27, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
307 2 0.00
308 141 0.31
309 6 0.01
310 8 0.02
313 24 0.05
316 8 0.02
317 6 0.01
318 261 0.57
319 2 0.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (308 bp):
TTTGTTTTCTTTAATTTTATTTTCAATTTACCTAATTAAATTAAATTATATTTAAAGTTTCATTT
TAAATATTTTATTTTATTTGAATCACGAAAATTAATTTCAATATTTTATTTTATTTTAACATTAC
ATAATTAAATTAAGTTGTATTTAAAGTTTTATTTTAAATATTTTATTTTATTTGAATCACGAAAA
TTAATTTTAATATTTTATTTTATTTTAACATTACATAATTAAATTAAGTTGTACTTAAAATTTTA
TTTTAAATATTTTATTTTATTTCACTTTAATTTAATCACAAAAAATAT
Done.