Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 39 of 444
Found at i:9549733 original size:88 final size:88
Alignment explanation
Indices: 9549626--9549795 Score: 259
Period size: 88 Copynumber: 1.9 Consensus size: 88
9549616 AGCGAAAATA
* * *
9549626 GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCAACTCTTGCAATATGAGTTGATTTTTGAAA
1 GAAAATACCTCAGCATGTGACCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTAAAA
*
9549691 AACATAAATTAAAAATAGAATTT
66 AACAGAAATTAAAAATAGAATTT
* * * **
9549714 GAAAATACCTTAGCATGTGATCCGAGGCTCAACTCACCTCTCGCGGTATGAGTTGATTTTTAAAA
1 GAAAATACCTCAGCATGTGACCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTAAAA
9549779 AACAGAAATTAAAAATA
66 AACAGAAATTAAAAATA
9549796 CCTCAGCGTG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 73 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (88 bp):
GAAAATACCTCAGCATGTGACCCGAGGCTCAACTCAACTCTCGCAATATGAGTTGATTTTTAAAA
AACAGAAATTAAAAATAGAATTT
Found at i:9549824 original size:73 final size:74
Alignment explanation
Indices: 9549701--9550352 Score: 207
Period size: 75 Copynumber: 8.3 Consensus size: 74
9549691 AACATAAATT
* * * * **
9549701 AAAAATAGAATTTGAAAATACCTTAGCATGTGATCCGAGGCTCAACTCACCTCTCGCGGTATGAG
1 AAAAACAGAAATTAAAAATACCTCAGCA-GTGATCCGAGGCTCAACTCACCTCTCGCAATATGAG
9549766 TTGATTTTTA
65 TTGATTTTTA
*
9549776 AAAAACAGAAATTAAAAATACCTCAGC-GTG-TCCTGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTAAAAATACCTCAGCAGTGATCC-GAGGCTCAACTCACCTCTCGCAATATGAG
9549839 TTGATTTTTTTA
65 TTGA--TTTTTA
* * * ** * * * * * *
9549851 AAAGACATAAATTGAAAAA-A-C-AAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCA
1 AAAAACAGAAATT-AAAAATACCTCAGCAGTG---AT--C-C-G-A-G-GCTCA-ACTCACCTCT
* * * *
9549913 C-C-TTTTGCAATATGAGTTGACTTTT
54 CGCAATATG-AGT-TGA-TT---TTTA
* * * * * ** * *
9549938 AAAAAAACA-AGAATTGAAAATACCACAGCGTGTGA-CCTGAGACTAAACTCATTTCTAGTAATA
1 AAAA--ACAGA-AATTAAAAATACCTCAGC-AGTGATCC-GAGGCTCAACTCACCTCTCGCAATA
*
9550001 TGAGTTGATATTTTTG
61 TGAGTTG--ATTTTTA
* * * * * *
9550017 AAAAACAAAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATACGA
1 AAAAACAGAAATTAAAAATACCTCAGC-AGTGATCC-GAGGCTCAACTCACCTCTCGCAATATGA
*
9550081 GTTGACTTTTA
64 GTTGATTTTTA
* * * ** * *
9550092 AAAAGCAGGAATTGAAAATACCTCAGTGTGTGA-CCTGAGGCTCAACTCACCTATCACAATATGA
1 AAAAACAGAAATTAAAAATACCTCAG-CAGTGATCC-GAGGCTCAACTCACCTCTCGCAATATGA
9550156 GTTGATTTTTTTTGA
64 GTTGA---TTTTT-A
* * *
9550171 AATATAA-ATTGGAAAACAGAAATTAAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACTT
1 AA-A-AACA---G-------AAATTAAAAATACCTCAGC-AGTGATCC-GAGGCTCAACTCACCT
* *
9550234 CTCGCAATACGAGTTGACTTTTA
52 CTCGCAATATGAGTTGATTTTTA
* * *
9550257 AAAAACAGGAATTGAAAATACCTCAGCATGTGA-CCTGAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTAAAAATACCTCAGCA-GTGATCC-GAGGCTCAACTCACCTCTCGCAATATGA
*
9550321 GTTGATTTTTT
64 GTTGATTTTTA
**
9550332 TGAAACAGAAATTGAAAAATA
1 AAAAACAGAAATT-AAAAATA
9550353 GAAATTGAAA
Statistics
Matches: 434, Mismatches: 89, Indels: 107
0.69 0.14 0.17
Matches are distributed among these distances:
72 3 0.01
73 34 0.08
74 3 0.01
75 172 0.40
76 11 0.03
77 52 0.12
78 6 0.01
79 10 0.02
80 3 0.01
81 11 0.03
82 9 0.02
83 10 0.02
84 11 0.03
85 15 0.03
86 4 0.01
87 10 0.02
88 5 0.01
89 9 0.02
90 53 0.12
91 1 0.00
92 2 0.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAAACAGAAATTAAAAATACCTCAGCAGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTA
Found at i:9550046 original size:77 final size:74
Alignment explanation
Indices: 9549866--9550166 Score: 297
Period size: 77 Copynumber: 4.0 Consensus size: 74
9549856 CATAAATTGA
*
9549866 AAAAACAAAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTTT-TGCAATATGA
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCA--TTTCTGCAATATGA
* *
9549928 GTTGACTTTTAA
64 GTTGAATTTT-T
* * * * *
9549940 AAAAACAAGAATTGAAAATACCACAGCGTGTGACCTGAGACTAAACTCATTTCTAGTAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCT-GCAATATGAG
9550005 TTGATATTTTT
65 TTGA-ATTTTT
* *** *
9550016 GAAAAACAAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGA
1 -AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCT-GCAATATGA
*
9550081 GTTG-ACTTTT
64 GTTGAATTTTT
** * * *
9550091 AAAAAGCAGGAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTATC-ACAATATG
1 AAAAA-CAAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCA--TTTCTGCAATATG
*
9550155 AGTTGATTTTTT
63 AGTTGAATTTTT
9550167 TTGAAATATA
Statistics
Matches: 186, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
74 36 0.19
75 56 0.30
76 31 0.17
77 63 0.34
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTGCAATATGAGT
TGAATTTTT
Found at i:9550129 original size:75 final size:75
Alignment explanation
Indices: 9549865--9550165 Score: 354
Period size: 75 Copynumber: 4.0 Consensus size: 75
9549855 ACATAAATTG
* * * *
9549865 AAAAAACAAAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTTTTGCAATATGA
1 AAAAAACAAGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
9549928 GTTGACTTTT
66 GTTGACTTTT
* * * ** * *
9549938 AAAAAAACAAGAATTGAAAATACCACAGCGTGTGACCTGAGACTAAACTCATTTCTAGTAATATG
1 -AAAAAACAAGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
9550003 AGTTGATATTTTT
65 AGTTG--ACTTTT
* * * * *
9550016 GAAAAACAAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGA
1 AAAAAACAAGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
9550081 GTTGACTTTT
66 GTTGACTTTT
* * * * *
9550091 AAAAAGCAGGAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTATCACAATATGA
1 AAAAAACAAGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9550156 GTTGATTTTT
66 GTTGACTTTT
9550166 TTTGAAATAT
Statistics
Matches: 188, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
74 29 0.15
75 69 0.37
76 28 0.15
77 57 0.30
78 5 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (75 bp):
AAAAAACAAGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGACTTTT
Found at i:9550303 original size:165 final size:165
Alignment explanation
Indices: 9550014--9550496 Score: 700
Period size: 165 Copynumber: 2.9 Consensus size: 165
9550004 GTTGATATTT
* *
9550014 TTGAAAAACAAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* **
9550079 GAGTTGACTTTTAAAAAGCAGGAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCT
66 GAGTTGACTTTTAAAAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCT
* * * *
9550144 ATCACAATATGAGTTGATTTTTTTTGAAATATAAA
131 CTCGCAATATGAGTTGATTTTTTTTGAAACAGAAA
* * *
9550179 TTGGAAAACAGAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACTTCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
9550244 GAGTTGACTTTTAAAAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCT
66 GAGTTGACTTTTAAAAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCT
*
9550309 CTTGCAATATGAGTTGA-TTTTTTTGAAACAGAAA
131 CTCGCAATATGAGTTGATTTTTTTTGAAACAGAAA
* * * * * *
9550343 TTGAAAAATAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * ** * *
9550408 GAGTTGATTTTTTTGAAAAACA-GAATTTGAAAATACCTTGGCATGTGACCCGAGGCTCAATTCA
66 GAGTTGA--CTTTTAAAAAACAGGAA-TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCA
9550472 CCTCTCGCAATATGAGTTGATTTTT
128 CCTCTCGCAATATGAGTTGATTTTT
9550497 GAAAAACAGA
Statistics
Matches: 285, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
164 78 0.27
165 139 0.49
166 64 0.22
167 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (165 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
GAGTTGACTTTTAAAAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTTTGAAACAGAAA
Found at i:9550306 original size:75 final size:75
Alignment explanation
Indices: 9550183--9550349 Score: 235
Period size: 75 Copynumber: 2.2 Consensus size: 75
9550173 TATAAATTGG
* * * *
9550183 AAAACAGAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACTTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
9550248 TGACTTTTAA
66 TGACTTTTAA
* * *
9550258 AAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* **
9550323 TGATTTTTTT
66 TGACTTTTAA
*
9550333 GAAACAGAAATTGAAAA
1 AAAACAGAAATTGAAAA
9550350 ATAGAAATTG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 80 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGACTTTTAA
Found at i:9550408 original size:89 final size:90
Alignment explanation
Indices: 9550257--9550440 Score: 282
Period size: 89 Copynumber: 2.0 Consensus size: 90
9550247 TTGACTTTTA
* * * *
9550257 AAAAACAGGAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAG
9550322 TTGATTTTTTTG-AAACAGAAATTG
66 TTGATTTTTTTGAAAACAGAAATTG
*
9550346 AAAAATAGAAATTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAG-CATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
9550410 GTTGATTTTTTTGAAAAACAGAATTTG
65 GTTGATTTTTTTG-AAAACAGAAATTG
9550437 AAAA
1 AAAA
9550441 TACCTTGGCA
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
88 1 0.01
89 70 0.81
91 15 0.17
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTAACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAGAAATTG
Found at i:9550473 original size:77 final size:75
Alignment explanation
Indices: 9550343--9550514 Score: 265
Period size: 77 Copynumber: 2.3 Consensus size: 75
9550333 GAAACAGAAA
*
9550343 TTGAAAAATAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATAT
9550408 GAGTTGATTTTT
66 GAGTTGA--TTT
* * * * *
9550420 TTGAAAAACAGAATTTGAAAATACCTTGGCATGTGACCCGAGGCTCAATTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATAT
9550485 GAGTTGATTT
66 GAGTTGATTT
9550495 TTGAAAAACAGAAATT-AAAA
1 TTGAAAAACAGAAATTGAAAA
9550515 CATCAAAGTA
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
74 4 0.05
75 18 0.20
77 66 0.75
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTT
Found at i:9563829 original size:26 final size:26
Alignment explanation
Indices: 9563793--9563876 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
9563783 CATGAAATTC
9563793 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
9563819 TTATCATGAAACATTTACCTAGCCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
9563845 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
9563871 TTATCA
1 TTATCA
9563877 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:9565644 original size:20 final size:21
Alignment explanation
Indices: 9565598--9565644 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
9565588 AATGATTTAT
*
9565598 AAATATATACGTATATGTATTA
1 AAATATATACGTATA-GTAATA
9565620 AAATATATACGTA-A-TAATA
1 AAATATATACGTATAGTAATA
9565639 AGAATA
1 A-AATA
9565645 AAAAGTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 4 0.17
21 1 0.04
22 13 0.57
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (21 bp):
AAATATATACGTATAGTAATA
Found at i:9565691 original size:25 final size:22
Alignment explanation
Indices: 9565674--9565718 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 22
9565664 TAAAAAAGTG
9565674 TACATAATATAGCGTTAAAAATACA
1 TACATAATATA--GTTAAAAA-ACA
9565699 TACATAATATAGTTAAAAAA
1 TACATAATATAGTTAAAAAA
9565719 ATATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 1 0.05
23 8 0.40
25 11 0.55
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.29
Consensus pattern (22 bp):
TACATAATATAGTTAAAAAACA
Found at i:9565750 original size:31 final size:32
Alignment explanation
Indices: 9565694--9565763 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
9565684 AGCGTTAAAA
*
9565694 ATACAT-ACATAATATAGTTAAAAAAATATAT
1 ATACATAACATAATATAGTTAAAAAAAAATAT
*
9565725 ATACATAAGATAATAT-G-TAAGAAAAAAATAT
1 ATACATAACATAATATAGTTAA-AAAAAAATAT
*
9565756 ATAAATAA
1 ATACATAA
9565764 TACAGTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 3 0.09
31 23 0.68
32 8 0.24
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (32 bp):
ATACATAACATAATATAGTTAAAAAAAAATAT
Found at i:9565914 original size:25 final size:24
Alignment explanation
Indices: 9565833--9566045 Score: 181
Period size: 23 Copynumber: 8.8 Consensus size: 24
9565823 AATACTACAT
9565833 AAATATATACAT-ATATATATTAA
1 AAATATATACATAATATATATTAA
* *
9565856 ACATAAATACATAATA-ATATTAA
1 AAATATATACATAATATATATTAA
* * *
9565879 AAGTATGTACATAATATAGTGTTAA
1 AAATATATACATAATATA-TATTAA
*
9565904 AAATAAATACATAATATAGTTATTAAAA
1 AAATATATACATAATATA--TATT--AA
*
9565932 AAATATATACATAAGATA-ATATAA
1 AAATATATACATAATATATAT-TAA
* *
9565956 AAATATATACATGAA-ATAGAATAAA
1 AAATATATACAT-AATATA-TATTAA
*
9565981 AAATTTATA-ACTAATA-ATATTAA
1 AAATATATACA-TAATATATATTAA
9566004 AAATATATACATAATATATA-TAA
1 AAATATATACATAATATATATTAA
*
9566027 AAACATATACGAT-ATATAT
1 AAATATATAC-ATAATATAT
9566046 TAGAAATGAT
Statistics
Matches: 155, Mismatches: 20, Indels: 30
0.76 0.10 0.15
Matches are distributed among these distances:
23 64 0.41
24 31 0.20
25 36 0.23
26 6 0.04
28 18 0.12
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATATATACATAATATATATTAA
Found at i:9566252 original size:17 final size:17
Alignment explanation
Indices: 9566230--9566263 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9566220 ATAACTAAAT
*
9566230 ATAATATAATAATAATA
1 ATAATATAAAAATAATA
9566247 ATAATATAAAAATAATA
1 ATAATATAAAAATAATA
9566264 GTGATAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATATAAAAATAATA
Found at i:9568138 original size:10 final size:10
Alignment explanation
Indices: 9568123--9568152 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
9568113 TCTTAGATGC
9568123 ATACAATATA
1 ATACAATATA
*
9568133 ATACAATACA
1 ATACAATATA
9568143 ATACAATATA
1 ATACAATATA
9568153 CAACAGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (10 bp):
ATACAATATA
Found at i:9569147 original size:20 final size:20
Alignment explanation
Indices: 9569121--9569170 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
9569111 CTGGTTCGAT
9569121 CTACCGATACAACCAAAGTG
1 CTACCGATACAACCAAAGTG
*
9569141 TTACCGATACAACCAAAGTG
1 CTACCGATACAACCAAAGTG
9569161 CTACCGATAC
1 CTACCGATAC
9569171 CTTGAGGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.30, G:0.14, T:0.18
Consensus pattern (20 bp):
CTACCGATACAACCAAAGTG
Found at i:9574004 original size:3 final size:3
Alignment explanation
Indices: 9573996--9574077 Score: 119
Period size: 3 Copynumber: 27.3 Consensus size: 3
9573986 TTGTGACCAC
* * * * *
9573996 ATT ATT ATT AAT ATT ATT CTT ATC ATC ATC ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9574044 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9574078 ATGTTATTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:9575616 original size:19 final size:20
Alignment explanation
Indices: 9575579--9575620 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
9575569 AGATATTCGT
*
9575579 ATAATAAAATATGGTATTTA
1 ATAATAAAATATAGTATTTA
9575599 ATAATAAAA-ATAGTATTTA
1 ATAATAAAATATAGTATTTA
9575618 ATA
1 ATA
9575621 TGCAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (20 bp):
ATAATAAAATATAGTATTTA
Found at i:9575997 original size:16 final size:15
Alignment explanation
Indices: 9575961--9576004 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9575951 TAAAAACGTA
*
9575961 ATAATATAAAATGAC
1 ATAATATAAAATAAC
*
9575976 ATAATATAAAATAATT
1 ATAATATAAAATAA-C
*
9575992 ATAATATATAATA
1 ATAATATAAAATA
9576005 TGAAAGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAATATAAAATAAC
Found at i:9576040 original size:13 final size:14
Alignment explanation
Indices: 9575959--9576052 Score: 60
Period size: 13 Copynumber: 6.7 Consensus size: 14
9575949 GATAAAAACG
9575959 TAATAATATAAA-A
1 TAATAATATAAATA
9575972 TGACATAATATAAA-A
1 T-A-ATAATATAAATA
9575987 TAAT--TAT-AATA
1 TAATAATATAAATA
9575998 T-ATAATATGAAAGTA
1 TAATAATAT-AAA-TA
9576013 TATACGTATATATAAATA
1 TA-A--TA-ATATAAATA
9576031 -AATAATAT-AATA
1 TAATAATATAAATA
9576043 TAATAATATA
1 TAATAATATA
9576053 TAAATAAGAA
Statistics
Matches: 66, Mismatches: 0, Indels: 29
0.69 0.00 0.31
Matches are distributed among these distances:
10 4 0.06
11 5 0.08
12 7 0.11
13 15 0.23
14 6 0.09
15 15 0.23
16 1 0.02
17 2 0.03
18 2 0.03
19 5 0.08
20 4 0.06
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (14 bp):
TAATAATATAAATA
Found at i:9576050 original size:20 final size:19
Alignment explanation
Indices: 9575961--9576103 Score: 64
Period size: 20 Copynumber: 7.3 Consensus size: 19
9575951 TAAAAACGTA
*
9575961 ATAATATAAAATGACATAAT
1 ATAATATAAAAT-AAATAAT
* *
9575981 ATAAAAT-AATTATAAT-AT
1 ATAATATAAAATA-AATAAT
* * *
9575999 ATAATATGAAAGTATATACGT
1 ATAATAT-AAAATAAATA-AT
9576020 AT-ATAT-AAATAAATAAT
1 ATAATATAAAATAAATAAT
*
9576037 ATAATATAATAATATATAA-
1 ATAATATAA-AATAAATAAT
*
9576056 ATAAGAATGCAAAA-AAATAAT
1 ATAA-TAT--AAAATAAATAAT
**
9576077 ATTTTATAAAATAACAATAAT
1 ATAATATAAAAT-A-AATAAT
9576098 ATAATA
1 ATAATA
9576104 AAATAATTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 29
0.66 0.13 0.21
Matches are distributed among these distances:
17 3 0.03
18 24 0.27
19 12 0.13
20 32 0.36
21 17 0.19
22 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAATATAAAATAAATAAT
Found at i:9576122 original size:27 final size:27
Alignment explanation
Indices: 9576085--9576149 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
9576075 ATATTTTATA
* * *
9576085 AAATAACAATAATATAATAAAAT-AATT
1 AAATAAAAATAAGATAA-AAAATAAAAT
* *
9576112 ATATAAAAATAAGATTAAAAATAAAAT
1 AAATAAAAATAAGATAAAAAATAAAAT
9576139 AAATAAAAATA
1 AAATAAAAATA
9576150 TAAAGAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAAAAATAAGATAAAAAATAAAAT
Found at i:9578123 original size:40 final size:40
Alignment explanation
Indices: 9578068--9578154 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 40
9578058 ATCTCACATC
* *
9578068 ATAAAAAGGATTGGTGGCGACTCCTATTCTTCTTTTTTAA
1 ATAAAAAGGATTGGTGACGACTCCTATTATTCTTTTTTAA
*
9578108 ATAAAAAGGATTGGTGATGACTCCTATTATTCTTTTTTAA
1 ATAAAAAGGATTGGTGACGACTCCTATTATTCTTTTTTAA
9578148 ATAAAAA
1 ATAAAAA
9578155 TCGATTTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (40 bp):
ATAAAAAGGATTGGTGACGACTCCTATTATTCTTTTTTAA
Found at i:9584688 original size:2 final size:2
Alignment explanation
Indices: 9584681--9584715 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
9584671 TGTAGGAAGT
*
9584681 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9584716 GATGTTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:9589295 original size:18 final size:18
Alignment explanation
Indices: 9589261--9589295 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9589251 AAGCATAAAA
*
9589261 TTCTTCATTTCCCTCATC
1 TTCTTCATTTCCATCATC
*
9589279 TTCTTCATTTCTATCAT
1 TTCTTCATTTCCATCAT
9589296 ACTCTAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.54
Consensus pattern (18 bp):
TTCTTCATTTCCATCATC
Found at i:9590873 original size:42 final size:42
Alignment explanation
Indices: 9590811--9590891 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
9590801 AATTAAGTGC
* *
9590811 TTGCAATCACTCTTAGTATGTCGTGTTTGAATTGTGATATGT
1 TTGCAATCACTCTAAATATGTCGTGTTTGAATTGTGATATGT
9590853 TTGCAATCACTCTAAATATGTCGTGTTTGAATTGTGATA
1 TTGCAATCACTCTAAATATGTCGTGTTTGAATTGTGATA
9590892 AAGTCAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (42 bp):
TTGCAATCACTCTAAATATGTCGTGTTTGAATTGTGATATGT
Found at i:9591073 original size:33 final size:33
Alignment explanation
Indices: 9591033--9591137 Score: 156
Period size: 33 Copynumber: 3.2 Consensus size: 33
9591023 TTTTAAAAAA
*
9591033 AATTATAATATAAAAACAATGTATATAAGCTGT
1 AATTATAATACAAAAACAATGTATATAAGCTGT
** * *
9591066 AATTATAATAGGAAAACAATGTATGTAAGCTGC
1 AATTATAATACAAAAACAATGTATATAAGCTGT
*
9591099 AATTATAATACAAAAACAATGTATCTAAGCTGT
1 AATTATAATACAAAAACAATGTATATAAGCTGT
9591132 AATTAT
1 AATTAT
9591138 CTGTCTAATT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (33 bp):
AATTATAATACAAAAACAATGTATATAAGCTGT
Found at i:9591295 original size:3 final size:3
Alignment explanation
Indices: 9591287--9591333 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
9591277 AGTAACATCA
9591287 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9591334 AGGATATTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9597088 original size:38 final size:38
Alignment explanation
Indices: 9597037--9597112 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
9597027 ATGCACACAC
9597037 ACAGATACACCCAGTTAACCGAGTTCAGAATCATACTT
1 ACAGATACACCCAGTTAACCGAGTTCAGAATCATACTT
9597075 ACAGATACACCCAGTTAACCGAGTTCAGAATCATACTT
1 ACAGATACACCCAGTTAACCGAGTTCAGAATCATACTT
9597113 CAGTCACAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (38 bp):
ACAGATACACCCAGTTAACCGAGTTCAGAATCATACTT
Found at i:9600762 original size:17 final size:18
Alignment explanation
Indices: 9600709--9600815 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
9600699 AATCATATCT
*
9600709 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
9600728 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
9600746 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
9600763 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
9600781 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
9600798 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
9600816 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:9600767 original size:35 final size:35
Alignment explanation
Indices: 9600709--9600815 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
9600699 AATCATATCT
9600709 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
9600746 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
9600781 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
9600816 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:9601693 original size:83 final size:83
Alignment explanation
Indices: 9601581--9602133 Score: 903
Period size: 83 Copynumber: 6.7 Consensus size: 83
9601571 GTGAAAGCCA
* * *
9601581 AATCAGCTATGT-CTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTAAGTCTGTTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
*
9601645 GAGAACATCTGAGAGTCA
66 GAGAACATCTGAGAGTCT
** * *
9601663 AATCTGCTATGTCCTCGATTTGTTTTTTGTAAGCACAAGAATGCCAAATCATCTTGAGTCTGTTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
*
9601728 GAGAACATCTGAGAGTCA
66 GAGAACATCTGAGAGTCT
*
9601746 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACTATCTTGAGTCTGTTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
9601811 GAGAACATCTGAGAGTCT
66 GAGAACATCTGAGAGTCT
* * *
9601829 AATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTGAGTCTGTTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
9601894 GAGAACATCTGAGAGTCT
66 GAGAACATCTGAGAGTCT
* * * *
9601912 AATCTGCTATGTCCTCGATTTGTTCCATGTAAGCACAAGGACGCCAAACCATCTTGAATATGTTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
*
9601977 GAGAACATCCGAGAGTCT
66 GAGAACATCTGAGAGTCT
*
9601995 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTATTT
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
*
9602060 GAGAACATCCT-AAAGTCT
66 GAGAACAT-CTGAGAGTCT
9602078 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
9602134 GATCTACTTC
Statistics
Matches: 439, Mismatches: 30, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
82 11 0.03
83 427 0.97
84 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (83 bp):
AATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTT
GAGAACATCTGAGAGTCT
Found at i:9602209 original size:249 final size:248
Alignment explanation
Indices: 9601572--9602189 Score: 737
Period size: 249 Copynumber: 2.5 Consensus size: 248
9601562 CGTAAACACG
* * * * * * * *
9601572 TGAAAGCCAAATCAGCTATGT-CTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTA
1 TGAAAGTCTAATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTG
* * * * **** ***
9601636 AGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTTTTGTAAGCACAA
66 AGTCTCTTAGAAAACATCTGAGAGTCTAATCTGCTATGTCCTC-ATGCCCTCCATGTAAGCACAA
* * * * * *
9601701 GAATGCCAAATCATCTTGAGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATT
130 GGACGCCAAACCATCTTGAATATGTTTGAGAACATCCGAGAGTCAAATCTGCTATGTCCTCGATT
* *
9601766 TGTTCCTTGTAAGCACAAGGATGCCAAACTATCTTGAGTCTGTTTGAGAACATC
195 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTATTTGAGAACATC
*
9601820 TGAGAGTCTAATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTG
1 TGAAAGTCTAATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTG
* * * ****
9601885 AGTCTGTTTGAGAACATCTGAGAGTCTAATCTGCTATGTCCTCGATTTGTTCCATGTAAGCACAA
66 AGTCTCTTAGAAAACATCTGAGAGTCTAATCTGCTATGTCCTC-ATGCCCTCCATGTAAGCACAA
*
9601950 GGACGCCAAACCATCTTGAATATGTTTGAGAACATCCGAGAGTCTAATCTGCTATGTCCTCGATT
130 GGACGCCAAACCATCTTGAATATGTTTGAGAACATCCGAGAGTCAAATCTGCTATGTCCTCGATT
9602015 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTATTTGAGAACATCC
195 TGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTATTTGAGAACAT-C
* * *
9602070 T-AAAGTCTAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAAAGTCTAATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTG
*
9602134 -GATCTACTTCAGTATAAACATCTGA-AGGT-TAAATCTGCTATGT-GTC-TGCCCTCCAT
66 AG-TCT-CTT-AG-A-AAACATCTGAGA-GTCT-AATCTGCTATGTCCTCATGCCCTCCAT
9602190 AGAATATGGA
Statistics
Matches: 327, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
248 18 0.06
249 270 0.83
250 10 0.03
251 1 0.00
252 5 0.02
253 23 0.07
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (248 bp):
TGAAAGTCTAATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGAATACCAAACCATCTTG
AGTCTCTTAGAAAACATCTGAGAGTCTAATCTGCTATGTCCTCATGCCCTCCATGTAAGCACAAG
GACGCCAAACCATCTTGAATATGTTTGAGAACATCCGAGAGTCAAATCTGCTATGTCCTCGATTT
GTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTATTTGAGAACATC
Found at i:9602496 original size:121 final size:121
Alignment explanation
Indices: 9602282--9602501 Score: 325
Period size: 121 Copynumber: 1.8 Consensus size: 121
9602272 ACGTGAAAAC
* * ** *
9602282 CAAATCAGCTATGTCTTCGATTTTCTCCTTGTAAGTACAAGGATACCAAACCATCTTGGATTTGC
1 CAAATCAGCTATGTCCTCAATTTTCTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTGC
* *
9602347 TTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTAAGAACATCTGAGAGT
66 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTAAGAACATCTGAGAGT
* * * *
9602403 CAAATCTGCTATGTCCTCAATTTGT-TCCTTGTAAACATAAGGATGCCAAATCATCTTGGATCTG
1 CAAATCAGCTATGTCCTCAATTT-TCTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTG
9602467 CTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
65 CTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
9602502 CTTCGATCTG
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 86 0.99
122 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (121 bp):
CAAATCAGCTATGTCCTCAATTTTCTCCTTGTAAACACAAGGATACCAAACCATCTTGGATCTGC
TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTAAGAACATCTGAGAGT
Found at i:9602541 original size:44 final size:43
Alignment explanation
Indices: 9602493--9602672 Score: 175
Period size: 44 Copynumber: 4.1 Consensus size: 43
9602483 TGAAGGTTAG
*
9602493 ATCTGCTATCTTCGATCTGTTCTCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTC-ATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
9602537 ATCTGCTATCTTCAACTCATTCCCTATGAACACAGGGATGCC--
1 ATCTGCTATCTTCATCT-GTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
9602579 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTC-ATCTG-TTCCCTATAAACACAGGGATGCCAA
*
9602625 ATCTGCTATTTTCATTCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCA-TCTGTTCCCTATAAACACAGGGATGCCAA
9602669 ATCT
1 ATCT
9602673 TGTTTCTTTG
Statistics
Matches: 106, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 78 0.74
45 12 0.11
46 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (43 bp):
ATCTGCTATCTTCATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:9603608 original size:13 final size:13
Alignment explanation
Indices: 9603586--9603618 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
9603576 GGCCTCTCCA
*
9603586 TTTTTCTTTTT-C
1 TTTTTTTTTTTCC
9603598 TTTTTTTTTTTCC
1 TTTTTTTTTTTCC
9603611 TTTTTTTT
1 TTTTTTTT
9603619 GAAATAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTTCC
Found at i:9610028 original size:17 final size:18
Alignment explanation
Indices: 9609975--9610046 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 18
9609965 AATCATATCT
9609975 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
9609994 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
9610012 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
9610029 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
9610047 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:9610033 original size:35 final size:37
Alignment explanation
Indices: 9609968--9610046 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
9609958 ATTACAAAAT
9609968 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
9610004 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
9610039 CATATCAT
1 CATATCAT
9610047 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:9610044 original size:14 final size:15
Alignment explanation
Indices: 9609989--9610044 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
9609979 AGATTGTATA
9609989 TCATATCTAAGATTG
1 TCATATCTAAGATTG
9610004 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
9610022 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
9610039 -CATATC
1 TCATATC
9610045 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:9610203 original size:20 final size:20
Alignment explanation
Indices: 9610166--9610204 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9610156 TTGGACTTCG
**
9610166 TTTTTTTTTGGGGTTTATTA
1 TTTTTTTTTGGGACTTATTA
*
9610186 TTTTTTTTTTGGACTTATT
1 TTTTTTTTTGGGACTTATT
9610205 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGGACTTATTA
Found at i:9610326 original size:17 final size:17
Alignment explanation
Indices: 9610287--9610323 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
9610277 ACTATCTAAA
9610287 TAAATATTAAATTTAAT
1 TAAATATTAAATTTAAT
*
9610304 TTAATATTAAATTT-AT
1 TAAATATTAAATTTAAT
9610320 TAAA
1 TAAA
9610324 ATAATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAAATATTAAATTTAAT
Found at i:9618549 original size:21 final size:21
Alignment explanation
Indices: 9618489--9618561 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
9618479 GTGCTAAACA
*
9618489 GAAACCCGTAAGGGTTAAATG
1 GAAACCCATAAGGGTTAAATG
* ** *
9618510 GAAGCTTAT-AGGAGCTAAATG
1 GAAACCCATAAGG-GTTAAATG
*
9618531 GAAACCCATAAGGGTTAAATT
1 GAAACCCATAAGGGTTAAATG
*
9618552 GAAACTCATA
1 GAAACCCATA
9618562 TGAGTTGACT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
20 3 0.08
21 33 0.85
22 3 0.08
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (21 bp):
GAAACCCATAAGGGTTAAATG
Found at i:9621339 original size:40 final size:40
Alignment explanation
Indices: 9621284--9621365 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
9621274 TTAATTAATG
9621284 AATGTTCAGGGATTTATGTGGCCATTAACCACATTCTAAA
1 AATGTTCAGGGATTTATGTGGCCATTAACCACATTCTAAA
9621324 AATGTTCAGGGATTTATGTGGCCATTAACCACATTCTAAA
1 AATGTTCAGGGATTTATGTGGCCATTAACCACATTCTAAA
9621364 AA
1 AA
9621366 CCATGGATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (40 bp):
AATGTTCAGGGATTTATGTGGCCATTAACCACATTCTAAA
Found at i:9639771 original size:29 final size:24
Alignment explanation
Indices: 9639692--9639761 Score: 113
Period size: 24 Copynumber: 2.8 Consensus size: 24
9639682 TTTCTTAATC
9639692 AATAATGAAAAAAACAAAATAATAAA
1 AATAATG--AAAAACAAAATAATAAA
9639718 AATAATGAAAAACAAAATAATAAA
1 AATAATGAAAAACAAAATAATAAA
*
9639742 ATTAATGAAAAACAAAATAA
1 AATAATGAAAAACAAAATAA
9639762 AATTGGAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 36 0.84
26 7 0.16
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (24 bp):
AATAATGAAAAACAAAATAATAAA
Found at i:9651430 original size:21 final size:21
Alignment explanation
Indices: 9651406--9651470 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
9651396 AAATCTAACT
9651406 GAAGCACAAAAGTGCTAAACG
1 GAAGCACAAAAGTGCTAAACG
** *
9651427 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACAAAAGTGCTAAACG
*
9651445 GAAGCACATAAGTGCTAAACG
1 GAAGCACAAAAGTGCTAAACG
9651466 GAAGC
1 GAAGC
9651471 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.42, C:0.22, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACAAAAGTGCTAAACG
Found at i:9651446 original size:39 final size:39
Alignment explanation
Indices: 9651400--9651488 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
9651390 AACCCGAAAT
9651400 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
*
9651439 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
9651478 CTAACTGAAGC
1 CTAACTGAAGC
9651489 TCATCAGAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.39, C:0.24, G:0.25, T:0.12
Consensus pattern (39 bp):
CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
Found at i:9661666 original size:16 final size:16
Alignment explanation
Indices: 9661638--9661679 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
9661628 AAAAATATTT
9661638 TAAACAAATATAAATA
1 TAAACAAATATAAATA
*
9661654 TAAATCAAA-ATAAATC
1 TAAA-CAAATATAAATA
*
9661670 TAGACAAATA
1 TAAACAAATA
9661680 ATTATTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (16 bp):
TAAACAAATATAAATA
Found at i:9661760 original size:18 final size:17
Alignment explanation
Indices: 9661737--9661776 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
9661727 TTTAGAATAA
9661737 AAAATTAAAAAAATTATT
1 AAAATTAAAAAAATT-TT
*
9661755 AAAATTATAAAAATTTT
1 AAAATTAAAAAAATTTT
9661772 AAAAT
1 AAAAT
9661777 CATTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATTAAAAAAATTTT
Found at i:9661782 original size:9 final size:9
Alignment explanation
Indices: 9661746--9661784 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
9661736 AAAAATTAAA
9661746 AAAATTATT
1 AAAATTATT
*
9661755 AAAATTATA
1 AAAATTATT
9661764 AAAATT-TT
1 AAAATTATT
*
9661772 AAAATCATT
1 AAAATTATT
9661781 AAAA
1 AAAA
9661785 ACTATAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
8 6 0.23
9 20 0.77
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAATTATT
Found at i:9662122 original size:20 final size:18
Alignment explanation
Indices: 9662072--9662122 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
9662062 AAAGATCCAA
*
9662072 TTTATGATTTTTTATAAT
1 TTTATGATTTTTAATAAT
9662090 TGTTAT-ATATTTTCAATAAAT
1 T-TTATGAT-TTTT-AAT-AAT
9662111 TTTATGATTTTT
1 TTTATGATTTTT
9662123 TACCATCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 3 0.11
19 8 0.30
20 10 0.37
21 6 0.22
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (18 bp):
TTTATGATTTTTAATAAT
Found at i:9662170 original size:17 final size:19
Alignment explanation
Indices: 9662138--9662175 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
9662128 TCTTAATTAA
9662138 TTTATAACATTTTTATGTT
1 TTTATAACATTTTTATGTT
9662157 TTTATAA-A-TTTTATGTT
1 TTTATAACATTTTTATGTT
9662174 TT
1 TT
9662176 GAATTAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 1 0.05
19 7 0.37
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTATAACATTTTTATGTT
Found at i:9665857 original size:2 final size:2
Alignment explanation
Indices: 9665852--9665886 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9665842 TTTTTACCAG
9665852 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
9665887 TATATAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:9667090 original size:19 final size:21
Alignment explanation
Indices: 9667066--9667107 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
9667056 AGCAAAAATT
*
9667066 AAAAT-ATGTAAAAAT-TAAA
1 AAAATAATATAAAAATATAAA
9667085 AAAATAATATAAAAATATAAA
1 AAAATAATATAAAAATATAAA
9667106 AA
1 AA
9667108 TAAATTTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 9 0.45
21 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
AAAATAATATAAAAATATAAA
Found at i:9669600 original size:3 final size:3
Alignment explanation
Indices: 9669592--9669642 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
9669582 TTGTTAACCA
9669592 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9669639 AAT A
1 AAT A
9669643 CAAAAGTAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9672466 original size:21 final size:20
Alignment explanation
Indices: 9672436--9672475 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
9672426 CATTTTAAAT
*
9672436 GTTTATTTACTTTTAATTTA
1 GTTTATTTACTTTAAATTTA
9672456 GTTTAATTTACTTTAAATTT
1 GTTT-ATTTACTTTAAATTT
9672476 TAATTTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (20 bp):
GTTTATTTACTTTAAATTTA
Found at i:9676426 original size:33 final size:32
Alignment explanation
Indices: 9676359--9676438 Score: 81
Period size: 33 Copynumber: 2.5 Consensus size: 32
9676349 ATTTTATGAT
**
9676359 ATTATTTAAATA-TAATTTATCATTATATCAA
1 ATTATTTAAATATTAAAATATCATTATATCAA
* **
9676390 ATTATTTAAATATTACAAATATTATTATATTTA
1 ATTATTTAAATATTA-AAATATCATTATATCAA
*
9676423 ATTATTTTAAAAATTA
1 ATTA-TTTAAATATTA
9676439 TTTATAATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 12 0.30
32 2 0.05
33 16 0.40
34 10 0.25
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (32 bp):
ATTATTTAAATATTAAAATATCATTATATCAA
Found at i:9676438 original size:25 final size:25
Alignment explanation
Indices: 9676392--9676440 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9676382 TATATCAAAT
*
9676392 TATTTAAATATTACAAATATTATTA
1 TATTTAAATATTACAAAAATTATTA
* **
9676417 TATTTAATTATTTTAAAAATTATT
1 TATTTAAATATTACAAAAATTATT
9676441 TATAATTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTTAAATATTACAAAAATTATTA
Found at i:9688620 original size:27 final size:26
Alignment explanation
Indices: 9688585--9688761 Score: 110
Period size: 27 Copynumber: 6.7 Consensus size: 26
9688575 GTATAAAAAC
* * *
9688585 ATTTCGTATAAACATTTCATATATCT
1 ATTTCATATAATCATTTCATATAACT
* *
9688611 ATTTCCGTATAATCGA-TTCATATAACC
1 ATTT-CATATAATC-ATTTCATATAACT
* * * *
9688638 ATTTCGTATATTTATTTTCATATAACC
1 ATTTCATATAATCA-TTTCATATAACT
*
9688665 ATTCCATAT-ATCTATTTCCATATAACT
1 ATTTCATATAATC-ATTT-CATATAACT
* * *
9688692 AATTCATATAACCATTTCATATATCT
1 ATTTCATATAATCATTTCATATAACT
*
9688718 ATTTCCATATAACTGA-TTCATATAAAC-
1 ATTT-CATATAA-TCATTTCATAT-AACT
* *
9688745 ATTTCATTTATTCATTT
1 ATTTCATATAATCATTT
9688762 TTTTTCACCT
Statistics
Matches: 119, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
25 3 0.03
26 33 0.28
27 77 0.65
28 6 0.05
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45
Consensus pattern (26 bp):
ATTTCATATAATCATTTCATATAACT
Found at i:9688673 original size:40 final size:39
Alignment explanation
Indices: 9688591--9688728 Score: 116
Period size: 40 Copynumber: 3.4 Consensus size: 39
9688581 AAACATTTCG
* * * *
9688591 TATAAACATTTCATATATCTATTTCCGTATAATCGATTCA
1 TATAACCATTTCATATATCTATTTTCATATAA-CCATTCA
* *
9688631 TATAACCATTTCGTATATTTATTTTCATATAACCATTCCA
1 TATAACCATTTCATATATCTATTTTCATATAACCATT-CA
* * * *
9688671 TATATCTATTTCCATATAACTA-ATTCATATAACCATTTCA
1 TATAACCATTT-CATATATCTATTTTCATATAACCA-TTCA
* *
9688711 TATATCTATTTCCATATA
1 TATAACCATTT-CATATA
9688729 ACTGATTCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.05
40 70 0.84
41 9 0.11
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (39 bp):
TATAACCATTTCATATATCTATTTTCATATAACCATTCA
Found at i:9688729 original size:40 final size:40
Alignment explanation
Indices: 9688654--9688751 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
9688644 TATATTTATT
*
9688654 TTCATATAACCATTCCATATATCTATTTCCATATAACTAA
1 TTCATATAACCATTTCATATATCTATTTCCATATAACTAA
*
9688694 TTCATATAACCATTTCATATATCTATTTCCATATAACTGA
1 TTCATATAACCATTTCATATATCTATTTCCATATAACTAA
*
9688734 TTCATATAAACATTTCAT
1 TTCATATAACCATTTCAT
9688752 TTATTCATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.37, C:0.20, G:0.01, T:0.42
Consensus pattern (40 bp):
TTCATATAACCATTTCATATATCTATTTCCATATAACTAA
Found at i:9688730 original size:67 final size:67
Alignment explanation
Indices: 9688591--9688730 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 67
9688581 AAACATTTCG
* * * * * * *
9688591 TATAAACATTTCATATATCTATTTCCGTATAATCGATTCATATAACCATTTCGTATATTTATTTT
1 TATAACCATTCCATATATCTATTTCCATATAATCAATTCATATAACCATTTCATATATCTATTTC
9688656 CA
66 CA
9688658 TATAACCATTCCATATATCTATTTCCATATAA-CTAATTCATATAACCATTTCATATATCTATTT
1 TATAACCATTCCATATATCTATTTCCATATAATC-AATTCATATAACCATTTCATATATCTATTT
9688722 CCA
65 CCA
9688725 TATAAC
1 TATAAC
9688731 TGATTCATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
66 1 0.02
67 64 0.98
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (67 bp):
TATAACCATTCCATATATCTATTTCCATATAATCAATTCATATAACCATTTCATATATCTATTTC
CA
Found at i:9688739 original size:13 final size:13
Alignment explanation
Indices: 9688585--9688751 Score: 108
Period size: 13 Copynumber: 12.5 Consensus size: 13
9688575 GTATAAAAAC
*
9688585 ATTTCGTATAAAC-
1 ATTTCATAT-AACT
*
9688598 ATTTCATATATCT
1 ATTTCATATAACT
* *
9688611 ATTTCCGTATAATCG
1 ATTT-CATATAA-CT
*
9688626 A-TTCATATAACC
1 ATTTCATATAACT
* **
9688638 ATTTCGTATATTT
1 ATTTCATATAACT
*
9688651 ATTTTCATATAACC
1 A-TTTCATATAACT
* *
9688665 ATTCCATATATCT
1 ATTTCATATAACT
9688678 ATTTCCATATAACT
1 ATTT-CATATAACT
* *
9688692 AATTCATATAACC
1 ATTTCATATAACT
*
9688705 ATTTCATATATCT
1 ATTTCATATAACT
9688718 ATTTCCATATAACT
1 ATTT-CATATAACT
9688732 GA-TTCATATAAAC-
1 -ATTTCATAT-AACT
9688745 ATTTCAT
1 ATTTCAT
9688752 TTATTCATTT
Statistics
Matches: 118, Mismatches: 26, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
12 5 0.04
13 70 0.59
14 40 0.34
15 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.44
Consensus pattern (13 bp):
ATTTCATATAACT
Found at i:9688838 original size:25 final size:25
Alignment explanation
Indices: 9688810--9688878 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
9688800 ACGCGGGAAG
*
9688810 AATGCTCACACAAGCTGTGACTGTA
1 AATGCTCACACAAGCTGTGACTATA
* *
9688835 AATGCTCACACAATCTGTAACTATA
1 AATGCTCACACAAGCTGTGACTATA
* *
9688860 ATTTCTCACA-AGAGCTGTG
1 AATGCTCACACA-AGCTGTG
9688879 GGTCGGGATG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (25 bp):
AATGCTCACACAAGCTGTGACTATA
Found at i:9690582 original size:22 final size:22
Alignment explanation
Indices: 9690517--9690587 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
9690507 TGCACATGGA
*
9690517 TATGAAAGTCCTTTACA-AGTAG
1 TATGAAAGCCCTTT-CAGAGTAG
* *
9690539 AATGAAAGCCCTTT-ATGGGTAG
1 TATGAAAGCCCTTTCA-GAGTAG
*
9690561 TATGAAAACCCTTTCAGAGTAG
1 TATGAAAGCCCTTTCAGAGTAG
9690583 TATGA
1 TATGA
9690588 GACTTTGTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (22 bp):
TATGAAAGCCCTTTCAGAGTAG
Found at i:9690691 original size:37 final size:37
Alignment explanation
Indices: 9690641--9690728 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
9690631 ACTCCATGGC
**
9690641 CATGGCATAATCCAAGAAGGTTTGCCAGATTCACCTA
1 CATGGCATAATCCAAGAAGGTCCGCCAGATTCACCTA
* * * * *
9690678 CATGGCATAATCCATGGAGGTCCGCTAGATTCACTTG
1 CATGGCATAATCCAAGAAGGTCCGCCAGATTCACCTA
9690715 CATGGCATAATCCA
1 CATGGCATAATCCA
9690729 GTAGAAGTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (37 bp):
CATGGCATAATCCAAGAAGGTCCGCCAGATTCACCTA
Found at i:9692982 original size:46 final size:44
Alignment explanation
Indices: 9692917--9693088 Score: 176
Period size: 46 Copynumber: 4.0 Consensus size: 44
9692907 TTATCTTTGA
* * * *
9692917 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCT-T
**
9692963 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC-T-T
**
9693009 CACATTGCCATGGTATCTTTCAACCATGGTCTTA--CA---C-T
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCTT
* *
9693047 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC
9693089 ATATCAGAGA
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
38 33 0.31
40 2 0.02
41 1 0.01
43 1 0.01
44 2 0.02
45 4 0.04
46 65 0.60
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (44 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCTT
Found at i:9697596 original size:15 final size:15
Alignment explanation
Indices: 9697566--9697616 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
9697556 TTAAATACTC
*
9697566 TTATTATTTTTA-TA
1 TTATTAATTTTATTA
9697580 TTATTAATTTTATTA
1 TTATTAATTTTATTA
**
9697595 TTATTAATACTATTA
1 TTATTAATTTTATTA
9697610 TGTATTA
1 T-TATTA
9697617 GTTTATGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 11 0.34
15 16 0.50
16 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATTAATTTTATTA
Found at i:9709250 original size:33 final size:32
Alignment explanation
Indices: 9709178--9709252 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
9709168 AGGAGTGGAG
*
9709178 TACTGCAGTGGATACGGGCCGGGGCAGTGCTA
1 TACTGCGGTGGATACGGGCCGGGGCAGTGCTA
* *
9709210 TAATGCGGTGGATATGGGCCGGGAG-AGGTGCTA
1 TACTGCGGTGGATACGGGCCGGG-GCA-GTGCTA
*
9709243 TGCTGCGGTG
1 TACTGCGGTG
9709253 TGTACGACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.17, C:0.17, G:0.44, T:0.21
Consensus pattern (32 bp):
TACTGCGGTGGATACGGGCCGGGGCAGTGCTA
Found at i:9709388 original size:72 final size:72
Alignment explanation
Indices: 9709297--9709437 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
9709287 TCCCCCCGAT
*
9709297 GAGCCCGAGAAATTGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
9709362 CGATGAC
66 CGATGAC
* * * * *
9709369 GAGCCC-AGAAAATAGTCATTGCCTGCCAAATCCGGATGATAAGAAGTATTAGTCGAATGTGAAT
1 GAGCCCGAG-AAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAAT
9709433 GCGAT
65 GCGAT
9709438 CGCTCGGACT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
71 2 0.03
72 60 0.97
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.21
Consensus pattern (72 bp):
GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATG
CGATGAC
Found at i:9711515 original size:22 final size:21
Alignment explanation
Indices: 9711487--9711528 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
9711477 TAGTACATAA
9711487 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
9711509 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
9711529 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:9711579 original size:15 final size:14
Alignment explanation
Indices: 9711559--9711622 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
9711549 ACTTTATTCA
9711559 TATTTTTTCGTATAT
1 TATTTTTTC-TATAT
* *
9711574 TATTTTTT-AAAAT
1 TATTTTTTCTATAT
*
9711587 ATATTATTTTCTTATTT
1 -TATT-TTTTC-TATAT
9711604 TATTTTTT-TATAT
1 TATTTTTTCTATAT
9711617 TATTTT
1 TATTTT
9711623 AGCAAAAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 13 0.33
14 4 0.10
15 16 0.41
16 4 0.10
17 2 0.05
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (14 bp):
TATTTTTTCTATAT
Found at i:9711608 original size:13 final size:13
Alignment explanation
Indices: 9711586--9711622 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9711576 TTTTTTAAAA
9711586 TATATTATTTTCT
1 TATATTATTTTCT
* *
9711599 TATTTTATTTTTT
1 TATATTATTTTCT
9711612 TATATTATTTT
1 TATATTATTTT
9711623 AGCAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
TATATTATTTTCT
Found at i:9711690 original size:145 final size:144
Alignment explanation
Indices: 9711312--9712655 Score: 1128
Period size: 145 Copynumber: 9.2 Consensus size: 144
9711302 TATTTTCATA
* *
9711312 TATTATTTTTATATTATTTTAGCAAAAATGTTTTAAATGTATTATGTAAGTATTTTTTATATTAA
1 TATT-TTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAA
* * *
9711377 TTTAATAAATAACACTGATTTTGACACTTT-TTCGTATTTTTTTCGTATCTT-TTTTTT-AAATA
65 TTTAATAAATAACCCTGATTTTGACACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAAATA
*
9711439 TATTACTTTCGTA--T
129 TATTATTTTCGTATTT
* * * * * * **
9711453 TATTTAATTTTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATTTAAGTGTTTTAAA
1 TATTT--TTTT-ATA---TTATTTTAGCA-AAAATGTTTCAAATGTATTATTTAAGTATTTTTTA
**
9711518 TATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCATATTTTTTCGTATATTATTTTTT
59 TATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCATATTTTTTCGTATATTATTTTTT
*
9711582 AAAATATATTATTTTCTTATTT
123 AAAATATATTATTTTCGTATTT
* *
9711604 TATTTTTTTATATTATTTTAGCAAAAATGTTTTAAATGTATTATGTAAGTATTTTTTTATATTAA
1 TATTTTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATTTAAGTA-TTTTTTATATTAA
* * *
9711669 TTTAATAAATAACACTGATTTTGACACTTT-TTTAT-TTTTTTCGTATCTT-TTTTTT-AAATAT
65 TTTAATAAATAACCCTGATTTTGACACTTTATTCATATTTTTTCGTATATTATTTTTTAAAATAT
*
9711730 ATTACTTTCGTA--T
130 ATTATTTTCGTATTT
* * ** * * * **
9711743 TATTTAATTTTAAAACCCTTATTTTAGTACTAATGTTTTAAATATATTATTTAAGTGTTTTAAAT
1 TATTT--TTTT-ATA---TTATTTTAGCAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTAT
**
9711808 ATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCATA-TTTTTCGTATATTATTTTTTA
60 ATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCATATTTTTTCGTATATTATTTTTTA
* *
9711871 AAATATATTACTTTCCTATTT
124 AAATATATTATTTTCGTATTT
9711892 TA-TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTT
1 TATTTTTTTATATTATTTTAGC-AAAAATGTTTCAAATGTATTAT-T-TA--A-GT-A----TTT
* ** * *
9711956 TTTATACTAATTTAATAAATAACCCTGATTTTGACACTTT-TTTGTATTTTTTTGTATCTTATTT
55 TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCATATTTTTTCGTATATTATTT
9712020 TTTAAAATATATTATTTTCGTATTT
120 TTTAAAATATATTATTTTCGTATTT
* * * *
9712045 TATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAA-TATTTTTTATATT-
1 TATTTTTTTATATTATTTTAGCA-AAAATGTTTCAAATGTATTATTT-AAGTATTTTTTATATTA
* * *
9712108 TTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAA
64 ATTT-AATAAATAACCCTGATTTTGA-CACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAA
*
9712172 ATATATT-TTTTCTTATTT
126 ATATATTATTTTCGTATTT
*** * * *
9712190 TA-TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTGTTTCTTTATATTA
1 TATTTTTTTATATTATTTTAGC-AAAAATGTTTCAAATGTATTATTTAAGTATTT-TTTATATTA
* * * * *
9712254 AGGGTTTTTTACTAAATAACCCTAATTTTGATACTTTCTTCGTAATTTTTTTATTTTCGTATATT
64 A------TTTAATAAATAACCCTGATTTTGACACTTTATTC---A---TATT-TTTTCGTATATT
* *
9712319 ATTTTTTAATATATAATATTTTCGTATTT
116 ATTTTTTAAAATATATTATTTTCGTATTT
* * * * *
9712348 TATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATT-T
1 TATTTTTTTATATTATTTTAGCA-AAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAA
*
9712412 TTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAAT
65 TTTAATAAATAACCCTGATTTTGA-CACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAAAT
*
9712476 ATATTATTTT-G----G
128 ATATTATTTTCGTATTT
**
9712488 TA------T-T-TTATTTTAGCATAAAATCATTCAAATGTATTATTTAAGT-TTTTTTATATTAA
1 TATTTTTTTATATTATTTTAGCA-AAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAA
* * * * * * *
9712544 TTTAATAAGTAA-CCTGACTTTGGCACATTGTTCGTATTTTTTTATTTTCAG-ATTTTATTTTTT
65 TTTAATAAATAACCCTGATTTTGACACTTTATTC--A---TATT-TTTTC-GTATATTATTTTTT
* * * *
9712607 TAATTATACTATTTTCATATTT
123 AAAATATATTATTTTCGTATTT
*
9712629 TATTTTTTTATATTATTTTAACAAAAA
1 TATTTTTTTATATTATTTTAGCAAAAA
9712656 ACTCGTCACC
Statistics
Matches: 977, Mismatches: 133, Indels: 179
0.76 0.10 0.14
Matches are distributed among these distances:
131 27 0.03
132 45 0.05
133 1 0.00
134 1 0.00
135 2 0.00
136 29 0.03
137 1 0.00
139 6 0.01
140 3 0.00
141 26 0.03
142 21 0.02
143 40 0.04
144 138 0.14
145 158 0.16
146 53 0.05
147 92 0.09
148 23 0.02
149 34 0.03
150 1 0.00
151 59 0.06
152 9 0.01
153 79 0.08
154 37 0.04
156 2 0.00
157 28 0.03
158 21 0.02
159 41 0.04
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (144 bp):
TATTTTTTTATATTATTTTAGCAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAAT
TTAATAAATAACCCTGATTTTGACACTTTATTCATATTTTTTCGTATATTATTTTTTAAAATATA
TTATTTTCGTATTT
Found at i:9711801 original size:22 final size:21
Alignment explanation
Indices: 9711776--9711817 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
9711766 TTAGTACTAA
9711776 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
9711798 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
9711818 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:9711822 original size:289 final size:290
Alignment explanation
Indices: 9711312--9712498 Score: 1494
Period size: 297 Copynumber: 4.0 Consensus size: 290
9711302 TATTTTCATA
*
9711312 TATTATTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATGTAAGTA-TTTTTTATATT
1 TATT-TTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTATTTTTTTATATT
9711375 AATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTT-TTTTTTAAATA
65 AATTTAATAAATAACACTGATTTTGACACTTTTT-GTATTTTTTTCGTATCTTATTTTTTAAATA
*
9711439 TATTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTA
129 TATTACTTTCGTA-T-TTTAATTCTTAAAA---TTATTTTAGTACATAATGTTTCAAATATATTA
*
9711503 TTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATA-TTTTTT
189 TTTAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTT
9711567 CGTATATTATTTTTTAAAATATATTATTTTCTTATTT
254 CGTATATTATTTTTTAAAATATATTATTTTCTTATTT
*
9711604 TATTTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATGTAAGTATTTTTTTATATTA
1 TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTATTTTTTTATATTA
9711668 ATTTAATAAATAACACTGATTTTGACACTTTTT-TATTTTTTTCGTATCTT-TTTTTTAAATATA
66 ATTTAATAAATAACACTGATTTTGACACTTTTTGTATTTTTTTCGTATCTTATTTTTTAAATATA
*
9711731 TTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTAC-TAATGTTTTAAATATATTATT
131 TTACTTTCGTA-T-TTTAATTCTTAAAA---TTATTTTAGTACATAATGTTTCAAATATATTATT
*
9711794 TAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATA--TTTTTCG
191 TAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTTCG
* *
9711857 TATATTATTTTTTAAAATATATTACTTTCCTATTT
256 TATATTATTTTTTAAAATATATTATTTTCTTATTT
9711892 TA-TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTT
1 TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATG--TA--A-GT-A---TTTT
* *
9711956 TTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTGTATTTTTTT-GTATCTTATTT
57 TTTATATTAATTTAATAAATAACACTGATTTTGACAC-TTTTTGTATTTTTTTCGTATCTTATTT
* * * * *
9712020 TTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGT
121 TTT-AAATATATTACTTTCGTATTTTAATTCTTAAAATTATTTTAGTACATAATGTTTCAAATAT
** * * *
9712085 ATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGATTTTAGCACTTTATTCGTATT
185 ATTATTT-AAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATT
9712149 TTTTTCGTATATTATTTTTTAAAATATATT-TTTTCTTATTT
249 TTTTTCGTATATTATTTTTTAAAATATATTATTTTCTTATTT
*** * * *
9712190 TA-TTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAAT-TAACTGTTTCTTTATATT
1 TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATT-ATGTAAGTATTTTTTTATATT
* * * * *
9712253 AAGGGTTTTTTACTAAATAACCCTAATTTTGATACTTTCTTCGTAATTTTTTTATTTTCGTATAT
65 AA------TTTAATAAATAACACTGATTTTGACACTTT-TT-GT-A----TTT-TTTTCGTATCT
* * * * * *
9712318 TATTTTTTAATATATAATATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCTTCA
116 TATTTTTTAA-ATATATTACTTTCGTATTTTAATTCTTAAAATTATTTTAGTACATAATGTTTCA
* ** *
9712383 AATGTATTATTTAAGTATTTTTTATA-TTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCG
180 AATATATTATTTAAGTATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCA
**
9712447 TATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTT
245 TATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCTTATTT
9712493 TATTTT
1 TATTTT
9712499 AGCATAAAAT
Statistics
Matches: 818, Mismatches: 37, Indels: 68
0.89 0.04 0.07
Matches are distributed among these distances:
287 19 0.02
288 64 0.08
289 89 0.11
290 74 0.09
291 47 0.06
292 50 0.06
293 3 0.00
294 5 0.01
295 26 0.03
296 16 0.02
297 106 0.13
298 68 0.08
299 52 0.06
300 17 0.02
301 3 0.00
302 78 0.10
303 98 0.12
304 3 0.00
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (290 bp):
TATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTATTTTTTTATATTA
ATTTAATAAATAACACTGATTTTGACACTTTTTGTATTTTTTTCGTATCTTATTTTTTAAATATA
TTACTTTCGTATTTTAATTCTTAAAATTATTTTAGTACATAATGTTTCAAATATATTATTTAAGT
ATTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTTCGTATAT
TATTTTTTAAAATATATTATTTTCTTATTT
Found at i:9712622 original size:30 final size:31
Alignment explanation
Indices: 9712586--9712644 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
9712576 CGTATTTTTT
9712586 TATTTTCAGATTTTATTTTTTTA-ATTATAC
1 TATTTTCAGATTTTATTTTTTTATATTATAC
*
9712616 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAGATTTTATTTTTTTATATTAT
9712645 TTTAACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (31 bp):
TATTTTCAGATTTTATTTTTTTATATTATAC
Found at i:9712821 original size:20 final size:21
Alignment explanation
Indices: 9712793--9712831 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
9712783 CACATAAAAA
9712793 ATAAAAAAT-AAAAAAATTCT
1 ATAAAAAATCAAAAAAATTCT
* *
9712813 ATAATAAATCAAATAAATT
1 ATAAAAAATCAAAAAAATT
9712832 AAAAAATCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAAAAAATCAAAAAAATTCT
Found at i:9713201 original size:8 final size:8
Alignment explanation
Indices: 9713162--9713230 Score: 63
Period size: 8 Copynumber: 8.9 Consensus size: 8
9713152 CGCAGGCCTC
9713162 CTTCTCTT
1 CTTCTCTT
*
9713170 CCTCTCCTT
1 CTTCT-CTT
*
9713179 TTTCT-TT
1 CTTCTCTT
9713186 C-T-TCTT
1 CTTCTCTT
9713192 CTTCTCTT
1 CTTCTCTT
*
9713200 CTTCCCTT
1 CTTCTCTT
*
9713208 CTTCCCTT
1 CTTCTCTT
*
9713216 CTTCCCTT
1 CTTCTCTT
9713224 CTTCTCT
1 CTTCTCT
9713231 CTTTTTCTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
5 1 0.02
6 4 0.08
7 3 0.06
8 37 0.73
9 6 0.12
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (8 bp):
CTTCTCTT
Found at i:9713210 original size:16 final size:16
Alignment explanation
Indices: 9713162--9713230 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 16
9713152 CGCAGGCCTC
*
9713162 CTTCTCTTCCTCTCCTT
1 CTTCTCTTCTTC-CCTT
*
9713179 TTTCT-TTCTT--CTT
1 CTTCTCTTCTTCCCTT
9713192 CTTCTCTTCTTCCCTT
1 CTTCTCTTCTTCCCTT
*
9713208 CTTCCCTTCTTCCCTT
1 CTTCTCTTCTTCCCTT
9713224 CTTCTCT
1 CTTCTCT
9713231 CTTTTTCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
13 7 0.16
14 5 0.11
16 28 0.64
17 4 0.09
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (16 bp):
CTTCTCTTCTTCCCTT
Found at i:9718899 original size:31 final size:32
Alignment explanation
Indices: 9718852--9718927 Score: 136
Period size: 31 Copynumber: 2.4 Consensus size: 32
9718842 ACGTTATTCA
9718852 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
1 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
9718884 TTTTCTTT-TTGCTCTCTGCCACTTTTTCCCT
1 TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
*
9718915 TTCTCTTTCTTGC
1 TTTTCTTTCTTGC
9718928 CGTCGAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
31 30 0.71
32 12 0.29
ACGTcount: A:0.03, C:0.33, G:0.07, T:0.58
Consensus pattern (32 bp):
TTTTCTTTCTTGCTCTCTGCCACTTTTTCCCT
Found at i:9725877 original size:32 final size:32
Alignment explanation
Indices: 9725834--9725912 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
9725824 TCTGAAGTTA
9725834 TTCC-TTTTCTTTCTTGCTCTCTGCCACTTTT
1 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
9725865 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
1 TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
*
9725897 TCCCTTTTTCTTTCTT
1 TTCCTTTTTCTTTCTT
9725913 ACCTCTATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.03, C:0.32, G:0.05, T:0.61
Consensus pattern (32 bp):
TTCCTTTTTCTTTCTTGCTCTCTGCCACTTTT
Found at i:9727249 original size:23 final size:22
Alignment explanation
Indices: 9727201--9727254 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
9727191 TCAAAGGGTT
*
9727201 TTTTTCGAAAGTACGAACTGGA
1 TTTTTCAAAAGTACGAACTGGA
*
9727223 TTTTTCAAAAGTACTAACTGGA
1 TTTTTCAAAAGTACGAACTGGA
9727245 TTTTTCAAAA
1 TTTTTCAAAA
9727255 TATAAGGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (22 bp):
TTTTTCAAAAGTACGAACTGGA
Found at i:9728453 original size:3 final size:3
Alignment explanation
Indices: 9728447--9728511 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
9728437 ATCTAGTTTT
9728447 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9728495 TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
9728512 CAGTTAAATT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9729376 original size:18 final size:19
Alignment explanation
Indices: 9729339--9729386 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
9729329 TTTATAAAGG
*
9729339 TATAAA-ATTTAGAATTTT
1 TATAAATATTTAGAATATT
9729357 TATAAATATTTAGAA-ATT
1 TATAAATATTTAGAATATT
*
9729375 TAAAAATTATTT
1 TATAAA-TATTT
9729387 TGAACTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
TATAAATATTTAGAATATT
Found at i:9729385 original size:19 final size:19
Alignment explanation
Indices: 9729345--9729386 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
9729335 AAGGTATAAA
* *
9729345 ATTTAGAATTTTTATAAAT
1 ATTTAGAATATTTAAAAAT
9729364 ATTTAGAA-ATTTAAAAATT
1 ATTTAGAATATTTAAAAA-T
9729383 ATTT
1 ATTT
9729387 TGAACTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATTTAGAATATTTAAAAAT
Found at i:9730080 original size:16 final size:17
Alignment explanation
Indices: 9730061--9730093 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9730051 TAAATTATAT
9730061 AAAAAT-TAAAAATTAA
1 AAAAATATAAAAATTAA
*
9730077 AAAAATATAAAATTTAA
1 AAAAATATAAAAATTAA
9730094 CAATACATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATATAAAAATTAA
Found at i:9737970 original size:206 final size:205
Alignment explanation
Indices: 9737610--9738017 Score: 636
Period size: 206 Copynumber: 2.0 Consensus size: 205
9737600 GTAATTGTCG
* * * *
9737610 TTGGCGGTAAATGAGTTTCGTATTGTTTTCTTTATACCGAATTTGTTAGTAAATATGTTAAATCG
1 TTGGCGGTAAATGAGTTTCGTATTGTTTCCTTTATACCAAATTTGTTAGTAAACATATTAAATCG
* *
9737675 TTGATGGCTATTCTATTTTTAGGCTTTTGGAAGGCTTAGGATTACGTTAACAGCGAAAATGAACT
66 TTGATGGCTATTCTATTTTTAGGCTTTTGGAAGGCTTAGGATTACGTTAACAACGAAAATGAACC
* * * *
9737740 AGGTATATACCCAAAACGTAAAAATCAAGCTTTCGAAAAAAGTCAAAAAAGGCCACTGTTGATGC
131 AGGTATATACCCAAAACATAAAAATCAAGCTTTC-AAAAAAGTCAAAAAAGGCCACTATCGACGC
9737805 CACACGGGTGA
195 CACACGGGTGA
* * *
9737816 TTGGCGGTAAGTGAGTTTCGTATTGTTTCCTTTATATCAAATTTGTTAGTAAACCTATTAAATCG
1 TTGGCGGTAAATGAGTTTCGTATTGTTTCCTTTATACCAAATTTGTTAGTAAACATATTAAATCG
*
9737881 TTGATGGCTATTCTATTTTTAGGCTTTTGGAAGGCTTAGGATTACGTTAGCAACGAAAATGAACC
66 TTGATGGCTATTCTATTTTTAGGCTTTTGGAAGGCTTAGGATTACGTTAACAACGAAAATGAACC
* * * * *
9737946 AGGTGTGTACCCGAAACATAAAAATCGAGCTTTCAAAAAAGTTAAAAAAGGCCACTATCGACGCC
131 AGGTATATACCCAAAACATAAAAATCAAGCTTTCAAAAAAGTCAAAAAAGGCCACTATCGACGCC
9738011 ACACGGG
196 ACACGGG
9738018 CGTTTGGTCA
Statistics
Matches: 183, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
205 34 0.19
206 149 0.81
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (205 bp):
TTGGCGGTAAATGAGTTTCGTATTGTTTCCTTTATACCAAATTTGTTAGTAAACATATTAAATCG
TTGATGGCTATTCTATTTTTAGGCTTTTGGAAGGCTTAGGATTACGTTAACAACGAAAATGAACC
AGGTATATACCCAAAACATAAAAATCAAGCTTTCAAAAAAGTCAAAAAAGGCCACTATCGACGCC
ACACGGGTGA
Found at i:9738305 original size:31 final size:31
Alignment explanation
Indices: 9738263--9738345 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 31
9738253 GGCGTGTGGA
* *
9738263 CCACATAGGCGTGTGGGCCCACACGGGCACT
1 CCACATGGGCGTGTGGGCCCACACGGGCACG
*
9738294 CCATATGGGCGTGT-GGCCCTACACGGGCACG
1 CCACATGGGCGTGTGGGCCC-ACACGGGCACG
9738325 CCACATGGGCGTGTGGGCCCA
1 CCACATGGGCGTGTGGGCCCA
9738346 TTTAGCTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
30 5 0.11
31 36 0.78
32 5 0.11
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.14
Consensus pattern (31 bp):
CCACATGGGCGTGTGGGCCCACACGGGCACG
Found at i:9743509 original size:41 final size:41
Alignment explanation
Indices: 9743452--9743600 Score: 280
Period size: 41 Copynumber: 3.6 Consensus size: 41
9743442 CATGAGGTAC
*
9743452 CGCTTTTGGTGAAACGCCACTAAAGACCAGAGCATTAGCGG
1 CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
9743493 CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
1 CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
9743534 CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
1 CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
*
9743575 CGCTTTTGGTAAAACGCCGCTAAAGA
1 CGCTTTTGGTGAAACGCCGCTAAAGA
9743601 TACCAACTAG
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (41 bp):
CGCTTTTGGTGAAACGCCGCTAAAGACCAGAGCATTAGCGG
Found at i:9743658 original size:15 final size:14
Alignment explanation
Indices: 9743638--9743672 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
9743628 ACTATTTTAA
*
9743638 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
9743652 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
9743667 GGTTTA
1 GGTTTA
9743673 AAGGTAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:9744426 original size:16 final size:16
Alignment explanation
Indices: 9744405--9744448 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
9744395 AAAAATCTTC
9744405 ATAAAAAATTTAAAAA
1 ATAAAAAATTTAAAAA
9744421 ATAAAAAA--TAAAAA
1 ATAAAAAATTTAAAAA
*
9744435 ACTTAAAAATTTAA
1 A-TAAAAAATTTAA
9744449 TATTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 7 0.29
15 6 0.25
16 8 0.33
17 3 0.12
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (16 bp):
ATAAAAAATTTAAAAA
Found at i:9744469 original size:15 final size:14
Alignment explanation
Indices: 9744440--9744467 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9744430 AAAAAACTTA
9744440 AAAATTTAATATTT
1 AAAATTTAATATTT
9744454 AAAATTTAATATTT
1 AAAATTTAATATTT
9744468 TAGTTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAATTTAATATTT
Found at i:9748247 original size:27 final size:28
Alignment explanation
Indices: 9748212--9748265 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
9748202 TATTTTGATA
9748212 ATGAATTTTA-AACT-TTTTATATTTTTC
1 ATGAATTTTATAA-TATTTTATATTTTTC
* *
9748239 ATGACTTTTATAATATTTTATTTTTTT
1 ATGAATTTTATAATATTTTATATTTTT
9748266 AAATTTTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (28 bp):
ATGAATTTTATAATATTTTATATTTTTC
Found at i:9748342 original size:43 final size:42
Alignment explanation
Indices: 9748278--9748505 Score: 289
Period size: 43 Copynumber: 5.3 Consensus size: 42
9748268 ATTTTATGAC
*** * *
9748278 CTTTAGCGGCGTTTGCGAGAAAAACGTCGCGAAAAGTCTTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAACG-CGCTAAAAGTCCTGGT
*
9748321 CTTTAGCGGCGTTTTTTAGAAAAGCGTCGCTAAAAGTCCTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAACG-CGCTAAAAGTCCTGGT
* * *
9748364 CTTTAGCGGAGTGTTTTTAGAAAAGCGCTGCGAAAAGTCCTGGT
1 CTTTAGCGGCGT-TTTTTAGAAAAACGC-GCTAAAAGTCCTGGT
9748408 CTTTAGCGGCGTTTTTTA-AAAAAGCGCCGCTAAAAGTCCTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAA-CG-CGCTAAAAGTCCTGGT
*
9748451 CTTTAGCGGCGTTTTTTA-AAAAAGCGCGCTAAAAGTCTTGGT
1 CTTTAGCGGCGTTTTTTAGAAAAA-CGCGCTAAAAGTCCTGGT
9748493 CTTTAGCGGCGTT
1 CTTTAGCGGCGTT
9748506 GCATATAGCG
Statistics
Matches: 169, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
42 32 0.19
43 97 0.57
44 40 0.24
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTTTAGAAAAACGCGCTAAAAGTCCTGGT
Found at i:9748400 original size:44 final size:43
Alignment explanation
Indices: 9748309--9748505 Score: 299
Period size: 43 Copynumber: 4.6 Consensus size: 43
9748299 AAACGTCGCG
* *
9748309 AAAAGTCTTGGTCTTTAGCGGCGTTTTTTAGAAAAGCG-TCGCT
1 AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCT-GCT
* * *
9748352 AAAAGTCCTGGTCTTTAGCGGAGTGTTTTTAGAAAAGCGCTGCG
1 AAAAGTCCTGGTCTTTAGCGGCGT-TTTTTAAAAAAGCGCTGCT
*
9748396 AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCT
1 AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCTGCT
9748439 AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGC-GCT
1 AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCTGCT
*
9748481 AAAAGTCTTGGTCTTTAGCGGCGTT
1 AAAAGTCCTGGTCTTTAGCGGCGTT
9748506 GCATATAGCG
Statistics
Matches: 144, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
42 27 0.19
43 77 0.53
44 39 0.27
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
AAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCTGCT
Found at i:9748423 original size:87 final size:85
Alignment explanation
Indices: 9748297--9748505 Score: 330
Period size: 87 Copynumber: 2.4 Consensus size: 85
9748287 CGTTTGCGAG
* *
9748297 AAAAA-CGTCGCGAAAAGTCTTGGTCTTTAGCGGCGTTTTTTAGAAAAGCGTCGCTAAAAGTCCT
1 AAAAAGCG-CGCGAAAAGTCTTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCT
9748361 GGTCTTTAGCGGAGTGTTTTTA
65 GGTCTTTAGCGGAGT-TTTTTA
* *
9748383 GAAAAGCGCTGCGAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCT
1 AAAAAGCGC-GCGAAAAGTCTTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCT
*
9748448 GGTCTTTAGCGGCGTTTTTTA
65 GGTCTTTAGCGGAGTTTTTTA
*
9748469 AAAAAGCGCGCTAAAAGTCTTGGTCTTTAGCGGCGTT
1 AAAAAGCGCGCGAAAAGTCTTGGTCTTTAGCGGCGTT
9748506 GCATATAGCG
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
85 26 0.23
86 19 0.17
87 68 0.60
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (85 bp):
AAAAAGCGCGCGAAAAGTCTTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTG
GTCTTTAGCGGAGTTTTTTA
Found at i:9751202 original size:12 final size:12
Alignment explanation
Indices: 9751168--9751209 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
9751158 TTTTAAAGTA
* *
9751168 TTATCATTATGC
1 TTATAATTATTC
9751180 TTATAATTATTC
1 TTATAATTATTC
*
9751192 TTATAATTATTA
1 TTATAATTATTC
9751204 TTATAA
1 TTATAA
9751210 AAATTATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (12 bp):
TTATAATTATTC
Found at i:9751340 original size:3 final size:3
Alignment explanation
Indices: 9751332--9751366 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9751322 ATCTAGTTTT
9751332 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9751367 CAATTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9751927 original size:32 final size:32
Alignment explanation
Indices: 9751886--9751949 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
9751876 ATCTGTAAAA
9751886 GATGCATGGCCATAACCCTTAAATTCATTATC
1 GATGCATGGCCATAACCCTTAAATTCATTATC
9751918 GATGCATGGCCATAACCCTTAAATTCATTATC
1 GATGCATGGCCATAACCCTTAAATTCATTATC
9751950 TTATAACCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (32 bp):
GATGCATGGCCATAACCCTTAAATTCATTATC
Found at i:9752426 original size:18 final size:18
Alignment explanation
Indices: 9752349--9752436 Score: 61
Period size: 18 Copynumber: 4.8 Consensus size: 18
9752339 TAAAATTATC
* * *
9752349 ATTTTAGAAAAATTTTAA
1 ATTTTATAAATATTTAAA
* *
9752367 ATTTTTTATATATTTAAA
1 ATTTTATAAATATTTAAA
***
9752385 AAAGTATAAA-ATTTATAA
1 ATTTTATAAATATTTA-AA
*
9752403 TTTTTATAAATATTTAAA
1 ATTTTATAAATATTTAAA
*
9752421 ATTTTAAAAATTATTT
1 ATTTTATAAA-TATTT
9752437 TTAACTTTTG
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
17 5 0.10
18 36 0.71
19 10 0.20
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTTTATAAATATTTAAA
Found at i:9763083 original size:39 final size:38
Alignment explanation
Indices: 9763029--9763104 Score: 143
Period size: 39 Copynumber: 2.0 Consensus size: 38
9763019 GGTGATTTCA
9763029 GAAACCAAAATGGAGAATTTATAAAGCGTTTTTCTCTTT
1 GAAACCAAAATGGAGAATTTATAAAGCG-TTTTCTCTTT
9763068 GAAACCAAAATGGAGAATTTATAAAGCGTTTTCTCTT
1 GAAACCAAAATGGAGAATTTATAAAGCGTTTTCTCTT
9763105 ACTTGCAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 9 0.24
39 28 0.76
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (38 bp):
GAAACCAAAATGGAGAATTTATAAAGCGTTTTCTCTTT
Found at i:9765149 original size:21 final size:21
Alignment explanation
Indices: 9765086--9765184 Score: 52
Period size: 21 Copynumber: 4.9 Consensus size: 21
9765076 ATATAAAAAT
*
9765086 AATTATA-TTAAAAATATTATTA
1 AATTATATTTAATAATA--ATTA
** *
9765108 AATTATATATT-ATTTTTATTA
1 AATTATAT-TTAATAATAATTA
9765129 AATTATATTTAATAATAATTA
1 AATTATATTTAATAATAATTA
* *
9765150 TATTA-A---AAT-ATGATTA
1 AATTATATTTAATAATAATTA
9765166 AATTAT-TTATAATAATAAT
1 AATTATATT-TAATAATAAT
9765185 CCTATTAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 19
0.66 0.13 0.22
Matches are distributed among these distances:
16 10 0.18
17 3 0.05
20 6 0.11
21 27 0.47
22 7 0.12
23 2 0.04
24 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
AATTATATTTAATAATAATTA
Found at i:9765150 original size:24 final size:23
Alignment explanation
Indices: 9765086--9765150 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 23
9765076 ATATAAAAAT
*
9765086 AATTATA-TTAAAAATATTATTA
1 AATTATATTTAATAATATTATTA
*
9765108 AATTATATATT-AT--TTTTATTA
1 AATTATAT-TTAATAATATTATTA
9765129 AATTATATTTAATAATAATTAT
1 AATTATATTTAATAAT-ATTAT
9765151 ATTAAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
20 2 0.06
21 17 0.50
22 7 0.21
23 2 0.06
24 6 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATATTTAATAATATTATTA
Found at i:9765166 original size:37 final size:37
Alignment explanation
Indices: 9765125--9765195 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
9765115 TATTATTTTT
*
9765125 ATTAAATTATATT-TAATAATAATTATATTAAAATATG
1 ATTAAATTAT-TTATAATAATAATCATATTAAAATATG
*
9765162 ATTAAATTATTTATAATAATAATCCTATTAAAAT
1 ATTAAATTATTTATAATAATAATCATATTAAAAT
9765196 GTAATAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 29 0.94
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (37 bp):
ATTAAATTATTTATAATAATAATCATATTAAAATATG
Found at i:9769206 original size:4 final size:4
Alignment explanation
Indices: 9769192--9769226 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
9769182 AGTTGAAGTA
*
9769192 TATC AATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TAT
9769227 ATATATGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (4 bp):
TATC
Found at i:9770614 original size:21 final size:20
Alignment explanation
Indices: 9770560--9770614 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
9770550 CCCAAAAAAT
* *
9770560 ATTTAATGTGTATACTTGAA
1 ATTTAATTTGTATACATGAA
*
9770580 ACTCTAA-TTGTATACATGAA
1 A-TTTAATTTGTATACATGAA
9770600 ATTTAATTTGGTATA
1 ATTTAATTT-GTATA
9770615 ATTACACACA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 4 0.14
20 15 0.54
21 9 0.32
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (20 bp):
ATTTAATTTGTATACATGAA
Found at i:9780928 original size:27 final size:27
Alignment explanation
Indices: 9780898--9780953 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
9780888 ACAAGAAATA
* *
9780898 AATTCAAATTGCTACTAACAAGCTAAC
1 AATTCAAACTCCTACTAACAAGCTAAC
***
9780925 AATTCCTCCTCCTACTAACAAGCTAAC
1 AATTCAAACTCCTACTAACAAGCTAAC
9780952 AA
1 AA
9780954 ATCCCTTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.29, G:0.05, T:0.25
Consensus pattern (27 bp):
AATTCAAACTCCTACTAACAAGCTAAC
Found at i:9782816 original size:26 final size:26
Alignment explanation
Indices: 9782787--9782895 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
9782777 TGGTACAAAT
9782787 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
9782813 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9782839 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
9782865 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9782891 TGATA
1 TGATA
9782896 GGCATTTCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9784573 original size:32 final size:27
Alignment explanation
Indices: 9784491--9784576 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
9784481 AGGAAGCGTC
*
9784491 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* *
9784518 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
9784545 CTGGTGGCTCTGCCACA-ATATCGGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
9784572 CTGGT
1 CTGGT
9784577 AACTTCGTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
26 6 0.12
27 44 0.86
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:9784587 original size:54 final size:53
Alignment explanation
Indices: 9784491--9784595 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
9784481 AGGAAGCGTC
* **
9784491 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCGGATCTGGTAACTCTGTCACA-ATATCTGTT
*
9784545 CTGGTGGCTCTGCCACAA-TATCGGTATCTGGTAACT-TCGTCACAATATCTG
1 CTGGTGGCTATGCCACAATTATCGG-ATCTGGTAACTCT-GTCACAATATCTG
9784596 GCAGCCTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCGGATCTGGTAACTCTGTCACAATATCTGTT
Found at i:9786469 original size:36 final size:36
Alignment explanation
Indices: 9786422--9786491 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
9786412 TCATTTATGA
*
9786422 CATTTTTTAATTCACTAAAGTGTATAAAA-TAGTTAC
1 CATTTTTTAATTCACTAAAATGTA-AAAAGTAGTTAC
9786458 CATTTTTTAATTCACTAAAATGTAAAAAGTAGTT
1 CATTTTTTAATTCACTAAAATGTAAAAAGTAGTT
9786492 GCCAATGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 4 0.12
36 28 0.88
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (36 bp):
CATTTTTTAATTCACTAAAATGTAAAAAGTAGTTAC
Found at i:9787686 original size:5 final size:5
Alignment explanation
Indices: 9787673--9787723 Score: 57
Period size: 5 Copynumber: 10.2 Consensus size: 5
9787663 ATGGTAGCAC
* * * * *
9787673 AACAA AACAG AACAA GACAA AACCA AACAA AGCAA AACAA AACAA ATCAA
1 AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA
9787723 A
1 A
9787724 CCAGAGCAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.71, C:0.22, G:0.06, T:0.02
Consensus pattern (5 bp):
AACAA
Found at i:9798052 original size:13 final size:13
Alignment explanation
Indices: 9798034--9798059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9798024 CTCGACAGGA
9798034 ACACGCCCGTGTG
1 ACACGCCCGTGTG
9798047 ACACGCCCGTGTG
1 ACACGCCCGTGTG
9798060 CAATATCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:9799515 original size:15 final size:17
Alignment explanation
Indices: 9799482--9799514 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9799472 GAAAGTAGTT
9799482 TGAAGAGAAGAATCAAAA
1 TGAAGAGAAGAAT-AAAA
9799500 TGAAGAGAA-AATAAA
1 TGAAGAGAAGAATAAA
9799515 TAAATAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 3 0.20
18 9 0.60
ACGTcount: A:0.64, C:0.03, G:0.21, T:0.12
Consensus pattern (17 bp):
TGAAGAGAAGAATAAAA
Found at i:9800598 original size:43 final size:43
Alignment explanation
Indices: 9800551--9800685 Score: 148
Period size: 43 Copynumber: 3.1 Consensus size: 43
9800541 AAAAATACTG
* *
9800551 CTAAAAAACATGACTTTTAGCGGCGCTTTTCTCAAAAATGCTA
1 CTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAAAAATGCCA
* ** *
9800594 CTAAAGAACGTGACTTTTAGCGGTACTTTTCATGC--AAATGCCG
1 CTAAAGAACATGACTTTTAGCGGCGCTTTTC-T-CAAAAATGCCA
* * * *
9800637 CTAAAGAACATGACCTTTAGCAGCGCTCTTCTCAAAAACGCCA
1 CTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAAAAATGCCA
9800680 CTAAAG
1 CTAAAG
9800686 GTCATGTTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 70 0.95
44 1 0.01
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
CTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAAAAATGCCA
Found at i:9801510 original size:13 final size:14
Alignment explanation
Indices: 9801484--9801512 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9801474 ACTAACGATG
9801484 AATTAAACCATTAT
1 AATTAAACCATTAT
9801498 AATTAAA-CATTAT
1 AATTAAACCATTAT
9801511 AA
1 AA
9801513 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:9807132 original size:7 final size:7
Alignment explanation
Indices: 9807056--9807141 Score: 50
Period size: 7 Copynumber: 12.1 Consensus size: 7
9807046 ATGAAAATCA
9807056 TAAACCC
1 TAAACCC
*
9807063 TAACCCC
1 TAAACCC
9807070 TAAACTCC
1 TAAAC-CC
*
9807078 TAAACCT
1 TAAACCC
9807085 TAAACCAC
1 TAAACC-C
*
9807093 -AAATCC
1 TAAACCC
**
9807099 TAAACTA
1 TAAACCC
*
9807106 TAAATCC
1 TAAACCC
*
9807113 TAAATCTC
1 TAAA-CCC
*
9807121 AAAACCC
1 TAAACCC
*
9807128 TAAACTC
1 TAAACCC
9807135 -AAACCC
1 TAAACCC
9807141 T
1 T
9807142 TATTCTATAA
Statistics
Matches: 56, Mismatches: 18, Indels: 10
0.67 0.21 0.12
Matches are distributed among these distances:
6 6 0.11
7 39 0.70
8 11 0.20
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:9807135 original size:14 final size:14
Alignment explanation
Indices: 9807067--9807141 Score: 57
Period size: 14 Copynumber: 5.3 Consensus size: 14
9807057 AAACCCTAAC
*
9807067 CCCTAAACTCCTAAA
1 CCCTAAACT-CAAAA
*
9807082 CCTTAAAC-CACAAA
1 CCCTAAACTCA-AAA
*
9807096 TCCTAAACT-ATAAA
1 CCCTAAACTCA-AAA
*
9807110 TCCTAAATCTCAAAA
1 CCCTAAA-CTCAAAA
9807125 CCCTAAACTC-AAA
1 CCCTAAACTCAAAA
9807138 CCCT
1 CCCT
9807142 TATTCTATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
13 8 0.16
14 23 0.46
15 18 0.36
16 1 0.02
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTAAACTCAAAA
Found at i:9807554 original size:35 final size:35
Alignment explanation
Indices: 9807515--9807583 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 35
9807505 TTTCATATTT
9807515 AAAAAAATACTATATTCAATCCATTATTTCGATTCA
1 AAAAAAAT-CTATATTCAATCCATTATTTCGATTCA
* *
9807551 AAAAAAATCTATATTCAGTCCATTATTTTGATT
1 AAAAAAATCTATATTCAATCCATTATTTCGATT
9807584 TTTAGGATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.39
Consensus pattern (35 bp):
AAAAAAATCTATATTCAATCCATTATTTCGATTCA
Found at i:9808325 original size:115 final size:113
Alignment explanation
Indices: 9808115--9808365 Score: 279
Period size: 115 Copynumber: 2.2 Consensus size: 113
9808105 TTTCGCGGCG
* * * *
9808115 TTTTTGAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAACGTCGCTAAAGCCAC
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGACCCTAAAGCCAC
* * * *
9808180 TAAAGCTCGACATAAAACAAAAGACGTTGTGTTTAATTTTTTTTGCAGCA
66 TAAAGCTCAACATAAAACAAAAGACATTGTGCTTAATTTTTTTCG-A-CA
* * * *** *
9808230 TTTTTCGAAAAGCGCCGCTAATGCTCAATTTATAGCGGTGTTTTTCAAAAAGCACCCTAATGCCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAG-ACCCTAAAGCCA
* * * *
9808295 CTGAAGCTCAACATAAAAC-GATGTCATTGTGCTTAATTTTTTTCGACA
65 CTAAAGCTCAACATAAAACAAAAGACATTGTGCTTAATTTTTTTCGACA
* *
9808343 TTTTTCAAAAAGCACCTCTAATG
1 TTTTTCAAAAAGCGCCGCTAATG
9808366 GTCGACCTAC
Statistics
Matches: 113, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
113 22 0.19
114 1 0.01
115 64 0.57
116 26 0.23
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (113 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGACCCTAAAGCCAC
TAAAGCTCAACATAAAACAAAAGACATTGTGCTTAATTTTTTTCGACA
Done.