Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 390 of 444
Found at i:113112840 original size:54 final size:54
Alignment explanation
Indices: 113112733--113112845 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
113112723 TGGAGGAAGC
* *
113112733 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTAGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
113112787 GTTCTAGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTAGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
113112841 GTTCT
1 GTTCT
113112846 GGCAGCCATG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
GTTCTAGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:113112933 original size:19 final size:22
Alignment explanation
Indices: 113112909--113112948 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
113112899 TTCCCCACAC
113112909 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
113112928 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
113112949 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:113117206 original size:53 final size:54
Alignment explanation
Indices: 113117068--113117241 Score: 178
Period size: 53 Copynumber: 3.3 Consensus size: 54
113117058 TGGACCATGG
* *
113117068 AAACAAGTGATAATCGATAT-TTGTATAAGACCATAGCTGGGCTATGGCATCGGA
1 AAACAAGTGATAAGCGAT-TCCTGTATAAGACCATAGCTGGGCTATGGCATCGGA
* * *
113117122 AAACAAGTGATAAGTGATTCCCGTATAAGACCATAGCTGGGCTATGGCTTC-GA
1 AAACAAGTGATAAGCGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGA
*** * * *
113117175 ATTGAAGTGATACAAGCGA-T-CTGTATAAGACCACAGTTGGGCTATGGCATCAG-
1 AAACAAGTGAT--AAGCGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGA
*
113117228 AGACAAGTGATAAG
1 AAACAAGTGATAAG
113117242 TGCTTTCGTG
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
51 3 0.03
53 46 0.46
54 46 0.46
55 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAACAAGTGATAAGCGATTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGA
Found at i:113118793 original size:19 final size:19
Alignment explanation
Indices: 113118765--113118834 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
113118755 TAGAATTTCT
*
113118765 AAACCATAAAAATTAAATA
1 AAACCCTAAAAATTAAATA
* *
113118784 AAACCCTAAACATGTAATTAA
1 AAACCCTAAAAAT-TAAAT-A
* *
113118805 TAAACACTTAAAAA-CAAATA
1 -AAAC-CCTAAAAATTAAATA
113118825 AAACCCTAAA
1 AAACCCTAAA
113118835 CTTAAACACT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.13
19 15 0.38
20 5 0.13
21 4 0.10
22 4 0.10
23 6 0.15
ACGTcount: A:0.61, C:0.17, G:0.01, T:0.20
Consensus pattern (19 bp):
AAACCCTAAAAATTAAATA
Found at i:113131157 original size:7 final size:7
Alignment explanation
Indices: 113131145--113131225 Score: 108
Period size: 7 Copynumber: 11.4 Consensus size: 7
113131135 AATACCTAGA
113131145 GGTTTAG
1 GGTTTAG
113131152 GGTTTAG
1 GGTTTAG
113131159 GGTTTAG
1 GGTTTAG
113131166 GGTTTTAG
1 GG-TTTAG
113131174 GGTTTAG
1 GGTTTAG
*
113131181 TGTTTAG
1 GGTTTAG
*
113131188 GGTTTAT
1 GGTTTAG
*
113131195 GGTTTAT
1 GGTTTAG
*
113131202 GGTTTAT
1 GGTTTAG
*
113131209 GGTTTAT
1 GGTTTAG
113131216 GGTTTAG
1 GGTTTAG
113131223 GGT
1 GGT
113131226 GAACCTTATG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
7 62 0.90
8 7 0.10
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (7 bp):
GGTTTAG
Found at i:113136684 original size:40 final size:40
Alignment explanation
Indices: 113136590--113136734 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
113136580 TACTCGAATG
* *
113136590 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCT-AGCGACT
* * *
113136631 ACATCTGGACTAAGAT-CCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCAAAGGCATTTGTGCTAGCGACT
* * * *
113136671 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGCGACT
*
113136711 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGTCCCAAAGGC
113136735 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.68
41 26 0.30
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGCGACT
Found at i:113142109 original size:46 final size:46
Alignment explanation
Indices: 113142052--113142218 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
113142042 ACACACCGTA
113142052 GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACACTGAT
1 GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACACTGAT
* ** * * *
113142098 GCCATATCCCAGATATGGTCTTATACGGAAGCACGTAATCACATATCTCTGAT
1 GCCATAGCCCAGCCATGGTCTTACAC-GAATCACAT-ATCAC--A---CTGAT
* *
113142151 GCCATAGCCCAGCTATGGTCTTACAC-AGATCACATATCACATTGAT
1 GCCATAGCCCAGCCATGGTCTTACACGA-ATCACATATCACACTGAT
* * *
113142197 GCCATGGTCCAACCATGGTCTT
1 GCCATAGCCCAGCCATGGTCTT
113142219 TTCCGTCAAT
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
46 44 0.45
47 7 0.07
48 5 0.05
49 1 0.01
50 1 0.01
51 6 0.06
52 5 0.05
53 28 0.29
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (46 bp):
GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACACTGAT
Found at i:113143384 original size:23 final size:22
Alignment explanation
Indices: 113143283--113143388 Score: 114
Period size: 21 Copynumber: 5.0 Consensus size: 22
113143273 CCTGATCAGT
*
113143283 ATACGACACATAA-GTGCCTGA
1 ATACGACACACAAGGTGCCTGA
* *
113143304 A-AC-ACACACGAGGTGTCTGA
1 ATACGACACACAAGGTGCCTGA
*
113143324 A-ACGACACACGAGGTGCCTG-
1 ATACGACACACAAGGTGCCTGA
113143344 ATACGACACACAAGGTGCCTGAA
1 ATACGACACACAAGGTGCCTG-A
* *
113143367 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAGGTGCCTGA
113143389 TCAGTATAGC
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.08
20 13 0.18
21 34 0.47
22 1 0.01
23 19 0.26
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTGA
Found at i:113143385 original size:44 final size:41
Alignment explanation
Indices: 113143283--113143389 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 41
113143273 CCTGATCAGT
* * *
113143283 ATACGACACATAAGTGCCTGAAACACACACGAGGTGTCTGA
1 ATACGACACATAAGTGCCTGATACACACACAAGGTGCCTGA
* *
113143324 A-ACGACACACGAGGTGCCTGATACGACACACAAGGTGCCTGAA
1 ATACGACACA-TAAGTGCCTGATAC-ACACACAAGGTGCCTG-A
113143367 ATACGACACATAAAGTGCCTGAT
1 ATACGACACAT-AAGTGCCTGAT
113143390 CAGTATAGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
40 8 0.15
41 12 0.22
42 14 0.26
43 2 0.04
44 18 0.33
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTGATACACACACAAGGTGCCTGA
Found at i:113143605 original size:23 final size:24
Alignment explanation
Indices: 113143579--113143673 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
113143569 AAATGTCCAA
113143579 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
113143602 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
113143630 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
113143659 CCAAAACACACCAGA
1 CCAAAACACACCAGA
113143674 ATAGCACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:113143675 original size:29 final size:28
Alignment explanation
Indices: 113143593--113143676 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
113143583 AACACACCAG
* *
113143593 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
113143621 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
113143649 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
113143677 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:113147207 original size:31 final size:33
Alignment explanation
Indices: 113147147--113147222 Score: 104
Period size: 31 Copynumber: 2.4 Consensus size: 33
113147137 ATATATATTT
113147147 ATTATTAAAATATTAATATAATTTTTAAAATAA
1 ATTATTAAAATATTAATATAATTTTTAAAATAA
**
113147180 ATTATTAAGAATATT-A-ATAA-TTTTAAAATTT
1 ATTATTAA-AATATTAATATAATTTTTAAAATAA
113147211 ATTATTAAAATA
1 ATTATTAAAATA
113147223 CAATTTTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
30 4 0.10
31 17 0.43
32 4 0.10
33 9 0.22
34 6 0.15
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (33 bp):
ATTATTAAAATATTAATATAATTTTTAAAATAA
Found at i:113156440 original size:38 final size:38
Alignment explanation
Indices: 113156380--113156650 Score: 389
Period size: 38 Copynumber: 7.1 Consensus size: 38
113156370 ATATTTGATG
* *
113156380 TATATCCGGGTTAAATCTCGCAGGCTTCTTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
** **
113156418 TATATCCGAATTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
113156456 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
**
113156494 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* ** *
113156532 TATATCCAGGTTTTATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
113156570 TATATCCGGGTTAAATCTCGCAGGTTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
113156608 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
113156646 TATAT
1 TATAT
113156651 TCGAGCTTAA
Statistics
Matches: 208, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 208 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:113157530 original size:2 final size:2
Alignment explanation
Indices: 113157523--113157550 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
113157513 TGAAAATGTG
113157523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113157551 TCATTGATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113161025 original size:18 final size:18
Alignment explanation
Indices: 113161002--113161039 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
113160992 ATTGTTTTCT
**
113161002 TTTCTTTTCTTTTTAAAA
1 TTTCTTTTCTCCTTAAAA
113161020 TTTCTTTTCTCCTTAAAA
1 TTTCTTTTCTCCTTAAAA
113161038 TT
1 TT
113161040 CCCCAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTCTTTTCTCCTTAAAA
Found at i:113171717 original size:15 final size:15
Alignment explanation
Indices: 113171697--113171727 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
113171687 AGTTTGAGGT
*
113171697 GAAGATCAAGATAAA
1 GAAGATAAAGATAAA
113171712 GAAGATAAAGATAAA
1 GAAGATAAAGATAAA
113171727 G
1 G
113171728 TAGTGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.03, G:0.23, T:0.13
Consensus pattern (15 bp):
GAAGATAAAGATAAA
Found at i:113172933 original size:41 final size:42
Alignment explanation
Indices: 113172876--113172957 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 42
113172866 TATCACAATT
* *
113172876 CTCACAAAAGCCCATGCTTTCAAA-GAGCATGCAGAGTGAGG
1 CTCACAAAAGCCCATGCTCTCAAAGGAACATGCAGAGTGAGG
* *
113172917 CTCACAAAAGCTCATGCTCTCAAAGGAACATGTAGAGTGAG
1 CTCACAAAAGCCCATGCTCTCAAAGGAACATGCAGAGTGAG
113172958 ACTTAACATG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 22 0.61
42 14 0.39
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (42 bp):
CTCACAAAAGCCCATGCTCTCAAAGGAACATGCAGAGTGAGG
Found at i:113173126 original size:28 final size:27
Alignment explanation
Indices: 113173076--113173154 Score: 68
Period size: 28 Copynumber: 2.9 Consensus size: 27
113173066 CACAAAGCAG
* * **
113173076 AGCCAAACAAAGAGTTCGTACAAAAGA
1 AGCCAAACAGAGAGCTCACACAAAAGA
*
113173103 ATGCCAAACAGAGAGCTCACACAAAATA
1 A-GCCAAACAGAGAGCTCACACAAAAGA
* ** *
113173131 AACTTAGCAGAGAGCTCACACAAA
1 AGCCAAACAGAGAGCTCACACAAA
113173155 GCAAAACTAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 20 0.48
28 22 0.52
ACGTcount: A:0.49, C:0.23, G:0.16, T:0.11
Consensus pattern (27 bp):
AGCCAAACAGAGAGCTCACACAAAAGA
Found at i:113175453 original size:17 final size:19
Alignment explanation
Indices: 113175431--113175468 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
113175421 CCAAATTTCT
113175431 AACCTTAAA-CC-TTAAAA
1 AACCTTAAACCCTTTAAAA
113175448 AACCTTAAACCCTTTAAAA
1 AACCTTAAACCCTTTAAAA
113175467 AA
1 AA
113175469 GGTTGAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 2 0.11
19 8 0.42
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (19 bp):
AACCTTAAACCCTTTAAAA
Found at i:113176168 original size:31 final size:32
Alignment explanation
Indices: 113176130--113176192 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
113176120 TTAATTAGTT
* *
113176130 TGAGTTATCAAATT-AATTAATTAATTAATAA
1 TGAGTTATCAAATTCAAGTAATAAATTAATAA
* *
113176161 TGAGTTATTAAATTCAAGTAATAAATTTATAA
1 TGAGTTATCAAATTCAAGTAATAAATTAATAA
113176193 GTTTATAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (32 bp):
TGAGTTATCAAATTCAAGTAATAAATTAATAA
Found at i:113179092 original size:16 final size:16
Alignment explanation
Indices: 113179068--113179108 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
113179058 CAAAAATTGT
*
113179068 AAAAA-TGACCCATAA
1 AAAAATTGACCCACAA
113179083 AAAAATTGACCCACAA
1 AAAAATTGACCCACAA
*
113179099 AAAATTTGAC
1 AAAAATTGAC
113179109 TCACCGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17
Consensus pattern (16 bp):
AAAAATTGACCCACAA
Found at i:113181569 original size:20 final size:21
Alignment explanation
Indices: 113181526--113181572 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
113181516 TGTTTATTAT
*
113181526 AATTTTTTTAGTTTGATTTTA
1 AATTTTTTTAGTTTGATTTAA
*
113181547 AATTTTTTTAGTTT-CTTTAA
1 AATTTTTTTAGTTTGATTTAA
113181567 AATTTT
1 AATTTT
113181573 AAATTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (21 bp):
AATTTTTTTAGTTTGATTTAA
Found at i:113183250 original size:26 final size:26
Alignment explanation
Indices: 113183211--113183372 Score: 243
Period size: 26 Copynumber: 6.2 Consensus size: 26
113183201 TGATACAAAT
*
113183211 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTCCA
*
113183237 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
113183263 TGACAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
113183289 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
113183315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
113183341 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
113183367 TGATAA
1 TGATAA
113183373 GAATTTCATG
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 125 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:113183305 original size:78 final size:78
Alignment explanation
Indices: 113183211--113183372 Score: 279
Period size: 78 Copynumber: 2.1 Consensus size: 78
113183201 TGATACAAAT
*
113183211 TGATAATAGGTTAGGTAAATGTTCCTTGATAATAGATTAGGTAAATGTTCCATGACAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGACAATGGGTTA
113183276 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* * * *
113183289 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGACAATGGGTTA
113183354 GGTAAATGTTTCA
66 GGTAAATGTTTCA
113183367 TGATAA
1 TGATAA
113183373 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATGTTCCATGACAATGGGTTA
GGTAAATGTTTCA
Found at i:113185027 original size:27 final size:27
Alignment explanation
Indices: 113184986--113185098 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
113184976 GAGGAAGCGT
*
113184986 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
113185013 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
113185040 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
113185068 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
113185094 TCTGG
1 TCTGG
113185099 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:113185091 original size:54 final size:54
Alignment explanation
Indices: 113184984--113185098 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
113184974 TGGAGGAAGC
*
113184984 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
113185038 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
113185092 GTTCTGG
1 GTTCTGG
113185099 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:113189077 original size:26 final size:26
Alignment explanation
Indices: 113189041--113189150 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
113189031 TGATACAAAT
113189041 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
113189067 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
113189093 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
113189119 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
113189145 TGATAA
1 TGATAA
113189151 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:113190809 original size:27 final size:27
Alignment explanation
Indices: 113190768--113190880 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
113190758 GAGGAAGCGT
*
113190768 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
113190795 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
113190822 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
113190850 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
113190876 TCTGG
1 TCTGG
113190881 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:113190873 original size:54 final size:54
Alignment explanation
Indices: 113190766--113190880 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
113190756 TGGAGGAAGC
*
113190766 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
113190820 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
113190874 GTTCTGG
1 GTTCTGG
113190881 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:113192659 original size:2 final size:2
Alignment explanation
Indices: 113192652--113192689 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
113192642 GGGTAATCTA
113192652 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
113192690 AGGTTCTCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113193962 original size:23 final size:22
Alignment explanation
Indices: 113193912--113193962 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
113193902 ATTTTTTAAA
*
113193912 AATTTTAATAAATAAATAAAAC
1 AATTTTAATAAATAAACAAAAC
* *
113193934 ATATTTTAATAAATATACACAACC
1 A-ATTTTAATAAATAAACA-AAAC
113193958 AATTT
1 AATTT
113193963 GTGTGATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 19 0.79
24 4 0.17
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (22 bp):
AATTTTAATAAATAAACAAAAC
Found at i:113196786 original size:21 final size:21
Alignment explanation
Indices: 113196760--113196800 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
113196750 AGGAGGAAGT
113196760 ACTGATAGTTTATCAACAAAC
1 ACTGATAGTTTATCAACAAAC
* *
113196781 ACTGATGGTTTATCCACAAA
1 ACTGATAGTTTATCAACAAA
113196801 TTTATTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (21 bp):
ACTGATAGTTTATCAACAAAC
Found at i:113204792 original size:16 final size:15
Alignment explanation
Indices: 113204765--113204794 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
113204755 ATATTCACAT
113204765 TTATACTATATATAA
1 TTATACTATATATAA
113204780 TTATACATATATATA
1 TTATAC-TATATATA
113204795 TATTCAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATACTATATATAA
Found at i:113217433 original size:19 final size:19
Alignment explanation
Indices: 113217406--113217445 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
113217396 TTTAATTAGA
*
113217406 AATGTTTATGGATGATAAT
1 AATGATTATGGATGATAAT
*
113217425 AATGATTATGTATGATAAT
1 AATGATTATGGATGATAAT
113217444 AA
1 AA
113217446 AATTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (19 bp):
AATGATTATGGATGATAAT
Found at i:113217452 original size:19 final size:20
Alignment explanation
Indices: 113217410--113217452 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
113217400 ATTAGAAATG
*
113217410 TTTATGGATGATAATAATGA
1 TTTATGGATGATAATAATAA
*
113217430 -TTATGTATGATAATAA-AA
1 TTTATGGATGATAATAATAA
113217448 TTTAT
1 TTTAT
113217453 TATTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (20 bp):
TTTATGGATGATAATAATAA
Found at i:113218464 original size:26 final size:25
Alignment explanation
Indices: 113218426--113218476 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
113218416 AATTTAGGTC
*
113218426 TAATTATAATATTTTTAAATTCAAAT
1 TAATTACAATATTTTTAAATT-AAAT
*
113218452 TAATTACATTATTTTTAAATTAAAT
1 TAATTACAATATTTTTAAATTAAAT
113218477 GGTTATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
TAATTACAATATTTTTAAATTAAAT
Found at i:113218907 original size:29 final size:31
Alignment explanation
Indices: 113218840--113218909 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 31
113218830 AAAATCAAAA
113218840 TAACACATAAATTTTATACTTATGTGTAATT
1 TAACACATAAATTTTATACTTATGTGTAATT
*
113218871 TAATACATAAATTTTA-A-TT-TGGTGTAA-T
1 TAACACATAAATTTTATACTTAT-GTGTAATT
113218899 TATACACATAA
1 TA-ACACATAA
113218910 TACATTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 4 0.11
29 15 0.43
30 1 0.03
31 15 0.43
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (31 bp):
TAACACATAAATTTTATACTTATGTGTAATT
Found at i:113223919 original size:24 final size:24
Alignment explanation
Indices: 113223892--113223938 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
113223882 AATGCACGAT
113223892 AATAATTCC-ATTTTAACTCCAATA
1 AATAATTCCTATTTTAAC-CCAATA
* *
113223916 AATACTTCCTGTTTTAACCCAAT
1 AATAATTCCTATTTTAACCCAAT
113223939 TTTTGTTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.38
Consensus pattern (24 bp):
AATAATTCCTATTTTAACCCAATA
Found at i:113228734 original size:37 final size:37
Alignment explanation
Indices: 113228692--113228762 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
113228682 TTACAAATGT
113228692 ATTTAAAAATAA-TATACAATAA-ATAATAAAATATATG
1 ATTTAAAAATAATTA-ACAATAACAT-ATAAAATATATG
* *
113228729 ATTTAAAATTAATTAATAATAACATATAAAATAT
1 ATTTAAAAATAATTAACAATAACATATAAAATAT
113228763 GAACGATGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 26 0.87
38 4 0.13
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (37 bp):
ATTTAAAAATAATTAACAATAACATATAAAATATATG
Found at i:113235798 original size:21 final size:22
Alignment explanation
Indices: 113235772--113235822 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
113235762 CCTCTAGGAT
**
113235772 GGGCGTGTCCC-AAGGTCACAC
1 GGGCGTGTCCCTAAGACCACAC
*
113235793 GGGCGTGTCCCTTAGACCACAC
1 GGGCGTGTCCCTAAGACCACAC
113235815 GGGCGTGT
1 GGGCGTGT
113235823 GAGCCCTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (22 bp):
GGGCGTGTCCCTAAGACCACAC
Found at i:113242757 original size:17 final size:18
Alignment explanation
Indices: 113242715--113242763 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
113242705 AGTTGAAAAG
113242715 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
113242734 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
113242751 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
113242764 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:113243651 original size:40 final size:40
Alignment explanation
Indices: 113243585--113243751 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
113243575 AAATTGAATG
* * *
113243585 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
113243624 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
113243664 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
113243704 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
113243744 ATATCCGG
1 ATATCCGG
113243752 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:113250764 original size:17 final size:18
Alignment explanation
Indices: 113250722--113250770 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
113250712 AGTTGAAAAG
113250722 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
113250741 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
113250758 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
113250771 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:113251655 original size:40 final size:40
Alignment explanation
Indices: 113251589--113251755 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
113251579 AAATTGAATG
* * *
113251589 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
113251628 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
113251668 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
113251708 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
113251748 ATATCCGG
1 ATATCCGG
113251756 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:113253046 original size:1 final size:1
Alignment explanation
Indices: 113253040--113253075 Score: 72
Period size: 1 Copynumber: 36.0 Consensus size: 1
113253030 ATTGGTGGGC
113253040 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
113253076 CATGTGAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:113253254 original size:22 final size:22
Alignment explanation
Indices: 113253229--113253273 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
113253219 AACTACATTG
*
113253229 AGAAAGTATTGAAAAAGTTCAA
1 AGAAAGTAATGAAAAAGTTCAA
113253251 AGAAAGTAATGAAAAAGTTCAA
1 AGAAAGTAATGAAAAAGTTCAA
113253273 A
1 A
113253274 CACTTGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.18, T:0.20
Consensus pattern (22 bp):
AGAAAGTAATGAAAAAGTTCAA
Found at i:113255202 original size:14 final size:14
Alignment explanation
Indices: 113255166--113255204 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
113255156 TTGTTTTACT
*
113255166 GAAAATGACTTCCG
1 GAAAATGATTTCCG
* *
113255180 AAAAATGATTTCTG
1 GAAAATGATTTCCG
113255194 GAAAATGATTT
1 GAAAATGATTT
113255205 ACTTTTTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:113255838 original size:22 final size:22
Alignment explanation
Indices: 113255798--113255853 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
113255788 AATAAAATTG
*
113255798 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
113255818 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
113255840 TATTAATAATTTAT
1 AAATAATAAATTAT
113255854 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:113268821 original size:23 final size:25
Alignment explanation
Indices: 113268795--113268841 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
113268785 TATCATTCAT
*
113268795 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
113268818 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
113268842 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:113269279 original size:46 final size:46
Alignment explanation
Indices: 113269102--113269282 Score: 229
Period size: 46 Copynumber: 3.9 Consensus size: 46
113269092 TTTGACGTGA
* * * * * *
113269102 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGT
** * * *
113269148 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* *
113269194 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
113269240 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
113269283 AAGAGCACAC
Statistics
Matches: 119, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 3 0.03
46 116 0.97
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:113274063 original size:23 final size:25
Alignment explanation
Indices: 113274037--113274083 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
113274027 TATCATTCAT
*
113274037 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
113274060 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
113274084 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:113274244 original size:13 final size:13
Alignment explanation
Indices: 113274226--113274255 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
113274216 TTCTTGTAAA
113274226 CATTTCATACAAC
1 CATTTCATACAAC
*
113274239 CATTTCATATAAC
1 CATTTCATACAAC
113274252 CATT
1 CATT
113274256 CGTCATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (13 bp):
CATTTCATACAAC
Found at i:113274521 original size:46 final size:46
Alignment explanation
Indices: 113274344--113274525 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
113274334 TTTGACGTGA
* * * * * *
113274344 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
113274390 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
113274436 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
113274482 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
113274526 AGAGCACACT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 118 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:113278008 original size:21 final size:21
Alignment explanation
Indices: 113277984--113278053 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
113277974 CTCTTTCGAA
113277984 CTTCTATTCAGCTCTTATGAG
1 CTTCTATTCAGCTCTTATGAG
* *
113278005 CTTCTGTTCAACTCTTATGAG
1 CTTCTATTCAGCTCTTATGAG
* * *
113278026 TTTCTGTTTAGCTCTTATGAG
1 CTTCTATTCAGCTCTTATGAG
113278047 CTTCTAT
1 CTTCTAT
113278054 AAAACTCTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.47
Consensus pattern (21 bp):
CTTCTATTCAGCTCTTATGAG
Found at i:113278039 original size:42 final size:42
Alignment explanation
Indices: 113277993--113278080 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
113277983 ACTTCTATTC
* ** *
113277993 AGCTCTTATGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTT
1 AGCTCTTATGAGCTTCTATAAAACTCTTATAAGTTTCTGTTT
113278035 AGCTCTTATGAGCTTCTATAAAACTCTTATAAGTTTCTGTTT
1 AGCTCTTATGAGCTTCTATAAAACTCTTATAAGTTTCTGTTT
113278077 AGCT
1 AGCT
113278081 TGGAGCTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCTATAAAACTCTTATAAGTTTCTGTTT
Found at i:113278061 original size:21 final size:21
Alignment explanation
Indices: 113277995--113278075 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 21
113277985 TTCTATTCAG
*
113277995 CTCTTATGAGCTTCTGTTCAA
1 CTCTTATGAGCTTCTGTTAAA
* * *
113278016 CTCTTATGAGTTTCTGTTTAG
1 CTCTTATGAGCTTCTGTTAAA
* *
113278037 CTCTTATGAGCTTCTATAAAA
1 CTCTTATGAGCTTCTGTTAAA
* *
113278058 CTCTTATAAGTTTCTGTT
1 CTCTTATGAGCTTCTGTT
113278076 TAGCTTGGAG
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (21 bp):
CTCTTATGAGCTTCTGTTAAA
Found at i:113286935 original size:29 final size:29
Alignment explanation
Indices: 113286841--113286913 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
113286831 GTGACGAGAT
113286841 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
113286870 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
113286899 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
113286914 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:113287009 original size:2 final size:2
Alignment explanation
Indices: 113287004--113287036 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
113286994 GTGTGCGTAC
113287004 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
113287037 CTCCGATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:113302457 original size:19 final size:20
Alignment explanation
Indices: 113302408--113302457 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
113302398 ACTCAAGTAT
* *
113302408 AAAAGGAAAAAGGGGAACTA
1 AAAAGGAGAAAGGGGAACGA
*
113302428 AAAAGTG-GAAAGGTGAA-GA
1 AAAAG-GAGAAAGGGGAACGA
113302447 AAAAGGAGAAA
1 AAAAGGAGAAA
113302458 ATTTGTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 1 0.04
19 10 0.40
20 13 0.52
21 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.32, T:0.06
Consensus pattern (20 bp):
AAAAGGAGAAAGGGGAACGA
Found at i:113304930 original size:42 final size:43
Alignment explanation
Indices: 113304795--113304965 Score: 172
Period size: 42 Copynumber: 4.0 Consensus size: 43
113304785 ACATAGGATC
* * *
113304795 CGATATGTG-TTATCGTGTAAGACCACGTATGGGAC-GTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCATGTCTGGGACAG-TGGCAT
* * *
113304838 CGATCTGTGAGTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATTTGA-TTACGTGTAAGACCATGTCTGGGACAGTGGCAT
*
113304882 CG-TATTTGATTTCGTGTAAGACC-TGTCTGGGACAGTGGCAT
1 CGATATTTGATTACGTGTAAGACCATGTCTGGGACAGTGGCAT
* * * *
113304923 CGATATTTGATTACATGTAAGGCCATCTATGGGAC-GTTGGCAT
1 CGATATTTGATTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
113304966 TGTACGTGCT
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
41 19 0.17
42 32 0.29
43 27 0.25
44 28 0.26
45 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:113318711 original size:20 final size:20
Alignment explanation
Indices: 113318686--113318725 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
113318676 TGGATAGAAG
113318686 TATGAGTATGAAAGACATCA
1 TATGAGTATGAAAGACATCA
113318706 TATGAGTATGAAAGACATCA
1 TATGAGTATGAAAGACATCA
113318726 CAAAATGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (20 bp):
TATGAGTATGAAAGACATCA
Found at i:113321965 original size:3 final size:3
Alignment explanation
Indices: 113321957--113322031 Score: 98
Period size: 3 Copynumber: 25.3 Consensus size: 3
113321947 AGTAGATTTA
* * * * *
113321957 ATT ATT ATT AGT AGT AGT ATT ATT ATA ACT A-T ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
113322004 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
113322032 AATAAATTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.03
3 64 0.97
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:113322156 original size:7 final size:7
Alignment explanation
Indices: 113322144--113322171 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
113322134 AAGAATAAGA
113322144 TATTTAT
1 TATTTAT
113322151 TATTTAT
1 TATTTAT
113322158 TATTTAT
1 TATTTAT
113322165 TATTTAT
1 TATTTAT
113322172 CATTAGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATTTAT
Found at i:113324196 original size:19 final size:17
Alignment explanation
Indices: 113324163--113324198 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
113324153 AGGTTTAATT
113324163 AAAAAAATAATAATGAA
1 AAAAAAATAATAATGAA
113324180 AAAAAAATGAATGAATGAA
1 AAAAAAAT-AAT-AATGAA
113324199 GTCAATTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (17 bp):
AAAAAAATAATAATGAA
Found at i:113330976 original size:29 final size:31
Alignment explanation
Indices: 113330932--113331062 Score: 97
Period size: 31 Copynumber: 4.3 Consensus size: 31
113330922 ATTGATAATT
*
113330932 CAAGTACCACATTGGACACTTT-T-AAAGTA
1 CAAGTACCACAATGGACACTTTATGAAAGTA
* * *
113330961 CAAGTATCACAATGGATATTTTATGAAAGTA
1 CAAGTACCACAATGGACACTTTATGAAAGTA
* ** * * *
113330992 CAAGTACTACAATAAACA-TATATTGATAGTT
1 CAAGTACCACAATGGACACTTTA-TGAAAGTA
* * * * *
113331023 CAGGTACCACATTAGACATTTTATGAAAATA
1 CAAGTACCACAATGGACACTTTATGAAAGTA
113331054 CAAGTACCA
1 CAAGTACCA
113331063 AATATGACAT
Statistics
Matches: 77, Mismatches: 21, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
29 18 0.23
30 4 0.05
31 52 0.68
32 3 0.04
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (31 bp):
CAAGTACCACAATGGACACTTTATGAAAGTA
Found at i:113332367 original size:114 final size:115
Alignment explanation
Indices: 113332243--113332457 Score: 299
Period size: 114 Copynumber: 1.9 Consensus size: 115
113332233 AGTATATGGG
*** * * **
113332243 GCAAAATGCAATCTTTTTCCTTCTACAAGGGTCTCCATGGTACTTTTT-CCGCCTTCATACATGC
1 GCAAAATGCAATCTAACTCCTTATACAAGGGTCTCCATAGTA-TTTTTACCGCCTTCATACACAC
* *
113332307 ATAAAATGGAAGGAAG-AAGGATGGACTTTGAATATTTTTGAGTAAATGAA
65 ATAAAATGAAAGGAAGAAAGGATAGACTTTGAATATTTTTGAGTAAATGAA
* * *
113332357 GCAAAGTGCAATCTAACTCTTTATACAAGGGTCTCCATAGTATTTTTACTGCCTTCATACACACA
1 GCAAAATGCAATCTAACTCCTTATACAAGGGTCTCCATAGTATTTTTACCGCCTTCATACACACA
113332422 TAAAATGAAAGGAAGAAAGGATAGACTTTGAATATT
66 TAAAATGAAAGGAAGAAAGGATAGACTTTGAATATT
113332458 GAATTTATTT
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
113 5 0.06
114 63 0.72
115 19 0.22
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (115 bp):
GCAAAATGCAATCTAACTCCTTATACAAGGGTCTCCATAGTATTTTTACCGCCTTCATACACACA
TAAAATGAAAGGAAGAAAGGATAGACTTTGAATATTTTTGAGTAAATGAA
Found at i:113332867 original size:17 final size:17
Alignment explanation
Indices: 113332845--113332877 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
113332835 GAGGAGTTAT
113332845 TTAGAATATT-TAATAAC
1 TTAGAAT-TTGTAATAAC
113332862 TTAGAATTTGTAATAA
1 TTAGAATTTGTAATAA
113332878 AGGTGTCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (17 bp):
TTAGAATTTGTAATAAC
Found at i:113334324 original size:20 final size:20
Alignment explanation
Indices: 113334301--113334339 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
113334291 CAAATTCTAT
113334301 AAAAAATAGAAAAATTAAAG
1 AAAAAATAGAAAAATTAAAG
** *
113334321 AAAAGTTATAAAAATTAAA
1 AAAAAATAGAAAAATTAAA
113334340 AATTATAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAAAATAGAAAAATTAAAG
Found at i:113334924 original size:23 final size:22
Alignment explanation
Indices: 113334897--113334943 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
113334887 TTTCAATAAA
*
113334897 TTTTCTATAAAAATTTATAATAT
1 TTTTCTA-AAAAATTTATAACAT
113334920 TTTTCTAAAAAATTTATAACAT
1 TTTTCTAAAAAATTTATAACAT
113334942 TT
1 TT
113334944 AAAATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTCTAAAAAATTTATAACAT
Found at i:113344060 original size:21 final size:20
Alignment explanation
Indices: 113344019--113344060 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
113344009 ATAATTTTTA
*
113344019 TTTTTAAATATGAATTTTGG
1 TTTTTAAATATGAATTATGG
113344039 TTTTATAAA-ATGAGATTATGG
1 TTTT-TAAATATGA-ATTATGG
113344060 T
1 T
113344061 GTGTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (20 bp):
TTTTTAAATATGAATTATGG
Found at i:113347393 original size:21 final size:23
Alignment explanation
Indices: 113347369--113347411 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
113347359 TCGACACCAC
113347369 ATTA-AATTTC-TCATACATAGT
1 ATTATAATTTCATCATACATAGT
*
113347390 ATTATTATTTTCATCATACATA
1 ATTA-TAATTTCATCATACATA
113347412 CATAGATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
23 5 0.28
24 9 0.50
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATAATTTCATCATACATAGT
Found at i:113353016 original size:45 final size:45
Alignment explanation
Indices: 113352851--113353009 Score: 201
Period size: 45 Copynumber: 3.5 Consensus size: 45
113352841 ATACGCCAAG
*
113352851 ATGAGTAAGACCATAGCTGAAAGATGCTATGACGTCATGATAAAA
1 ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAAAA
*** * **
113352896 ATGAGTAAGACCATAGCTGAAAGACAATATGGCATCATGACGAAA
1 ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAAAA
* * *
113352941 ATGAGTAAAACCATAACTGAAAGATGCTATGACATCATGGTAAAA
1 ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAAAA
* * *
113352986 AGGACTAAGACAATAGCTGAAAGA
1 ATGAGTAAGACCATAGCTGAAAGA
113353010 CTCTATGGAA
Statistics
Matches: 93, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (45 bp):
ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAAAA
Found at i:113355858 original size:18 final size:19
Alignment explanation
Indices: 113355820--113355864 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
113355810 AATCCTAAAT
113355820 ACCATTTAATTTCATACCTAA
1 ACCA-TTAATTTCA-ACCTAA
113355841 ACCATTAATTTC-ACCTAA
1 ACCATTAATTTCAACCTAA
113355859 ATCCAT
1 A-CCAT
113355865 GATCCTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.30
19 4 0.17
20 8 0.35
21 4 0.17
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.36
Consensus pattern (19 bp):
ACCATTAATTTCAACCTAA
Found at i:113357178 original size:16 final size:16
Alignment explanation
Indices: 113357157--113357196 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
113357147 TTTAGTTACT
113357157 TGGGTTTCTAGATACA
1 TGGGTTTCTAGATACA
* *
113357173 TGGGTTACTAGATGCA
1 TGGGTTTCTAGATACA
113357189 TGGGTTTC
1 TGGGTTTC
113357197 GTAACCCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.20, C:0.12, G:0.30, T:0.38
Consensus pattern (16 bp):
TGGGTTTCTAGATACA
Found at i:113361860 original size:17 final size:18
Alignment explanation
Indices: 113361834--113361874 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
113361824 CTCAATTAAG
113361834 ATAA-TTTTCTA-A-ATT
1 ATAATTTTTCTAGACATT
113361849 AATAATTTTTCTAGACATT
1 -ATAATTTTTCTAGACATT
113361868 ATAATTT
1 ATAATTT
113361875 ATTTCATAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.18
17 7 0.32
18 8 0.36
19 3 0.14
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.51
Consensus pattern (18 bp):
ATAATTTTTCTAGACATT
Found at i:113370569 original size:34 final size:34
Alignment explanation
Indices: 113370526--113370594 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
113370516 ATAATACATC
113370526 TCAATTACGTACTTATTGTTTCATTCCCTTTTCT
1 TCAATTACGTACTTATTGTTTCATTCCCTTTTCT
113370560 TCAATTACGTACTTATTGTTTCATTCCCTTTTCT
1 TCAATTACGTACTTATTGTTTCATTCCCTTTTCT
113370594 T
1 T
113370595 ACTCATTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.17, C:0.23, G:0.06, T:0.54
Consensus pattern (34 bp):
TCAATTACGTACTTATTGTTTCATTCCCTTTTCT
Found at i:113371012 original size:39 final size:39
Alignment explanation
Indices: 113370931--113371012 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 39
113370921 ACAGTATCTC
* **
113370931 ATAAGAGCTGGTCCACCCGAAGCACACCAACAGAAACTT
1 ATAAGAGCTGATCCACCCGAAGCACACCAACAGAAAAGT
* *
113370970 ATAAGAGCTGATCCACTCGAATCACACCAAACA-AAAAGT
1 ATAAGAGCTGATCCACCCGAAGCACACC-AACAGAAAAGT
113371009 ATAA
1 ATAA
113371013 TGTGAAAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.89
40 4 0.11
ACGTcount: A:0.44, C:0.27, G:0.15, T:0.15
Consensus pattern (39 bp):
ATAAGAGCTGATCCACCCGAAGCACACCAACAGAAAAGT
Found at i:113373079 original size:18 final size:19
Alignment explanation
Indices: 113373040--113373079 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
113373030 GATTATATGA
*
113373040 CATTTCTTTAAGAAAATCT
1 CATTTCTTTAAGAAAATAT
113373059 CATTTCTTTAAG-AAATAT
1 CATTTCTTTAAGAAAATAT
113373077 CAT
1 CAT
113373080 GTGGCTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (19 bp):
CATTTCTTTAAGAAAATAT
Found at i:113373278 original size:3 final size:3
Alignment explanation
Indices: 113373270--113373324 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
113373260 GTATAAGCAA
113373270 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
113373318 AA- AAT AA
1 AAT AAT AA
113373325 AATTAAAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:113375944 original size:6 final size:6
Alignment explanation
Indices: 113375933--113375977 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
113375923 ATATTATTAC
113375933 ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATT
1 ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATTGTA ATT
113375978 AAAAAAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTGTA
Found at i:113377612 original size:16 final size:16
Alignment explanation
Indices: 113377591--113377623 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
113377581 AGGAGAAGAA
113377591 ATTCGGTTAAATGGGG
1 ATTCGGTTAAATGGGG
113377607 ATTCGGTTAAATGGGG
1 ATTCGGTTAAATGGGG
113377623 A
1 A
113377624 ACACGTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.06, G:0.36, T:0.30
Consensus pattern (16 bp):
ATTCGGTTAAATGGGG
Found at i:113380192 original size:20 final size:17
Alignment explanation
Indices: 113380152--113380205 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
113380142 CAAAACTATT
*
113380152 ATTTTATAAATTTTTTA
1 ATTTTTTAAATTTTTTA
113380169 ATTTTTTAATATTCTTTTA
1 ATTTTTTAA-ATT-TTTTA
*
113380188 GA-TTTTTAGATTTTTTA
1 -ATTTTTTAAATTTTTTA
113380205 A
1 A
113380206 AAAAAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
16 1 0.03
17 13 0.41
18 6 0.19
19 11 0.34
20 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (17 bp):
ATTTTTTAAATTTTTTA
Found at i:113382284 original size:147 final size:147
Alignment explanation
Indices: 113382017--113382312 Score: 592
Period size: 147 Copynumber: 2.0 Consensus size: 147
113382007 AATTACTATT
113382017 TTCCCCTAATATTTTAACTATTCACAATTTAGTCATTAAGCTCACAAAGTGAAATCTAATCATTT
1 TTCCCCTAATATTTTAACTATTCACAATTTAGTCATTAAGCTCACAAAGTGAAATCTAATCATTT
113382082 TAATCCCTCTTATAAGCTAAACAAAATCTTTGGGGACTTAATCCAACCCAAATAAATCATCATTT
66 TAATCCCTCTTATAAGCTAAACAAAATCTTTGGGGACTTAATCCAACCCAAATAAATCATCATTT
113382147 CATAAATTTATCATGAA
131 CATAAATTTATCATGAA
113382164 TTCCCCTAATATTTTAACTATTCACAATTTAGTCATTAAGCTCACAAAGTGAAATCTAATCATTT
1 TTCCCCTAATATTTTAACTATTCACAATTTAGTCATTAAGCTCACAAAGTGAAATCTAATCATTT
113382229 TAATCCCTCTTATAAGCTAAACAAAATCTTTGGGGACTTAATCCAACCCAAATAAATCATCATTT
66 TAATCCCTCTTATAAGCTAAACAAAATCTTTGGGGACTTAATCCAACCCAAATAAATCATCATTT
113382294 CATAAATTTATCATGAA
131 CATAAATTTATCATGAA
113382311 TT
1 TT
113382313 TTTACTAATT
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
147 149 1.00
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (147 bp):
TTCCCCTAATATTTTAACTATTCACAATTTAGTCATTAAGCTCACAAAGTGAAATCTAATCATTT
TAATCCCTCTTATAAGCTAAACAAAATCTTTGGGGACTTAATCCAACCCAAATAAATCATCATTT
CATAAATTTATCATGAA
Found at i:113383474 original size:23 final size:22
Alignment explanation
Indices: 113383448--113383505 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
113383438 TAGATAGATT
* *
113383448 ATAAATTAAATATATTATTTAAC
1 ATAAATTAAATATAATAATT-AC
*
113383471 ATAAATATAAATTTAATAATTAC
1 ATAAAT-TAAATATAATAATTAC
*
113383494 ATAAAGTAAATA
1 ATAAATTAAATA
113383506 ATGTTATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 5 0.17
23 13 0.45
24 11 0.38
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (22 bp):
ATAAATTAAATATAATAATTAC
Found at i:113385337 original size:15 final size:15
Alignment explanation
Indices: 113385317--113385367 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
113385307 TATATAGACT
113385317 TAAATACCATTAAAA
1 TAAATACCATTAAAA
*
113385332 TAAATACAACTTAACAAA
1 TAAATACCA-TT-A-AAA
113385350 TAAATACC-TCTAAAA
1 TAAATACCAT-TAAAA
113385365 TAA
1 TAA
113385368 TAAAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
15 14 0.47
16 4 0.13
17 2 0.07
18 10 0.33
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (15 bp):
TAAATACCATTAAAA
Found at i:113385364 original size:33 final size:34
Alignment explanation
Indices: 113385317--113385385 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 34
113385307 TATATAGACT
* * *
113385317 TAAATACCATTAAAATAA-ATACAACTTAACAAA
1 TAAATACCATTAAAATAATAAAAAAATTAACAAA
113385350 TAAATACC-TCTAAAATAATAAAAAAATTAACAAA
1 TAAATACCAT-TAAAATAATAAAAAAATTAACAAA
113385384 TA
1 TA
113385386 CTTTTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 1 0.03
33 16 0.52
34 14 0.45
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.25
Consensus pattern (34 bp):
TAAATACCATTAAAATAATAAAAAAATTAACAAA
Found at i:113385394 original size:30 final size:30
Alignment explanation
Indices: 113385351--113385412 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
113385341 CTTAACAAAT
113385351 AAATACCTCTAAAATAATAAAAAAATTAAC
1 AAATACCTCTAAAATAATAAAAAAATTAAC
* * * *
113385381 AAATACTTTTAAAATAATAACAAAGTTAAC
1 AAATACCTCTAAAATAATAAAAAAATTAAC
113385411 AA
1 AA
113385413 GAAAATAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.61, C:0.11, G:0.02, T:0.26
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAAAAAAATTAAC
Found at i:113385453 original size:11 final size:11
Alignment explanation
Indices: 113385437--113385475 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
113385427 TACAATATCT
113385437 AAATAATAACA
1 AAATAATAACA
* *
113385448 ACATAATAATA
1 AAATAATAACA
*
113385459 AAATAGTAACA
1 AAATAATAACA
113385470 AAATAA
1 AAATAA
113385476 AAAAATAACA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.21
Consensus pattern (11 bp):
AAATAATAACA
Found at i:113385622 original size:13 final size:13
Alignment explanation
Indices: 113385601--113385630 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
113385591 CCCAAGACTC
113385601 AATTCATTTTTTA
1 AATTCATTTTTTA
*
113385614 AATTTATTTTTTA
1 AATTCATTTTTTA
113385627 AATT
1 AATT
113385631 AGCTTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (13 bp):
AATTCATTTTTTA
Found at i:113388477 original size:13 final size:13
Alignment explanation
Indices: 113388438--113388481 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
113388428 ATATGTGAAT
113388438 AATATTATTTTAA
1 AATATTATTTTAA
*
113388451 ATTATTATTTTTAA
1 AATATTA-TTTTAA
113388465 AAT-TTATTATTAA
1 AATATTATT-TTAA
113388478 AATA
1 AATA
113388482 AAATTGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 2 0.08
13 16 0.62
14 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATATTATTTTAA
Found at i:113389602 original size:26 final size:25
Alignment explanation
Indices: 113389554--113389603 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
113389544 GTAAAATAAG
*
113389554 CTCAATTTTCATGCTCAACTTCAAA
1 CTCAATTTTCATGCCCAACTTCAAA
* *
113389579 CTCAATTGTTTATGCCCAAGTTCAA
1 CTCAATT-TTCATGCCCAACTTCAA
113389604 GTTGATCTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (25 bp):
CTCAATTTTCATGCCCAACTTCAAA
Found at i:113395007 original size:16 final size:16
Alignment explanation
Indices: 113394979--113395019 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
113394969 TTAAGGTTAG
113394979 GGTTTTG-TTTTTTAA
1 GGTTTTGTTTTTTTAA
113394994 GGTTTTGTTTTTTTAA
1 GGTTTTGTTTTTTTAA
113395010 GGTTTT-TTTT
1 GGTTTTGTTTT
113395020 ATATTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.10, C:0.00, G:0.20, T:0.71
Consensus pattern (16 bp):
GGTTTTGTTTTTTTAA
Found at i:113395075 original size:37 final size:34
Alignment explanation
Indices: 113395005--113395077 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
113394995 GTTTTGTTTT
*
113395005 TTTAAGGTTTTTTTTATATTTTTTAAGTTTAAAG
1 TTTAAGGTTTTTTTTATATTTTTTAAGTGTAAAG
* *
113395039 TTTAGGGTTTTTTTATATAATTTTTTGAGATGTAAAG
1 TTTAAGGTTTTTTT-TAT-ATTTTTTAAG-TGTAAAG
113395076 TT
1 TT
113395078 ACTAATTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 13 0.39
35 3 0.09
36 9 0.27
37 8 0.24
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (34 bp):
TTTAAGGTTTTTTTTATATTTTTTAAGTGTAAAG
Found at i:113396279 original size:21 final size:22
Alignment explanation
Indices: 113396253--113396297 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
113396243 AATTTTAAGT
*
113396253 GAGAAA-TTAAGAGGGAATTGA
1 GAGAAATTTAAGAGAGAATTGA
*
113396274 GAGAAATTTAAGAGAGATTTGA
1 GAGAAATTTAAGAGAGAATTGA
113396296 GA
1 GA
113396298 ATGTGAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (22 bp):
GAGAAATTTAAGAGAGAATTGA
Found at i:113399065 original size:85 final size:85
Alignment explanation
Indices: 113398965--113399137 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 85
113398955 GACCTAAAAT
113398965 ATATGTTTATTTATTTATCTAAACTCAATCCAAATAAATTTAAAAGAACATAAAATGTTGAATAA
1 ATATGTTTATTTATTTATCTAAACTCAATCCAAATAAATTTAAAAGAACATAAAATGTTGAATAA
113399030 AAATCATATAACACCAATTA
66 AAATCATATAACACCAATTA
*
113399050 ATATGTTTATTTATTTATCTAAACTCAATCCAAATAAATTTAGAAGAACATAAAATGTTGAATAA
1 ATATGTTTATTTATTTATCTAAACTCAATCCAAATAAATTTAAAAGAACATAAAATGTTGAATAA
113399115 AAATCATATAACACCAATTA
66 AAATCATATAACACCAATTA
113399135 ATA
1 ATA
113399138 AAGTAAACAT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (85 bp):
ATATGTTTATTTATTTATCTAAACTCAATCCAAATAAATTTAAAAGAACATAAAATGTTGAATAA
AAATCATATAACACCAATTA
Found at i:113400978 original size:20 final size:20
Alignment explanation
Indices: 113400953--113400991 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
113400943 TCTGTTCAAT
113400953 TCTGCTCTGTTCCATTCTGC
1 TCTGCTCTGTTCCATTCTGC
*
113400973 TCTGCTCTGTTCTATTCTG
1 TCTGCTCTGTTCCATTCTG
113400992 TCATGTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.31, G:0.15, T:0.49
Consensus pattern (20 bp):
TCTGCTCTGTTCCATTCTGC
Found at i:113400991 original size:15 final size:15
Alignment explanation
Indices: 113400941--113400976 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
113400931 CCTTTGTGTA
113400941 GCTCTGTTCAATTCT
1 GCTCTGTTCAATTCT
*
113400956 GCTCTGTTCCATTCT
1 GCTCTGTTCAATTCT
113400971 GCTCTG
1 GCTCTG
113400977 CTCTGTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.31, G:0.17, T:0.44
Consensus pattern (15 bp):
GCTCTGTTCAATTCT
Found at i:113404011 original size:3 final size:3
Alignment explanation
Indices: 113404003--113404052 Score: 82
Period size: 3 Copynumber: 16.3 Consensus size: 3
113403993 CCAAATATAG
*
113404003 AAT AAT AAT AAT AAT GAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
113404049 AAT A
1 AAT A
113404053 GAAACGCGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.95
4 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:113406037 original size:12 final size:12
Alignment explanation
Indices: 113406020--113406044 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113406010 GGCATCATGG
113406020 AGTTGTCATTTT
1 AGTTGTCATTTT
113406032 AGTTGTCATTTT
1 AGTTGTCATTTT
113406044 A
1 A
113406045 TTAAGTCAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
AGTTGTCATTTT
Found at i:113406566 original size:24 final size:24
Alignment explanation
Indices: 113406533--113406580 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
113406523 CAAGGTTTGC
113406533 AGCCTGGATATCTATATGTCAAAA
1 AGCCTGGATATCTATATGTCAAAA
*
113406557 AGCCTTGATATCTATATGTCAAAA
1 AGCCTGGATATCTATATGTCAAAA
113406581 CCATCCACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (24 bp):
AGCCTGGATATCTATATGTCAAAA
Found at i:113411134 original size:21 final size:22
Alignment explanation
Indices: 113411089--113411132 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
113411079 AAAATGAATG
113411089 ACAAAATGCATGAAGATTAAAA
1 ACAAAATGCATGAAGATTAAAA
*
113411111 ACAAAATGCATGAATATTAAAA
1 ACAAAATGCATGAAGATTAAAA
113411133 CATATATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.09, G:0.11, T:0.20
Consensus pattern (22 bp):
ACAAAATGCATGAAGATTAAAA
Found at i:113411430 original size:66 final size:67
Alignment explanation
Indices: 113411298--113411520 Score: 270
Period size: 67 Copynumber: 3.3 Consensus size: 67
113411288 GGGCGTAATA
* ** *
113411298 TGTAAAACCATAGCTC-GACTATGACAACATAGAGAGTCTACCAGGACATTAAACATGGGGTAAA
1 TGTAAAACCATAGCTCAG-CTATGGCAACATAGAGAGTCCGCCAGGATATTAAACATGGGGTAAA
113411362 ATG
65 ATG
* * *
113411365 TGTAAGACCATAGCTTAGCTATGGCAACATAAAGA-TCCGCCAGGATATTAAACATGGGGTAAAA
1 TGTAAAACCATAGCTCAGCTATGGCAACATAGAGAGTCCGCCAGGATATTAAACATGGGGTAAAA
113411429 TG
66 TG
* * * * ** * * **
113411431 TATAAAACCATAGCTCAACTATGGAAACATAGAGAGTTCGTTAGGATATTAAAAATGAGGTATGA
1 TGTAAAACCATAGCTCAGCTATGGCAACATAGAGAGTCCGCCAGGATATTAAACATGGGGTAAAA
113411496 TG
66 TG
113411498 TGTAAAACCATAGCTCAGCTATG
1 TGTAAAACCATAGCTCAGCTATG
113411521 ACAGCATATG
Statistics
Matches: 132, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
66 57 0.43
67 74 0.56
68 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (67 bp):
TGTAAAACCATAGCTCAGCTATGGCAACATAGAGAGTCCGCCAGGATATTAAACATGGGGTAAAA
TG
Found at i:113411556 original size:67 final size:67
Alignment explanation
Indices: 113411298--113411559 Score: 264
Period size: 67 Copynumber: 3.9 Consensus size: 67
113411288 GGGCGTAATA
* *
113411298 TGTAAAACCATAGCTC-GACTATGACAACATAGAGAGTCTACCAGGACATTAAACATGGGGTAAA
1 TGTAAAACCATAGCTCAG-CTATGACAACATAGAGAGTCCACCAGGACATTAAACATGAGGTAAA
113411362 ATG
65 ATG
* * * * * * *
113411365 TGTAAGACCATAGCTTAGCTATGGCAACATAAAGA-TCCGCCAGGATATTAAACATGGGGTAAAA
1 TGTAAAACCATAGCTCAGCTATGACAACATAGAGAGTCCACCAGGACATTAAACATGAGGTAAAA
113411429 TG
66 TG
* * * *** * * **
113411431 TATAAAACCATAGCTCAACTATGGA-AACATAGAGAGTTCGTTAGGATATTAAAAATGAGGTATG
1 TGTAAAACCATAGCTCAGCTAT-GACAACATAGAGAGTCCACCAGGACATTAAACATGAGGTAAA
113411495 ATG
65 ATG
* *
113411498 TGTAAAACCATAGCTCAGCTATGACAGCATATG-GAGTCCACC-GAGACAATAAACATGAGGTA
1 TGTAAAACCATAGCTCAGCTATGACAACATA-GAGAGTCCACCAG-GACATTAAACATGAGGTA
113411560 GTCTGTCGGG
Statistics
Matches: 159, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
66 58 0.36
67 99 0.62
68 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (67 bp):
TGTAAAACCATAGCTCAGCTATGACAACATAGAGAGTCCACCAGGACATTAAACATGAGGTAAAA
TG
Found at i:113415051 original size:2 final size:2
Alignment explanation
Indices: 113415044--113415080 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
113415034 TAATGCTAGA
113415044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
113415081 AAATTTCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:113415286 original size:48 final size:47
Alignment explanation
Indices: 113415234--113415328 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 47
113415224 TAATCACAAT
* *
113415234 ATTGCATAAAAGTGCCACATTTCGATT-GCATCAAAGTGT-CACATTTCA
1 ATTGCACAAAAGTGCCAC-TTTC-ATTCGCACCAAAGT-TCCACATTTCA
* *
113415282 ATTGCACCAAAGTGCCACTTTCATTCGCACCGAAGTTCCACATTTCA
1 ATTGCACAAAAGTGCCACTTTCATTCGCACCAAAGTTCCACATTTCA
113415329 TTTGTGCGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
46 4 0.10
47 21 0.51
48 16 0.39
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (47 bp):
ATTGCACAAAAGTGCCACTTTCATTCGCACCAAAGTTCCACATTTCA
Found at i:113415311 original size:23 final size:24
Alignment explanation
Indices: 113415242--113415328 Score: 106
Period size: 24 Copynumber: 3.7 Consensus size: 24
113415232 ATATTGCATA
* *
113415242 AAAGTGCCACATTTCGATTGCATC
1 AAAGTGCCACATTTCAATTGCACC
*
113415266 AAAGTGTCACATTTCAATTGCACC
1 AAAGTGCCACATTTCAATTGCACC
113415290 AAAGTGCCAC-TTTC-ATTCGCACC
1 AAAGTGCCACATTTCAATT-GCACC
* *
113415313 GAAGTTCCACATTTCA
1 AAAGTGCCACATTTCA
113415329 TTTGTGCGCA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
22 3 0.06
23 17 0.31
24 34 0.63
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (24 bp):
AAAGTGCCACATTTCAATTGCACC
Found at i:113416409 original size:123 final size:123
Alignment explanation
Indices: 113416190--113416435 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
113416180 GAAATGGCCT
113416190 ATTTGTAAGTAAAGAAAAAGTTAAAAATGGTGGTGGCGTGAAGATGAAAATGATATGGATGGTTT
1 ATTTGTAAGTAAAGAAAAAGTTAAAAATGGTGGTGGCGTGAAGATGAAAATGATATGGATGGTTT
113416255 TTCATCATCTTTCTATAATATTCTATAAAATGTCTAATTAATTTATTAATTAAAATAA
66 TTCATCATCTTTCTATAATATTCTATAAAATGTCTAATTAATTTATTAATTAAAATAA
*
113416313 ATTTGTAAGTAAAGAAAAAGTTGAAAATGGTGGTGGCGTGAAGATGAAAATGATATGGATGGTTT
1 ATTTGTAAGTAAAGAAAAAGTTAAAAATGGTGGTGGCGTGAAGATGAAAATGATATGGATGGTTT
113416378 TTCATCATCTTTCTATAATATTCTATAAAATGTCTAATTAATTTATTAATTAAAATAA
66 TTCATCATCTTTCTATAATATTCTATAAAATGTCTAATTAATTTATTAATTAAAATAA
113416436 TAAATAATTA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (123 bp):
ATTTGTAAGTAAAGAAAAAGTTAAAAATGGTGGTGGCGTGAAGATGAAAATGATATGGATGGTTT
TTCATCATCTTTCTATAATATTCTATAAAATGTCTAATTAATTTATTAATTAAAATAA
Found at i:113417364 original size:22 final size:22
Alignment explanation
Indices: 113417339--113417414 Score: 118
Period size: 22 Copynumber: 3.5 Consensus size: 22
113417329 ATGAAGTTAA
113417339 AAAAATAAATTTTAATTTAAAG
1 AAAAATAAATTTTAATTTAAAG
*
113417361 AAAAATAATTTTTAATTTAAAG
1 AAAAATAAATTTTAATTTAAAG
*
113417383 AAAAAATAACTTTTAATTTAAAG
1 -AAAAATAAATTTTAATTTAAAG
113417406 -AAAATAAAT
1 AAAAATAAAT
113417415 GTAATTATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
21 8 0.16
22 21 0.42
23 21 0.42
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (22 bp):
AAAAATAAATTTTAATTTAAAG
Found at i:113417387 original size:23 final size:23
Alignment explanation
Indices: 113417338--113417409 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
113417328 CATGAAGTTA
113417338 AAAAAATAAATTTTAATTTAAAG
1 AAAAAATAAATTTTAATTTAAAG
*
113417361 -AAAAATAATTTTTAATTTAAAG
1 AAAAAATAAATTTTAATTTAAAG
*
113417383 AAAAAATAACTTTTAATTTAAAG
1 AAAAAATAAATTTTAATTTAAAG
113417406 AAAA
1 AAAA
113417410 TAAATGTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
22 21 0.46
23 25 0.54
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (23 bp):
AAAAAATAAATTTTAATTTAAAG
Found at i:113417432 original size:45 final size:45
Alignment explanation
Indices: 113417337--113417432 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
113417327 TCATGAAGTT
* *
113417337 AAAAAAATAAATTTTAATTTAAAGAAAAATAATTTTTAATTTAAA
1 AAAAAAATAAATTTTAATTTAAAGAAAAATAATATGTAATTTAAA
* * *
113417382 GAAAAAATAACTTTTAATTTAAAG-AAAATAA-ATGTAATTATATA
1 AAAAAAATAAATTTTAATTTAAAGAAAAATAATATGTAATT-TAAA
113417426 AAAAAAA
1 AAAAAAA
113417433 GTTTCAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 6 0.14
44 16 0.36
45 22 0.50
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (45 bp):
AAAAAAATAAATTTTAATTTAAAGAAAAATAATATGTAATTTAAA
Found at i:113418609 original size:14 final size:14
Alignment explanation
Indices: 113418590--113418616 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
113418580 AAAGATGAAA
113418590 AGGTTATAGAATAT
1 AGGTTATAGAATAT
113418604 AGGTTATAGAATA
1 AGGTTATAGAATA
113418617 CAAGTCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (14 bp):
AGGTTATAGAATAT
Found at i:113418739 original size:44 final size:44
Alignment explanation
Indices: 113418676--113419061 Score: 357
Period size: 44 Copynumber: 8.8 Consensus size: 44
113418666 TATCATTAGG
** * *
113418676 ATTTATATTTAACAGGTACTATGTACCGATGTTGGCTATGTGTC
1 ATTTATATGCAACAAGTACTATGTACCGATGTTGGCTATGTGCC
*
113418720 ATTTATATGCAACAAGTACTATGTACC-AGTGTAGGCTATGTGCC
1 ATTTATATGCAACAAGTACTATGTACCGA-TGTTGGCTATGTGCC
** ** *
113418764 ATTTATATGC-AGTAGATACTATGTATTGATGTTGGCTATGTGTC
1 ATTTATATGCAACAAG-TACTATGTACCGATGTTGGCTATGTGCC
* * * * *
113418808 ATTTATATACAGCAAGTACTATGTACC-ATTGTTAGTTATATGCC
1 ATTTATATGCAACAAGTACTATGTACCGA-TGTTGGCTATGTGCC
* * *
113418852 ATTTATATGCAACAAGTATTATGTATCGATGTTGGCTATGTGCT
1 ATTTATATGCAACAAGTACTATGTACCGATGTTGGCTATGTGCC
* * ** * *
113418896 ATTTATATGCAGCAGGTACTATGTATTGATGTTGGCTATATGTC
1 ATTTATATGCAACAAGTACTATGTACCGATGTTGGCTATGTGCC
* * ** * * * *
113418940 AGTTATATACAGTAGGTATTATGTACC-AGTGTTAGTTATGTGCC
1 ATTTATATGCAACAAGTACTATGTACCGA-TGTTGGCTATGTGCC
* *
113418984 ATTTATATACAACAAGTACTATGTATCGATGTTGGCTATGTGCC
1 ATTTATATGCAACAAGTACTATGTACCGATGTTGGCTATGTGCC
* * * * *
113419028 ATTTATATCCAGCAGGTATTATGTACTGATGTTG
1 ATTTATATGCAACAAGTACTATGTACCGATGTTG
113419062 CAGTAGTAGA
Statistics
Matches: 274, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
43 6 0.02
44 263 0.96
45 5 0.02
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (44 bp):
ATTTATATGCAACAAGTACTATGTACCGATGTTGGCTATGTGCC
Found at i:113418916 original size:132 final size:131
Alignment explanation
Indices: 113418691--113419061 Score: 528
Period size: 132 Copynumber: 2.8 Consensus size: 131
113418681 TATTTAACAG
* * * * *
113418691 GTACTATGTACCGATGTTGGCTATGTGTCATTTATATGCAACAAGTACTATGTA-CCAGTGTAGG
1 GTACTATGTACC-ATGTTAGTTATGTGCCATTTATATGCAACAAGTACTATGTATCGA-TGTTGG
* * * *
113418755 CTATGTGCCATTTATATGCAGTAGATACTATGTATTGATGTTGGCTATGTGTCATTTATATACAG
64 CTATGTGCCATTTATATGCAGCAGGTACTATGTATTGATGTTGGCTATATGTCAGTTATATACAG
113418820 CAA
129 CAA
* *
113418823 GTACTATGTACCATTGTTAGTTATATGCCATTTATATGCAACAAGTATTATGTATCGATGTTGGC
1 GTACTATGTACCA-TGTTAGTTATGTGCCATTTATATGCAACAAGTACTATGTATCGATGTTGGC
* *
113418888 TATGTGCTATTTATATGCAGCAGGTACTATGTATTGATGTTGGCTATATGTCAGTTATATACAGT
65 TATGTGCCATTTATATGCAGCAGGTACTATGTATTGATGTTGGCTATATGTCAGTTATATACAGC
*
113418953 AG
130 AA
* *
113418955 GTATTATGTACCAGTGTTAGTTATGTGCCATTTATATACAACAAGTACTATGTATCGATGTTGGC
1 GTACTATGTACCA-TGTTAGTTATGTGCCATTTATATGCAACAAGTACTATGTATCGATGTTGGC
* * *
113419020 TATGTGCCATTTATATCCAGCAGGTATTATGTACTGATGTTG
65 TATGTGCCATTTATATGCAGCAGGTACTATGTATTGATGTTG
113419062 CAGTAGTAGA
Statistics
Matches: 214, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
131 1 0.00
132 211 0.99
133 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (131 bp):
GTACTATGTACCATGTTAGTTATGTGCCATTTATATGCAACAAGTACTATGTATCGATGTTGGCT
ATGTGCCATTTATATGCAGCAGGTACTATGTATTGATGTTGGCTATATGTCAGTTATATACAGCA
A
Found at i:113430183 original size:28 final size:28
Alignment explanation
Indices: 113430151--113430265 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
113430141 TACCTGTATC
* *
113430151 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
113430179 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
113430208 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
113430237 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
113430265 T
1 T
113430266 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:113430212 original size:57 final size:58
Alignment explanation
Indices: 113430142--113430252 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
113430132 AGTTTCACAT
* * *
113430142 ACCTGTATCTGGCCCATTAAGCC-CAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
113430199 ACCTGTATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCA
113430253 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:113431196 original size:33 final size:33
Alignment explanation
Indices: 113431154--113431243 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
113431144 AAAAGAAAGA
* *
113431154 AAAACAAAAGGGTTTTCAGCTTTTTGGATCTTG
1 AAAAGAAAAGGGTTTTCGGCTTTTTGGATCTTG
*
113431187 AAAAGAAAAGGGTTTTTGGCTTTTTGGATCTTG
1 AAAAGAAAAGGGTTTTCGGCTTTTTGGATCTTG
113431220 AAAAGAAAAGGGTTTTCGGCTTTT
1 AAAAGAAAAGGGTTTTCGGCTTTT
113431244 GGAGAAAGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.37
Consensus pattern (33 bp):
AAAAGAAAAGGGTTTTCGGCTTTTTGGATCTTG
Found at i:113434747 original size:57 final size:58
Alignment explanation
Indices: 113434684--113434792 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 58
113434674 AATTTTACAT
* * * *
113434684 ACCTGTATCTGGCCCATTAAGCC-CAATCATATTCATTTGGCCCATTAGGCCAAAATC
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCAAAATC
* * *
113434741 ACCTGTATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCC
113434793 TAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.48
58 23 0.52
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCAAAATC
Found at i:113434793 original size:29 final size:29
Alignment explanation
Indices: 113434693--113434807 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
113434683 TACCTGTATC
* * * * *
113434693 TGGCCCATTAAGCC-CAATCATATTCATT
1 TGGCCCATTAGGCCTAAATCACATTTATA
* * *
113434721 TGGCCCATTAGGCCAAAATCACCTGTATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
113434750 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
* * *
113434779 TGGCCCGTTAGGCCT-AGTCACATTCATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
113434807 T
1 T
113434808 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 25 0.34
29 48 0.66
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCTAAATCACATTTATA
Found at i:113435047 original size:24 final size:24
Alignment explanation
Indices: 113435018--113435068 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
113435008 GTAGCCAAAC
113435018 TTTCGGCTTTTCGACATTTCGACT
1 TTTCGGCTTTTCGACATTTCGACT
* * *
113435042 TTTCGGCTTTTTGGCATTTTGACT
1 TTTCGGCTTTTCGACATTTCGACT
113435066 TTT
1 TTT
113435069 GTCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.10, C:0.20, G:0.18, T:0.53
Consensus pattern (24 bp):
TTTCGGCTTTTCGACATTTCGACT
Found at i:113442652 original size:48 final size:48
Alignment explanation
Indices: 113442541--113442755 Score: 253
Period size: 46 Copynumber: 4.6 Consensus size: 48
113442531 TGATATGTGT
* * *
113442541 GCTAGTGTAAGACATGTCTGAGACATGCATCAG-C-C-ACAT-TACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAC-A-A
*
113442587 GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * ** *
113442635 GCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
113442681 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* *
113442729 GCTAGTGTAAGACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
113442756 GCGTTAGCTT
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
46 68 0.48
47 3 0.02
48 64 0.45
49 4 0.03
50 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Done.