Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 394 of 444
Found at i:114357420 original size:423 final size:422
Alignment explanation
Indices: 114356622--114357862 Score: 1928
Period size: 423 Copynumber: 2.9 Consensus size: 422
114356612 CAACGGCTTA
*
114356622 AACCAGTTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
* *
114356687 ACTTGAAAGCTACAGTCGATATTAGAATTGCCAAACGATCATGAGCCAATAATGAAAGCTCATGC
66 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
* *
114356752 TATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGTTATTCAACTTAAGCTTTGG
131 TATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
* *
114356817 TTCCTCCAAATAAATGTTCAACTATGACTTTTTACTCTTAGTATTGCATTCACTTAAGTATCGAT
196 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
114356882 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
261 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
*
114356947 CAAGAATTAACAGGATCATTATTCGAAACATTGGAACTTCTGACCAAATAGGAAGACGTGGATTT
326 CAAGAATTAACA-GATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTT
*
114357012 GGAGTTCCAGTCATCAAAGCAAGCAACAAATTG
390 GGAGTTCCAGTCATCAAAGCAAACAACAAATTG
* * *
114357045 AACTAATTTTGATTTATGTGAACTCTTCAAAGGTGTGATAACTTTCTTCTCCATGCTAAAAGCCA
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
114357110 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
66 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
114357175 TATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
131 TATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
* *
114357240 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTTTTAGTATTGCATTCACTTAAGTATTGAT
196 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
* *
114357305 TATAACCATTACCCTTATCATATTCTCCTCCCAAATTAGCCCTATTAACATTGAGTTGATGCAAA
261 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
* *
114357370 CTAGAATTAACATGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACATGGATTT
326 CAAGAATTAACA-GATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTT
*
114357435 GGAGTTCCAGTCATCAAAGCAAACAACAACTTG
390 GGAGTTCCAGTCATCAAAGCAAACAACAAATTG
* * * *
114357468 AACCAGTTTTGGTTTATGTGAACTCTTCGAAGTTGTGATAGCTTTCTTC-CTCATGCTAAAAGCC
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTC-CATGCTAAAAGCC
* * * * *
114357532 AACTCGAAAGCTACAGTCGATATTGGAATT-ACTAAAGATAACGAGCCAATAATGAAAGCTCATG
65 AACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATG
* * * * * * * *
114357596 ATATCGAATTGAAGTTTTGCTCCAGTAATCCAATACATCTATTTGGCTATTTAACTCAAGCTCTA
130 CTATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTG
* * * *
114357661 ATTCTTCCAAATAAATGTTTAACTTTGACTTTTCACTCTTAGTATTGGATTCACTTAAGTATCGA
195 GTTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGA
* * * * * * * *
114357726 TTATAATCACCACTCTCATTATATGCTCTTCCCAAATCAGCCCTATTAACATTGAGTTGATACAA
260 TTATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAA
* * * * * * *
114357791 ACCAGAATTAATAGTATCATTATCCGAAACATTGGAACTCCCGACCAAAGAGAAAGACGTGCATT
325 ACAAGAATTAACAG-ATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATT
*
114357856 TGAAGTT
389 TGGAGTT
114357863 TTTAACATAT
Statistics
Matches: 752, Mismatches: 64, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
421 1 0.00
422 263 0.35
423 488 0.65
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (422 bp):
AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
TATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
CAAGAATTAACAGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTTG
GAGTTCCAGTCATCAAAGCAAACAACAAATTG
Found at i:114359286 original size:18 final size:18
Alignment explanation
Indices: 114359263--114359297 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
114359253 TGCAATATAT
114359263 ATAAAAACAATAAATAAC
1 ATAAAAACAATAAATAAC
*
114359281 ATAAAAATAATAAATAA
1 ATAAAAACAATAAATAA
114359298 TTTATGAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAACAATAAATAAC
Found at i:114359446 original size:18 final size:19
Alignment explanation
Indices: 114359417--114359459 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
114359407 CTAAATACAA
*
114359417 TTAAAAATAAAT-GAGGTAT
1 TTAAAAATAAATAGA-ATAT
114359436 TTAAAAA-AAATAGAATAT
1 TTAAAAATAAATAGAATAT
114359454 TTAAAA
1 TTAAAA
114359460 CAATATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (19 bp):
TTAAAAATAAATAGAATAT
Found at i:114359699 original size:12 final size:12
Alignment explanation
Indices: 114359682--114359743 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
114359672 AAAATTATAC
114359682 ATAATATAATAA
1 ATAATATAATAA
*
114359694 ATAATAT-A-CA
1 ATAATATAATAA
*
114359704 ATAAAAT-ATAA
1 ATAATATAATAA
114359715 ATAATATAATAA
1 ATAATATAATAA
*
114359727 ATAATACAA-AA
1 ATAATATAATAA
114359738 ATAATA
1 ATAATA
114359744 ATAAAATAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.19
11 16 0.37
12 19 0.44
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAATATAATAA
Found at i:114359701 original size:21 final size:20
Alignment explanation
Indices: 114359677--114359752 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 20
114359667 ATTTTAAAAT
114359677 TATACATAATATAATAAATAA
1 TATA-ATAATATAATAAATAA
*
114359698 TATACAATAAAAT-ATAAATAA
1 TAT--AATAATATAATAAATAA
114359719 TATAATAA-ATAATACAA-AA
1 TATAATAATATAATA-AATAA
*
114359738 -ATAATAATAAAATAA
1 TATAATAATATAATAA
114359753 CTATTTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
18 10 0.21
19 15 0.31
20 2 0.04
21 14 0.29
22 6 0.12
23 1 0.02
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (20 bp):
TATAATAATATAATAAATAA
Found at i:114359732 original size:26 final size:26
Alignment explanation
Indices: 114359678--114359752 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
114359668 TTTTAAAATT
*
114359678 ATACATAATATAATAA-ATAATATACA
1 ATACA-AATATAATAATATAATAAACA
*
114359704 ATA-AAATATAAATAATATAATAAATA
1 ATACAAATAT-AATAATATAATAAACA
* *
114359730 ATACAAAAATAATAATAAAATAA
1 ATACAAATATAATAATATAATAA
114359753 CTATTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
24 5 0.12
25 6 0.14
26 26 0.62
27 5 0.12
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (26 bp):
ATACAAATATAATAATATAATAAACA
Found at i:114359748 original size:33 final size:33
Alignment explanation
Indices: 114359672--114359748 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 33
114359662 CACAAATTTT
* *
114359672 AAAATTATACATAATATAATAAATAATATACAA
1 AAAAATATAAATAATATAATAAATAATATACAA
*
114359705 TAAAATATAAATAATATAATAAAT-A-ATACAA
1 AAAAATATAAATAATATAATAAATAATATACAA
114359736 AAATAATAATAAA
1 AAA-AAT-ATAAA
114359749 ATAACTATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 8 0.21
32 4 0.11
33 26 0.68
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (33 bp):
AAAAATATAAATAATATAATAAATAATATACAA
Found at i:114359813 original size:25 final size:25
Alignment explanation
Indices: 114359785--114359833 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
114359775 AGGTTTAAAG
*
114359785 TAAAATAAATAATATACAAAATATT
1 TAAAATAAATAATATAAAAAATATT
*
114359810 TAAAATAAATTATATAAAAAATAT
1 TAAAATAAATAATATAAAAAATAT
114359834 ATATATAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAATATAAAAAATATT
Found at i:114361485 original size:45 final size:45
Alignment explanation
Indices: 114361433--114361942 Score: 270
Period size: 45 Copynumber: 11.4 Consensus size: 45
114361423 ACAGAGACGC
*
114361433 CAAATCTGTCATCCTCGATCTGCTTCGATGTAAACACACGAATGT
1 CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
* * * * * * *
114361478 CAGATCTG-CTATCTTCGATCTGCTCCCCATCTAATACA-AAG-ACGC
1 CAAATCTGTC-ATCTTCGATCTGCT-TCGATGTAA-ACACACGAATGT
*
114361523 CAAATCTATCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
1 CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
* * * * * ** * ***
114361568 CAGATCTG-CTACCTTCGATCTACTGC-CTGTCTGATACA-GAAACCC
1 CAAATCTGTC-ATCTTCGATCTGCTTCGATGT-AAACACACG-AATGT
* *
114361613 CAAATCTATCATCTTCGATCTACTTCGATGTAAACACACGAATGT
1 CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
* * * * * * *
114361658 CAAATCTGTTATCTTTGATCTACTCCCCG-TCT-AATACA-GAGACG-
1 CAAATCTGTCATCTTCGATCTGCT--TCGATGTAAACACACGA-ATGT
* * *
114361702 CAAAACCTGTCATCTAT-GATCTACTTCGATGTAAACACATGAATGT
1 C-AAATCTGTCATCT-TCGATCTGCTTCGATGTAAACACACGAATGT
* * * *
114361748 CAGATCTG-CTATCTTCGATCTGCTTCCCG-TCT-AATACA-GAGATGC
1 CAAATCTGTC-ATCTTCGATCTGCTT--CGATGTAAACACACGA-ATGT
* *
114361793 CAAA-CTGTCATCTTCGATTTGCTTCGATATAAACACACGAATGT
1 CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
* * * * *
114361837 CAGATCTG-CTATCTTCGATCTGCTCCCCG-TCTAATACAGA-GACT-T
1 CAAATCTGTC-ATCTTCGATCTGCT--TCGATGTAA-ACACACGAATGT
* * *
114361882 CAAATCTATCACCTTCGATATGCTTCGATGTAAACACACGAATGT
1 CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
*
114361927 CAGATCTG-CTATCTTC
1 CAAATCTGTC-ATCTTC
114361943 TCCCTGTCTA
Statistics
Matches: 345, Mismatches: 80, Indels: 80
0.68 0.16 0.16
Matches are distributed among these distances:
42 2 0.01
43 13 0.04
44 60 0.17
45 227 0.66
46 30 0.09
47 13 0.04
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (45 bp):
CAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGT
Found at i:114361512 original size:90 final size:90
Alignment explanation
Indices: 114361398--114361942 Score: 745
Period size: 90 Copynumber: 6.1 Consensus size: 90
114361388 CCATGCTGAA
* * *
114361398 ATCTTTGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTGTCATCCTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCTCGATCTGCTTCGATG
114361463 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * *
114361488 ATCTTCGATCTGCTCCCCATCTAATACAAAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCTCGATCTGCTTCGATG
114361553 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * * * * * * * *
114361578 ACCTTCGATCTACTGCCTGTCTGATACAGAAACCCCAAATCTATCATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCTCGATCTGCTTCGATG
* *
114361643 TAAACACACGAATGTCAAATCTGTT
66 TAAACACACGAATGTCAGATCTGCT
* * * * * * *
114361668 ATCTTTGATCTACTCCCCGTCTAATACAGAGACGCAAAACCTGTCAT-CTATGATCTACTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCT-CGATCTGCTTCGAT
*
114361732 GTAAACACATGAATGTCAGATCTGCT
65 GTAAACACACGAATGTCAGATCTGCT
* * * * * *
114361758 ATCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAA-CTGTCATCTTCGATTTGCTTCGATA
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCTCGATCTGCTTCGATG
114361822 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
** *
114361847 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACTTCAAATCTATCA-CCTTCGATATGCTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCC-TCGATCTGCTTCGAT
114361911 GTAAACACACGAATGTCAGATCTGCT
65 GTAAACACACGAATGTCAGATCTGCT
114361937 ATCTTC
1 ATCTTC
114361943 TCCCTGTCTA
Statistics
Matches: 399, Mismatches: 52, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
89 79 0.20
90 320 0.80
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCCTCGATCTGCTTCGATG
TAAACACACGAATGTCAGATCTGCT
Found at i:114373520 original size:64 final size:67
Alignment explanation
Indices: 114373442--114373575 Score: 177
Period size: 67 Copynumber: 2.0 Consensus size: 67
114373432 TACATGATAC
* * * *
114373442 ATACTTTAACATTTCATGC-AAATA-TA-ATATAAAA-AATGATAAATAACGACATAAATTACAT
1 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGA-AAATAACAACATAAATTACAT
114373503 AAT
65 AAT
* *
114373506 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTACATA
1 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAAAATAACAACATAAATTACATA
114373571 AT
66 AT
114373573 ATA
1 ATA
114373576 TGTACAATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
64 18 0.30
65 5 0.08
66 1 0.02
67 31 0.52
68 5 0.08
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29
Consensus pattern (67 bp):
ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAAAATAACAACATAAATTACATA
AT
Found at i:114373570 original size:67 final size:64
Alignment explanation
Indices: 114373423--114373575 Score: 173
Period size: 67 Copynumber: 2.3 Consensus size: 64
114373413 AATACTAAAT
* * * * *
114373423 AATATAAACTACATGATACATACTTTAACATTTCATGCAAATATAATATAAAAAATGATAAATAA
1 AATATAAATTACAT-A-ATATACATTAACATTTCATGCAAATAAAATAGAAAAAATGATAAATAA
114373488 C
64 C
* * *
114373489 GACATAAATTACATAATATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGA-ATAT
1 AATATAAATTACATAATATACATTAACATTTCATGC-AAATA-AA-ATAGAAAA-AATGATAAAT
114373553 AAC
62 AAC
114373556 AATATAAATTACATAATATA
1 AATATAAATTACATAATATA
114373576 TGTACAATAA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 19 0.26
65 6 0.08
66 12 0.16
67 31 0.42
68 5 0.07
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (64 bp):
AATATAAATTACATAATATACATTAACATTTCATGCAAATAAAATAGAAAAAATGATAAATAAC
Found at i:114374039 original size:13 final size:13
Alignment explanation
Indices: 114373996--114374039 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
114373986 TTACATACTA
114373996 AATATTTAATAAT
1 AATATTTAATAAT
* *
114374009 AATATATAAAAATGT
1 AATATTTAATAA--T
114374024 AATATTTAATAAT
1 AATATTTAATAAT
114374037 AAT
1 AAT
114374040 TCACAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 14 0.56
15 11 0.44
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (13 bp):
AATATTTAATAAT
Found at i:114374078 original size:12 final size:12
Alignment explanation
Indices: 114374061--114374129 Score: 72
Period size: 12 Copynumber: 6.0 Consensus size: 12
114374051 AAAATTATAC
114374061 ATAATATAATAA
1 ATAATATAATAA
*
114374073 ATAATAT-A-CA
1 ATAATATAATAA
*
114374083 ATAAAAT-ATAA
1 ATAATATAATAA
114374094 ATAATATAATAA
1 ATAATATAATAA
* *
114374106 ATAATACAAAAA
1 ATAATATAATAA
*
114374118 ATAATAAAATAA
1 ATAATATAATAA
114374130 CTATTTTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
10 8 0.17
11 8 0.17
12 31 0.66
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATATAATAA
Found at i:114374080 original size:21 final size:20
Alignment explanation
Indices: 114374056--114374111 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
114374046 ATTTTAAAAT
114374056 TATACATAATATAATAAATAA
1 TATACATAA-ATAATAAATAA
114374077 TATACAATAAA-ATATAAATAA
1 TATAC-ATAAATA-ATAAATAA
114374098 TATA-ATAAATAATA
1 TATACATAAATAATA
114374112 CAAAAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 8 0.25
20 2 0.06
21 18 0.56
22 4 0.12
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (20 bp):
TATACATAAATAATAAATAA
Found at i:114374085 original size:19 final size:18
Alignment explanation
Indices: 114374063--114374125 Score: 53
Period size: 19 Copynumber: 3.6 Consensus size: 18
114374053 AATTATACAT
114374063 AATATAATAAATAATATA
1 AATATAATAAATAATATA
*
114374081 CAATA-AA-ATATAA-AT-
1 -AATATAATAAATAATATA
*
114374096 AATATAATAAATAATACAA
1 AATATAATAAATAATA-TA
*
114374115 AAAATAATAAA
1 AATATAATAAA
114374126 ATAACTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
14 4 0.11
15 2 0.06
16 7 0.20
17 6 0.17
18 2 0.06
19 14 0.40
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AATATAATAAATAATATA
Found at i:114374189 original size:25 final size:25
Alignment explanation
Indices: 114374161--114374209 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
114374151 AGGTTTAAAG
*
114374161 TAAAATAAATAATATACAAAATATT
1 TAAAATAAATAATATAAAAAATATT
*
114374186 TAAAATAAATTATATAAAAAATAT
1 TAAAATAAATAATATAAAAAATAT
114374210 ATATATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAATATAAAAAATATT
Found at i:114384149 original size:4 final size:4
Alignment explanation
Indices: 114384140--114384191 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
114384130 AGTGCATGCG
114384140 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
114384188 TACA
1 TACA
114384192 CAAATGCATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:114392682 original size:16 final size:16
Alignment explanation
Indices: 114392661--114392695 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
114392651 AATAATTAAA
114392661 ATATAAATTTTATAAC
1 ATATAAATTTTATAAC
*
114392677 ATATAAATTTTATACC
1 ATATAAATTTTATAAC
114392693 ATA
1 ATA
114392696 ATTTACTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATAAATTTTATAAC
Found at i:114398583 original size:14 final size:14
Alignment explanation
Indices: 114398564--114398600 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
114398554 GAAAACGTGT
*
114398564 AATAATATTATTTG
1 AATAATATTATTTA
114398578 AATAATATTATTTA
1 AATAATATTATTTA
114398592 AGATAATAT
1 A-ATAATAT
114398601 AAGTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (14 bp):
AATAATATTATTTA
Found at i:114400222 original size:17 final size:18
Alignment explanation
Indices: 114400200--114400233 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
114400190 TTTCTACTTC
114400200 TGCTTTTG-AAAAAAAAG
1 TGCTTTTGTAAAAAAAAG
114400217 TGCTTTTGTAAAAAAAA
1 TGCTTTTGTAAAAAAAA
114400234 AATTACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (18 bp):
TGCTTTTGTAAAAAAAAG
Found at i:114403162 original size:39 final size:39
Alignment explanation
Indices: 114403108--114403233 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
114403098 TTCAGTGATG
*
114403108 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
114403147 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
114403186 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
114403225 TATGTCCGG
1 TATATCCGG
114403234 GCTAAAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:114403250 original size:39 final size:39
Alignment explanation
Indices: 114403108--114403260 Score: 137
Period size: 39 Copynumber: 3.9 Consensus size: 39
114403098 TTCAGTGATG
** ** * *
114403108 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAA
** * * *
114403147 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAA
* *
114403186 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAA
* * * *
114403225 TATGTCCGGGC-TAAAGTCCCACAGGCTTCGAGCTGG
1 TATATCCGGACTTAAAGT-CCACAGGCTACGTGCTGG
114403261 TATTATACCG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 5 0.05
39 98 0.95
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAA
Found at i:114403250 original size:78 final size:78
Alignment explanation
Indices: 114403108--114403251 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
114403098 TTCAGTGATG
* * * * ** *
114403108 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
114403173 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
114403186 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCACAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCACAGG
114403250 CT
65 CT
114403252 TCGAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.07
78 52 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
TATGTGCTGGAAT
Found at i:114403486 original size:2 final size:2
Alignment explanation
Indices: 114403479--114403522 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
114403469 ATCAAAGAAG
*
114403479 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114403521 AT
1 AT
114403523 GATTGATGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114408599 original size:39 final size:39
Alignment explanation
Indices: 114408545--114408670 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
114408535 TTCAGTGATG
*
114408545 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
114408584 TATATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
114408623 TATATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
114408662 TATGTCCGG
1 TATATCCGG
114408671 GCTAAAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:114408704 original size:78 final size:78
Alignment explanation
Indices: 114408545--114408688 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
114408535 TTCAGTGATG
* * * * **
114408545 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
114408610 TATGTACTGGAAT
66 TATGTACTGGAAT
* * *
114408623 TATATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
114408687 CT
65 CT
114408689 TCGAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.07
78 52 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTACTGGAAT
Found at i:114408924 original size:2 final size:2
Alignment explanation
Indices: 114408917--114408950 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
114408907 TCAAAGAAGA
*
114408917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114408951 GATTGATGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:114412803 original size:42 final size:42
Alignment explanation
Indices: 114412740--114412830 Score: 164
Period size: 42 Copynumber: 2.2 Consensus size: 42
114412730 ATTTTTTGTC
114412740 CACACGGGCAGAGACAAGGGAGTGTGTCTCAGCCGTGTGTGA
1 CACACGGGCAGAGACAAGGGAGTGTGTCTCAGCCGTGTGTGA
* *
114412782 CACACGGGCAGAGACACGGGAGTGTGTCTTAGCCGTGTGTGA
1 CACACGGGCAGAGACAAGGGAGTGTGTCTCAGCCGTGTGTGA
114412824 CACACGG
1 CACACGG
114412831 TCACGTTACA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.16
Consensus pattern (42 bp):
CACACGGGCAGAGACAAGGGAGTGTGTCTCAGCCGTGTGTGA
Found at i:114412848 original size:30 final size:30
Alignment explanation
Indices: 114412814--114412881 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
114412804 TGTGTCTTAG
114412814 CCGTGTGTGACACACGGTCACGTTACACGA
1 CCGTGTGTGACACACGGTCACGTTACACGA
114412844 CCGTGTGTGACACACGGTCACGTTACACGA
1 CCGTGTGTGACACACGGTCACGTTACACGA
114412874 CCGTGTGT
1 CCGTGTGT
114412882 CCCTTGGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (30 bp):
CCGTGTGTGACACACGGTCACGTTACACGA
Found at i:114428473 original size:19 final size:20
Alignment explanation
Indices: 114428449--114428490 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
114428439 AACTCTTCAA
114428449 TTGGTCTA-GTATCGATACT
1 TTGGTCTATGTATCGATACT
*
114428468 TTGGTCTATTTTATCGATACT
1 TTGGTCTA-TGTATCGATACT
114428489 TT
1 TT
114428491 CATAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
21 12 0.60
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (20 bp):
TTGGTCTATGTATCGATACT
Found at i:114433639 original size:29 final size:29
Alignment explanation
Indices: 114433570--114433639 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
114433560 CTATCGAATT
* *
114433570 ATAAAAAGGGATGGTGACGACTATCAACA
1 ATAAAAAGGGATGGTGACGACCATCAAAA
*
114433599 ATAAAAATGGATGGTGACGACCATCGAAAA
1 ATAAAAAGGGATGGTGACGACCATC-AAAA
*
114433629 AT-GAAAGGGAT
1 ATAAAAAGGGAT
114433640 AGCTTCAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.46, C:0.11, G:0.26, T:0.17
Consensus pattern (29 bp):
ATAAAAAGGGATGGTGACGACCATCAAAA
Found at i:114433661 original size:29 final size:30
Alignment explanation
Indices: 114433632--114433701 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
114433622 TCGAAAAATG
*
114433632 AAAGGGATAGCTTCAGCTATCGAATTATGA
1 AAAGGGATAGCTTCAGCTATCAAATTATGA
* * ** *
114433662 AAAGGTATAGTTTTGGTTATCAAATTATGA
1 AAAGGGATAGCTTCAGCTATCAAATTATGA
114433692 AAAGGGATAG
1 AAAGGGATAG
114433702 TGACGACCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (30 bp):
AAAGGGATAGCTTCAGCTATCAAATTATGA
Found at i:114433705 original size:118 final size:119
Alignment explanation
Indices: 114433561--114433785 Score: 319
Period size: 118 Copynumber: 1.9 Consensus size: 119
114433551 TAGCTTCAGC
* * * *
114433561 TATCGAATTATAAAAAGGGATGGTGACGACTATCAACAATAAAAATGGATGGTGACGACCATCGA
1 TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATC-A
* *
114433626 AA-AATGA-AAGGGATAGCTTCAGCTATCGAATTATGAAAAGGTATAGTTTTGGT
65 AATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGGTATAGTTTTGGT
* * *
114433679 TATCAAATTATGAAAAGGGATAGTGACGACCATGAACAATAAAAAGGGATGGTGATGACCATCAA
1 TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATCAA
* * *
114433744 ATAATGATAAGAGATAGCTTCGGCTATTGAGCTATGAAAAGG
66 ATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGG
114433786 GTTGGGACAA
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
117 3 0.03
118 61 0.66
119 29 0.31
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (119 bp):
TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATCAA
ATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGGTATAGTTTTGGT
Found at i:114436152 original size:50 final size:49
Alignment explanation
Indices: 114436098--114436227 Score: 188
Period size: 49 Copynumber: 2.6 Consensus size: 49
114436088 GAACTACTTT
* * * *
114436098 TATTTTACATAGATTAAAATAAGGTTTTTCAATCTTTACTACACTTCATC
1 TATTTGACATTGATTAGAATAAGGTTTTTCAA-CCTTACTACACTTCATC
* * *
114436148 TATTTGACATTGATGAGAATAAAGTTTTTCAACCTTAGTACACTTCATC
1 TATTTGACATTGATTAGAATAAGGTTTTTCAACCTTACTACACTTCATC
114436197 TATTTGACATTGATTAGAATAAGGTTTTTCA
1 TATTTGACATTGATTAGAATAAGGTTTTTCA
114436228 TACTATAAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 44 0.62
50 27 0.38
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (49 bp):
TATTTGACATTGATTAGAATAAGGTTTTTCAACCTTACTACACTTCATC
Found at i:114441635 original size:23 final size:22
Alignment explanation
Indices: 114441608--114441651 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
114441598 TAATTACCAA
114441608 ATTGAAAAACGAAAACTATGAAG
1 ATTG-AAAACGAAAACTATGAAG
**
114441631 ATTGAATGCGAAAACTATGAA
1 ATTGAAAACGAAAACTATGAA
114441652 AAAGATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.52, C:0.09, G:0.18, T:0.20
Consensus pattern (22 bp):
ATTGAAAACGAAAACTATGAAG
Found at i:114442666 original size:18 final size:16
Alignment explanation
Indices: 114442640--114442679 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
114442630 GAATCCTTAT
114442640 TAAAATAAAATACAATAG
1 TAAAATAAAATA-AA-AG
*
114442658 TAAAGTAAAATAAAAG
1 TAAAATAAAATAAAAG
114442674 TAAAAT
1 TAAAAT
114442680 CCATATAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (16 bp):
TAAAATAAAATAAAAG
Found at i:114451333 original size:55 final size:55
Alignment explanation
Indices: 114451221--114451335 Score: 124
Period size: 55 Copynumber: 2.1 Consensus size: 55
114451211 GATATGGACA
* *
114451221 TGGTCGAGCCTGCCAAAACAACACAGGAGTATGACACGCCCGTGTGGAAGAATTG
1 TGGTCGAGCCTGCCAAAACAACACAGGAGTATGACACGCCCGTGTGGAACAACTG
* ** * ** * *
114451276 TGGTCGAGCTTGCCAAAACAGTACAGGCGT-TCGACGTGCTCGTGTGGAACACCTG
1 TGGTCGAGCCTGCCAAAACAACACAGGAGTAT-GACACGCCCGTGTGGAACAACTG
114451331 TGGTC
1 TGGTC
114451336 AAACCTGTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
54 1 0.02
55 48 0.98
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.20
Consensus pattern (55 bp):
TGGTCGAGCCTGCCAAAACAACACAGGAGTATGACACGCCCGTGTGGAACAACTG
Found at i:114452623 original size:88 final size:88
Alignment explanation
Indices: 114452474--114452649 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
114452464 ACGATGATCC
*
114452474 CGGCACGGTCCAGTTTCGCCTAGGCGGACTAATCCGCCAGTTAAGCATCCCAGAGTTTGGTGCTG
1 CGGCACGGTCCAGTTTCGCCTAGGCGGACTAATCCGCCAGCTAAGCATCCCAGAGTTTGGTGCTG
114452539 CTCTAGGCCTATATACGGAGGAG
66 CTCTAGGCCTATATACGGAGGAG
114452562 CGGCACGGTCCAGTTTCGCCTAGGCGGACTAATCCGCCAGCTAAGCATCCCAGAGTTTGGTGCTG
1 CGGCACGGTCCAGTTTCGCCTAGGCGGACTAATCCGCCAGCTAAGCATCCCAGAGTTTGGTGCTG
114452627 CTCTAGGCCTATATACGGAGGAG
66 CTCTAGGCCTATATACGGAGGAG
114452650 TTCAGGGAGG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (88 bp):
CGGCACGGTCCAGTTTCGCCTAGGCGGACTAATCCGCCAGCTAAGCATCCCAGAGTTTGGTGCTG
CTCTAGGCCTATATACGGAGGAG
Found at i:114473897 original size:37 final size:37
Alignment explanation
Indices: 114473847--114473924 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
114473837 TATAAAAGAA
*
114473847 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCAG
114473884 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCAG
114473921 GTCT
1 GTCT
114473925 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCAG
Found at i:114474087 original size:49 final size:49
Alignment explanation
Indices: 114474027--114474149 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
114474017 CATATATTTT
*
114474027 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114474076 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114474125 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
114474150 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:114477293 original size:40 final size:41
Alignment explanation
Indices: 114477249--114477347 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
114477239 TCGATTGTTC
* * **
114477249 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
114477289 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
114477330 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
114477348 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:114477868 original size:29 final size:29
Alignment explanation
Indices: 114477831--114478372 Score: 897
Period size: 29 Copynumber: 18.7 Consensus size: 29
114477821 TGTTGAAAAA
* * *
114477831 CTCGTACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
114477860 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
114477889 TTCGCACACATAGTGCTTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
114477918 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
114477947 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114477976 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478005 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478034 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478063 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478092 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
114478121 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
114478150 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478179 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478208 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
114478237 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
114478266 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
114478295 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
114478324 CTCGCACACATAGTGCCTCGATTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
114478355 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
114478373 TAATCATTCG
Statistics
Matches: 492, Mismatches: 19, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
29 471 0.96
30 19 0.04
31 2 0.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:114480431 original size:37 final size:37
Alignment explanation
Indices: 114480381--114480458 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
114480371 TATAAAAGAA
114480381 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114480418 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114480455 GTCT
1 GTCT
114480459 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:114480621 original size:49 final size:49
Alignment explanation
Indices: 114480561--114480683 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
114480551 CATATATTTT
*
114480561 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114480610 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
114480659 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
114480684 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:114488348 original size:33 final size:33
Alignment explanation
Indices: 114488295--114488361 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
114488285 AATGTTCTCT
114488295 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
1 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
* * *
114488328 TGTAGTTTCGTTTGACACTTAGTCAAATTGGCC
1 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
114488361 T
1 T
114488362 TAAATGTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (33 bp):
TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
Found at i:114489231 original size:26 final size:27
Alignment explanation
Indices: 114489202--114489256 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
114489192 AAGATTGTTA
** *
114489202 AAATTCTTCTAAAGGAAACTC-AAGAG
1 AAATTCTTAAAAAGAAAACTCAAAGAG
114489228 AAATTCTTAAAAAGAAAACTCAAAGAG
1 AAATTCTTAAAAAGAAAACTCAAAGAG
114489255 AA
1 AA
114489257 TTTATTAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.20
Consensus pattern (27 bp):
AAATTCTTAAAAAGAAAACTCAAAGAG
Found at i:114489264 original size:27 final size:26
Alignment explanation
Indices: 114489212--114489264 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
114489202 AAATTCTTCT
* *
114489212 AAAGGAAACTCAAGAGAAATTCTTAA
1 AAAGAAAACTCAAGAGAAATTATTAA
*
114489238 AAAGAAAACTCAAAGAGAATTTATTAA
1 AAAGAAAACTC-AAGAGAAATTATTAA
114489265 CTAAAAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21
Consensus pattern (26 bp):
AAAGAAAACTCAAGAGAAATTATTAA
Found at i:114490934 original size:20 final size:20
Alignment explanation
Indices: 114490909--114490964 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
114490899 ATGAAATATT
114490909 AAATAGATTTAAAATTTATG
1 AAATAGATTTAAAATTTATG
114490929 AAATAGATTTAAAATTTATG
1 AAATAGATTTAAAATTTATG
*
114490949 AAATATATTTAAAATT
1 AAATAGATTTAAAATT
114490965 AATATTTAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (20 bp):
AAATAGATTTAAAATTTATG
Found at i:114495172 original size:25 final size:25
Alignment explanation
Indices: 114495144--114495192 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
114495134 CTCCGAGTTG
*
114495144 AATAATGGTAAGCTCATCTGAGCTA
1 AATAATGGTAAGCTCATATGAGCTA
114495169 AATAATGGTAAGCTCATATGAGCT
1 AATAATGGTAAGCTCATATGAGCT
114495193 GAGTATCGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (25 bp):
AATAATGGTAAGCTCATATGAGCTA
Found at i:114500004 original size:40 final size:40
Alignment explanation
Indices: 114499949--114500115 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
114499939 TGAATGATAC
* *
114499949 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
114499989 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * **
114500029 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCA-AT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
114500068 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
114500108 CC-GGCTAA
1 CCGGGCTAA
114500116 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 37 0.35
40 67 0.63
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:114500105 original size:79 final size:80
Alignment explanation
Indices: 114499949--114500115 Score: 214
Period size: 79 Copynumber: 2.1 Consensus size: 80
114499939 TGAATGATAC
* * **
114499949 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGCATTCG
*
114500014 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * *
114500029 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCA-ATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGC-ATTC
**
114500092 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
114500108 CC-GGCTAA
1 CCGGGCTAA
114500116 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
78 6 0.08
79 36 0.47
80 34 0.45
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:114508019 original size:40 final size:39
Alignment explanation
Indices: 114507936--114508100 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
114507926 TGAATGATAC
* * *
114507936 CCGGGCTAAGTCCCGAAGGCA--ATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTGTGCAAGTTG-TTATAT
*
114507973 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTGTTATAT
*** *
114508013 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGTTATAT
* ** *
114508053 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTTGTTATAT
114508093 CC-GGCTAA
1 CCGGGCTAA
114508101 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
37 20 0.19
39 5 0.05
40 75 0.71
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCAAGTTGTTATAT
Found at i:114514472 original size:71 final size:69
Alignment explanation
Indices: 114514278--114514540 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
114514268 TGATTAAGCC
* *
114514278 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
114514343 GAGGTAT
63 GAGGTAT
* * ** * *
114514350 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
114514414 AGGTAT
64 AGGTAT
114514420 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
114514485 AGGTAT
64 AGGTAT
* * * * *
114514491 TTTTAGTTTATGTTTTAAAT-TACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
114514541 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 19, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
68 27 0.16
69 8 0.05
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:114514585 original size:121 final size:123
Alignment explanation
Indices: 114514420--114514665 Score: 390
Period size: 121 Copynumber: 2.0 Consensus size: 123
114514410 GTTGAGGTAT
114514420 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
*
114514485 AGGTATTTT-TA-GTTTATGTTTTAAATT-ACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
114514540 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
114514605 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATT-AACTCATATTGCGAGAGGTGAGTTAAGCC
114514665 T
1 T
114514666 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
120 12 0.11
121 60 0.53
122 1 0.01
123 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (123 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:114514661 original size:72 final size:71
Alignment explanation
Indices: 114514540--114514980 Score: 306
Period size: 72 Copynumber: 6.1 Consensus size: 71
114514530 GAGTTAAGCC
*
114514540 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
114514604 TGAGGTA
65 TGAGGTA
** * *
114514611 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
114514676 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** *
114514683 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTA
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-G-GGCA
* * ***
114514742 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
114514751 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
114514815 CTGAGGTA
64 CTGAGGTA
* * ** *
114514823 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTTTGTT-T--TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
114514888 GCTGAGGTA
63 GCTGAGGTA
* ** * * **
114514897 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
114514962 GCCGAGGTA
63 GCTGAGGTA
114514971 TTTTCAATTT
1 TTTTCAATTT
114514981 CCGTTTTTCA
Statistics
Matches: 271, Mismatches: 77, Indels: 41
0.70 0.20 0.11
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 8 0.03
69 13 0.05
70 6 0.02
71 15 0.06
72 110 0.41
73 16 0.06
74 87 0.32
75 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTA
Found at i:114514963 original size:74 final size:74
Alignment explanation
Indices: 114514770--114514981 Score: 259
Period size: 74 Copynumber: 2.9 Consensus size: 74
114514760 CTACTTTTTC
* *
114514770 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
114514835 GTTGTCAAA
66 GTTGTCAAA
* * *
114514844 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
***
114514908 -TATGT-TTT
66 GT-TGTCAAA
** * * *
114514916 AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
114514981 C
64 C
114514982 CGTTTTTCAA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
72 35 0.30
73 4 0.03
74 79 0.67
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:114514990 original size:14 final size:14
Alignment explanation
Indices: 114514971--114515005 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
114514961 CGCCGAGGTA
114514971 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
114514985 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
114514999 CTTTCAA
1 TTTTCAA
114515006 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:114515019 original size:165 final size:165
Alignment explanation
Indices: 114514824--114515481 Score: 956
Period size: 165 Copynumber: 4.0 Consensus size: 165
114514814 GCTGAGGTAA
* * *
114514824 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *** *
114514887 CGCTGAGGTATTTTCAATTT-T-TATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAG
65 CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
114514949 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
114514986 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
114515051 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAG
64 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
114515116 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
114515153 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
114515218 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* * *
114515283 TCAGATCACACGTCGAGGTATTTTCAATTTCCATT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* *
114515318 TTTCAATTTCTGCCTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTCAATTTCTGCCTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * ***
114515383 CGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
65 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGC
* ** *
114515446 CTCAAG--ACACGTTGAGGTATTTTCAATTTCTGTT
130 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
114515480 TT
1 TT
114515482 CAAAAAATCA
Statistics
Matches: 457, Mismatches: 31, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
162 39 0.09
163 2 0.00
164 37 0.08
165 219 0.48
166 76 0.17
167 84 0.18
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (165 bp):
TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
Found at i:114515112 original size:74 final size:77
Alignment explanation
Indices: 114514986--114515677 Score: 348
Period size: 72 Copynumber: 8.8 Consensus size: 77
114514976 AATTTCCGTT
* *
114514986 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
*
114515050 CACGCTGAGGTAA
65 CACGCCGAGGTAA
* *
114515063 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
114515126 CACGCCGAGGTAT
65 CACGCCGAGGTAA
* * * * * * *
114515139 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGTG
1 TTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGCG
*
114515200 AGTTGAGCCTCAGG-ACACGCTGAGGTAA
49 AGTTGAGCCTCAGGCACACGCCGAGGTAA
* * * *
114515228 TTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
*
114515291 CACGTCGAGGTATTTTCAA
65 CACGCCGAGG-----T-AA
* * ** *
114515310 TTTCCATTTTTCAATTTCTGCCTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTT-CA-ATTTC--TGTCTG--TCAAAAAAA--ATCAACTCATATTGCGAGAGGCGAGTTGAGCC
* *
114515375 TC-GGGACACGCTGAGGTAA
58 TCAGGCACACGCCGAGGTAA
* * *** *
114515394 TTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-AC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
** *
114515454 ACGTTGAGGTAT
66 ACGCCGAGGTAA
* * * * * *
114515466 TTTCAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
* * *
114515527 ATGCGCTGAGCTAT
66 A--CGCCGAGGTAA
* * * * *
114515541 TTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCA
* * *
114515605 CACACTGAGGTATTT
65 CACGCCGAGGTA--A
* * * * * * *
114515620 TTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTC
114515678 GGGTTACATG
Statistics
Matches: 492, Mismatches: 69, Indels: 106
0.74 0.10 0.16
Matches are distributed among these distances:
72 61 0.12
73 35 0.07
74 61 0.12
75 22 0.04
76 49 0.10
77 61 0.12
78 4 0.01
79 60 0.12
80 2 0.00
81 1 0.00
82 9 0.02
83 4 0.01
84 9 0.02
85 1 0.00
86 4 0.01
87 5 0.01
88 4 0.01
89 34 0.07
90 16 0.03
91 18 0.04
92 32 0.07
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:114515144 original size:76 final size:76
Alignment explanation
Indices: 114514985--114515702 Score: 367
Period size: 77 Copynumber: 9.1 Consensus size: 76
114514975 CAATTTCCGT
* *
114514985 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
114515050 CACGCTGAGGTA
65 CACGCCGAGGTA
* * *
114515062 ATTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--
114515125 ACACGCCGAGGTA
64 ACACGCCGAGGTA
* * * * * * *
114515138 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGT
1 TTTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGC
*
114515199 GAGTTGAGCCTCAGGACACGCTGAGGTA
49 GAGTTGAGCCTCAGGACACGCCGAGGTA
* * * * *
114515227 ATTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG--G
*
114515290 ACACGTCGAGGTA
64 ACACGCCGAGGTA
* ** *
114515303 TTTTCAATTTCCATTTTTCAATTTCTGCCTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
1 TTTTC-A-----A--TTTC--TGTCTG--TCAAAAAAA--ATCAACTCATATTGCGAGAGGCGAG
* *
114515368 TTGAGCCTCGGGACACGCTGAGGTA
52 TTGAGCCTCAGGACACGCCGAGGTA
* * * *** *
114515393 ATTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
**
114515454 ACGTTGAGGTA
66 ACGCCGAGGTA
* * * * * *
114515465 TTTTCAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-A
* *
114515526 CATGCGCTGAGCTA
65 CA--CGCCGAGGTA
* * * *
114515540 TTTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GAT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-
*
114515603 CACACACTGAGGTA
65 CACGC-C-GAGGTA
* * * * * * * *
114515617 TTTTTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGG
1 --TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG
* *
114515681 TTACATGTCGAGGTA
64 --ACACGCCGAGGTA
114515696 TTTTCAA
1 TTTTCAA
114515703 AATCTTTTTT
Statistics
Matches: 508, Mismatches: 75, Indels: 116
0.73 0.11 0.17
Matches are distributed among these distances:
72 62 0.12
73 34 0.07
74 61 0.12
75 24 0.05
76 55 0.11
77 69 0.14
78 3 0.01
79 63 0.12
80 4 0.01
81 2 0.00
82 6 0.01
84 5 0.01
86 4 0.01
87 5 0.01
88 4 0.01
89 35 0.07
90 22 0.04
91 17 0.03
92 33 0.06
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
ACGCCGAGGTA
Found at i:114515462 original size:72 final size:73
Alignment explanation
Indices: 114515338--114515677 Score: 378
Period size: 72 Copynumber: 4.5 Consensus size: 73
114515328 TGCCTTTAAA
** *
114515338 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
114515403 CTGTTTTC
66 CTGTTTTC
* ** *
114515411 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
114515475 CTGTTTTC
66 CTGTTTTC
* * ** * *
114515483 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACA--CGCTGAGGTATTTTCAA
*
114515547 TTTCTATCTTTC
63 TTTCTGT-TTTC
* * *
114515559 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-GACACGCTGAGGTA--TTTTC
* *
114515624 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* *
114515638 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
114515678 GGGTTACATG
Statistics
Matches: 223, Mismatches: 32, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
72 66 0.30
73 34 0.15
75 21 0.09
76 4 0.02
77 43 0.19
79 54 0.24
80 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:114515642 original size:79 final size:76
Alignment explanation
Indices: 114515317--114516053 Score: 438
Period size: 87 Copynumber: 9.2 Consensus size: 76
114515307 CAATTTCCAT
** **
114515317 TTTTCAATTTCTGCCTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GG
1 TTTTCAATTTCTG--TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
114515380 ACACGCTGAGGTA
64 ACACGCTGAGGTA
* * ** *
114515393 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
*
114515454 ACGTTGAGGTA
66 ACGCTGAGGTA
* * ** * *
114515465 TTTTCAATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCAT
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* *
114515529 GCGCTGAGCTA
66 ACGCTGAGGTA
* *
114515540 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
114515605 CACACTGAGGTA
65 CACGCTGAGGTA
* * * * * *
114515617 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
* *
114515682 TACATG-TCGAGGTA
63 CACACGCT-GAGGTA
** * *
114515696 TTTTCAAAATCTTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTCTGTTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** * ** *
114515761 CCTTGGCTCACGTGCTGAGCTA
55 CCTCAGATCACACGCTGAGGTA
*
114515783 TTTTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTT
1 TTTTCAATTTCTG------TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--C
* * * * *
114515848 TTA-ATTTCTGCGAGAGTTGAGTTGA
57 TCAGA--TC-AC-A-CGCTGAGGT-A
* *
114515873 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAG-T
1 -T-TTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
**
114515935 CACA-TATCGAGGTA
63 CACACGCT-GAGGTA
**
114515949 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTG-TTTTC------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * * *
114516014 GCCTTGGCTCACGCGCTGAGCTA
54 GCCTCAGATCACACGCTGAGGTA
114516037 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
114516054 TAATGTCTGT
Statistics
Matches: 519, Mismatches: 85, Indels: 103
0.73 0.12 0.15
Matches are distributed among these distances:
72 65 0.13
73 32 0.06
74 17 0.03
75 23 0.04
76 24 0.05
77 62 0.12
78 2 0.00
79 64 0.12
80 3 0.01
82 7 0.01
83 29 0.06
84 29 0.06
85 7 0.01
86 2 0.00
87 105 0.20
88 21 0.04
89 7 0.01
90 1 0.00
91 1 0.00
92 13 0.03
93 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
ACGCTGAGGTA
Found at i:114515714 original size:13 final size:13
Alignment explanation
Indices: 114515696--114515730 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
114515686 TGTCGAGGTA
*
114515696 TTTTCAAAATCTT
1 TTTTCAAAATCTG
*
114515709 TTTTCAAATTCTG
1 TTTTCAAAATCTG
114515722 TTTTCAAAA
1 TTTTCAAAA
114515731 ATCAACTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.51
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:114515862 original size:30 final size:30
Alignment explanation
Indices: 114515826--114515887 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
114515816 CAACTCATAT
114515826 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
114515856 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
114515886 TG
1 TG
114515888 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:114515992 original size:254 final size:248
Alignment explanation
Indices: 114515477--114516054 Score: 746
Period size: 254 Copynumber: 2.3 Consensus size: 248
114515467 TTCAATTTCT
* * *
114515477 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
114515542 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
114515602 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
* * * * * **
114515667 AGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTTTTTTCAAATTCT
195 AGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCTCTTTTCAAATTAA
* *
114515721 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
114515785 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC
* * * * * * *
114515850 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG
128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
*
114515912 CGAGAGGTGAGTTGAACCTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCT-CTTTTCAAATTAA
114515975 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
114516039 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
114516055 AATGTCTGTT
Statistics
Matches: 290, Mismatches: 27, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
243 62 0.21
244 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 31 0.11
254 119 0.41
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATCTCTTTTCAAATTAA
Found at i:114516720 original size:17 final size:17
Alignment explanation
Indices: 114516700--114516736 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
114516690 AACCTAACCC
*
114516700 AAAAAAAAA-ACAAAGA
1 AAAAAAAAAGAAAAAGA
114516716 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
114516733 AAAA
1 AAAA
114516737 CTACCCCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:114516735 original size:11 final size:11
Alignment explanation
Indices: 114516703--114516736 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
114516693 CTAACCCAAA
114516703 AAAAAAACAAAG
1 AAAAAAA-AAAG
114516715 AAAAAAAAAAG
1 AAAAAAAAAAG
114516726 AAAAAGAAAAA
1 AAAAA-AAAAA
114516737 CTACCCCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:114516750 original size:15 final size:16
Alignment explanation
Indices: 114516732--114516767 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
114516722 AAAGAAAAAG
114516732 AAAAACT-ACCCCAAA
1 AAAAACTAACCCCAAA
*
114516747 AAAACCTAACCCCAAA
1 AAAAACTAACCCCAAA
114516763 AAAAA
1 AAAAA
114516768 GAAGAAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACTAACCCCAAA
Found at i:114516789 original size:23 final size:23
Alignment explanation
Indices: 114516761--114516803 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
114516751 CCTAACCCCA
*
114516761 AAAAAAAGA-AGAAAAACCTAAC
1 AAAAAAAGATAAAAAAACCTAAC
114516783 AAAAAAAGATAAAAAAACCTA
1 AAAAAAAGATAAAAAAACCTA
114516804 GCCACCTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.74, C:0.12, G:0.07, T:0.07
Consensus pattern (23 bp):
AAAAAAAGATAAAAAAACCTAAC
Found at i:114524057 original size:50 final size:50
Alignment explanation
Indices: 114523962--114524085 Score: 158
Period size: 50 Copynumber: 2.5 Consensus size: 50
114523952 GAGGTTATCG
* * * * * * *
114523962 TTATCCAACTTGTAGAAGCTTACCGATATTTAGCTCACATGAGCTTTCCA
1 TTATCCAGCTTGGAGGAGCTTACCGATATTCAACTCACATCAGCTTACCA
* *
114524012 TTATCCAGCTTGGAGGAGCTTACCGATATTCAACTCATATCAGCTTACCG
1 TTATCCAGCTTGGAGGAGCTTACCGATATTCAACTCACATCAGCTTACCA
*
114524062 TTATTCAGCTTGGAGGAGCTTACC
1 TTATCCAGCTTGGAGGAGCTTACC
114524086 AATTATCGCT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (50 bp):
TTATCCAGCTTGGAGGAGCTTACCGATATTCAACTCACATCAGCTTACCA
Found at i:114524081 original size:25 final size:25
Alignment explanation
Indices: 114524002--114524085 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
114523992 TAGCTCACAT
* * *
114524002 GAGCTTTCCATTATCCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTTGGAG
* * *** *
114524027 GAGCTTACCGATATTCAACTCATAT
1 GAGCTTACCGTTATTCAGCTTGGAG
*
114524052 CAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTTGGAG
114524077 GAGCTTACC
1 GAGCTTACC
114524086 AATTATCGCT
Statistics
Matches: 42, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTTGGAG
Found at i:114526901 original size:16 final size:16
Alignment explanation
Indices: 114526880--114526913 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
114526870 ATTGAGCTTG
114526880 GATGAGTAATCCTATT
1 GATGAGTAATCCTATT
114526896 GATGAGTAATCCTATT
1 GATGAGTAATCCTATT
114526912 GA
1 GA
114526914 CCTCATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (16 bp):
GATGAGTAATCCTATT
Found at i:114536408 original size:21 final size:21
Alignment explanation
Indices: 114536366--114536408 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
114536356 AAATAAAGTC
** * *
114536366 CAGTCCATTTACAAATACAAA
1 CAGTCCAAATACAAAAAAAAA
114536387 CAGTCCAAATACAAAAAAAAA
1 CAGTCCAAATACAAAAAAAAA
114536408 C
1 C
114536409 CCTAATGGCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.23, G:0.05, T:0.16
Consensus pattern (21 bp):
CAGTCCAAATACAAAAAAAAA
Found at i:114541563 original size:19 final size:20
Alignment explanation
Indices: 114541528--114541566 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
114541518 TTTTTGTATT
*
114541528 CATTTCATTCATCTGCATTA
1 CATTTCATTCATATGCATTA
114541548 CATTTCA-TCATATGCATTA
1 CATTTCATTCATATGCATTA
114541567 AGTTTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (20 bp):
CATTTCATTCATATGCATTA
Found at i:114542871 original size:44 final size:44
Alignment explanation
Indices: 114542811--114543110 Score: 222
Period size: 44 Copynumber: 6.6 Consensus size: 44
114542801 GAGCTTTGCT
* * * * *
114542811 ATCTTATCGCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATACAA
* * * * * * *
114542855 ACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATACAA
* * * *
114542899 ATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAGTTATAGATTAAAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT--A---A-AGA-TACAA
* * * * * *
114542950 ATTTTATCTCCCTAAAGTTGCAGTGGAGAAAATTAAAGTTACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATACAA
* *
114542994 ATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATA-CAA
* * * * * *
114543039 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAAAATAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATACAA
* * * *
114543083 ACCTTATCTTCCTAAAGTTGTAGTGGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAG
114543111 CGGGTAGAAG
Statistics
Matches: 196, Mismatches: 52, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
44 122 0.62
45 38 0.19
46 1 0.01
49 2 0.01
50 2 0.01
51 31 0.16
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGATACAA
Found at i:114542985 original size:51 final size:51
Alignment explanation
Indices: 114542897--114542995 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
114542887 TTGAAGTTAC
* * * * *
114542897 AAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTAAAGTTATAGATTAA
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAATAAATTAAAGTTACAGATTAA
*
114542948 AAATTTTATCTCCCTAAAGTTGCAGTGGAGA-AAATTAAAGTTACAGAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGA-ATAAATTAAAGTTACAGAT
114542996 CTTATCTCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAATAAATTAAAGTTACAGATTAA
Found at i:114543089 original size:89 final size:89
Alignment explanation
Indices: 114542948--114543110 Score: 211
Period size: 89 Copynumber: 1.8 Consensus size: 89
114542938 TATAGATTAA
* * * * * *
114542948 AAATTTTATCTCCCTAAAGTTGCAGTGGAGAAAATTAAAGTTACAGATCTTATCTCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAGAAAATTAAAGCTACAAACCTTATCTCCCTAAAGTT
114543013 GCAGTGGAGTGGATTGAAGATAGC
66 GCAGTGGAGTGGATTGAAGATAGC
* * * *
114543037 AAATCTTATCTCTCTGAAGTTGCAGTAGAGTAAAA-TAAAGCTATAAACCTTATCTTCCTAAAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTAGAG-AAAATTAAAGCTACAAACCTTATCTCCCTAAAGT
*
114543101 TGTAGTGGAG
65 TGCAGTGGAG
114543111 CGGGTAGAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
89 58 0.94
90 4 0.06
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (89 bp):
AAATCTTATCTCCCTAAAGTTGCAGTAGAGAAAATTAAAGCTACAAACCTTATCTCCCTAAAGTT
GCAGTGGAGTGGATTGAAGATAGC
Found at i:114544657 original size:73 final size:68
Alignment explanation
Indices: 114544580--114544848 Score: 231
Period size: 73 Copynumber: 3.8 Consensus size: 68
114544570 TATTATATTT
*
114544580 ATTTATTTATTTGTTCGTTATTCTTTTA-TCTTTCAAATATTTAAATGTAATATTATTTATAGTT
1 ATTTATTTATTT-TT--TTATTCTTTTACT-TTTAAAATATTTAAAT-TAATATTATTTATA-TT
*
114544644 GTGTTATCA
60 GTATTATCA
* * *
114544653 ATTTATTTATTTATTTTTCATTCTCTTACTTTTAAAATATTTAAATTTAATATTATGTACATT-T
1 ATTTATTTA-TT-TTTTT-ATTCTTTTACTTTTAAAATATTTAAA-TTAATATTATTTATATTGT
*
114544717 ATT-T-T
62 ATTATCA
* * * * * *
114544722 ATCTATTTACTTATTTATTCTTTTACTTTTAAAATATTTAAATTCGATATTATTCATATTTGTTT
1 ATTTATTTATTTTTTTATTCTTTTACTTTTAAAATATTTAAATT-AATATTATTTATA-TTGTAT
114544787 TATCA
64 TATCA
* ** * * *
114544792 ATTTATTTATTTATTTATTCTTTTACTTTTTTAATACTTCAATTTAATGTTATTTAT
1 ATTTATTTATTTTTTTATTCTTTTACTTTTAAAATA-TTTAAATTAATATTATTTAT
114544849 TTTATCTATT
Statistics
Matches: 160, Mismatches: 25, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
65 2 0.01
66 34 0.21
67 6 0.04
68 4 0.03
69 9 0.06
70 42 0.26
71 9 0.06
72 4 0.03
73 43 0.27
74 6 0.04
75 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.60
Consensus pattern (68 bp):
ATTTATTTATTTTTTTATTCTTTTACTTTTAAAATATTTAAATTAATATTATTTATATTGTATTA
TCA
Found at i:114544667 original size:66 final size:66
Alignment explanation
Indices: 114544597--114544806 Score: 219
Period size: 66 Copynumber: 3.1 Consensus size: 66
114544587 TATTTGTTCG
* * *
114544597 TTATTCTTTTATC-TTTCAAATATTTAAATGTAATATTATTTATAGTTGTGTTATCAATTTATTT
1 TTATTCTTTTATCTTTTAAAATATTTAAAT-TAATATTATTTATATTTGTTTTATCAATTTATTT
114544661 AT
65 AT
* * * *
114544663 TTATTTTTCATTCTCT-TACTTTTAAAATATTTAAATTTAATATTATGTACATTTATTTTATCTA
1 TTA---TTC-TT-T-TAT-CTTTTAAAATATTTAAA-TTAATATTATTTATATTTGTTTTATCAA
*
114544727 TTTACTTAT
58 TTTATTTAT
* *
114544736 TTATTCTTTTA-CTTTTAAAATATTTAAATTCGATATTATTCATATTTGTTTTATCAATTTATTT
1 TTATTCTTTTATCTTTTAAAATATTTAAATT-AATATTATTTATATTTGTTTTATCAATTTATTT
114544800 AT
65 AT
114544802 TTATT
1 TTATT
114544807 TATTCTTTTA
Statistics
Matches: 118, Mismatches: 15, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
65 2 0.02
66 53 0.45
67 1 0.01
68 1 0.01
69 5 0.04
70 5 0.04
71 2 0.02
72 2 0.02
73 46 0.39
74 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (66 bp):
TTATTCTTTTATCTTTTAAAATATTTAAATTAATATTATTTATATTTGTTTTATCAATTTATTTA
T
Found at i:114544776 original size:35 final size:33
Alignment explanation
Indices: 114544672--114544776 Score: 83
Period size: 35 Copynumber: 3.1 Consensus size: 33
114544662 TTTATTTTTC
*
114544672 ATTCTCTTACTTTTAAAATATTTAAATTTAATATT
1 ATTCTTTTACTTTTAAAATATTTAAA-TT-ATATT
* ** *
114544707 ATGTACATTTA-TTTT-ATCTATTT-ACTTAT-TT
1 AT-T-CTTTTACTTTTAAAATATTTAAATTATATT
114544738 ATTCTTTTACTTTTAAAATATTTAAATTCGATATT
1 ATTCTTTTACTTTTAAAATATTTAAATT--ATATT
114544773 ATTC
1 ATTC
114544777 ATATTTGTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
29 5 0.09
30 5 0.09
31 10 0.19
32 5 0.09
33 2 0.04
34 3 0.06
35 14 0.26
36 5 0.09
37 4 0.08
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (33 bp):
ATTCTTTTACTTTTAAAATATTTAAATTATATT
Found at i:114551251 original size:2 final size:2
Alignment explanation
Indices: 114551244--114551268 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114551234 CACTAAAGTC
114551244 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
114551269 CACACCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114553067 original size:22 final size:22
Alignment explanation
Indices: 114553036--114553077 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
114553026 AAAGATTTTA
* *
114553036 ATTTTTTTTTCTTAATTCTTTG
1 ATTTTATTTTATTAATTCTTTG
114553058 ATTTTATTTTATTAATTCTT
1 ATTTTATTTTATTAATTCTT
114553078 CGATGGCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.71
Consensus pattern (22 bp):
ATTTTATTTTATTAATTCTTTG
Found at i:114553213 original size:52 final size:52
Alignment explanation
Indices: 114553146--114553245 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
114553136 AATGGTAATT
**
114553146 AAATATTATTTAATTATTTAATTTT-AATATGTTAATTATTATGATGTTAGGA
1 AAATATTATCAAATTATTTAATTTTAAATA-GTTAATTATTATGATGTTAGGA
* *
114553198 AAATATTATCAAATTATTTAATTTTAAATAGTTAATTGTTATGTTGTT
1 AAATATTATCAAATTATTTAATTTTAAATAGTTAATTATTATGATGTT
114553246 TAGAATAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 39 0.91
53 4 0.09
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.52
Consensus pattern (52 bp):
AAATATTATCAAATTATTTAATTTTAAATAGTTAATTATTATGATGTTAGGA
Found at i:114555444 original size:2 final size:2
Alignment explanation
Indices: 114555437--114555464 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
114555427 ACTTATTTAA
114555437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114555465 CTTGTTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114557146 original size:30 final size:31
Alignment explanation
Indices: 114557102--114557161 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
114557092 CTATATTTGA
* *
114557102 AATTTAGTTATTTTATTTTTC-ATTTTAAAG
1 AATTTAATTATTTTATTTTTCGAATTTAAAG
*
114557132 AATTTAATTTTTTTATTTTTCGAATTTAAA
1 AATTTAATTATTTTATTTTTCGAATTTAAA
114557162 AATATAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (31 bp):
AATTTAATTATTTTATTTTTCGAATTTAAAG
Found at i:114557179 original size:31 final size:30
Alignment explanation
Indices: 114557114--114557179 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
114557104 TTTAGTTATT
* * **
114557114 TTATTTTTCATTTTAAAGAATTTAATTTTT
1 TTATTTTTCAATTTAAAGAATATAATTTAA
114557144 TTATTTTTCGAATTTAAA-AATATAAGTTTAA
1 TTATTTTTC-AATTTAAAGAATATAA-TTTAA
114557175 TTATT
1 TTATT
114557180 AACATTGTCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.58
Consensus pattern (30 bp):
TTATTTTTCAATTTAAAGAATATAATTTAA
Found at i:114558522 original size:16 final size:17
Alignment explanation
Indices: 114558501--114558533 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
114558491 TAAAGTTGAT
114558501 AATATACATATA-ATAA
1 AATATACATATATATAA
*
114558517 AATATATATATATATAA
1 AATATACATATATATAA
114558534 TGGGGTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AATATACATATATATAA
Found at i:114558652 original size:26 final size:26
Alignment explanation
Indices: 114558609--114558675 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
114558599 AAGAATAAAC
* *
114558609 TATATACATAATAGATTTGAAAGGAAA-
1 TATATATA-AATAGATTT-AAAAGAAAT
114558636 TATATATAAATAGATTTAAAAGAAAT
1 TATATATAAATAGATTTAAAAGAAAT
114558662 TATACATATAAATA
1 TAT--ATATAAATA
114558676 ACATGGGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 7 0.20
26 12 0.34
27 7 0.20
28 9 0.26
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (26 bp):
TATATATAAATAGATTTAAAAGAAAT
Found at i:114558872 original size:26 final size:27
Alignment explanation
Indices: 114558843--114558900 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
114558833 GCCCCCCCAA
114558843 AAAAACCTAA-CCCAAAAAAAAAAAAG
1 AAAAACCTAACCCCAAAAAAAAAAAAG
*
114558869 AAAAACCTAACCCCAAAAAAAAAGAAG
1 AAAAACCTAACCCCAAAAAAAAAAAAG
114558896 AAAAA
1 AAAAA
114558901 AGAAAAACCT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.72, C:0.19, G:0.05, T:0.03
Consensus pattern (27 bp):
AAAAACCTAACCCCAAAAAAAAAAAAG
Found at i:114558934 original size:34 final size:33
Alignment explanation
Indices: 114558856--114558935 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 33
114558846 AACCTAACCC
114558856 AAAAAAAAAAAAGAAAAACCTAACCCCAAAAAAA
1 AAAAAAAAAAAAGAAAAACCTAA-CCCAAAAAAA
* *
114558890 AAGAAGAAAAAAGAAAAACCTAA-CCAAAAAATA
1 AAAAAAAAAAAAGAAAAACCTAACCCAAAAAA-A
114558923 AAAAATAAAAAAA
1 AAAAA-AAAAAAA
114558936 CCCTAGCCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
32 8 0.20
33 5 0.12
34 27 0.68
ACGTcount: A:0.78, C:0.12, G:0.05, T:0.05
Consensus pattern (33 bp):
AAAAAAAAAAAAGAAAAACCTAACCCAAAAAAA
Found at i:114559199 original size:17 final size:17
Alignment explanation
Indices: 114559179--114559217 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
114559169 CTTAAAGGTG
*
114559179 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
114559196 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
114559213 ATTTT
1 ATTTT
114559218 TATTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:114559216 original size:6 final size:6
Alignment explanation
Indices: 114559205--114559230 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
114559195 TATTTTACTC
114559205 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
114559231 TTTCCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:114559296 original size:13 final size:13
Alignment explanation
Indices: 114559270--114559319 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
114559260 TATATACATC
114559270 ATAATAAAAA-AT
1 ATAATAAAAATAT
114559282 ATAATAAAAATAT
1 ATAATAAAAATAT
* *
114559295 ATATACAAAACAAAT
1 ATA-ATAAAA-ATAT
114559310 ATAA-AAAAAT
1 ATAATAAAAAT
114559320 TACATTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 11 0.34
13 9 0.28
14 6 0.19
15 6 0.19
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAAAAATAT
Found at i:114559765 original size:11 final size:11
Alignment explanation
Indices: 114559747--114559776 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
114559737 GTGTATATTG
114559747 TATATATTATA
1 TATATATTATA
*
114559758 TTTATATTATA
1 TATATATTATA
114559769 TATATATT
1 TATATATT
114559777 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:114564005 original size:12 final size:12
Alignment explanation
Indices: 114563984--114564020 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
114563974 AACATTTTGA
*
114563984 CATTCGTGCATT
1 CATTCATGCATT
114563996 CATTCATGCATT
1 CATTCATGCATT
114564008 CA-TCAT-CATT
1 CATTCATGCATT
114564018 CAT
1 CAT
114564021 ACATTGCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
10 6 0.26
11 4 0.17
12 13 0.57
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:114572653 original size:72 final size:73
Alignment explanation
Indices: 114572529--114573656 Score: 1386
Period size: 72 Copynumber: 15.1 Consensus size: 73
114572519 TGTCTTTAAA
114572529 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114572594 CTGTTTTC
66 CTGTTTTC
* * ** ** *
114572602 -AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114572665 CTGTTTTC
66 CTGTTTTC
*
114572673 AAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 -----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
114572738 AATTTCTGTTTTC
61 AATTTCTGTTTTC
* * * *
114572751 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAA
114572816 TTTCTGTCTTTC
63 TTTCTGT-TTTC
114572828 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
114572893 TCTGTTTTTC
65 TCTG-TTTTC
* ** ** * *
114572903 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114572967 CTGTTTTC
66 CTGTTTTC
*
114572975 AAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 ------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
114573040 CAATTTCTGTTTTC
60 CAATTTCTGTTTTC
* * ** ** * *
114573054 -AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114573118 CTGTTTTC
66 CTGTTTTC
*
114573126 AAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 ------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
114573191 CAATTTCTGTTTTC
60 CAATTTCTGTTTTC
* * * *
114573205 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAA
*
114573270 TTTTTGTCTTTC
63 TTTCTGT-TTTC
114573282 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114573347 CTGTTTTC
66 CTGTTTTC
* ** ** * * *
114573355 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGATGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
114573419 CTGTTTTC
66 CTGTTTTC
* *
114573427 AAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTAATTTCA
1 ----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCA
114573492 ATTTCTGTTTTC
62 ATTTCTGTTTTC
* ** ** *
114573504 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAACTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
*
114573568 CTGTTGTC
66 CTGTTTTC
** ** * *
114573576 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
* *
114573641 TTTTTCTTTC
65 TCTGT-TTTC
114573651 AAAAAA
1 AAAAAA
114573657 ATCAGGTGAG
Statistics
Matches: 925, Mismatches: 94, Indels: 71
0.85 0.09 0.07
Matches are distributed among these distances:
71 18 0.02
72 243 0.26
73 64 0.07
74 176 0.19
75 31 0.03
76 90 0.10
77 158 0.17
78 18 0.02
79 127 0.14
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
CTGTTTTC
Found at i:114572868 original size:151 final size:147
Alignment explanation
Indices: 114572508--114573934 Score: 1765
Period size: 149 Copynumber: 9.7 Consensus size: 147
114572498 CAATTTCCGT
* *
114572508 TTTTCAATTTTTGTCTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
*
114572573 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCC
65 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
114572638 TCAAGACACGTTGAGGTA
130 TCAAGACACGTTGAGGTA
*
114572656 -TTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TTTTCAATTTCTGTTTTC---AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* * **
114572720 ACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTG
63 ACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTG
* * *
114572785 AGCCTC-GGTTCACATGCTGAGGTA
126 AGCCTCAAG---ACACGTTGAGGTA
114572809 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
114572873 ACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
65 ACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
114572938 CTCAAGACACGTTGAGGTA
129 CTCAAGACACGTTGAGGTA
*
114572957 TTTTCAATTTCTGTTTTCAAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTCAATTTCTGTTTTC----AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
114573022 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGA
62 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
114573087 GCCTCAAGACACGTTGAGGTA
127 GCCTCAAGACACGTTGAGGTA
*
114573108 TTTTCAATTTCTGTTTTCAAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTCAATTTCTGTTTTC----AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * **
114573173 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTT
62 GACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTT
* * *
114573238 GAGCCTC-GGTTCACATGCTGAGGTA
125 GAGCCTCAAG---ACACGTTGAGGTA
*
114573263 TTTTCAATTTTTGTCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
114573326 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
65 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
*
114573391 TCAAGACACGTTGATGTA
130 TCAAGACACGTTGAGGTA
* *
114573409 TTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGA
1 TTTTCAATTTCTGTTTTC--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
114573474 CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
64 CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGC
*
114573539 CTCAAGACACGCTGAGGTA
129 CTCAAGACACGTTGAGGTA
** * ** **
114573558 ACTTCAATTTCTGTTGTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
* * * * * *
114573622 TGCTGAGGTATTTTCAATTTTTTTCTTTC-AAA---AA---A-A-T-C-AG--GTGAGTTGAGGC
66 CGCTGAGGTAATTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
** *
114573674 TCGGGACACGCTGAGGTA
130 TCAAGACACGTTGAGGTA
* * * ** **
114573692 ATTTCAATTTCTGATTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
* * * * **
114573754 CGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTCTGTTTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTG
** *
114573819 AGCCTCGGGACACGCTGAGGTA
126 AGCCTCAAGACACGTTGAGGTA
* * ** **
114573841 ATTTCAATTTCTGTTTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
* *
114573903 CGTTGA-GTATTTTCAATTTCTGTCTTTCAAAA
66 CGCTGAGGTAATTTCAATTTCTGT-TTTCAAAA
114573935 AAAAAAAAAA
Statistics
Matches: 1162, Mismatches: 69, Indels: 100
0.87 0.05 0.08
Matches are distributed among these distances:
131 4 0.00
132 63 0.05
134 41 0.04
136 2 0.00
137 4 0.00
138 1 0.00
139 1 0.00
140 3 0.00
143 3 0.00
144 5 0.00
145 5 0.00
146 92 0.08
147 22 0.02
148 76 0.07
149 313 0.27
150 107 0.09
151 257 0.22
152 74 0.06
153 44 0.04
154 13 0.01
155 28 0.02
156 4 0.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
CGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
CAAGACACGTTGAGGTA
Found at i:114573768 original size:132 final size:132
Alignment explanation
Indices: 114573529--114573788 Score: 398
Period size: 132 Copynumber: 2.0 Consensus size: 132
114573519 TTGCGAGAAA
114573529 TGAGTTGAGCCTCAAGACACGCTGAGGTAACTTCAATTTCTGTTGTCAAAAAAATCAACTCATAT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAACTTCAATTTCTGTTGTC-AAAAAATCAACTCATAT
* * *
114573594 TGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTTTCTTTCAAAAAAAT
65 TGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAAT
114573659 CAGG
129 CAGG
* ** * *
114573663 TGAGTTGAGGCTCGGGACACGCTGAGGTAATTTCAATTTCTGATT-TC-AAAATTCAACTCATAT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAACTTCAATTTCTG-TTGTCAAAAAATCAACTCATAT
*
114573726 TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAA
65 TGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAA
114573789 AAATCAACTT
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
131 11 0.09
132 63 0.54
134 40 0.34
135 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (132 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTAACTTCAATTTCTGTTGTCAAAAAATCAACTCATATT
GCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCA
GG
Found at i:114573782 original size:72 final size:72
Alignment explanation
Indices: 114573663--114573934 Score: 357
Period size: 72 Copynumber: 3.7 Consensus size: 72
114573653 AAAAATCAGG
* ** *
114573663 TGAGTTGAGGCTCGGGACACGCTGAGGTAATTTCAATTTCTGATTTCAAAATTCAACTCATATTG
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
114573728 CGAGAAA
66 CGAGAAA
* * * *
114573735 TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC-----AAAATTCAACTCA
**
114573800 TATTGCGAGAGG
61 TATTGCGAGAAA
**
114573812 TGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
114573877 CGAGAAA
66 CGAGAAA
* *
114573884 TGAGTTGAGCCTCAAGACACGTTGA-GTATTTTCAATTTCTGTCTTTCAAAA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT-TTTCAAAA
114573935 AAAAAAAAAA
Statistics
Matches: 172, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
71 16 0.09
72 92 0.53
77 64 0.37
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTG
CGAGAAA
Found at i:114573876 original size:149 final size:150
Alignment explanation
Indices: 114573660--114573975 Score: 537
Period size: 149 Copynumber: 2.1 Consensus size: 150
114573650 CAAAAAAATC
*
114573660 AGGTGAGTTGAGGCTCGGGACACGCTGAGGTAATTTCAATTTCTGATTTCAAAATTCAACTCATA
1 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGATTTCAAAATTCAACTCATA
114573725 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGT-TTTC-AAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-GTATTTTCAATTTCTGTCTTTCAAAAAAA
*
114573788 AAAATCAACTTATATTGCGAG
130 AAAATCAACTCATATTGCGAG
*
114573809 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGATTTCAAAATTCAACTCATA
114573874 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTATTTTCAATTTCTGTCTTTCAAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTATTTTCAATTTCTGTCTTTC----AAAA
114573939 AAAAAAATCAACTCATATTGCGAG
127 AAAAAAATCAACTCATATTGCGAG
*
114573963 ATGTGAGTTGAGC
1 AGGTGAGTTGAGC
114573976 TTCAGATCAC
Statistics
Matches: 157, Mismatches: 4, Indels: 7
0.93 0.02 0.04
Matches are distributed among these distances:
148 17 0.11
149 102 0.65
154 38 0.24
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (150 bp):
AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGATTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTATTTTCAATTTCTGTCTTTCAAAAAAAA
AAATCAACTCATATTGCGAG
Found at i:114573921 original size:77 final size:77
Alignment explanation
Indices: 114573691--114573922 Score: 269
Period size: 77 Copynumber: 3.1 Consensus size: 77
114573681 ACGCTGAGGT
114573691 AATTTCAATTTCTGATTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 AATTTCAATTTCTGATTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
114573756 TTGAGGTATTTTC
66 TTGA-GTATTTTC
** * **** * * ** **
114573769 AATTTCTGTTT-TCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 AATTTCAATTTCTGATTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
114573833 CTGAG----GT-
66 TTGAGTATTTTC
*
114573840 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 AATTTCAATTTCTGATTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
114573905 TTGAGTATTTTC
66 TTGAGTATTTTC
114573917 AATTTC
1 AATTTC
114573923 TGTCTTTCAA
Statistics
Matches: 117, Mismatches: 31, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
71 9 0.08
72 46 0.39
76 2 0.02
77 51 0.44
78 9 0.08
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (77 bp):
AATTTCAATTTCTGATTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGTATTTTC
Found at i:114574780 original size:31 final size:32
Alignment explanation
Indices: 114574742--114574837 Score: 149
Period size: 33 Copynumber: 3.0 Consensus size: 32
114574732 AGCCCCCCAA
114574742 AAAAACCTAACCCAAAAAAAAAAA-AAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
114574773 AAAAACCTAACCCAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAA-AAGAAAAAAG
* *
114574806 AAAAACCTAACCAAAAAATAAAAAATAAAAAA
1 AAAAACCTAACCCAAAAA-AAAAAAGAAAAAA
114574838 ACCCTAGCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
31 22 0.37
32 2 0.03
33 32 0.53
34 4 0.07
ACGTcount: A:0.76, C:0.15, G:0.04, T:0.05
Consensus pattern (32 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
Found at i:114575094 original size:15 final size:15
Alignment explanation
Indices: 114575039--114575095 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
114575029 CTAAAGGTGA
*
114575039 TTTTATCTTCTTTATTA
1 TTTTA-CTT-TTTATTT
*
114575056 TTTTAC-TCTTATTT
1 TTTTACTTTTTATTT
*
114575070 TTTTATTTTTTATTT
1 TTTTACTTTTTATTT
*
114575085 TTTTCCTTTTT
1 TTTTACTTTTT
114575096 TCGAATCTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 10 0.30
15 17 0.52
16 1 0.03
17 5 0.15
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTACTTTTTATTT
Found at i:114575151 original size:13 final size:13
Alignment explanation
Indices: 114575125--114575174 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
114575115 TATATACATC
114575125 ATAATAAAAA-AT
1 ATAATAAAAATAT
114575137 ATAATAAAAATAT
1 ATAATAAAAATAT
* *
114575150 ATATACAAAACAAAT
1 ATA-ATAAAA-ATAT
114575165 ATAA-AAAAAT
1 ATAATAAAAAT
114575175 TACATTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 11 0.34
13 9 0.28
14 6 0.19
15 6 0.19
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAAAAATAT
Found at i:114575640 original size:20 final size:20
Alignment explanation
Indices: 114575602--114575640 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
114575592 GTGTATATTG
*
114575602 TATATATTATTTATATTATA
1 TATATATTATTAATATTATA
* *
114575622 TATATATTCTTAATGTTAT
1 TATATATTATTAATATTAT
114575641 TAGTTGTATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TATATATTATTAATATTATA
Found at i:114578521 original size:26 final size:26
Alignment explanation
Indices: 114578485--114578620 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
114578475 TGATACAAAT
*
114578485 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
114578511 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
114578537 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
114578563 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
114578589 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
114578615 TGATAA
1 TGATAA
114578621 GAATTTCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:114580083 original size:28 final size:26
Alignment explanation
Indices: 114580041--114580115 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
114580031 AAAAGTAGCT
* *
114580041 AAATTACTATAATACCCCTATGTATGAA
1 AAATTACTGTTATACCCCTA-G-ATGAA
* *
114580069 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGAA
*
114580095 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
114580116 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGAA
Found at i:114580260 original size:27 final size:27
Alignment explanation
Indices: 114580219--114580331 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
114580209 GAGGAAGCGT
*
114580219 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
114580246 TCTGGTGGCTCTGCCACAAATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
114580273 TCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
114580301 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
114580327 TCTGG
1 TCTGG
114580332 CAACCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 56 0.75
28 14 0.19
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:114580324 original size:54 final size:54
Alignment explanation
Indices: 114580217--114580331 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
114580207 TGGAGGAAGC
* *
114580217 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
* * * * *
114580271 GTTCTGGTGGCCCTGCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCT
1 GTTCTGGTGGCCATGCCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
114580325 GTTCTGG
1 GTTCTGG
114580332 CAACCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 37 0.70
55 16 0.30
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:114586539 original size:3 final size:3
Alignment explanation
Indices: 114586531--114586581 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
114586521 TGTTATTTCT
114586531 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
114586579 TAA
1 TAA
114586582 AGTAGCAGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:114587173 original size:30 final size:30
Alignment explanation
Indices: 114587124--114587188 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
114587114 ACTCAGTGTG
* *
114587124 CAATCATATACACAAACTTTAATTTT-ATT
1 CAATTATATACAAAAACTTTAATTTTGATT
114587153 CAATTATATACATAAAACTTTAATTTTGATT
1 CAATTATATACA-AAAACTTTAATTTTGATT
114587184 CAATT
1 CAATT
114587189 TTCCCGTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 11 0.34
30 13 0.41
31 8 0.25
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.43
Consensus pattern (30 bp):
CAATTATATACAAAAACTTTAATTTTGATT
Found at i:114595531 original size:27 final size:27
Alignment explanation
Indices: 114595483--114595546 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
114595473 GGCAAAACAG
* * * * *
114595483 TCATTTTACCCTATAGGGGTATTTCGT
1 TCATTTTACACTACAAGAGTATTTCGA
114595510 TCATTTTACACTACAAGAGTATTTCGA
1 TCATTTTACACTACAAGAGTATTTCGA
*
114595537 TAATTTTACA
1 TCATTTTACA
114595547 AATCGAGGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (27 bp):
TCATTTTACACTACAAGAGTATTTCGA
Found at i:114595561 original size:27 final size:27
Alignment explanation
Indices: 114595531--114595785 Score: 269
Period size: 27 Copynumber: 9.4 Consensus size: 27
114595521 TACAAGAGTA
* *
114595531 TTTCGATAATTTTACAAATCGAGGCTG
1 TTTCGGTAATTTTACAAATCGAGGGTG
* *
114595558 TTTCGGTAATTTTACAAATTGAGGGTA
1 TTTCGGTAATTTTACAAATCGAGGGTG
**
114595585 TTTCGGTAATTTTACAAATTAAGGGTG
1 TTTCGGTAATTTTACAAATCGAGGGTG
* * *
114595612 TTTCGATAATTTTACAAATCGAAGGTA
1 TTTCGGTAATTTTACAAATCGAGGGTG
114595639 TTTCGGTAATTTTACAAATCGAGGGTG
1 TTTCGGTAATTTTACAAATCGAGGGTG
* * **
114595666 TTTAGGTAATTTCACAAATTAAGGGTG
1 TTTCGGTAATTTTACAAATCGAGGGTG
** * *
114595693 TTTTTGTAATTTTACAAATTGAAGGTG
1 TTTCGGTAATTTTACAAATCGAGGGTG
** * * *
114595720 TTTCAATAATTTCACAAATCGGGGGTAC
1 TTTCGGTAATTTTACAAATCGAGGGT-G
* * *
114595748 TTT-GGTAATTTTACAAACCGGGGGTA
1 TTTCGGTAATTTTACAAATCGAGGGTG
114595774 TTTCGGTAATTT
1 TTTCGGTAATTT
114595786 CTCTTTATTA
Statistics
Matches: 190, Mismatches: 36, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
26 3 0.02
27 184 0.97
28 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTCGGTAATTTTACAAATCGAGGGTG
Found at i:114595620 original size:81 final size:81
Alignment explanation
Indices: 114595531--114595764 Score: 321
Period size: 81 Copynumber: 2.9 Consensus size: 81
114595521 TACAAGAGTA
*
114595531 TTTCGATAATTTTACAAATCG-AGGCTGTTTCGGTAATTTTACAAATTGAGGGTATTTCGGTAAT
1 TTTCGATAATTTTACAAATCGAAGG-TGTTTCGGTAATTTTACAAATCGAGGGTATTT-GGTAAT
114595595 TTTACAAATTAAGGGTG-
64 TTTACAAATTAAGGGTGT
* *
114595612 TTTCGATAATTTTACAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTAGGTAATT
1 TTTCGATAATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATCGAGGGTATTT-GGTAATT
*
114595677 TCACAAATTAAGGGTGT
65 TTACAAATTAAGGGTGT
* * ** * *
114595694 TTTTG-TAATTTTACAAATTGAAGGTGTTTCAATAATTTCACAAATCGGGGGTACTTTGGTAATT
1 TTTCGATAATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATCGAGGGTA-TTTGGTAATT
114595758 TTACAAA
65 TTACAAA
114595765 CCGGGGGTAT
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
81 126 0.93
82 10 0.07
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
TTTCGATAATTTTACAAATCGAAGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTGGTAATTT
TACAAATTAAGGGTGT
Found at i:114596099 original size:28 final size:28
Alignment explanation
Indices: 114596068--114596146 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
114596058 GCCCAAGTCG
* *
114596068 TTCACATGGCCTATCAGGCCTAATCACA
1 TTCACATGGCCCATCAGGCCCAATCACA
* *
114596096 TTCATATGGCCCATCAGGCCCAGTCACA
1 TTCACATGGCCCATCAGGCCCAATCACA
* * * *
114596124 TTCATACGACCCATCAAGCCCAA
1 TTCACATGGCCCATCAGGCCCAA
114596147 CTCCTTCCCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (28 bp):
TTCACATGGCCCATCAGGCCCAATCACA
Found at i:114611906 original size:46 final size:45
Alignment explanation
Indices: 114611763--114611906 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
114611753 CCCGCCCATA
* *
114611763 AGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
114611812 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
114611855 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
114611902 AGTGA
1 AGTGA
114611907 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 28 0.35
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:114616187 original size:120 final size:120
Alignment explanation
Indices: 114615968--114616200 Score: 412
Period size: 120 Copynumber: 1.9 Consensus size: 120
114615958 AAAAATGCTC
114615968 TGTAACATCCCGAAATAGGGCCTAGTCAGAATAGTGGTTTCGGAACCACAAATCTGACATCAAAA
1 TGTAACATCCCGAAATAGGGCCTAGTCAGAATAGTGGTTTCGGAACCACAAATCTGACATCAAAA
* *
114616033 TATTTATTTTATGATTAATATGAGGCCTAGAATATGAGTATATGCATGGGAGAAA
66 TATTTATTTTATGATTAATATGAGGCCTAAAATATGAGTATATACATGGGAGAAA
* * *
114616088 TGTAACATCGCGACATAGGGCCTAGTCAGAATAGTGGTTTCGGGACCACAAATCTGACATCAAAA
1 TGTAACATCCCGAAATAGGGCCTAGTCAGAATAGTGGTTTCGGAACCACAAATCTGACATCAAAA
*
114616153 TATTTATTTTATGATTAATATGAGGCTTAAAATATGAGTATATACATG
66 TATTTATTTTATGATTAATATGAGGCCTAAAATATGAGTATATACATG
114616201 TGTTAAAGTT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 107 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (120 bp):
TGTAACATCCCGAAATAGGGCCTAGTCAGAATAGTGGTTTCGGAACCACAAATCTGACATCAAAA
TATTTATTTTATGATTAATATGAGGCCTAAAATATGAGTATATACATGGGAGAAA
Found at i:114629480 original size:29 final size:29
Alignment explanation
Indices: 114629425--114629539 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
114629415 GTGAGCATGA
* *
114629425 ATATGAATGTGAC-TGGGCCTAACGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
114629453 ATATAAATGTGACTTGGGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* * * * *
114629482 ATATACAGGTGATTTGGGCCTAATTGGTC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* *
114629511 ATATGAATGTGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
114629539 A
1 A
114629540 GATACAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 26 0.36
29 47 0.64
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGACTTGGGCCTAATGGGCC
Found at i:114629545 original size:57 final size:58
Alignment explanation
Indices: 114629438--114629548 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
114629428 TGAATGTGAC
*
114629438 TGGGCCTAACGGGCCATATAAATGTGACTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATGTGACTTGGGCCTAATGGGCCAGATACAGGTGATT
** * * *
114629496 TGGGCCTAATTGGTCATATGAATGTGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATGTGACTTGGGCCTAATGGGCCAGATACAGGT
114629549 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATGTGACTTGGGCCTAATGGGCCAGATACAGGTGATT
Done.