Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 399 of 444
Found at i:115923458 original size:26 final size:26
Alignment explanation
Indices: 115923429--115923478 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
115923419 TACAGTTTTA
115923429 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
115923455 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
115923479 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:115925096 original size:12 final size:12
Alignment explanation
Indices: 115925079--115925121 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
115925069 ACTCGGGGAA
115925079 GAGGCCGTGGTC
1 GAGGCCGTGGTC
115925091 GAGGCCGTGGTC
1 GAGGCCGTGGTC
115925103 GAGGCCGTGGTC
1 GAGGCCGTGGTC
115925115 GAGGCCG
1 GAGGCCG
115925122 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:115929961 original size:32 final size:32
Alignment explanation
Indices: 115929925--115929990 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
115929915 TGTATGCATT
115929925 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
115929957 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
115929989 TT
1 TT
115929991 GTAAGCATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:115931502 original size:26 final size:26
Alignment explanation
Indices: 115931473--115931525 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
115931463 TTTACAGTTT
*
115931473 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
115931499 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
115931525 T
1 T
115931526 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:115944365 original size:31 final size:31
Alignment explanation
Indices: 115944327--115944390 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
115944317 AATCGAAATG
115944327 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
1 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
115944358 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
1 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
115944389 CC
1 CC
115944391 GAAGCCAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.12, C:0.44, G:0.12, T:0.31
Consensus pattern (31 bp):
CCTGTTCCATTTCCTACCTGCCATCGTAGCC
Found at i:115953189 original size:28 final size:28
Alignment explanation
Indices: 115953146--115953202 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
115953136 TGTAAGAAAT
* *
115953146 TATTAATAATATTATTCAAATCATAATA
1 TATTAATAATAATATTCAAACCATAATA
*
115953174 TATTAATAATAATATTCAAACCATGATA
1 TATTAATAATAATATTCAAACCATAATA
115953202 T
1 T
115953203 TTTTTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (28 bp):
TATTAATAATAATATTCAAACCATAATA
Found at i:115953230 original size:15 final size:15
Alignment explanation
Indices: 115953210--115953241 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
115953200 TATTTTTTAT
*
115953210 TATTTTAATATTAAA
1 TATTTTAAAATTAAA
115953225 TATTTTAAAATTAAA
1 TATTTTAAAATTAAA
115953240 TA
1 TA
115953242 ATATTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTTAAAATTAAA
Found at i:115955260 original size:44 final size:44
Alignment explanation
Indices: 115955194--115955281 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
115955184 TATATATAAG
* * * * *
115955194 GCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 GCATCTGAACTCATTGAATTGGTCCAAGTTCATAATGGATGCGA
115955238 GCATCTGAACTCATTGAATTGGTCCAAGTTCATAATGGATGCGA
1 GCATCTGAACTCATTGAATTGGTCCAAGTTCATAATGGATGCGA
115955282 TACATGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (44 bp):
GCATCTGAACTCATTGAATTGGTCCAAGTTCATAATGGATGCGA
Found at i:115957287 original size:19 final size:21
Alignment explanation
Indices: 115957263--115957315 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
115957253 CGGCCTGAGG
115957263 ACACGGGCGTGTCCTAG-G-C
1 ACACGGGCGTGTCCTAGTGCC
* *
115957282 ACACGGGTGTGTCCTTGTGCTC
1 ACACGGGCGTGTCCTAGTGC-C
115957304 ACACGGGCGTGT
1 ACACGGGCGTGT
115957316 GACCCTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 15 0.54
20 1 0.04
22 12 0.43
ACGTcount: A:0.13, C:0.28, G:0.36, T:0.23
Consensus pattern (21 bp):
ACACGGGCGTGTCCTAGTGCC
Found at i:115958501 original size:28 final size:27
Alignment explanation
Indices: 115958470--115958538 Score: 66
Period size: 29 Copynumber: 2.5 Consensus size: 27
115958460 TAAAAAAATC
115958470 AAAATTATTTAAAATGTATAAAATTATA
1 AAAATTATTTAAAATGTATAAAATTA-A
* * * * *
115958498 AAAATATTTTTAATATTTTTAAATTTAA
1 AAAAT-TATTTAAAATGTATAAAATTAA
*
115958526 AAAATTAATTAAA
1 AAAATTATTTAAA
115958539 TATATATATT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 5 0.16
28 11 0.34
29 16 0.50
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (27 bp):
AAAATTATTTAAAATGTATAAAATTAA
Found at i:115958885 original size:71 final size:71
Alignment explanation
Indices: 115958790--115958934 Score: 247
Period size: 71 Copynumber: 2.0 Consensus size: 71
115958780 TTTGTCTAAA
* *
115958790 TTTTCTTTATAACTTTTTTATATGTTAAATATTAATTCAATTTTAAATAAATTATTTTTTTTATT
1 TTTTCTTTATAACTTTTTTATATGTTAAATATTAACTCAATTTTAAATAAATTA-TCTTTTTATT
115958855 TTAATAT
65 TTAATAT
*
115958862 TTTTCTTTATAA-TTTTTTATATGTTAAATATTAACTCGATTTTAAATAAATTATCTTTTTATTT
1 TTTTCTTTATAACTTTTTTATATGTTAAATATTAACTCAATTTTAAATAAATTATCTTTTTATTT
115958926 TAATAT
66 TAATAT
115958932 TTT
1 TTT
115958935 ACTTACTTGA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
70 19 0.27
71 39 0.56
72 12 0.17
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (71 bp):
TTTTCTTTATAACTTTTTTATATGTTAAATATTAACTCAATTTTAAATAAATTATCTTTTTATTT
TAATAT
Found at i:115959291 original size:16 final size:16
Alignment explanation
Indices: 115959270--115959341 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
115959260 TTTTGTATTA
115959270 TTTTAATATTAAATAT
1 TTTTAATATTAAATAT
* *
115959286 TTTTAAAATTAAATAA
1 TTTTAATATTAAATAT
** *
115959302 CATTAATA-TAACTGAT
1 TTTTAATATTAAAT-AT
*
115959318 TTTAAATTAGTTAAATAT
1 TTTTAA-TA-TTAAATAT
115959336 TTTTAA
1 TTTTAA
115959342 AAGTATTTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
15 4 0.10
16 23 0.57
17 2 0.05
18 7 0.17
19 4 0.10
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (16 bp):
TTTTAATATTAAATAT
Found at i:115973977 original size:61 final size:62
Alignment explanation
Indices: 115973902--115974020 Score: 222
Period size: 61 Copynumber: 1.9 Consensus size: 62
115973892 GTGTGTCTAA
*
115973902 GCCGTGTAACTCACTAACTTGTTTAACTAAGATTCAGGGTCACACGGTTGAG-CACACAGGC
1 GCCGTGTAACTCACTAACTTGTTTAACTAAGATTCAGGGTCACACGGTCGAGTCACACAGGC
115973963 GCCGTGTAACTCACTAACTTGTTTAACTAAGATTCAGGGTCACACGGTCGAGTCACAC
1 GCCGTGTAACTCACTAACTTGTTTAACTAAGATTCAGGGTCACACGGTCGAGTCACAC
115974021 GCCTGTGTGC
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
61 51 0.91
62 5 0.09
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (62 bp):
GCCGTGTAACTCACTAACTTGTTTAACTAAGATTCAGGGTCACACGGTCGAGTCACACAGGC
Found at i:115974911 original size:46 final size:46
Alignment explanation
Indices: 115974858--115974951 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
115974848 TTTTCAGTAC
115974858 TTGTATAAATCTCATACGTACCTGAGTTACTTAACTCATTTACACA
1 TTGTATAAATCTCATACGTACCTGAGTTACTTAACTCATTTACACA
*
115974904 TTGTATAAATCTCATACGTACCTGAGTTGCTTAACTCATTTACACA
1 TTGTATAAATCTCATACGTACCTGAGTTACTTAACTCATTTACACA
115974950 TT
1 TT
115974952 CTTCCTCTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (46 bp):
TTGTATAAATCTCATACGTACCTGAGTTACTTAACTCATTTACACA
Found at i:115975091 original size:43 final size:43
Alignment explanation
Indices: 115975028--115975200 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
115975018 AGCTCATACA
* * * *
115975028 ATGCC-ATATCCCAGATATGGTCTTATATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * * * *
115975070 ATGCCAACGGCCCAGACATGGTTTTACACGGAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
*
115975113 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
* * *
115975156 ATGTCAATGTCCCAGATATGGTCTTA-ATTGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGTAATCACATATCG
115975199 AT
1 AT
115975201 AATCCTAATG
Statistics
Matches: 104, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
42 7 0.07
43 96 0.92
44 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:115986232 original size:41 final size:41
Alignment explanation
Indices: 115986206--115986406 Score: 249
Period size: 41 Copynumber: 4.9 Consensus size: 41
115986196 TGCAAAAAGC
* *
115986206 AAAGCAATAGCGGCATGTTTCTCATAAACGCGACAAAAGGT
1 AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAAAGGT
*
115986247 AAAGCAATAGCGGCATTTTTCTTATAAACGCCACAAAAGGT
1 AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAAAGGT
* * **
115986288 AAAGCAATAACGGTATTTTTCTCATAAATTCCACAAAAGGT
1 AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAAAGGT
* * * * *
115986329 AAAGCAATAGCGGCGTTTTTCCCATAAACGCCGCGAAAGTT
1 AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAAAGGT
* * * * *
115986370 AAAACAATAGCGGCTTTTTTCCCATACACGCCGCAAA
1 AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAA
115986407 TATTTTTTAC
Statistics
Matches: 139, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 139 1.00
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (41 bp):
AAAGCAATAGCGGCATTTTTCTCATAAACGCCACAAAAGGT
Found at i:115986284 original size:82 final size:82
Alignment explanation
Indices: 115986176--115986360 Score: 228
Period size: 82 Copynumber: 2.3 Consensus size: 82
115986166 AAATCATTAA
* * ** * *
115986176 CGGCATTTTT-GCATAAACTCTGCAAAAAGCAAAGCAATAGCGGCATGTTTCTCATAAACGCGAC
1 CGGCATTTTTCCCATAAACGCCACAAAAAGCAAAGCAATAACGGCATGTTTCTCATAAACGCCAC
115986240 AAAAGGTAAAGCAATAG
66 AAAAGGTAAAGCAATAG
** * * * * **
115986257 CGGCATTTTTCTTATAAACGCCACAAAAGGTAAAGCAATAACGGTATTTTTCTCATAAATTCCAC
1 CGGCATTTTTCCCATAAACGCCACAAAAAGCAAAGCAATAACGGCATGTTTCTCATAAACGCCAC
115986322 AAAAGGTAAAGCAATAG
66 AAAAGGTAAAGCAATAG
*
115986339 CGGCGTTTTTCCCATAAACGCC
1 CGGCATTTTTCCCATAAACGCC
115986361 GCGAAAGTTA
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 10 0.11
82 77 0.89
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (82 bp):
CGGCATTTTTCCCATAAACGCCACAAAAAGCAAAGCAATAACGGCATGTTTCTCATAAACGCCAC
AAAAGGTAAAGCAATAG
Found at i:115989768 original size:42 final size:42
Alignment explanation
Indices: 115989709--115989830 Score: 136
Period size: 42 Copynumber: 2.9 Consensus size: 42
115989699 TAGGGTTAGT
115989709 TGAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATA
* * * *
115989751 TGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATA
1 TGAGATTACGTGTAAGACCATATTTGGGATA-TGGCATCGATA
* ** * * * *
115989794 TAAGATCCCATTTAAGACCATATCTGTGATATGGCAT
1 TGAGATTACGTGTAAGACCATATTTGGGATATGGCAT
115989831 TGGTATAGTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 34 0.52
43 32 0.48
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.33
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATA
Found at i:115989810 original size:43 final size:42
Alignment explanation
Indices: 115989719--115989830 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
115989709 TGAGATTACG
* * ** *
115989719 TGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATAGTTGGGATATGGCATCGATATAAGATCCCA
* *
115989761 TGTAAGACCATAGTTGGGCTATTGGCATTGATATAAGATCCCA
1 TGTAAGACCATAGTTGGGATA-TGGCATCGATATAAGATCCCA
* *
115989804 TTTAAGACCATA-TCTGTGATATGGCAT
1 TGTAAGACCATAGT-TGGGATATGGCAT
115989831 TGGTATAGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATAGTTGGGATATGGCATCGATATAAGATCCCA
Found at i:115997302 original size:42 final size:42
Alignment explanation
Indices: 115997243--115997360 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
115997233 TAGGGTTAGT
*
115997243 TGAGATTACGTGTAAGACCATATTTGGGATATGACATCGATA
1 TGAGATTTCGTGTAAGACCATATTTGGGATATGACATCGATA
* * * *
115997285 TGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATA
1 TGAGATTTCGTGTAAGACCATATTTGGGATA-TGACATCGATA
* * * *
115997328 TGAGATCTCATGTAAGACCATATCTAGGATATG
1 TGAGATTTCGTGTAAGACCATATTTGGGATATG
115997361 GTATTGGTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATTTGGGATATGACATCGATA
Found at i:115998904 original size:25 final size:25
Alignment explanation
Indices: 115998870--115998920 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
115998860 CCTTGATAGG
115998870 TAGTTTCTTATCTTCAAATATTTGT
1 TAGTTTCTTATCTTCAAATATTTGT
115998895 TAGTTTCTTATCTTCAAATATTTGT
1 TAGTTTCTTATCTTCAAATATTTGT
115998920 T
1 T
115998921 CATAGTTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.57
Consensus pattern (25 bp):
TAGTTTCTTATCTTCAAATATTTGT
Found at i:116002606 original size:27 final size:28
Alignment explanation
Indices: 116002561--116002614 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
116002551 ATAAAGCTTT
*
116002561 AAATAATTATTATTTTTTTTAATTTTAA
1 AAATAATTATTATTTTTTTTAAATTTAA
116002589 AAATAA-TATT-TTATTTTTTAAATTTA
1 AAATAATTATTATT-TTTTTTAAATTTA
116002615 TATATTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 2 0.08
27 16 0.67
28 6 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
AAATAATTATTATTTTTTTTAAATTTAA
Found at i:116002783 original size:21 final size:22
Alignment explanation
Indices: 116002742--116002784 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
116002732 AAACATAAAC
* *
116002742 TTTTTATTATTATTGATTGAAA
1 TTTTTATTACTATTGAATGAAA
116002764 TTTTTATTACTA-TGAATGAAA
1 TTTTTATTACTATTGAATGAAA
116002785 ACAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (22 bp):
TTTTTATTACTATTGAATGAAA
Found at i:116002860 original size:22 final size:23
Alignment explanation
Indices: 116002829--116002877 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
116002819 ATTGTAATTA
116002829 TTTTTAAAAT-TTTATTAACTATG
1 TTTTTAAAATGTTT-TTAACTATG
*
116002852 TTTTT-AAATGTTTTTAATTATG
1 TTTTTAAAATGTTTTTAACTATG
116002874 TTTT
1 TTTT
116002878 GACAATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (23 bp):
TTTTTAAAATGTTTTTAACTATG
Found at i:116003711 original size:136 final size:137
Alignment explanation
Indices: 116003440--116003717 Score: 436
Period size: 136 Copynumber: 2.0 Consensus size: 137
116003430 AAAATACTTT
* *
116003440 TTTACTTTTAATTAATAATTTTAACATATTTGTAATTAAGCACAAAGAAAAAAAAAAGAATGGAA
1 TTTAGTTTTAATTAATAATTTTAACATATTTATAATTAAGCACAAAGAAAAAAAAAAGAATGGAA
* * *
116003505 AGTTCTATGTTATTAGAAGGTGAAAAAGTAATTAAGCACCAAAAGTGCTTTTGATAGGGGAAAAA
66 AGTTCTATGTTATTAGAAGGTGAAAAAGTAATTAAACACCAAAAGTACTTTTGATAGGAGAAAAA
116003570 CTAAAAA
131 CTAAAAA
116003577 TTTAGTTTTAATTAATAATTTTAACATATTTATAATTAAGCACAAAG-AAAAAAAAA-AATGGAA
1 TTTAGTTTTAATTAATAATTTTAACATATTTATAATTAAGCACAAAGAAAAAAAAAAGAATGGAA
* * *
116003640 TGTAT-TATGTTATTGGAAGGGTGAAAAAGTAATTAAACACCAAAAGTACTTTTGGTAGGAGAAA
66 AGT-TCTATGTTATTAGAA-GGTGAAAAAGTAATTAAACACCAAAAGTACTTTTGATAGGAGAAA
*
116003704 AATTAAAAA
129 AACTAAAAA
116003713 TTTAG
1 TTTAG
116003718 CTTATCGTGT
Statistics
Matches: 130, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
135 21 0.16
136 64 0.49
137 45 0.35
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.31
Consensus pattern (137 bp):
TTTAGTTTTAATTAATAATTTTAACATATTTATAATTAAGCACAAAGAAAAAAAAAAGAATGGAA
AGTTCTATGTTATTAGAAGGTGAAAAAGTAATTAAACACCAAAAGTACTTTTGATAGGAGAAAAA
CTAAAAA
Found at i:116006072 original size:23 final size:22
Alignment explanation
Indices: 116006023--116006071 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
116006013 TATTTTATAG
116006023 TTTTCAAACCTTAAAATTTACAT
1 TTTTCAAACCTT-AAATTTACAT
*
116006046 TTTTCAAACCATT-AATTTATAT
1 TTTTCAAACC-TTAAATTTACAT
116006068 TTTT
1 TTTT
116006072 TTAATAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 12 0.50
23 10 0.42
24 2 0.08
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTCAAACCTTAAATTTACAT
Found at i:116007398 original size:14 final size:14
Alignment explanation
Indices: 116007379--116007412 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
116007369 ATGGTTGTGG
116007379 TTTGCATAACAAAT
1 TTTGCATAACAAAT
116007393 TTTGCATAACAAAT
1 TTTGCATAACAAAT
116007407 TTTGCA
1 TTTGCA
116007413 GATAAACTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (14 bp):
TTTGCATAACAAAT
Found at i:116013515 original size:19 final size:19
Alignment explanation
Indices: 116013491--116013529 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
116013481 TAGATTCTTA
*
116013491 ACCTCTGTTTTTGAACCAT
1 ACCTCTGCTTTTGAACCAT
116013510 ACCTCTGCTTTTGAACCAT
1 ACCTCTGCTTTTGAACCAT
116013529 A
1 A
116013530 ACTTAGCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.38
Consensus pattern (19 bp):
ACCTCTGCTTTTGAACCAT
Found at i:116019474 original size:30 final size:28
Alignment explanation
Indices: 116019434--116019489 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
116019424 AACTTAGAAA
* *
116019434 ATTTTTTAAATTTTTAAAAAATCATAATCT
1 ATTTTATAAA-TTATAAAAAAT-ATAATCT
116019464 ATTTTATAAATTATAAAAAATATAAT
1 ATTTTATAAATTATAAAAAATATAAT
116019490 TATAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 10 0.42
30 9 0.38
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTTTATAAATTATAAAAAATATAATCT
Found at i:116020628 original size:14 final size:14
Alignment explanation
Indices: 116020590--116020641 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
116020580 AAAAATTAGT
116020590 TAAATTTATAATAT-
1 TAAATTTA-AATATA
**
116020604 TAAAAAT-AATATA
1 TAAATTTAAATATA
116020617 TAAATTTAAATATA
1 TAAATTTAAATATA
116020631 TAAATTCTAAA
1 TAAATT-TAAA
116020642 AAGTTTTGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 5 0.16
13 5 0.16
14 17 0.55
15 4 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TAAATTTAAATATA
Found at i:116020921 original size:15 final size:14
Alignment explanation
Indices: 116020893--116020919 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
116020883 CATGTGTCTT
116020893 TTTTTAAATATTTA
1 TTTTTAAATATTTA
116020907 TTTTTAAATATTT
1 TTTTTAAATATTT
116020920 TACTATATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATATTTA
Found at i:116021014 original size:2 final size:2
Alignment explanation
Indices: 116021007--116021033 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
116020997 AATAATATCC
116021007 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
116021034 CACATGGACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:116035278 original size:28 final size:29
Alignment explanation
Indices: 116035247--116035308 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
116035237 TCCCAAGGGC
116035247 AAGAAAGAAAAAAAATA-AAAAAAAATAA
1 AAGAAAGAAAAAAAATACAAAAAAAATAA
* *
116035275 AAG--AGAAAACAAATACTTAAAAAAATAA
1 AAGAAAGAAAAAAAATAC-AAAAAAAATAA
116035303 AAGAAA
1 AAGAAA
116035309 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
26 11 0.39
28 16 0.57
30 1 0.04
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (29 bp):
AAGAAAGAAAAAAAATACAAAAAAAATAA
Found at i:116038243 original size:9 final size:11
Alignment explanation
Indices: 116038226--116038266 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
116038216 CCCCCCTTCT
116038226 TTCTCTCTCCC
1 TTCTCTCTCCC
116038237 TTCTCTCTCCC
1 TTCTCTCTCCC
116038248 TTCTCTCTTCCC
1 TTCTCTC-TCCC
116038260 -TCTCTCT
1 TTCTCTCT
116038267 TCTTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 1 0.03
11 24 0.83
12 4 0.14
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (11 bp):
TTCTCTCTCCC
Found at i:116038252 original size:18 final size:18
Alignment explanation
Indices: 116038231--116038269 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
116038221 CTTCTTTCTC
*
116038231 TCTCCCTTCTCTCTCCCT
1 TCTCCCTTCCCTCTCCCT
* *
116038249 TCTCTCTTCCCTCTCTCT
1 TCTCCCTTCCCTCTCCCT
116038267 TCT
1 TCT
116038270 TTTTTTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTCCCTTCCCTCTCCCT
Found at i:116039229 original size:24 final size:28
Alignment explanation
Indices: 116039196--116039250 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
116039186 GTATATATTG
116039196 TATATGTTTT-ATA-TA-T-GTTATATA
1 TATATGTTTTAATATTACTAGTTATATA
*
116039220 TATATTTTTTAATATTACTAGTTATATA
1 TATATGTTTTAATATTACTAGTTATATA
116039248 TAT
1 TAT
116039251 TTCTTATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 9 0.35
25 3 0.12
26 2 0.08
27 1 0.04
28 11 0.42
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (28 bp):
TATATGTTTTAATATTACTAGTTATATA
Found at i:116039335 original size:36 final size:35
Alignment explanation
Indices: 116039293--116039373 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 35
116039283 CCATCTTTTG
*
116039293 TATATATTTTTAAATACTATATT-GTATATGTCTATA
1 TATATATTTTT-AATACTATATTAGTATATAT-TATA
* * *
116039329 TATATATTCTTAGTACTATATTACGTATATATTATT
1 TATATATTTTTAATACTATATTA-GTATATATTATA
116039365 TATATATTT
1 TATATATTT
116039374 ATTTTACCCC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
35 10 0.26
36 21 0.55
37 7 0.18
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (35 bp):
TATATATTTTTAATACTATATTAGTATATATTATA
Found at i:116042792 original size:69 final size:69
Alignment explanation
Indices: 116042681--116042812 Score: 237
Period size: 69 Copynumber: 1.9 Consensus size: 69
116042671 ATATCTCTCG
* *
116042681 ATTATAAAGAGTTTTTGAGACATTCTAAAAAAATGAAGATCTATTATAATCACTATTAAACAAAA
1 ATTATAAAGAGTTTTTAAGACATTCTAAAAAAATGAAGATCTATTACAATCACTATTAAACAAAA
116042746 ATCA
66 ATCA
*
116042750 ATTATAAAGAGTTTTTAAGACATTCTAAAATAATGAAGATCTATTACAATCACTATTAAACAA
1 ATTATAAAGAGTTTTTAAGACATTCTAAAAAAATGAAGATCTATTACAATCACTATTAAACAA
116042813 CAATTAAGCT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (69 bp):
ATTATAAAGAGTTTTTAAGACATTCTAAAAAAATGAAGATCTATTACAATCACTATTAAACAAAA
ATCA
Found at i:116043130 original size:29 final size:30
Alignment explanation
Indices: 116043073--116043130 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
116043063 AATTCCATCT
*
116043073 ATAGAAATCAAATATATATAAAAATTATTA
1 ATAGAAATCAAAAATATATAAAAATTATTA
*
116043103 ATAGAAATTAAAAATAT-TAAAAATTATT
1 ATAGAAATCAAAAATATATAAAAATTATT
116043131 TTTTTTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (30 bp):
ATAGAAATCAAAAATATATAAAAATTATTA
Found at i:116044099 original size:21 final size:20
Alignment explanation
Indices: 116044073--116044112 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
116044063 TTCCAAATTT
*
116044073 AGAGAAACAGATAAATTTTGG
1 AGAGAAACAGA-AAACTTTGG
116044094 AGAGAAACAGAAAACTTTG
1 AGAGAAACAGAAAACTTTG
116044113 TTTATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (20 bp):
AGAGAAACAGAAAACTTTGG
Found at i:116044709 original size:98 final size:99
Alignment explanation
Indices: 116044539--116044729 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 99
116044529 AATTAGTTAA
*
116044539 AAATAAAATATATTTAACATAATGGTAAATATAAAAATATATATAATTTCATTATATAATTACAT
1 AAATAAAATATATTTAACATAATGATAAATATAAAAATATATAT-ATTTCATTATATAATTACAT
116044604 ATTTATTATTTTATTTATATAAATAAAATAATTAT
65 ATTTATTATTTTATTTATATAAATAAAATAATTAT
* * *
116044639 AAATAAAAATATTTTTAACATAATGATATATATAAAACATATAT-T-TTT-ATTATATAGTTACA
1 AAAT-AAAATATATTTAACATAATGATAAATATAAAA-ATATATATATTTCATTATATAATTACA
116044701 TATTTATTATTTTATTTATATAAATAAAA
64 TATTTATTATTTTATTTATATAAATAAAA
116044730 GAGTTTTTGA
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
98 42 0.49
99 3 0.04
100 4 0.05
101 30 0.35
102 6 0.07
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (99 bp):
AAATAAAATATATTTAACATAATGATAAATATAAAAATATATATATTTCATTATATAATTACATA
TTTATTATTTTATTTATATAAATAAAATAATTAT
Found at i:116047287 original size:2 final size:2
Alignment explanation
Indices: 116047280--116047315 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
116047270 CAAATAAATA
116047280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116047316 TGACATTGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116049353 original size:4 final size:4
Alignment explanation
Indices: 116049344--116049369 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
116049334 CAAGTGTATG
116049344 TGTA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TG
116049370 AGCGGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:116050005 original size:17 final size:17
Alignment explanation
Indices: 116049958--116050005 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 17
116049948 TATTTGTATT
*
116049958 TTATTTGTATTAAAG--
1 TTATTTGTATAAAAGTA
116049973 TT-TTTGTA-AAAA-TA
1 TTATTTGTATAAAAGTA
116049987 TTATTTGTATAAAAGTA
1 TTATTTGTATAAAAGTA
116050004 TT
1 TT
116050006 TAATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
13 3 0.11
14 8 0.30
15 8 0.30
16 4 0.15
17 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (17 bp):
TTATTTGTATAAAAGTA
Found at i:116052774 original size:25 final size:25
Alignment explanation
Indices: 116052719--116052774 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
116052709 TTTAGCTTGC
116052719 ATGAGCTTCTCGTTAAATGGCTCGA
1 ATGAGCTTCTCGTTAAATGGCTCGA
* *
116052744 AAGAGCTT-TCCGTTAACAT-GCTCGT
1 ATGAGCTTCT-CGTTAA-ATGGCTCGA
116052769 ATGAGC
1 ATGAGC
116052775 ACATATGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.04
25 23 0.88
26 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
ATGAGCTTCTCGTTAAATGGCTCGA
Found at i:116058103 original size:27 final size:26
Alignment explanation
Indices: 116058044--116058123 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
116058034 ATTTGCTTTG
** * *
116058044 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
116058070 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
116058097 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
116058123 T
1 T
116058124 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:116065944 original size:29 final size:28
Alignment explanation
Indices: 116065904--116065963 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
116065894 TCTCATTTTC
*
116065904 TTTCCTTTTTCTTTCTTTTTCCTTTCTG
1 TTTCCTTTTTCTTTCTATTTCCTTTCTG
* * *
116065932 TTTCGTTTGTTCTTTCTATTTCTTTTTTG
1 TTTCCTTT-TTCTTTCTATTTCCTTTCTG
116065961 TTT
1 TTT
116065964 ATTCATTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.02, C:0.18, G:0.07, T:0.73
Consensus pattern (28 bp):
TTTCCTTTTTCTTTCTATTTCCTTTCTG
Found at i:116068626 original size:17 final size:17
Alignment explanation
Indices: 116068596--116068628 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
116068586 TCACTTATGT
116068596 TTATTGTTCAAAATAAG
1 TTATTGTTCAAAATAAG
116068613 TTATT-TTCATAAATAA
1 TTATTGTTCA-AAATAA
116068629 TAAAAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
TTATTGTTCAAAATAAG
Found at i:116075449 original size:9 final size:9
Alignment explanation
Indices: 116075435--116075465 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
116075425 CACCAATCTG
116075435 TTATTCGAA
1 TTATTCGAA
*
116075444 TTATTCGAG
1 TTATTCGAA
116075453 TTATTCGAA
1 TTATTCGAA
116075462 TTAT
1 TTAT
116075466 AAAACTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATTCGAA
Found at i:116086305 original size:6 final size:6
Alignment explanation
Indices: 116086294--116086325 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
116086284 ATGTATGATC
116086294 ATTCCA ATTCCA ATTCCA ATTCCA ATTCCA AT
1 ATTCCA ATTCCA ATTCCA ATTCCA ATTCCA AT
116086326 AATTTGGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTCCA
Found at i:116086464 original size:5 final size:5
Alignment explanation
Indices: 116086456--116086493 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
116086446 AGTAGTTCCA
* *
116086456 ACTCA ACTCA ACTCC ACTCC ACTCC ACTCC ACTCC ACT
1 ACTCC ACTCC ACTCC ACTCC ACTCC ACTCC ACTCC ACT
116086494 ACTCAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (5 bp):
ACTCC
Found at i:116091535 original size:19 final size:20
Alignment explanation
Indices: 116091511--116091549 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
116091501 TCTTATTTTT
116091511 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
116091530 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
116091550 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:116091567 original size:25 final size:23
Alignment explanation
Indices: 116091511--116091575 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
116091501 TCTTATTTTT
*
116091511 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
116091530 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
116091553 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
116091576 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:116093515 original size:31 final size:29
Alignment explanation
Indices: 116093472--116093582 Score: 91
Period size: 31 Copynumber: 3.7 Consensus size: 29
116093462 ATCTCAAAAT
* *
116093472 TATATATGAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTT-G-GTGCAATTG
116093503 TATACATGAACTTTAATTTGGTGCAA-T-
1 TATACATGAACTTTAATTTGGTGCAATTG
* * *
116093530 TATACATTTGAAACTCTAATTGTGGTTCAAATG
1 TATACA--TG-AACTTTAATT-TGGTGCAATTG
*
116093563 TATACTTGAAACTTTAATTT
1 TATACATG-AACTTTAATTT
116093583 TGATTTAATC
Statistics
Matches: 68, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
27 6 0.09
28 1 0.01
29 8 0.12
30 11 0.16
31 36 0.53
32 1 0.01
33 5 0.07
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.43
Consensus pattern (29 bp):
TATACATGAACTTTAATTTGGTGCAATTG
Found at i:116102160 original size:2 final size:2
Alignment explanation
Indices: 116102148--116102178 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
116102138 ACTTATCTTT
*
116102148 TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
116102179 GAGGTTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:116102556 original size:37 final size:37
Alignment explanation
Indices: 116102514--116102584 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
116102504 AAAAATCATG
* * *
116102514 AACACTAATCTATAACTCCTAAAATACTAAACCCTTA
1 AACACTAAACCATAACTCCTAAAACACTAAACCCTTA
* *
116102551 AACACTAAACCATAACTTCTAAAACCCTAAACCC
1 AACACTAAACCATAACTCCTAAAACACTAAACCC
116102585 CAAAAAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (37 bp):
AACACTAAACCATAACTCCTAAAACACTAAACCCTTA
Found at i:116102710 original size:7 final size:7
Alignment explanation
Indices: 116102698--116102761 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
116102688 TTTATTTTTT
*
116102698 GGTTTAC
1 GGTTTAA
116102705 GGTTTAA
1 GGTTTAA
**
116102712 TATTTAA
1 GGTTTAA
116102719 GGTTTAA
1 GGTTTAA
* *
116102726 GGTCTAT
1 GGTTTAA
*
116102733 GGTTTAG
1 GGTTTAA
*
116102740 GGTTTTAT
1 GG-TTTAA
116102748 GGTTTAA
1 GGTTTAA
116102755 GGTTTAA
1 GGTTTAA
116102762 TGGCAATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:116102750 original size:15 final size:15
Alignment explanation
Indices: 116102714--116102764 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
116102704 CGGTTTAATA
*
116102714 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
116102728 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
116102743 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
116102758 TTAATGG
1 TTTATGG
116102765 CAATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:116103360 original size:7 final size:7
Alignment explanation
Indices: 116103350--116103374 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
116103340 AAATAAACTC
116103350 AAAATTT
1 AAAATTT
116103357 AAAATTT
1 AAAATTT
116103364 AAAATTT
1 AAAATTT
116103371 AAAA
1 AAAA
116103375 ATAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:116103382 original size:15 final size:15
Alignment explanation
Indices: 116103350--116103406 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
116103340 AAATAAACTC
**
116103350 AAAATTT-AAAATTT
1 AAAATTTAAAAATAA
116103364 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
**
116103379 AAAATAAAAAAATAA
1 AAAATTTAAAAATAA
*
116103394 AAAACTTAAAAAT
1 AAAATTTAAAAAT
116103407 TAATATTTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
14 7 0.20
15 28 0.80
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAATAA
Found at i:116103941 original size:3 final size:3
Alignment explanation
Indices: 116103933--116103963 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
116103923 TAACATTTCG
116103933 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
116103964 CCCTTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:116108624 original size:43 final size:43
Alignment explanation
Indices: 116108559--116108698 Score: 219
Period size: 43 Copynumber: 3.3 Consensus size: 43
116108549 TATCATTATT
* *
116108559 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
116108602 TTTAGCGGCGTTTGCGAAAAAAGCGACGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
116108645 TTTAGCGGCGTTTGCGAAAAAA-CGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
116108687 TTTAGCAGCGTT
1 TTTAGCGGCGTT
116108699 GCGTATAGCG
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 28 0.31
43 62 0.69
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:116110319 original size:23 final size:23
Alignment explanation
Indices: 116110276--116110320 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
116110266 ATGATAGGGG
* *
116110276 TTTTAATTAATTTAGTTAATTAA
1 TTTTAATTAATTCACTTAATTAA
116110299 TTTTAATTAA-TCACTTGAATTA
1 TTTTAATTAATTCACTT-AATTA
116110321 TTTGGTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTTAATTAATTCACTTAATTAA
Found at i:116112022 original size:2 final size:2
Alignment explanation
Indices: 116112015--116112042 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
116112005 CATCCTAGGT
116112015 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
116112043 ACACACACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:116112047 original size:2 final size:2
Alignment explanation
Indices: 116112042--116112072 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
116112032 CTCTCTCTCT
116112042 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
116112073 TCTGTCTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:116127938 original size:26 final size:26
Alignment explanation
Indices: 116127905--116127957 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
116127895 TTTAATGTGT
116127905 TAGTTAAATTAGTTAATTTGCTTAGC
1 TAGTTAAATTAGTTAATTTGCTTAGC
116127931 TAGTTAAATTAGTTAATTTGCTTAGC
1 TAGTTAAATTAGTTAATTTGCTTAGC
116127957 T
1 T
116127958 CATAATTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (26 bp):
TAGTTAAATTAGTTAATTTGCTTAGC
Found at i:116136355 original size:43 final size:42
Alignment explanation
Indices: 116136293--116136456 Score: 202
Period size: 42 Copynumber: 3.9 Consensus size: 42
116136283 TACCATACTA
** *
116136293 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* * *
116136335 ATGCCAATAGCCCAGCTATGGTCTTATATGAAATCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* *
116136378 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCACATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
* ** * *
116136420 ATACCATATCATAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
116136457 ACTAACTCTA
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 69 0.66
43 36 0.34
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCACATCG
Found at i:116138185 original size:22 final size:22
Alignment explanation
Indices: 116138160--116138203 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
116138150 GAAAACCCAA
116138160 AAACA-AAGAATCCTCAAAATGT
1 AAACACAA-AATCCTCAAAATGT
* *
116138182 AAACACAAAATTCTCTAAATGT
1 AAACACAAAATCCTCAAAATGT
116138204 GTTATGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.52, C:0.18, G:0.07, T:0.23
Consensus pattern (22 bp):
AAACACAAAATCCTCAAAATGT
Found at i:116140083 original size:24 final size:24
Alignment explanation
Indices: 116140055--116140106 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
116140045 TTTTTAGGTC
116140055 AAATAAATTATACTAATAAATACA
1 AAATAAATTATACTAATAAATACA
* * * *
116140079 AAATATATTATATTAATAGATACT
1 AAATAAATTATACTAATAAATACA
116140103 AAAT
1 AAAT
116140107 CTTTTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACA
Found at i:116140351 original size:24 final size:25
Alignment explanation
Indices: 116140324--116140374 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
116140314 TTCATAGGTC
*
116140324 AAATAAATTATGCTAATAAATA-TA
1 AAATAAATTATACTAATAAATACTA
*
116140348 AAATATATTATACTAATAAATACTA
1 AAATAAATTATACTAATAAATACTA
116140373 AA
1 AA
116140375 TCTTCTAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (25 bp):
AAATAAATTATACTAATAAATACTA
Found at i:116144575 original size:56 final size:56
Alignment explanation
Indices: 116144428--116144576 Score: 244
Period size: 56 Copynumber: 2.7 Consensus size: 56
116144418 GTCTCATCAG
** *
116144428 GGTCTTACTCATACACATATATCGGAATCACATATAAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
*
116144484 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
* *
116144540 GGTCTTACTTGCACACATATATCGAAATCACATATCA
1 GGTCTTACTCGCACACATATATCGGAATCACATATCA
116144577 CAAGTCGAAG
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 86 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
Found at i:116144598 original size:2 final size:2
Alignment explanation
Indices: 116144591--116144622 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
116144581 TCGAAGTCTC
116144591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116144623 CCATGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116150885 original size:32 final size:32
Alignment explanation
Indices: 116150849--116150912 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
116150839 AAAGTAGAAG
116150849 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
1 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
116150881 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
1 TGGAGGCTTGATCATTGACATCCTCAGCCCAA
116150913 CCCCCATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (32 bp):
TGGAGGCTTGATCATTGACATCCTCAGCCCAA
Found at i:116159892 original size:26 final size:27
Alignment explanation
Indices: 116159863--116159930 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
116159853 TAATCAAATT
*
116159863 ATTAATAATTTATA-AAAATTA-ATTAA
1 ATTAA-AATTTATACAAAATTACATAAA
*
116159889 ATTAAAAATTTATATCTAAATTACATAAA
1 ATT-AAAATTTATA-CAAAATTACATAAA
116159918 ATTAAAATTTATA
1 ATTAAAATTTATA
116159931 TATAACTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 11 0.31
27 2 0.06
28 16 0.44
29 7 0.19
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (27 bp):
ATTAAAATTTATACAAAATTACATAAA
Found at i:116159924 original size:28 final size:28
Alignment explanation
Indices: 116159878--116159931 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
116159868 TAATTTATAA
*
116159878 AAATTAATTAAATTAAAAATTTATATCT
1 AAATTAATAAAATTAAAAATTTATATCT
116159906 AAATTACATAAAATT-AAAATTTATAT
1 AAATTA-ATAAAATTAAAAATTTATAT
116159932 ATAACTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (28 bp):
AAATTAATAAAATTAAAAATTTATATCT
Found at i:116160523 original size:23 final size:22
Alignment explanation
Indices: 116160496--116160570 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
116160486 CATGTCTAAA
*
116160496 AATAATATACATATGTATATATT
1 AATAATATATATAT-TATATATT
* *
116160519 AATAAAATATATATTACATATTT
1 AATAATATATATATTATATA-TT
* *
116160542 AAGTAA-ATATATATAATATAAT
1 AA-TAATATATATATTATATATT
116160564 AATAATA
1 AATAATA
116160571 AAGTAAATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
21 3 0.07
22 9 0.21
23 28 0.65
24 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
AATAATATATATATTATATATT
Found at i:116160578 original size:29 final size:32
Alignment explanation
Indices: 116160542--116160623 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 32
116160532 TTACATATTT
116160542 AAGTAAATATATATAATATAATAA-T-AAT-A
1 AAGTAAATATATATAATATAATAAGTAAATGA
*
116160571 AAGTAAATATA-ATAAAATAAATAAGTAAATGA
1 AAGTAAATATATATAATAT-AATAAGTAAATGA
*
116160603 AA-TAAATAAATA-AATA-AATAA
1 AAGTAAATATATATAATATAATAA
116160624 AAGATTAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
28 6 0.13
29 21 0.47
30 1 0.02
31 13 0.29
32 4 0.09
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (32 bp):
AAGTAAATATATATAATATAATAAGTAAATGA
Found at i:116160580 original size:25 final size:25
Alignment explanation
Indices: 116160552--116160624 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 25
116160542 AAGTAAATAT
116160552 ATATAATATAAT-AATAATAAA-GTAA
1 ATATAATA-AATAAATAATAAATG-AA
116160577 ATATAATAAAATAAATAAGTAAATGAA
1 ATATAAT-AAATAAATAA-TAAATGAA
116160604 ATA-AATAAATAAATAAATAAA
1 ATATAATAAATAAAT-AATAAA
116160625 AGATTAGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
25 22 0.51
26 11 0.26
27 9 0.21
28 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.27
Consensus pattern (25 bp):
ATATAATAAATAAATAATAAATGAA
Found at i:116160594 original size:4 final size:4
Alignment explanation
Indices: 116160545--116160624 Score: 74
Period size: 4 Copynumber: 19.0 Consensus size: 4
116160535 CATATTTAAG
*
116160545 TAAA TATA TATAA TATAA T-AA T-AA TAAA GTAAA TATAA TAAAA TAAA
1 TAAA TAAA TA-AA TA-AA TAAA TAAA TAAA -TAAA TA-AA T-AAA TAAA
*
116160592 TAAG TAAA TGAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
116160625 AGATTAGAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
3 6 0.09
4 38 0.58
5 21 0.32
6 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (4 bp):
TAAA
Found at i:116160607 original size:17 final size:16
Alignment explanation
Indices: 116160545--116160624 Score: 74
Period size: 17 Copynumber: 4.8 Consensus size: 16
116160535 CATATTTAAG
*
116160545 TAAATATATATAATATAA
1 TAAATAAATA-AATA-AA
116160563 T-AAT-AATAAAGTAAA
1 TAAATAAATAAA-TAAA
*
116160578 TATAATAAAATAAATAAG
1 TA-AAT-AAATAAATAAA
116160596 TAAATGAAATAAATAAA
1 TAAAT-AAATAAATAAA
116160613 TAAATAAATAAA
1 TAAATAAATAAA
116160625 AGATTAGAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
15 5 0.09
16 12 0.23
17 24 0.45
18 6 0.11
19 6 0.11
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (16 bp):
TAAATAAATAAATAAA
Found at i:116161905 original size:16 final size:16
Alignment explanation
Indices: 116161869--116161921 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
116161859 GTTATAAACC
* *
116161869 CATGAATTGAGTATGG
1 CATGAAATGAGTATTG
*
116161885 TATGAAATGATGTATT-
1 CATGAAATGA-GTATTG
*
116161901 CATGAATTGAGTATTG
1 CATGAAATGAGTATTG
116161917 CATGA
1 CATGA
116161922 CTGATGCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (16 bp):
CATGAAATGAGTATTG
Found at i:116175462 original size:39 final size:39
Alignment explanation
Indices: 116175410--116175487 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
116175400 TCATAAAACT
116175410 AGCATATACACTCACACACAATTACACTCAACTCATATA
1 AGCATATACACTCACACACAATTACACTCAACTCATATA
* *
116175449 AGCATATAGACTCACACGCAATTACACTCAACTCATATA
1 AGCATATACACTCACACACAATTACACTCAACTCATATA
116175488 TATATTATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.29, G:0.05, T:0.23
Consensus pattern (39 bp):
AGCATATACACTCACACACAATTACACTCAACTCATATA
Found at i:116182023 original size:19 final size:19
Alignment explanation
Indices: 116181999--116182050 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
116181989 AGCTTAAATT
116181999 GGTATCGATACCAAGT-AA
1 GGTATCGATACCAAGTCAA
* *
116182017 GGGTATCGATACTTAGGTCAA
1 -GGTATCGATAC-CAAGTCAA
116182038 GGTATCGATACCA
1 GGTATCGATACCA
116182051 TATAGAAGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 14 0.50
21 2 0.07
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (19 bp):
GGTATCGATACCAAGTCAA
Found at i:116185213 original size:39 final size:40
Alignment explanation
Indices: 116185047--116185230 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
116185037 GCTACTCGCT
* * *
116185047 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
*
116185087 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
*
116185127 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
** * *
116185167 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTTACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
*
116185206 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
116185231 TTATCATCCG
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 33 0.25
40 95 0.73
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:116206286 original size:19 final size:19
Alignment explanation
Indices: 116206258--116206296 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
116206248 AGAGCAAAAG
116206258 AAATGAG-AAACGGGCCAA
1 AAATGAGAAAACGGGCCAA
*
116206276 AAATAGAGAAAATGGGCCAA
1 AAAT-GAGAAAACGGGCCAA
116206296 A
1 A
116206297 TTACGAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.13, G:0.26, T:0.08
Consensus pattern (19 bp):
AAATGAGAAAACGGGCCAA
Found at i:116207819 original size:32 final size:32
Alignment explanation
Indices: 116207782--116207849 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
116207772 CTATACGGGT
116207782 TATTTTGGGGTCAAAAGTTATTGTTACCCATA
1 TATTTTGGGGTCAAAAGTTATTGTTACCCATA
* *
116207814 TATTTTGGGGTCTAGAGTTATTGTTACCCATA
1 TATTTTGGGGTCAAAAGTTATTGTTACCCATA
116207846 TATT
1 TATT
116207850 GGACTTGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (32 bp):
TATTTTGGGGTCAAAAGTTATTGTTACCCATA
Found at i:116213816 original size:49 final size:49
Alignment explanation
Indices: 116213738--116213978 Score: 275
Period size: 49 Copynumber: 4.9 Consensus size: 49
116213728 GTAGCTGAAG
*** *
116213738 CTATCTGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * **
116213787 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * *
116213837 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
116213887 GTTATCAGGTACACATAGTAACCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
116213937 CAATCTGGTACACGTAGTAACCTGCACTTAGTACTACACACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
116213979 TGGCCTCACA
Statistics
Matches: 159, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 76 0.48
50 46 0.29
51 37 0.23
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:116213922 original size:101 final size:98
Alignment explanation
Indices: 116213752--116213980 Score: 314
Period size: 100 Copynumber: 2.3 Consensus size: 98
116213742 CTGGTACGTA
* * * * *
116213752 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAACCTGCACTTA
* * *
116213817 GTACTACACACATGACCTAACCATTTGATACACG
66 GTACTACACACACGACC-AACAATCTGATACACG
*
116213851 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAACCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAACCTGCACT
** *
116213916 TAGTACTACACATGCGACCAACAATCTGGTACACG
64 TAGTACTACACACACGACCAACAATCTGATACACG
*
116213951 TAGTAACCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
116213981 GCCTCACAAT
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 29 0.25
100 45 0.39
101 41 0.36
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAACCTGCACTTA
GTACTACACACACGACCAACAATCTGATACACG
Found at i:116214356 original size:35 final size:35
Alignment explanation
Indices: 116214305--116214371 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
116214295 ATATTTCATA
*
116214305 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
116214340 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
116214372 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:116214374 original size:19 final size:19
Alignment explanation
Indices: 116214317--116214374 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
116214307 AACAATCTTC
116214317 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
116214336 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
116214352 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
116214371 ATAT
1 ATAT
116214375 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:116218501 original size:27 final size:27
Alignment explanation
Indices: 116218439--116218603 Score: 165
Period size: 27 Copynumber: 6.1 Consensus size: 27
116218429 CATGGCTGCT
* *
116218439 AGAACAGATAA-TGTGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
116218465 AGATCAAGATAATTGTGGCAGAGCCACC
1 AGAAC-AGATAATTGTGGCAGAGCCACC
* *
116218493 AAAACAGAT-ATATGTGGCAGAGTCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
116218520 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
* *
116218547 AGGACAGAT-ATATGTGGTAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
** *
116218574 AGATTAGATAAATTGTGGCATAGCCACC
1 AGAACAGAT-AATTGTGGCAGAGCCACC
116218602 AG
1 AG
116218604 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
26 8 0.07
27 70 0.62
28 33 0.29
29 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:116218532 original size:54 final size:54
Alignment explanation
Indices: 116218441--116218602 Score: 236
Period size: 54 Copynumber: 3.0 Consensus size: 54
116218431 TGGCTGCTAG
* *
116218441 AACAGATA-ATGTGACAGAGTCACCAGATCAAGATAATTGTGGCAGAGCCACCAA
1 AACAGATATATGTGGCAGAGTCACCAGATC-AGATAATTGTGGCATAGCCACCAA
*
116218495 AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAA
* * * *
116218549 GACAGATATATGTGGTAGAGCCACCAGATTAGATAAATTGTGGCATAGCCACCA
1 AACAGATATATGTGGCAGAGTCACCAGATCAGAT-AATTGTGGCATAGCCACCA
116218603 GGACGCTTCC
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 60 0.61
55 39 0.39
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (54 bp):
AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAA
Found at i:116220235 original size:26 final size:26
Alignment explanation
Indices: 116220198--116220306 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
116220188 ATGAAATTCC
* *
116220198 TATCATGGAACATTTACCTAAGCCAT
1 TATCATGAAACATTTACCTAACCCAT
116220224 TATCATGAAACATTTACCTAACCCAT
1 TATCATGAAACATTTACCTAACCCAT
116220250 TATCATGAAACATTTACCTAACCCAT
1 TATCATGAAACATTTACCTAACCCAT
*
116220276 TATCATGGAACATTTACCTAACCCAT
1 TATCATGAAACATTTACCTAACCCAT
116220302 TATCA
1 TATCA
116220307 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
TATCATGAAACATTTACCTAACCCAT
Found at i:116221850 original size:28 final size:28
Alignment explanation
Indices: 116221818--116221916 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
116221808 GCCATAAGCC
*
116221818 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
116221846 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
116221874 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
116221903 CGCACACTTAGTGC
1 CGCACACTTAGTGC
116221917 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:116224879 original size:40 final size:40
Alignment explanation
Indices: 116224824--116224992 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
116224814 AACATTGGAA
116224824 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
116224864 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* *
116224904 ATATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
116224942 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
116224983 CTATATCCGG
1 ATATATCCGG
116224993 TTAAATCCCG
Statistics
Matches: 113, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
38 2 0.02
39 29 0.26
40 82 0.73
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:116224980 original size:79 final size:80
Alignment explanation
Indices: 116224824--116224992 Score: 234
Period size: 79 Copynumber: 2.1 Consensus size: 80
116224814 AACATTGGAA
* * * *
116224824 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGG
* *
116224889 CATTCGTGCGAGTTG
66 CAATCGTGCGAGTCG
* *
116224904 ATATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TCACCAAATCCGGGTTATGACCCGAAG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAG
116224967 GCAATCGTGCGAGTCG
65 GCAATCGTGCGAGTCG
*
116224983 CTATATCCGG
1 ATATATCCGG
116224993 TTAAATCCCG
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 2 0.03
79 48 0.61
80 29 0.37
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (80 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGG
CAATCGTGCGAGTCG
Found at i:116232974 original size:40 final size:40
Alignment explanation
Indices: 116232919--116233128 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
116232909 AACATTGGAA
116232919 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
116232959 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
116232999 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
116233039 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
116233078 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
116233119 CTATATCCGG
1 ATATATCCGG
116233129 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:116240835 original size:27 final size:27
Alignment explanation
Indices: 116240775--116240939 Score: 174
Period size: 27 Copynumber: 6.1 Consensus size: 27
116240765 CATGGCTGCT
* * *
116240775 AGAACAGATAA-CGTGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
116240801 AGATACAGATAATTGTGGCAGAGCCACC
1 AGA-ACAGATAATTGTGGCAGAGCCACC
* *
116240829 AAAACAGAT-ATATGTGGCAGAGTCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
116240856 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
116240883 AGGACAGAT-ATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
** *
116240910 AGATTAGATAAATTGTGGCATAGCCACC
1 AGAACAGAT-AATTGTGGCAGAGCCACC
116240938 AG
1 AG
116240940 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.06
27 75 0.65
28 32 0.28
29 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:116240865 original size:54 final size:54
Alignment explanation
Indices: 116240777--116240938 Score: 236
Period size: 54 Copynumber: 3.0 Consensus size: 54
116240767 TGGCTGCTAG
* * *
116240777 AACAGATA-ACGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCACCAA
1 AACAGATATATGTGGCAGAGTCACCAGAT-CAGATAATTGTGGCATAGCCACCAA
*
116240831 AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAA
* * *
116240885 GACAGATATATGTGGCAGAGCCACCAGATTAGATAAATTGTGGCATAGCCACCA
1 AACAGATATATGTGGCAGAGTCACCAGATCAGAT-AATTGTGGCATAGCCACCA
116240939 GGACGCTTCC
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 62 0.63
55 37 0.37
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
AACAGATATATGTGGCAGAGTCACCAGATCAGATAATTGTGGCATAGCCACCAA
Found at i:116242571 original size:26 final size:26
Alignment explanation
Indices: 116242534--116242590 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
116242524 ATGAAATTCC
* *
116242534 TATCATGGAACATTTACCTAAGCCAT
1 TATCATGAAACATTTACCTAACCCAT
116242560 TATCATGAAACATTTACCTAACCCAT
1 TATCATGAAACATTTACCTAACCCAT
116242586 TATCA
1 TATCA
116242591 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
TATCATGAAACATTTACCTAACCCAT
Found at i:116243190 original size:43 final size:41
Alignment explanation
Indices: 116243096--116243233 Score: 190
Period size: 41 Copynumber: 3.3 Consensus size: 41
116243086 ACATAAAATT
*
116243096 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
* *
116243137 TGCTAGGCAATAAGCTTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
*
116243180 TGCTAGGCAATAAGCCTGATGTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
116243221 TGCTAGGCAATAA
1 TGCTAGGCAATAA
116243234 ATCCCAGATA
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
41 47 0.54
42 3 0.03
43 37 0.43
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:116244946 original size:40 final size:40
Alignment explanation
Indices: 116244842--116245096 Score: 351
Period size: 39 Copynumber: 6.5 Consensus size: 40
116244832 AAACCAAGTA
* * *
116244842 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
116244881 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
116244920 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
116244960 CCTTCGGGACTTAGTCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
116245000 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
116245039 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
116245078 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
116245097 TTATCATCCG
Statistics
Matches: 195, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.06
39 92 0.47
40 91 0.47
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:116249949 original size:41 final size:41
Alignment explanation
Indices: 116249887--116250063 Score: 250
Period size: 41 Copynumber: 4.3 Consensus size: 41
116249877 ATAAAATTTT
*
116249887 CTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCCTG
1 CTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCCTG
* *
116249928 CTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCCTA
1 CTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCCTG
* * *
116249971 CTAGGCAATAAGCCTGATATAATACACTGGCATAAAGCTTG
1 CTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTG
116250012 CTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTG
1 CTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTG
116250053 CTAGGCAATAA
1 CTAGGCAATAA
116250064 AGCCCGAATA
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
41 83 0.67
42 3 0.02
43 37 0.30
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
CTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTG
Found at i:116250018 original size:84 final size:82
Alignment explanation
Indices: 116249887--116250063 Score: 250
Period size: 84 Copynumber: 2.1 Consensus size: 82
116249877 ATAAAATTTT
*
116249887 CTAGGC-ATAAAGCCTAGTATAATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATATAAT
1 CTAGGCAAT-AAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAT
*
116249951 ACACCGGCATATAAAGCCTA
65 ACACCGGC--ACAAAGCCTA
* * *
116249971 CTAGGCAATAAGCCT-GATATAATACACTGGCATAAAGCTTGCTAGGCAATAAGCCTGATATAAT
1 CTAGGCAATAAGCCTAG-TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAT
*
116250035 ACACCGGCACAAAGCCTG
65 ACACCGGCACAAAGCCTA
116250053 CTAGGCAATAA
1 CTAGGCAATAA
116250064 AGCCCGAATA
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
82 19 0.22
83 1 0.01
84 63 0.74
85 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (82 bp):
CTAGGCAATAAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATA
CACCGGCACAAAGCCTA
Found at i:116253129 original size:47 final size:47
Alignment explanation
Indices: 116253070--116253275 Score: 340
Period size: 47 Copynumber: 4.4 Consensus size: 47
116253060 GATGTACAAG
* * *
116253070 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
116253117 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
116253164 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
116253211 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
116253258 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
116253276 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 149 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:116253222 original size:25 final size:25
Alignment explanation
Indices: 116253100--116253225 Score: 74
Period size: 25 Copynumber: 5.3 Consensus size: 25
116253090 CTAATGGCCG
*
116253100 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTAT
* * *
116253125 ATGTGAT-AAGGCCG-AA-TG-GCCA-
1 ATGTGATGAATG-TGAAAGTGTG-TAT
*
116253147 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTAT
** *
116253172 ATGTGAT-AA-G-GCCGAGTG-GCCA-
1 ATGTGATGAATGTG-AAAGTGTG-TAT
116253194 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGATGAATGTGAAAGTGTGTAT
116253219 ATGTGAT
1 ATGTGAT
116253226 AAGGCCTAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 28
0.63 0.13 0.24
Matches are distributed among these distances:
22 16 0.22
23 16 0.22
24 16 0.22
25 24 0.33
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTGTAT
Found at i:116258236 original size:34 final size:34
Alignment explanation
Indices: 116258193--116258260 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
116258183 ACATTTTTGA
* *
116258193 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
*
116258226 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCTAAGGCCCAAGACTGT
116258261 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:116261043 original size:25 final size:25
Alignment explanation
Indices: 116260996--116261042 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
116260986 AGTTACTAAG
116260996 TTTAAAAGTAACATATAAGTTTTAA
1 TTTAAAAGTAACATATAAGTTTTAA
*
116261021 TTTAAAAGTAAC-TATAAATTTT
1 TTTAAAAGTAACATATAAGTTTT
116261043 TTAACTAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (25 bp):
TTTAAAAGTAACATATAAGTTTTAA
Found at i:116261049 original size:15 final size:16
Alignment explanation
Indices: 116261029--116261058 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
116261019 AATTTAAAAG
116261029 TAACTA-TAAATTTTT
1 TAACTAGTAAATTTTT
116261044 TAACTAGTAAATTTT
1 TAACTAGTAAATTTT
116261059 AGATTCCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (16 bp):
TAACTAGTAAATTTTT
Found at i:116263774 original size:14 final size:14
Alignment explanation
Indices: 116263755--116263781 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
116263745 CATAATTGAT
116263755 AAAATTTTCATATC
1 AAAATTTTCATATC
116263769 AAAATTTTCATAT
1 AAAATTTTCATAT
116263782 AACAATCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATTTTCATATC
Found at i:116267966 original size:16 final size:16
Alignment explanation
Indices: 116267945--116268006 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
116267935 TATTTTATTA
116267945 AATTATATTTAATAAT
1 AATTATATTTAATAAT
*
116267961 AATTATATTAAAATATGATT
1 AATTATATT-TAATA--A-T
*
116267981 AAATTATTTTTAATAAT
1 -AATTATATTTAATAAT
*
116267998 AATTCTATT
1 AATTATATT
116268007 AAAATTTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
16 16 0.44
17 5 0.14
18 1 0.03
19 1 0.03
20 5 0.14
21 8 0.22
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (16 bp):
AATTATATTTAATAAT
Found at i:116267982 original size:37 final size:37
Alignment explanation
Indices: 116267941--116268011 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
116267931 TATTTATTTT
116267941 ATTAAATTATATTTAATAATAATTATATTAAAATATG
1 ATTAAATTATATTTAATAATAATTATATTAAAATATG
* *
116267978 ATTAAATTATTTTTAATAATAATTCTATTAAAAT
1 ATTAAATTATATTTAATAATAATTATATTAAAAT
116268012 TTAATAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (37 bp):
ATTAAATTATATTTAATAATAATTATATTAAAATATG
Found at i:116268404 original size:26 final size:27
Alignment explanation
Indices: 116268358--116268413 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
116268348 ACTGTTATAA
* *
116268358 AATAAAGAGAGATAGAGAG-AATAAAG
1 AATAAAGAGAAATAGAAAGAAATAAAG
*
116268384 AATAAAGA-AAATATGAAAGAAATAGAG
1 AATAAAGAGAAATA-GAAAGAAATAAAG
116268411 AAT
1 AAT
116268414 GTACTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
25 4 0.16
26 12 0.48
27 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.14
Consensus pattern (27 bp):
AATAAAGAGAAATAGAAAGAAATAAAG
Found at i:116271415 original size:6 final size:6
Alignment explanation
Indices: 116271394--116271431 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
116271384 ATGAAATTTG
*
116271394 AATAAA TAATAGA AATAAA AATAAA AATAAA AATAAA A
1 AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA A
116271432 GATGACACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:116283327 original size:47 final size:47
Alignment explanation
Indices: 116283271--116283400 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
116283261 GTGTGAATAA
* * ** *
116283271 TACCTTGATTTGACTACGGGCCATGATATAGGTA-TTTGGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGG-GAGAAGT
* *
116283318 TACCTTGATTTGGCTACGGGTCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGAGAAGT
*
116283365 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
116283401 TAACGATTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 70 0.96
48 3 0.04
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGAGAAGT
Found at i:116286054 original size:26 final size:26
Alignment explanation
Indices: 116286025--116286132 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
116286015 TGGTACAAAT
116286025 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
116286051 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
116286077 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
116286103 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116286129 TGAT
1 TGAT
116286133 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:116287773 original size:27 final size:27
Alignment explanation
Indices: 116287733--116287844 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
116287723 AAGCGTCCTA
116287733 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* *
116287760 GTGGCTCTGTCACATATATCTG-TCCTG
1 GTGGCTATGCCACATATATCTGAT-CTG
116287787 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* *
116287814 GTGGCTCTGCCACATATATCTATATCTG
1 GTGGCTATGCCACATATATCT-GATCTG
116287842 GTG
1 GTG
116287845 ATATCGTCAC
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 60 0.82
28 11 0.15
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACATATATCTGATCTG
Found at i:116287809 original size:54 final size:54
Alignment explanation
Indices: 116287727--116287834 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
116287717 TGGAGGAAGC
*
116287727 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCT
1 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
116287781 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
116287835 ATATCTGGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:116287861 original size:54 final size:54
Alignment explanation
Indices: 116287728--116287862 Score: 175
Period size: 54 Copynumber: 2.5 Consensus size: 54
116287718 GGAGGAAGCG
* * * *
116287728 TCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCTG
1 TCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
*
116287782 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* *
116287836 TATCTGGT-GATATCGTCACAA-TATCTG
1 T-CCTGGTGGATAT-GCCACAATTATCTG
116287863 GCAGCCTCGC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 62 0.85
55 11 0.15
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:116301612 original size:26 final size:26
Alignment explanation
Indices: 116301581--116301688 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
116301571 TGAAATGCCC
*
116301581 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
116301607 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
116301633 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
116301659 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
116301685 ATCA
1 ATCA
116301689 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Done.