Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 400 of 444
Found at i:116307119 original size:21 final size:21
Alignment explanation
Indices: 116307095--116307134 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
116307085 CCAATCCCAT
116307095 GCAT-CAGATAATAACAACATG
1 GCATGCAGA-AATAACAACATG
*
116307116 GCATGCATAAATAACAACA
1 GCATGCAGAAATAACAACA
116307135 GTCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.20, G:0.12, T:0.17
Consensus pattern (21 bp):
GCATGCAGAAATAACAACATG
Found at i:116308716 original size:26 final size:26
Alignment explanation
Indices: 116308685--116308792 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
116308675 TGAAATGCCC
*
116308685 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
116308711 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
116308737 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
116308763 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
116308789 ATCA
1 ATCA
116308793 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:116309415 original size:40 final size:40
Alignment explanation
Indices: 116309340--116309435 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
116309330 ACAACTCCGA
* *
116309340 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCATATATGGGGATAAAATCGACCCAC
* * * *
116309378 CCATCCCTACACACCATATATGGGGATATAATTGACCCAT
1 CCAACCCTACACACCATATATGGGGATAAAATCGACCCAC
116309418 CCAACCCTACACACCATA
1 CCAACCCTACACACCATA
116309436 AGGTACCGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 13 0.27
40 36 0.73
ACGTcount: A:0.35, C:0.36, G:0.11, T:0.17
Consensus pattern (40 bp):
CCAACCCTACACACCATATATGGGGATAAAATCGACCCAC
Found at i:116319106 original size:26 final size:26
Alignment explanation
Indices: 116319075--116319182 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
116319065 TGATACAAAT
116319075 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
116319101 TTATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
116319127 TGATATTGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
116319153 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116319179 TGAT
1 TGAT
116319183 GGGATTTTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:116326458 original size:41 final size:41
Alignment explanation
Indices: 116326158--116326440 Score: 385
Period size: 41 Copynumber: 6.9 Consensus size: 41
116326148 CGTTTTACCA
* * *
116326158 AAAACGCCGCTAAAAA-CGGAGCAATA-CAGGC-CTTTTTTGTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGC-GGCGC--TTTTGGT
* * *
116326199 AAAACGCCGCTAAAAA-CAGAGAAATAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
116326239 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
116326280 AAAACGCCGCTAAAATCCAGAGCATTAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
116326321 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
116326362 AAAACGCCTCTAAAAACCAGCGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
116326403 AAAACGCCGCTATAAACCAGAGCATTAGCGGCACTTTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT
116326441 TGTTAAAAAG
Statistics
Matches: 219, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
40 22 0.10
41 195 0.89
42 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:116327020 original size:7 final size:7
Alignment explanation
Indices: 116327010--116327059 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
116327000 GGTTTAAGGT
*
116327010 TTAGGTG
1 TTAGGGG
116327017 TTA-GGG
1 TTAGGGG
116327023 TT-GGGG
1 TTAGGGG
*
116327029 TTAGGAG
1 TTAGGGG
116327036 TTAGGGG
1 TTAGGGG
116327043 TTAGGGG
1 TTAGGGG
*
116327050 TTAAGGG
1 TTAGGGG
116327057 TTA
1 TTA
116327060 AGTGTTCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 9 0.24
7 28 0.76
ACGTcount: A:0.18, C:0.00, G:0.48, T:0.34
Consensus pattern (7 bp):
TTAGGGG
Found at i:116327042 original size:14 final size:13
Alignment explanation
Indices: 116326992--116327059 Score: 59
Period size: 14 Copynumber: 5.1 Consensus size: 13
116326982 TTATGGTTTA
116326992 AGGGTT-GGGGTTT
1 AGGGTTAGGGG-TT
* *
116327005 AAGGTTTAGGTGTT
1 -AGGGTTAGGGGTT
116327019 AGGGTT-GGGGTT
1 AGGGTTAGGGGTT
116327031 AGGAGTTAGGGGTT
1 AGG-GTTAGGGGTT
*
116327045 AGGGGTTAAGGGTT
1 A-GGGTTAGGGGTT
116327059 A
1 A
116327060 AGTGTTCATG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
12 8 0.18
13 8 0.18
14 24 0.53
15 5 0.11
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.34
Consensus pattern (13 bp):
AGGGTTAGGGGTT
Found at i:116327059 original size:21 final size:21
Alignment explanation
Indices: 116326968--116327059 Score: 68
Period size: 21 Copynumber: 4.5 Consensus size: 21
116326958 AGTTACTATT
* * * *
116326968 TTAAGGTTTAGGGATTATGGT
1 TTAAGGGTTAGGGGTTAGGGG
*
116326989 TTAAGGGTT-GGGGTTTA-AGG
1 TTAAGGGTTAGGGG-TTAGGGG
*
116327009 TTTAGGTGTTA-GGGTT-GGGG
1 TTAAGG-GTTAGGGGTTAGGGG
116327029 TT-AGGAGTTAGGGGTTAGGGG
1 TTAAGG-GTTAGGGGTTAGGGG
116327050 TTAAGGGTTA
1 TTAAGGGTTA
116327060 AGTGTTCATG
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
19 7 0.12
20 20 0.35
21 27 0.47
22 3 0.05
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAGGGG
Found at i:116331691 original size:19 final size:19
Alignment explanation
Indices: 116331667--116331709 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
116331657 CGGCTCAAAT
116331667 GAAATTAACAGTAATTTGG
1 GAAATTAACAGTAATTTGG
116331686 GAAATTAACAGTAATTTGG
1 GAAATTAACAGTAATTTGG
116331705 GAAAT
1 GAAAT
116331710 AAGAGCTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (19 bp):
GAAATTAACAGTAATTTGG
Found at i:116331832 original size:19 final size:19
Alignment explanation
Indices: 116331810--116331850 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
116331800 TTTATTGATA
116331810 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
116331828 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
116331847 TTTT
1 TTTT
116331851 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:116332485 original size:26 final size:26
Alignment explanation
Indices: 116332454--116332562 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
116332444 TGATACAAAT
*
116332454 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
116332480 TTATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116332506 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
116332532 TGGTAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116332558 TGATA
1 TGATA
116332563 GGAATTTCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:116335752 original size:33 final size:34
Alignment explanation
Indices: 116335696--116335779 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 34
116335686 ACATCGTCGT
*
116335696 TCCAACCAAACACACCAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACCAGATGCTCACAAGAGCCAA
** * * *
116335731 TCCCTCCAACACATCA-ATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAGATGCTCACAAGAGCCAA
116335764 TCCAACCAACACACCA
1 TCCAACCAACACACCA
116335780 AACAGAGAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
33 27 0.68
34 8 0.20
35 5 0.12
ACGTcount: A:0.39, C:0.39, G:0.08, T:0.13
Consensus pattern (34 bp):
TCCAACCAACACACCAGATGCTCACAAGAGCCAA
Found at i:116338941 original size:20 final size:20
Alignment explanation
Indices: 116338906--116338956 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
116338896 GCAAAACAAG
**
116338906 AGTATCGATA-TTTATTATT
1 AGTATCGATACTTTATTAAA
*
116338925 TGTATCGATACTTTATTAAA
1 AGTATCGATACTTTATTAAA
116338945 AGTATCGATACT
1 AGTATCGATACT
116338957 CATATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
AGTATCGATACTTTATTAAA
Found at i:116338964 original size:20 final size:20
Alignment explanation
Indices: 116338926--116338973 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
116338916 TTTATTATTT
*
116338926 GTATCGATACTTTATTAAAA
1 GTATCGATACTATATTAAAA
116338946 GTATCGATACTCATA-TAAAA
1 GTATCGATACT-ATATTAAAA
116338966 --ATCGATAC
1 GTATCGATAC
116338974 CATTTTAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 8 0.31
20 16 0.62
21 2 0.08
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (20 bp):
GTATCGATACTATATTAAAA
Found at i:116339541 original size:2 final size:2
Alignment explanation
Indices: 116339534--116339590 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
116339524 TATTATCTTC
116339534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116339576 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
116339591 CAGGCACCTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:116341611 original size:43 final size:43
Alignment explanation
Indices: 116341454--116341612 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
116341444 TATGTGTTTC
** * *
116341454 CGTGTAAGACCATGTCTGGGATGTTGGCAACGACT-TATGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGA-TATTTGA-TTA
** *
116341498 CGTGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
* * *
116341540 CGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGATTG
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
* *
116341583 CATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
116341613 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 31 0.32
43 39 0.40
44 27 0.28
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:116343302 original size:40 final size:40
Alignment explanation
Indices: 116343258--116343443 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
116343248 GCTACTCGTT
* * *
116343258 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
116343298 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
116343338 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
116343378 CAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
116343419 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
116343444 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:116349093 original size:84 final size:84
Alignment explanation
Indices: 116349005--116349324 Score: 453
Period size: 84 Copynumber: 3.8 Consensus size: 84
116348995 TACTGGCACC
* *
116349005 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAAAGTGCATCATTGGATAAACCG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
116349070 AAGCAATCATACTAAAACA
66 AAGCAATCATACTAAAACA
* * * * * *
116349089 TAAGTGCATCATCAGATAAACCAAAGCAATCATACTAGCACATAAGTGCCTTATCAGATAAACTG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
**
116349154 AAGCAATCATACTGGAACA
66 AAGCAATCATACTAAAACA
* * *
116349173 TAAGTGCATCATTGAATAAACCGAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
* * **
116349238 AAGTAATCATACTATAATG
66 AAGCAATCATACTAAAACA
* *
116349257 TAAGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATAACTGCATCATC-GACTAAACC
1 TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGA-TAAACC
116349321 GAAG
65 GAAG
116349325 TATAAACTTG
Statistics
Matches: 207, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
83 2 0.01
84 205 0.99
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (84 bp):
TAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCG
AAGCAATCATACTAAAACA
Found at i:116349149 original size:126 final size:125
Alignment explanation
Indices: 116348922--116349324 Score: 445
Period size: 126 Copynumber: 3.2 Consensus size: 125
116348912 CTGGAACCGT
** * * * * *
116348922 AGTGCATCATCAGATAAATCGAAGGATAT-ATACTAGAACACAT-AGTGCATCTTCGAGAAATCA
1 AGTGCATCATTGGATAAACCGAAGCA-ATCATACTA-AA-ACATAAGTGCATCATCGATAAACCA
* * *
116348985 GAAGCAAAT-ATACTGGCACCTAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAA
63 -AAGC-AATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
116349049 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATAAGTGCATCATCAGATAAACCAAA
1 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATAAGTGCATCATC-GATAAACCAAA
* * * ** *
116349114 GCAATCATACTAGCACATAAGTGCCTTATCAGATAAACTGAAGCAATCATACTGGAACATA
65 GCAATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
* *** *
116349175 AGTGCATCATTGAATAAACCGAAGCAATCATACTGGCACATAAGTGCATCATCGGATAAACCGAA
1 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATAAGTGCATCATC-GATAAACCAAA
* ** ** *
116349240 GTAATCATACTATAATGTAAGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATA
65 GCAATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
* *
116349301 ACTGCATCA-TCGACTAAACCGAAG
1 AGTGCATCATTGGA-TAAACCGAAG
116349325 TATAAACTTG
Statistics
Matches: 234, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
125 9 0.04
126 190 0.81
127 35 0.15
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (125 bp):
AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATAAGTGCATCATCGATAAACCAAAG
CAATCATACTAGCACATAAGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACATA
Found at i:116349319 original size:42 final size:42
Alignment explanation
Indices: 116348922--116349324 Score: 404
Period size: 42 Copynumber: 9.6 Consensus size: 42
116348912 CTGGAACCGT
* * *
116348922 AGTGCATCATCAGATAAATCGAAGGATAT-ATACTAGAACACAT-
1 AGTGCATCATCAGATAAACCGAAGCA-ATCATACT-G-GCACATA
* * * *
116348965 AGTGCATCTTCGAGA-AATCAGAAGCAAAT-ATACTGGCACCTA
1 AGTGCATCATC-AGATAAACCGAAGC-AATCATACTGGCACATA
* * *
116349007 AGTGCATCATCGGATAAACCAAAGCAATCATACTGGCACAAA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
** ***
116349049 AGTGCATCATTGGATAAACCGAAGCAATCATACTAAAACATA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
* *
116349091 AGTGCATCATCAGATAAACCAAAGCAATCATACTAGCACATA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
* * * *
116349133 AGTGCCTTATCAGATAAACTGAAGCAATCATACTGGAACATA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
*
116349175 AGTGCATCAT-TGAATAAACCGAAGCAATCATACTGGCACATA
1 AGTGCATCATCAG-ATAAACCGAAGCAATCATACTGGCACATA
* * *** **
116349217 AGTGCATCATCGGATAAACCGAAGTAATCATACTATAATGTA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
** *
116349259 AGTGCATCATGGGATAAACCAAAGCAATCATACTGGCACATA
1 AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
*
116349301 ACTGCATCATC-GACTAAACCGAAG
1 AGTGCATCATCAGA-TAAACCGAAG
116349325 TATAAACTTG
Statistics
Matches: 298, Mismatches: 54, Indels: 17
0.81 0.15 0.05
Matches are distributed among these distances:
41 12 0.04
42 258 0.87
43 24 0.08
44 4 0.01
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AGTGCATCATCAGATAAACCGAAGCAATCATACTGGCACATA
Found at i:116349402 original size:16 final size:18
Alignment explanation
Indices: 116349381--116349414 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
116349371 TATAGTTCAA
116349381 TTCAATTT-TCAT-AATT
1 TTCAATTTATCATCAATT
116349397 TTCAATTTATCATCAATT
1 TTCAATTTATCATCAATT
116349415 AACCATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (18 bp):
TTCAATTTATCATCAATT
Found at i:116350190 original size:86 final size:85
Alignment explanation
Indices: 116350089--116350259 Score: 333
Period size: 86 Copynumber: 2.0 Consensus size: 85
116350079 AGATCCCATG
116350089 ATAAAAAATTATAAAAATAAAAAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGCTA
1 ATAAAAAATTATAAAAATAAAAAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGCTA
116350154 GCTATCAATGGCGATTCTTT
66 GCTATCAATGGCGATTCTTT
116350174 ATAAAAAATCTATAAAAATAAAAAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGCT
1 ATAAAAAAT-TATAAAAATAAAAAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGCT
116350239 AGCTATCAATGGCGATTCTTT
65 AGCTATCAATGGCGATTCTTT
116350260 CTCTTTTTCT
Statistics
Matches: 85, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 9 0.11
86 76 0.89
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (85 bp):
ATAAAAAATTATAAAAATAAAAAAAATAGCTTAGGGACTTACTTACAAATAATGGTCGAAAGCTA
GCTATCAATGGCGATTCTTT
Found at i:116351775 original size:21 final size:21
Alignment explanation
Indices: 116351749--116351793 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
116351739 TTATCAAAGA
116351749 AGGCATAAGGTTCTGGAATCC
1 AGGCATAAGGTTCTGGAATCC
116351770 AGGCATAAGGTTCTGGAATCC
1 AGGCATAAGGTTCTGGAATCC
116351791 AGG
1 AGG
116351794 GTAAAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (21 bp):
AGGCATAAGGTTCTGGAATCC
Found at i:116354916 original size:15 final size:15
Alignment explanation
Indices: 116354896--116354928 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
116354886 AGTAAAGTAA
116354896 ATAATA-ATACTATAT
1 ATAATATATA-TATAT
116354911 ATAATATATATATAT
1 ATAATATATATATAT
116354926 ATA
1 ATA
116354929 TGTATATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATATATATAT
Found at i:116355049 original size:127 final size:124
Alignment explanation
Indices: 116354870--116355096 Score: 293
Period size: 127 Copynumber: 1.8 Consensus size: 124
116354860 TATAATGATG
* * *
116354870 ATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAATATATATATATATATGTATA
1 ATAATAAAAATATTAAAGTAAAGTAAAAAATAATACTATATATAATATATATATATATA--TACA
*
116354935 TAATAGAA-ATACAC-ACTACTATAATAATAATAATAATAAATATAGAAATACAGAAAGCAAAT
64 TAA-A-AATATACACTAATA-TATAATAATAATAATAATAAATATAGAAATACAGAAAGCAAAT
*
116354997 ATAATAAAAATATTAAATTAAAGTAATAAAAAATAATACTATATAT-A-A-ATATATATATATAC
1 ATAATAAAAATATTAAAGTAAAG---TAAAAAATAATACTATATATAATATATATATATATATAC
*
116355059 ATAAAAATATACACTAATATATAATAATAATAGTAATA
63 ATAAAAATATACACTAATATATAATAATAATAATAATA
116355097 GCAAAAATAA
Statistics
Matches: 89, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
123 2 0.02
124 25 0.28
125 9 0.10
127 32 0.36
128 1 0.01
129 1 0.01
130 19 0.21
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (124 bp):
ATAATAAAAATATTAAAGTAAAGTAAAAAATAATACTATATATAATATATATATATATATACATA
AAAATATACACTAATATATAATAATAATAATAATAAATATAGAAATACAGAAAGCAAAT
Found at i:116355177 original size:3 final size:3
Alignment explanation
Indices: 116355171--116355240 Score: 79
Period size: 3 Copynumber: 22.0 Consensus size: 3
116355161 AATAGGGGTG
*
116355171 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
116355216 ATA CATA TATA TATA TATA ATA ATA
1 ATA -ATA -ATA -ATA -ATA ATA ATA
116355241 GTAGTCAGAA
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
2 1 0.02
3 46 0.74
4 15 0.24
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:116355328 original size:3 final size:3
Alignment explanation
Indices: 116355315--116355392 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
116355305 GAGGGTATAT
116355315 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
116355359 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
116355393 AAAATAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
2 7 0.11
3 43 0.70
4 9 0.15
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:116355339 original size:12 final size:12
Alignment explanation
Indices: 116355315--116355392 Score: 72
Period size: 12 Copynumber: 6.3 Consensus size: 12
116355305 GAGGGTATAT
116355315 ATAATAT-AATA
1 ATAATATAAATA
116355326 ATAATATAAATA
1 ATAATATAAATA
116355338 ATAATATATACATGA
1 ATAATATA-A-AT-A
116355353 GA-AATA-ATAATA
1 -ATAATATA-AATA
116355365 ATAATATAAATA
1 ATAATATAAATA
* *
116355377 ATAGTAAAAATA
1 ATAATATAAATA
116355389 ATAA
1 ATAA
116355393 AAAATAAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
11 8 0.14
12 34 0.60
13 4 0.07
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:116355345 original size:30 final size:30
Alignment explanation
Indices: 116355311--116355403 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 30
116355301 TGGAGAGGGT
116355311 ATATATAATATAATAATAATATAAATAATA
1 ATATATAATATAATAATAATATAAATAATA
*
116355341 ATATATACATGAGAAATAATAATAATAATATAAATA
1 ATATATA-AT-A-TAATAATAAT-ATAA-AT-AATA
* *
116355377 ATAGTA-AAAATAATAA-AAAATAAATAA
1 ATA-TATAATATAATAATAATATAAATAA
116355404 AACAAAGTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
29 2 0.04
30 9 0.17
31 6 0.12
32 3 0.06
33 14 0.27
34 5 0.10
35 3 0.06
36 8 0.15
37 2 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATATATAATATAATAATAATATAAATAATA
Found at i:116355388 original size:27 final size:27
Alignment explanation
Indices: 116355315--116355403 Score: 82
Period size: 26 Copynumber: 3.5 Consensus size: 27
116355305 GAGGGTATAT
* *
116355315 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
116355341 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
116355365 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
*
116355392 A-AAAATAAATAA
1 ATAATATAAATAA
116355404 AACAAAGTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
23 2 0.04
24 10 0.20
25 11 0.22
26 14 0.28
27 10 0.20
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:116355405 original size:9 final size:10
Alignment explanation
Indices: 116355320--116355404 Score: 72
Period size: 9 Copynumber: 8.8 Consensus size: 10
116355310 TATATATAAT
116355320 ATAAT-AATA
1 ATAATAAATA
116355329 AT-ATAAATA
1 ATAATAAATA
*
116355338 ATAATATATA
1 ATAATAAATA
* *
116355348 CATGAGAAATA
1 -ATAATAAATA
116355359 ATAAT-AATA
1 ATAATAAATA
116355368 AT-ATAAATA
1 ATAATAAATA
*
116355377 ATAGTAAA-A
1 ATAATAAATA
*
116355386 ATAATAAAAA
1 ATAATAAATA
116355396 ATAAATAAA
1 AT-AATAAA
116355405 ACAAAGTTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
8 4 0.07
9 28 0.46
10 16 0.26
11 13 0.21
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (10 bp):
ATAATAAATA
Found at i:116356425 original size:68 final size:68
Alignment explanation
Indices: 116356308--116356605 Score: 420
Period size: 68 Copynumber: 4.4 Consensus size: 68
116356298 TCTTCTTCAA
* * *
116356308 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCA-GGAAGGAGAAA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-AAGAGA
*
116356372 TCCA
65 TCCG
* * * *
116356376 CTGAAACTTCAAGGAGATCTGCCGTGGCTTTTAGCCGCTCTAACACCATTTCA-GGAAGAAGAGG
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-AAGAGA
*
116356440 TTCG
65 TCCG
* *
116356444 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAACCGCTCCAATGCCATTTCAGGGAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
**
116356509 TTG
66 CCG
* *
116356512 TTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
116356577 CCG
66 CCG
*
116356580 CTGAAACTTCAAGGAGATCTGTTGTG
1 CTGAAACTTCAAGGAGATCTGCTGTG
116356606 CCTTCAAGAA
Statistics
Matches: 206, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
68 202 0.98
69 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
CCG
Found at i:116356998 original size:87 final size:87
Alignment explanation
Indices: 116356718--116357657 Score: 1237
Period size: 87 Copynumber: 10.8 Consensus size: 87
116356708 ATCTATAATT
* * * * * * * * *
116356718 TTCAGCCTATTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCTCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
*
116356783 TTAGGGGGTTAAGATCTTGAAAA
66 TTAGGGGGTTAAGATC-TGTAAA
* * * * * *
116356806 TCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGTCTATCGCCTTCGATCTGTTTCCCTACTAC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
116356871 TTA-GGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * ** *
116356892 TTCCACTTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCACCTTTTATCTGTTTCCCTAGTGC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
116356957 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
116356979 TTTAACCTGTTACCCTACTGCTT-AGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTAC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
*
116357043 TTAGGGGATTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * *
116357065 TTCCACCTGTTACCTTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTAC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
*
116357130 TTAGGGGGTTAAGATTTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * *
116357152 TTCCACCTGTTACCCTACTGCTT-AGAGGTTTAAGGTCCATCGCCTTTGATCTGATTCCCTACTG
1 TTCAACCTGTTACCCTACTGCTTAAG-GGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTG
116357216 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * * * *
116357239 TTCCACATGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGTCTTTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
*
116357304 TTA-GGGGTTAAGATTTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * *
116357325 TCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATATGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* *
116357390 TTAAGGGTTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * * *
116357412 TTTAGCCTGTTACCCTACTACTT-AGGGAGTTAAGG-CCTATCGCTTTCGATCTGTTTCCCTACT
1 TTCAACCTGTTACCCTACTGCTTAAGGG-TTTAAGGTCC-ATCGCCTTCGATCTGTTTCCCTACT
116357475 GCTTAGGGGGTTAAGATCTGTAAA
64 GCTTAGGGGGTTAAGATCTGTAAA
* * *
116357499 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
116357564 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * * * * * *
116357586 TTTAGCTTGTTACCCTACTACTT-AGGGAGTTAAGGCCCGTCGCTTTCGATCTGTTTCCCTACTG
1 TTCAACCTGTTACCCTACTGCTTAAGGG-TTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTG
116357650 CTTAGGGG
65 CTTAGGGG
116357658 TCAAATCTGC
Statistics
Matches: 753, Mismatches: 89, Indels: 21
0.87 0.10 0.02
Matches are distributed among these distances:
86 225 0.30
87 466 0.62
88 62 0.08
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:116357212 original size:260 final size:262
Alignment explanation
Indices: 116356718--116357657 Score: 1294
Period size: 260 Copynumber: 3.6 Consensus size: 262
116356708 ATCTATAATT
* * * * * * * *
116356718 TTCAGCCTATTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCTCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* * *
116356783 TTAGGGGGTTAAGATCT-TGAAAATCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGTCTATC
66 TTAGGGGGTTAAGATCTGT-AAATTCCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGTCCATC
*
116356847 GCCTTCGATCTGTTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATTCCACTTGTTACCCTACT
130 GCCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCCACCTGTTACCCTACT
* * *
116356911 GCTTA-AGGGTTTAAGGTCCATCACCTTTTATCTGTTTCCCTAGTGCTTAGGGGGTTAAGATCTG
195 GCTTAGA-GGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
116356975 TAAA
259 TAAA
* *
116356979 TTTAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTAC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* * *
116357043 TTAGGGGATTAAGATCTGTAAATTCCA-CCTGTTACCTTACTGCTTAAGGGTTTAAGGTCCATCG
66 TTAGGGGGTTAAGATCTGTAAATTCCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGTCCATCG
* *
116357107 CCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATTTGTAAATTCCACCTGTTACCCTACTG
131 CCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCCACCTGTTACCCTACTG
*
116357172 CTTAGAGGTTTAAGGTCCATCGCCTTTGATCTGATTCCCTACTGCTTAGGGGGTTAAGATCTGTA
196 CTTAGAGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA
116357237 AA
261 AA
* * * *
116357239 TTCCACATGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGTCTTTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* * * * *
116357304 TTA-GGGGTTAAGATTTGTAAA-TCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCG
66 TTAGGGGGTTAAGATCTGTAAATTCCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGTCCATCG
* * * * *
116357367 CCTTCGATATGTTTCCCTACTGCTTAAGGGTTTAAGATCTGTAAATT-TAGCCTGTTACCCTACT
131 CCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCCA-CCTGTTACCCTACT
* *
116357431 ACTTAG-GGAGTTAAGG-CCTATCG-CTTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC
195 GCTTAGAGG-TTTAAGGTCC-ATCGCCTTT-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC
116357493 TGTAAA
257 TGTAAA
* *
116357499 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* * * * *
116357564 TTAGGGGGTTAAGATCTGTAAATT-TAGCTTGTTACCCTACTACTT-AGGGAGTTAAGGCCCGTC
66 TTAGGGGGTTAAGATCTGTAAATTCCAGCCTGTTACCCTACTACTTAAGGG-TTTAAGGTCCATC
* *
116357627 GCTTTCGATCTGTTTCCCTACTGCTTAGGGG
130 GCCTTCGATCTGTTTCCCTACTACTTAGGGG
116357658 TCAAATCTGC
Statistics
Matches: 604, Mismatches: 63, Indels: 24
0.87 0.09 0.03
Matches are distributed among these distances:
259 71 0.12
260 399 0.66
261 133 0.22
262 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (262 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAATTCCAGCCTGTTACCCTACTACTTAAGGGTTTAAGGTCCATCG
CCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCCACCTGTTACCCTACTG
CTTAGAGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA
AA
Found at i:116357382 original size:347 final size:344
Alignment explanation
Indices: 116356718--116357666 Score: 1345
Period size: 347 Copynumber: 2.7 Consensus size: 344
116356708 ATCTATAATT
* * * * * *
116356718 TTCAGCCTATTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCTCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGG-CCATCGCCTTCGATCTATTTCCCTACTGC
* * *
116356783 TTAGGGGGTTAAGATCTTG-AAAATCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGGTCTATC
65 TTAGGGGGTTAAGAT-TTGTAAATTCCA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATC
*
116356847 GCCTTCGATCTGTTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATTCCACTTGTTACCCTACT
128 GCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACTTGTTACCCTACT
* * * *
116356911 GCTTAAGGGTTTAAGGTCCATCACCTTTTATCTGTTTCCCTAGTGCTTAGGGGGTTAAGATCTGT
193 GCTTAGGGGTTTAAGGTCCATC-GCTTTGATCTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGT
** *
116356976 AAATTTAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACT
256 AAATCCAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCCATCGCCTTCGATATGTTTCCCTACT
*
116357041 ACTTAGGGGATTAAGATCTGTAAA
321 ACTTAAGGGATTAAGATCTGTAAA
* *
116357065 TTCCA-CCTGTTACCTTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTATTTCCCTACTA
1 TT-CAGCCTGTTACCCTACTGCTTAAGGGTTTAAGG-CCATCGCCTTCGATCTATTTCCCTACTG
*
116357129 CTTAGGGGGTTAAGATTTGTAAATTCCACCTGTTACCCTACTGCTTAGAGGTTTAAGGTCCATCG
64 CTTAGGGGGTTAAGATTTGTAAATTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCG
* * *
116357194 CCTTTGATCTGATTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACATGTTACCCTACTG
129 CCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACTTGTTACCCTACTG
*
116357259 CTTAGGGGTTTAAGGTCCATCGTCTTTGATCTGTTTCCCTACTGCTTAGGGGTTAAGATTTGTAA
194 CTTAGGGGTTTAAGGTCCATCG-CTTTGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAA
* *
116357324 ATCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATATGTTTCCCTACTG
258 ATCCAACCTGTTACCCTACTGCTTA-GGGTTTAAGGTCCATCGCCTTCGATATGTTTCCCTACTA
*
116357389 CTTAAGGGTTTAAGATCTGTAAA
322 CTTAAGGGATTAAGATCTGTAAA
* * * * *
116357412 TTTAGCCTGTTACCCTACTACTT-AGGGAGTTAAGGCCTATCGCTTTCGATCTGTTTCCCTACTG
1 TTCAGCCTGTTACCCTACTGCTTAAGGG-TTTAAGGCC-ATCGCCTTCGATCTATTTCCCTACTG
* * * *
116357476 CTTAGGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCG
64 CTTAGGGGGTTAAGATTTGTAAATTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCG
*
116357541 CCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATT-TAGCTTGTTACCCTACT
129 CCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCA-CTTGTTACCCTACT
* * * *
116357605 ACTTAGGGAG-TTAAGGCCCGTCGCTTTCGATCTGTTTCCCTACTGCTTAGGGGTCAA-ATCTG
193 GCTTAGGG-GTTTAAGGTCCATCGCTTT-GATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTG
116357667 CTATCTTCAA
Statistics
Matches: 541, Mismatches: 50, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
346 115 0.21
347 423 0.78
348 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (344 bp):
TTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCATCGCCTTCGATCTATTTCCCTACTGCT
TAGGGGGTTAAGATTTGTAAATTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCC
TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACTTGTTACCCTACTGCT
TAGGGGTTTAAGGTCCATCGCTTTGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATC
CAACCTGTTACCCTACTGCTTAGGGTTTAAGGTCCATCGCCTTCGATATGTTTCCCTACTACTTA
AGGGATTAAGATCTGTAAA
Found at i:116357903 original size:132 final size:132
Alignment explanation
Indices: 116357659--116358848 Score: 1930
Period size: 132 Copynumber: 9.0 Consensus size: 132
116357649 GCTTAGGGGT
* * * *
116357659 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATTCTGAAATCTTCAATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
116357724 CTTCACTGTAAGCACAGTAATGTCAGATCTGCCATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116357789 GC
131 GC
* *
116357791 CAAATCTGCTATTTTTAAATTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
116357856 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116357921 GC
131 GC
*
116357923 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
116357988 CTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGCTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358053 GC
131 GC
** * * *
116358055 CAAATCTATTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTTGATCTA
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
116358120 CTTTACTGTAAGCACACGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358185 GC
131 GC
* *
116358187 CAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAGGAATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * *
116358252 CTTCACTGTAAGTACAGGAATGTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358317 GC
131 GC
* *
116358319 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGACCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
116358384 CTTCACTGTAAGCACAGGAATATCAGATCTGTTATCTTCGATCTATTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358449 GC
131 GC
* *
116358451 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGATCTA
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* *
116358516 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTGTTCCCTATAAGCACAGGGTT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358581 GC
131 GC
*
116358583 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGAATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * * * *
116358648 CTTCATTGTAAGTACAGGAATGTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358713 GC
131 GC
* **
116358715 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCACAAAGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
* * *
116358780 CTTCACTGTAAGCACAGGAATGTCAGATCTGTTATTTTCGATCTATTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
116358845 GC
131 GC
116358847 CA
1 CA
116358849 TGCTGAAATC
Statistics
Matches: 980, Mismatches: 78, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 980 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
CAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
GC
Found at i:116358930 original size:87 final size:88
Alignment explanation
Indices: 116357657--116358957 Score: 722
Period size: 88 Copynumber: 14.8 Consensus size: 88
116357647 CTGCTTAGGG
* * * * * *
116357657 GTCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATTCTGAAATCTTCAAT
1 GTCAGATCTGCTATTTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
*
116357721 CTGCTTCACTGTAAGCACAGTAAT
65 CTGCTTCACTGTAAGCACAGGAAT
* * * * * * * **
116357745 GTCAGATCTGCCATCTTCGATATGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATTTTTAA
1 GTCAGATCTGCTATTTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCTG-AAATCTTCG
* * *
116357809 AT-TG-TTCCCTATAAGCACAGGGAT
63 ATCTGCTTCACTGTAAGCACAGGAAT
* ** * * * * * ** *
116357833 G-C-CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTT
1 GTCAGAT-CTGCTATTTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTTC
* * * *
116357895 GATCTG-TTCCCTATAAACACAGGGAT
62 GATCTGCTTCACTGTAAGCACAGGAAT
* * * *
116357921 GCCAAATCTGTTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
1 GTCAGATCTGCTATTTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
116357985 CTGCTTCACTGTAAGCACAGGAAT
65 CTGCTTCACTGTAAGCACAGGAAT
* * * * *
116358009 GTCAGATCTGTTATCTTCGATCTGCTCCCTATAAGCACAGGGATGCCAAAT-CT-ATTATTTTC-
1 GTCAGATCTGCTATTTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCTGA-AATCTTCG
* * *
116358071 AACTTG-TTCCCTATAAGCACAAGG-AT
63 ATC-TGCTTCACTGTAAGCAC-AGGAAT
* ** * ** * * * * **
116358097 G-C-CATGCTGAAATCTTT-GATCTACTTTACTGTAAGCACACGAATGTCA-GATCTGTTATCTT
1 GTCAGAT-CTGCTAT-TTTCGATCT-GTTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTT
* * *
116358158 CGATCTG-TTCCCTATAAGCACAGGGAT
61 CGATCTGCTTCACTGTAAGCACAGGAAT
* * * * *
116358185 GCCAAATCTACTATTTTC-AACTTGTTCCCTATAAGCACAGGAATGCCATGCTGAAATCTTCGAT
1 GTCAGATCTGCTATTTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
*
116358249 CTGCTTCACTGTAAGTACAGGAAT
65 CTGCTTCACTGTAAGCACAGGAAT
* * * * ** *
116358273 GTTAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGATGCCAAAT-CTGTTATTTTC-A
1 GTCAGATCTGCTATTTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA
* * * *
116358336 ACTTG-TTCCCTATAAGCACAGGGAT
64 TC-TGCTTCACTGTAAGCACAGGAAT
* ** * * * * * ** **
116358361 G-C-CATGCTGAAATCTTCGACCTGCTTCACTGTAAGCACAGGAATATCA-GATCTGTTATCTTC
1 GTCAGAT-CTGCTATTTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTTC
* * * *
116358423 GATCT-ATTCCCTATAAGCACAGGGAT
62 GATCTGCTTCACTGTAAGCACAGGAAT
* * * *
116358449 GCCAAATCTGCTATTTTC-AACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGAT
1 GTCAGATCTGCTATTTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
*
116358513 CTACTTCACTGTAAGCACAGGAAT
65 CTGCTTCACTGTAAGCACAGGAAT
* ** *
116358537 GTCAGATCTGCTATCTTT-GATCTGTTCCCTATAAGCACAGGGTTGCCAAAT-CTGCTATTTTC-
1 GTCAGATCTGCTAT-TTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCG
* * *
116358599 AACTTG-TTCCCTATAAGCACAGGAAT
63 ATC-TGCTTCACTGTAAGCACAGGAAT
* ** * ** * * * ** **
116358625 G-C-CATGCTGAAATCTTCGATCTGCTTCATTGTAAGTACAGGAATGTTA-GATCTGCTATCTTC
1 GTCAGAT-CTGCTATTTTCGATCTG-TTCCCTATAAGCACAGGGATGCCATG--CTGAAATCTTC
* * * * *
116358687 GATATG-TTCCCTATAAACACAGGGAT
62 GATCTGCTTCACTGTAAGCACAGGAAT
* * * * **
116358713 GCCAAATCTGTTATTTTC-AACTTGTTCCCTATAAGCACAAAGATGCCATGCTGAAATCTTCGAT
1 GTCAGATCTGCTATTTTCGATC-TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
116358777 CTGCTTCACTGTAAGCACAGGAAT
65 CTGCTTCACTGTAAGCACAGGAAT
* *
116358801 GTCAGATCTGTTATTTTCGATCTATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
1 GTCAGATCTGCTATTTTCGATCTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
*
116358866 TGCTTCACTG-AAGCACGGGAAT
66 TGCTTCACTGTAAGCACAGGAAT
* * *
116358888 GTTAGATCTGCTATCTTT-GATCTGTTCCCTATAAACATAGGGATGCCAAAT-CT-ACAATCTTC
1 GTCAGATCTGCTAT-TTTCGATCTGTTCCCTATAAGCACAGGGATGCC--ATGCTGA-AATCTTC
116358950 GATCTGCT
62 GATCTGCT
116358958 CTCCGCCGCT
Statistics
Matches: 943, Mismatches: 196, Indels: 148
0.73 0.15 0.11
Matches are distributed among these distances:
86 14 0.01
87 166 0.18
88 643 0.68
89 97 0.10
90 23 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (88 bp):
GTCAGATCTGCTATTTTCGATCTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
TGCTTCACTGTAAGCACAGGAAT
Found at i:116359108 original size:82 final size:82
Alignment explanation
Indices: 116358945--116359166 Score: 347
Period size: 82 Copynumber: 2.6 Consensus size: 82
116358935 AAATCTACAA
* * * *
116358945 TCTTCGATCTGCTCTCCGCC-GCTACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGA--T-C-T--GCGTAAAC
116359009 ACGTGAAAGCCAAATCAGCTATG
60 ACGTGAAAGCCAAATCAGCTATG
116359032 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCGTAAACACGTGA
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCGTAAACACGTGA
116359097 AAGCCAAATCAGCTATG
66 AAGCCAAATCAGCTATG
116359114 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGC
116359167 TTCAGCAAAC
Statistics
Matches: 130, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
82 83 0.64
84 1 0.01
85 1 0.01
86 1 0.01
87 19 0.15
88 25 0.19
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (82 bp):
TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCGTAAACACGTGA
AAGCCAAATCAGCTATG
Found at i:116365834 original size:16 final size:15
Alignment explanation
Indices: 116365815--116365868 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
116365805 AAGTAATAAA
116365815 AAATAATACTATATAT
1 AAATAATA-TATATAT
116365831 AAATATATATATATAT
1 AAATA-ATATATATAT
*
116365847 ACACTAATATATA-AT
1 A-AATAATATATATAT
116365862 -AATAATA
1 AAATAATA
116365869 GTAATAGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 6 0.18
15 2 0.06
16 20 0.59
17 6 0.18
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATAATATATATAT
Found at i:116365955 original size:3 final size:3
Alignment explanation
Indices: 116365949--116366011 Score: 74
Period size: 3 Copynumber: 20.0 Consensus size: 3
116365939 AATAGGGGTG
*
116365949 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
116365994 CATA TATA TATA ATA ATA
1 -ATA -ATA -ATA ATA ATA
116366012 GTAGTCAGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
2 1 0.02
3 43 0.78
4 11 0.20
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:116366099 original size:3 final size:3
Alignment explanation
Indices: 116366086--116366173 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
116366076 GAGGGTATAT
116366086 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
116366130 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A-A ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
116366173 A
1 A
116366174 AACAAAGATC
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
2 11 0.16
3 47 0.68
4 9 0.13
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:116366110 original size:12 final size:12
Alignment explanation
Indices: 116366086--116366169 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
116366076 GAGGGTATAT
116366086 ATAATAT-AATA
1 ATAATATAAATA
116366097 ATAATATAAATA
1 ATAATATAAATA
116366109 ATAATATATACATGA
1 ATAATATA-A-AT-A
116366124 GA-AATA-ATAATA
1 -ATAATATA-AATA
116366136 ATAATATAAATA
1 ATAATATAAATA
* *
116366148 ATAGTAAAAATA
1 ATAATATAAATA
*
116366160 ATAAAATAAA
1 ATAATATAAA
116366170 ATAAAACAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:116366116 original size:30 final size:30
Alignment explanation
Indices: 116366082--116366173 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 30
116366072 TGGAGAGGGT
116366082 ATATATAATATAATAATAATATAAATAATA
1 ATATATAATATAATAATAATATAAATAATA
*
116366112 ATATATACATGAGAAATAATAATAATAATATAAATA
1 ATATATA-AT-A-TAATAATAAT-ATAA-AT-AATA
*
116366148 ATAGTA-AAAATAATAA-AATA-AAATAA
1 ATA-TATAATATAATAATAATATAAATAA
116366174 AACAAAGATC
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
28 2 0.04
29 2 0.04
30 9 0.17
31 3 0.06
32 4 0.08
33 14 0.27
34 5 0.10
35 3 0.06
36 8 0.15
37 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATATATAATATAATAATAATATAAATAATA
Found at i:116366130 original size:21 final size:18
Alignment explanation
Indices: 116366091--116366150 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
116366081 TATATATAAT
*
116366091 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
116366109 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
116366130 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
116366148 ATA
1 ATA
116366151 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:116366848 original size:14 final size:15
Alignment explanation
Indices: 116366829--116366858 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
116366819 TATTTATTTA
116366829 TTTGGTT-TATTGGG
1 TTTGGTTATATTGGG
116366843 TTTGGTTATATTGGG
1 TTTGGTTATATTGGG
116366858 T
1 T
116366859 CCCGGGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.10, C:0.00, G:0.33, T:0.57
Consensus pattern (15 bp):
TTTGGTTATATTGGG
Found at i:116367109 original size:24 final size:24
Alignment explanation
Indices: 116367058--116367110 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
116367048 AGTTGCAATA
*
116367058 GTTTTTGGCTTTAAGGTTTTAATT
1 GTTTTTGGCTTTAAGGTTTTAATG
116367082 GTTTTTGGCTTT-AGTTGTTTTAA-G
1 GTTTTTGGCTTTAAG--GTTTTAATG
116367106 GTTTT
1 GTTTT
116367111 AATTGGTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 2 0.08
24 17 0.65
25 7 0.27
ACGTcount: A:0.13, C:0.04, G:0.23, T:0.60
Consensus pattern (24 bp):
GTTTTTGGCTTTAAGGTTTTAATG
Found at i:116367485 original size:2 final size:2
Alignment explanation
Indices: 116367478--116367518 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
116367468 TTTGACTGTT
116367478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
116367519 TAAAATAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:116370373 original size:37 final size:38
Alignment explanation
Indices: 116370310--116370404 Score: 97
Period size: 37 Copynumber: 2.6 Consensus size: 38
116370300 CAGAAAATAG
* **
116370310 TAAGATTT-ACTCAGTTA-AGCTCCATTCAATATAACGG
1 TAAGATTTGACTC-GATAGAGCTCCATTCAATATAACAA
* * * *
116370347 TATGATTTG-CTCGATTGAGCTTCATTCAGTATAACAA
1 TAAGATTTGACTCGATAGAGCTCCATTCAATATAACAA
116370384 TAAGATTTGACTCGATAGAGC
1 TAAGATTTGACTCGATAGAGC
116370405 GTACTTCTAG
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
36 2 0.04
37 34 0.74
38 10 0.22
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (38 bp):
TAAGATTTGACTCGATAGAGCTCCATTCAATATAACAA
Found at i:116375290 original size:40 final size:40
Alignment explanation
Indices: 116375169--116375309 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
116375159 CGTGCACGAA
* * * *
116375169 TGCCTTTGGGTCTTAGCCCGGATAGAATGACTC-GCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAATCAC-CAGCACAAT
* ** *
116375209 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
* ** *
116375249 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
* *
116375289 TGTCTTCGGGGCTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
116375310 GTATCATTCA
Statistics
Matches: 81, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACCAGCACAAT
Found at i:116377339 original size:80 final size:80
Alignment explanation
Indices: 116377255--116377403 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
116377245 TATGGTAACC
* * * *
116377255 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
116377319 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
116377335 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
116377400 CCGG
66 CCGG
116377404 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:116377345 original size:40 final size:38
Alignment explanation
Indices: 116377296--116377403 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
116377286 ATCACGATTT
*
116377296 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
116377336 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
116377376 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
116377404 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:116380940 original size:28 final size:29
Alignment explanation
Indices: 116380879--116380940 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 29
116380869 GTGGGATGGG
* *
116380879 AAGGGAGTAAAAGTTTTAGGGGGAAAATAG
1 AAGGGAGTAAAAATTTTA-GGGGAAAATAA
116380909 AAGGGAGTAAAAATTTT-GGGGAAAATAA
1 AAGGGAGTAAAAATTTTAGGGGAAAATAA
116380937 AAGG
1 AAGG
116380941 TTTTGGGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 14 0.47
30 16 0.53
ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19
Consensus pattern (29 bp):
AAGGGAGTAAAAATTTTAGGGGAAAATAA
Found at i:116381160 original size:9 final size:9
Alignment explanation
Indices: 116381146--116381200 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
116381136 TATAGTTTGA
*
116381146 TATTCGATT
1 TATTCGAAT
116381155 TATTCGAAT
1 TATTCGAAT
*
116381164 TATTCGAGT
1 TATTCGAAT
116381173 TAGTT-GAAT
1 TA-TTCGAAT
*
116381182 TATTCGAGT
1 TATTCGAAT
116381191 TATTCGAAT
1 TATTCGAAT
116381200 T
1 T
116381201 CAAAAACTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
8 2 0.05
9 35 0.90
10 2 0.05
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.47
Consensus pattern (9 bp):
TATTCGAAT
Found at i:116381169 original size:18 final size:18
Alignment explanation
Indices: 116381146--116381200 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
116381136 TATAGTTTGA
*
116381146 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCGAAT
116381164 TATTCGAGTTAGTT-GAAT
1 TATTCGAGTTA-TTCGAAT
116381182 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
116381200 T
1 T
116381201 CAAAAACTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 2 0.06
18 30 0.88
19 2 0.06
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.47
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:116382490 original size:42 final size:42
Alignment explanation
Indices: 116382444--116382574 Score: 135
Period size: 42 Copynumber: 3.1 Consensus size: 42
116382434 TGAGAAAGCT
*
116382444 GAAGCAAATATACTAGCACCTAAGTGCATCATCGGTCAAACC
1 GAAGCAAATATACTGGCACCTAAGTGCATCATCGGTCAAACC
* * *
116382486 GAAGCAATTATACTGGCACAC-ATAGTGCATCATTAGAT-AAACC
1 GAAGCAAATATACTGGCAC-CTA-AGTGCATCA-TCGGTCAAACC
* *
116382529 AAAGC-AATCATACTGGCACATAAGTGCATCATCGG-CTAAACC
1 GAAGCAAAT-ATACTGGCACCTAAGTGCATCATCGGTC-AAACC
116382571 GAAG
1 GAAG
116382575 TATAAACTCG
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.03
42 37 0.51
43 30 0.42
44 3 0.04
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.20
Consensus pattern (42 bp):
GAAGCAAATATACTGGCACCTAAGTGCATCATCGGTCAAACC
Found at i:116383388 original size:2 final size:2
Alignment explanation
Indices: 116383381--116383405 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
116383371 TCCCATGATA
116383381 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
116383406 AATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:116383620 original size:14 final size:13
Alignment explanation
Indices: 116383601--116383642 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 13
116383591 ATGGTTATTC
116383601 TTTAATTAATTTTA
1 TTTAATT-ATTTTA
116383615 TTTAATTATTTTAA
1 TTTAATTATTTT-A
116383629 TTATAATTATTTTA
1 TT-TAATTATTTTA
116383643 ACTTTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.19
14 11 0.42
15 10 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTATTTTA
Found at i:116383637 original size:15 final size:14
Alignment explanation
Indices: 116383601--116383650 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 14
116383591 ATGGTTATTC
116383601 TTTAATTAATTTT-A
1 TTTAATT-ATTTTAA
116383615 TTTAATTATTTTAA
1 TTTAATTATTTTAA
116383629 TTATAATTATTTTAA
1 TT-TAATTATTTTAA
116383644 CTTTAAT
1 -TTTAAT
116383651 GGCCAACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.15
14 10 0.30
15 16 0.48
16 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTAATTATTTTAA
Found at i:116385731 original size:11 final size:11
Alignment explanation
Indices: 116385715--116385741 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
116385705 TATTTCTCAG
116385715 AAAGACTTTCC
1 AAAGACTTTCC
116385726 AAAGACTTTCC
1 AAAGACTTTCC
116385737 AAAGA
1 AAAGA
116385742 ATGATTGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (11 bp):
AAAGACTTTCC
Found at i:116388370 original size:8 final size:9
Alignment explanation
Indices: 116388347--116388378 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
116388337 AATATCGATT
116388347 AATTTTTAC
1 AATTTTTAC
116388356 AATTTTTAC
1 AATTTTTAC
116388365 AATTTTTAC
1 AATTTTTAC
116388374 AATTT
1 AATTT
116388379 AGTCATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.56
Consensus pattern (9 bp):
AATTTTTAC
Found at i:116390099 original size:2 final size:2
Alignment explanation
Indices: 116390092--116390136 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
116390082 CTAATAGTGC
116390092 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
116390134 TA T
1 TA T
116390137 TAAAGTATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:116390462 original size:21 final size:21
Alignment explanation
Indices: 116390415--116390466 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
116390405 TACGTATAAC
* * *
116390415 AAAATACATATACTAATATTA
1 AAAATAAATATACTAAGAATA
* *
116390436 ATAATAAATATACTAGGAATA
1 AAAATAAATATACTAAGAATA
116390457 AAAATAAATA
1 AAAATAAATA
116390467 AAATAATAGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (21 bp):
AAAATAAATATACTAAGAATA
Found at i:116390929 original size:19 final size:20
Alignment explanation
Indices: 116390885--116390932 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
116390875 TAATGGTAAT
*
116390885 AATATTAAAATACAAAAAAG
1 AATAATAAAATACAAAAAAG
* *
116390905 AATAATAAAATATAATAAA-
1 AATAATAAAATACAAAAAAG
116390924 AATAATAAA
1 AATAATAAA
116390933 GTAATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AATAATAAAATACAAAAAAG
Found at i:116391727 original size:12 final size:13
Alignment explanation
Indices: 116391712--116391745 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
116391702 TTTATTATTA
116391712 TTTTTTATGCTTT
1 TTTTTTATGCTTT
116391725 TTTTTATATG-TTT
1 TTTTT-TATGCTTT
116391738 TTTTTTAT
1 TTTTTTAT
116391746 ATATGTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 13 0.65
14 4 0.20
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTTTTATGCTTT
Found at i:116391744 original size:14 final size:14
Alignment explanation
Indices: 116391712--116391747 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
116391702 TTTATTATTA
116391712 TTTTT-TATGCTTT
1 TTTTTATATGCTTT
*
116391725 TTTTTATATGTTTT
1 TTTTTATATGCTTT
116391739 TTTTTATAT
1 TTTTTATAT
116391748 ATGTATGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.78
Consensus pattern (14 bp):
TTTTTATATGCTTT
Found at i:116392300 original size:36 final size:35
Alignment explanation
Indices: 116392215--116392314 Score: 173
Period size: 35 Copynumber: 2.8 Consensus size: 35
116392205 TTTAATGGGT
*
116392215 ATTGGGTTGTATTTGGGTTTTAGGGGGTTTGGGTA
1 ATTGGGTTGTATTTGGGTTTTAGGGGGTTTGGATA
*
116392250 ATTGGGTTGTATTTGGATTTTAGGGGGTTTGGATA
1 ATTGGGTTGTATTTGGGTTTTAGGGGGTTTGGATA
116392285 ATTGGGGTTGTATTTGGGTTTTAGGGGGTT
1 ATT-GGGTTGTATTTGGGTTTTAGGGGGTT
116392315 AGTGGGTTGT
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
35 36 0.59
36 25 0.41
ACGTcount: A:0.13, C:0.00, G:0.41, T:0.46
Consensus pattern (35 bp):
ATTGGGTTGTATTTGGGTTTTAGGGGGTTTGGATA
Found at i:116394881 original size:47 final size:48
Alignment explanation
Indices: 116394806--116394896 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 48
116394796 GTTTCTGAGT
*
116394806 CTATCCAATCTGAGACTTCTTTAACTTAGTTTCCATAAGAAAAAAAGC
1 CTATCCAATATGAGACTTCTTTAACTTAGTTTCCATAAGAAAAAAAGC
* ** *
116394854 CTATCCAATATG-GATTTCTTTTGCTTAGTTTCCATCAGAAAAA
1 CTATCCAATATGAGACTTCTTTAACTTAGTTTCCATAAGAAAAA
116394897 CAGTAGATGG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
47 27 0.71
48 11 0.29
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (48 bp):
CTATCCAATATGAGACTTCTTTAACTTAGTTTCCATAAGAAAAAAAGC
Found at i:116397949 original size:13 final size:15
Alignment explanation
Indices: 116397926--116397958 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
116397916 TTTGTTTTGT
116397926 TTTTCTTTCTTTTC-
1 TTTTCTTTCTTTTCA
116397940 TTTT-TTTCTTTTCA
1 TTTTCTTTCTTTTCA
116397954 TTTTC
1 TTTTC
116397959 CTCAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTCA
Found at i:116404517 original size:27 final size:27
Alignment explanation
Indices: 116404465--116404517 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
116404455 TTTACTCTTT
* **
116404465 AAAAGTATATAAAAATTAAATGTTTTA
1 AAAAATATATAAAAATTAAACATTTTA
116404492 AAAAATATATGAAAAA-TAAACATTTT
1 AAAAATATAT-AAAAATTAAACATTTT
116404518 CTAAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (27 bp):
AAAAATATATAAAAATTAAACATTTTA
Found at i:116404685 original size:21 final size:22
Alignment explanation
Indices: 116404661--116404701 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
116404651 TTTTTTCGAA
116404661 TTGAGTCGAGT-GAAATGAAAT
1 TTGAGTCGAGTCGAAATGAAAT
*
116404682 TTGAGTCGAGTCGAATTGAA
1 TTGAGTCGAGTCGAAATGAA
116404702 TCGAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (22 bp):
TTGAGTCGAGTCGAAATGAAAT
Found at i:116409630 original size:2 final size:2
Alignment explanation
Indices: 116409623--116409654 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
116409613 TAAAATTTAA
116409623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116409655 TTCCAAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116410022 original size:49 final size:49
Alignment explanation
Indices: 116409945--116410038 Score: 125
Period size: 49 Copynumber: 1.9 Consensus size: 49
116409935 TGCTATGTAA
* * * * *
116409945 TGATAAACTTGGTCTTTCATTGCCTACACTTTTATCACTATTTATACAT
1 TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACGATTTATACAT
**
116409994 TGATAAACTTAGTCTTCCACTGTTTACACTCTTATCACGATTTAT
1 TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACGATTTAT
116410039 CCCTTCTTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.44
Consensus pattern (49 bp):
TGATAAACTTAGTCTTCCACTGCCTACACTCTTATCACGATTTATACAT
Found at i:116411563 original size:30 final size:30
Alignment explanation
Indices: 116411508--116411638 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
116411498 ATAGTGAATC
*
116411508 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
116411537 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
116411567 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
116411595 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
116411625 CGCACACTTAGTGC
1 CGCACACTTAGTGC
116411639 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:116411618 original size:58 final size:58
Alignment explanation
Indices: 116411507--116411638 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
116411497 TATAGTGAAT
* * * * *
116411507 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
116411566 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
116411624 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
116411639 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:116419506 original size:30 final size:29
Alignment explanation
Indices: 116419452--116419579 Score: 140
Period size: 30 Copynumber: 4.5 Consensus size: 29
116419442 ATAGTGAATC
*
116419452 CGCACACTTA--GCTATAT-ATTTCAGCT
1 CGCACACTTAGTGCTATATAATTTCAACT
*
116419478 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAA-TTTCAACT
116419508 CGCACACTTAGTGCTATATAA--TCAAACT
1 CGCACACTTAGTGCTATATAATTTC-AACT
* * * *
116419536 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTTCAACT
116419566 CGCACACTTAGTGC
1 CGCACACTTAGTGC
116419580 CAATCTTGTC
Statistics
Matches: 89, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.11
27 2 0.02
28 29 0.33
29 1 0.01
30 46 0.52
31 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTTCAACT
Found at i:116419541 original size:58 final size:58
Alignment explanation
Indices: 116419451--116419579 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
116419441 TATAGTGAAT
* * * * *
116419451 CCGCACACTTA--GCTATATATTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
116419507 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
116419565 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
116419580 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 10 0.16
57 2 0.03
58 50 0.81
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:116423399 original size:48 final size:47
Alignment explanation
Indices: 116423277--116423604 Score: 547
Period size: 48 Copynumber: 7.0 Consensus size: 47
116423267 ATGTATGAGA
116423277 TGTATATATGTGAT-AGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
116423323 TG--TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
116423368 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG-AAG
1 TGTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
116423415 AGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
116423462 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* * *
116423510 AGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
116423557 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
116423605 TATATGTGTG
Statistics
Matches: 267, Mismatches: 7, Indels: 13
0.93 0.02 0.05
Matches are distributed among these distances:
44 10 0.04
45 34 0.13
46 38 0.14
47 60 0.22
48 82 0.31
49 43 0.16
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:116423442 original size:94 final size:93
Alignment explanation
Indices: 116423277--116423617 Score: 580
Period size: 94 Copynumber: 3.7 Consensus size: 93
116423267 ATGTATGAGA
*
116423277 TGTATAT-ATGTGAT-AGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGC
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTATATATGTGATAAGGC
116423340 CTAATGGCCAATGTGATGAATGTGAAAG
66 CTAATGGCCAATGTGATGAATGTGAAAG
116423368 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAGAGTATATATGTGATAAGG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTATATATGTGATAAGG
116423433 CCTAATGGCCAATGTGATGAATGTGAAAG
65 CCTAATGGCCAATGTGATGAATGTGAAAG
116423462 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAG
1 TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG-AA-AGTATATATGTGATAAG
* *
116423527 GCCTAATGGCCGATGTGATGAATGTGAAGG
64 GCCTAATGGCCAATGTGATGAATGTGAAAG
* *
116423557 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATGTGTGATA
1 TGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTATATATGTGATA
116423618 TGTATATGTG
Statistics
Matches: 240, Mismatches: 5, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
91 7 0.03
92 7 0.03
93 42 0.17
94 91 0.38
95 58 0.24
96 35 0.15
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (93 bp):
TGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTATATATGTGATAAGGC
CTAATGGCCAATGTGATGAATGTGAAAG
Found at i:116423517 original size:142 final size:139
Alignment explanation
Indices: 116423278--116423617 Score: 551
Period size: 142 Copynumber: 2.4 Consensus size: 139
116423268 TGTATGAGAT
116423278 GTATATATGTGAT-AGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCT
*
116423342 AATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCAATGTGATGA
66 AATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGGCCTAATGGCCAATGTGATGA
116423407 ATGTGAA-GA
130 ATGTGAAGGA
116423416 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TAT-ATGTGATAAGG
*
116423481 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
63 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
*
116423546 GAATGTGAAGGT
128 GAATGTGAAGGA
* * *
116423558 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATGTGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATA
116423618 TGTATATGTG
Statistics
Matches: 189, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
138 13 0.07
139 34 0.18
140 7 0.04
141 43 0.23
142 48 0.25
143 1 0.01
144 43 0.23
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (139 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCT
AATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
TGTGAAGGA
Found at i:116423653 original size:48 final size:48
Alignment explanation
Indices: 116423596--116423747 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
116423586 CGATGTGATG
*
116423596 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
116423644 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
116423692 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
116423740 AATGTGAA
1 AATGTGAA
116423748 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:116423828 original size:37 final size:37
Alignment explanation
Indices: 116423787--116423913 Score: 236
Period size: 37 Copynumber: 3.4 Consensus size: 37
116423777 AACTTGGAAA
* *
116423787 TATGTTCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
116423824 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
116423861 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
116423898 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
116423914 TTCGTAATAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 88 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:116425865 original size:40 final size:40
Alignment explanation
Indices: 116425819--116426155 Score: 316
Period size: 39 Copynumber: 8.6 Consensus size: 40
116425809 TGAATGATAC
**
116425819 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
116425859 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
116425899 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
116425939 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAATGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
116425978 CCGGGCTAAATTCCGAA-AGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
** * *
116426017 CCGGAATAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
116426057 CCGGGATAA-TTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * * *
116426096 CCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
116426135 CCGGGCTAGGT-CCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
116426156 ATCATGCTGG
Statistics
Matches: 257, Mismatches: 30, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
39 137 0.53
40 114 0.44
41 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:116426006 original size:79 final size:79
Alignment explanation
Indices: 116425819--116426155 Score: 300
Period size: 79 Copynumber: 4.3 Consensus size: 79
116425809 TGAATGATAC
* * ** *
116425819 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATATCCGGGCTAAGA-CCCGAAG-GCAT
1 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTG-ATATATCC-GGCTAA-ATTCCGAAGAGCAT
* * *
116425881 TTGTG-TGAGTTGTTATAC
63 TCGTGCT-AG-TGATATAT
* * * *
116425899 CCGGGTTAAGA-CCCGAAG-GCAATT-GTGCTTGTGGTTATATCCGGCTAAATTCCGAAGAGCAT
1 CCGGGCTAA-ATTCCGAAGAGC-ATTCGTGCTAGT-GATATATCCGGCTAAATTCCGAAGAGCAT
*
116425961 TCGTGCTAATGATATAT
63 TCGTGCTAGTGATATAT
* * *
116425978 CCGGGCTAAATTCCGAA-AGCATTCGTGCTAGTGATGTATCCGGAATAAGTTCCGAAGAGCATTC
1 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATATATCCGG-CTAAATTCCGAAGAGCATTC
*
116426042 GTGCTAGTGATGTAT
65 GTGCTAGTGATATAT
* *
116426057 CCGGGAT-AATTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAA-CCCGAAGAGCATTC
1 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAAATTCCGAAGAGCATTC
* *
116426120 GTGCTGGTGTTATAT
65 GTGCTAGTGATATAT
**
116426135 CCGGGCT-AGGTCCGAAGAGCA
1 CCGGGCTAAATTCCGAAGAGCA
116426156 ATCATGCTGG
Statistics
Matches: 215, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
78 66 0.31
79 104 0.48
80 40 0.19
81 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAATTCCGAAGAGCATTCG
TGCTAGTGATATAT
Found at i:116429338 original size:49 final size:49
Alignment explanation
Indices: 116429280--116429711 Score: 737
Period size: 49 Copynumber: 8.9 Consensus size: 49
116429270 GTATGAGATG
*
116429280 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
116429329 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATATGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
116429378 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
116429427 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
116429476 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
116429523 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
116429572 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
116429619 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
116429668 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
116429712 TATATGTGTG
Statistics
Matches: 365, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 88 0.24
49 277 0.76
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:116429589 original size:96 final size:96
Alignment explanation
Indices: 116429280--116429711 Score: 747
Period size: 96 Copynumber: 4.5 Consensus size: 96
116429270 GTATGAGATG
* * *
116429280 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
*
116429345 CCTAATGGCCAATGTGATGAATATGAAAGTGTA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
116429378 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAGG
116429443 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
116429476 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
116429541 TAATGGCCAATGTGATGAATGTGAAAGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
116429572 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* *
116429637 TAATGGCCGATGTGATGAATGTGAAGGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
116429668 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
116429712 TATATGTGTG
Statistics
Matches: 324, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
96 185 0.57
98 139 0.43
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (96 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:116429760 original size:48 final size:48
Alignment explanation
Indices: 116429703--116429854 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
116429693 CGATGTGATG
*
116429703 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
116429751 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
116429799 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
116429847 AATGTGAA
1 AATGTGAA
116429855 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:116429947 original size:36 final size:36
Alignment explanation
Indices: 116429907--116430019 Score: 199
Period size: 36 Copynumber: 3.1 Consensus size: 36
116429897 GTTCCGGGTG
116429907 AGACCCGATGACTACGTGTGGAGATTATGTCCGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGTA
*
116429943 AGACCCGATGACTACGTGTGGAGATTATGTCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGTA
*
116429979 AGACCTGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCC-GGTA
116430016 AGAC
1 AGAC
116430020 TTCGTAATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 65 0.89
37 8 0.11
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.25
Consensus pattern (36 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGTA
Found at i:116434110 original size:38 final size:38
Alignment explanation
Indices: 116434029--116434266 Score: 273
Period size: 38 Copynumber: 6.2 Consensus size: 38
116434019 GAATCTAGTC
* * *
116434029 ACCAGCAC-AAACTTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCTTGCGGGA-TTTAA-CCCGGATATAAT
* *
116434068 ACCAGCACTAGGCTTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
* * * *
116434106 ACCAGCACGAAGCCTGTGAGATTTAACCCGGATATATT
1 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
*
116434144 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
116434182 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
* * * * *
116434220 TCCAACA-TATAGCCTGCGGGTTTTTAAGCCCGGATATAAT
1 ACCAGCACGA-AGCTTGCGGG-ATTTAA-CCCGGATATAAT
*
116434260 TCCAGCA
1 ACCAGCA
116434267 TATAGCCTGC
Statistics
Matches: 175, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.01
38 128 0.73
39 18 0.10
40 28 0.16
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
Found at i:116437230 original size:19 final size:19
Alignment explanation
Indices: 116437206--116437243 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
116437196 ATGGTTGAGA
*
116437206 TTGGTTTGAATTCCTATTG
1 TTGGTTTGAATGCCTATTG
116437225 TTGGTTTGAATGCCTATTG
1 TTGGTTTGAATGCCTATTG
116437244 ATGTTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.50
Consensus pattern (19 bp):
TTGGTTTGAATGCCTATTG
Found at i:116440103 original size:37 final size:37
Alignment explanation
Indices: 116440050--116440171 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
116440040 TATAAAAGAA
*
116440050 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
116440087 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
116440124 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
116440161 GTCTCACCCGG
1 GTCTTACCCGG
116440172 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:116440333 original size:49 final size:49
Alignment explanation
Indices: 116440273--116440486 Score: 412
Period size: 49 Copynumber: 4.4 Consensus size: 49
116440263 TCTTGCATTA
116440273 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
116440322 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
116440371 GCCATT-GGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
116440419 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
116440468 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
116440487 CATATCTGTA
Statistics
Matches: 163, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
48 48 0.29
49 115 0.71
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:116440381 original size:97 final size:98
Alignment explanation
Indices: 116440273--116440486 Score: 412
Period size: 97 Copynumber: 2.2 Consensus size: 98
116440263 TCTTGCATTA
*
116440273 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTGGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
116440338 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
116440371 GCCATT-GGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
116440435 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
116440468 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
116440487 CATATCTGTA
Statistics
Matches: 114, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
97 96 0.84
98 18 0.16
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCACCACATCG
Found at i:116443506 original size:40 final size:41
Alignment explanation
Indices: 116443462--116443560 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
116443452 TCGATTGTCC
* * **
116443462 TCGGGACATAGCCCGG-TTATAGTGA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
116443502 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
116443543 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
116443561 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:116444285 original size:29 final size:29
Alignment explanation
Indices: 116444044--116444269 Score: 373
Period size: 29 Copynumber: 7.8 Consensus size: 29
116444034 TGTTGAAAAA
* *
116444044 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
116444073 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
116444102 CTCGCACACATAGTGCCTTGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* *
116444131 CTCGCACACATAGTGCCTCAATCACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
116444160 CTCGCACACATAGTGCCTTGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
116444189 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
116444218 CTCGCGCACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
116444247 CTCGCACACATAGTG-CTCGATTA
1 CTCGCACACATAGTGCCTCGATTA
116444270 ACAGAATTTG
Statistics
Matches: 185, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 8 0.04
29 177 0.96
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:116446403 original size:37 final size:37
Alignment explanation
Indices: 116446350--116446440 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
116446340 TATAAAAGAA
116446350 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
116446387 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
116446424 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
116446441 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:116446596 original size:49 final size:49
Alignment explanation
Indices: 116446536--116446701 Score: 314
Period size: 49 Copynumber: 3.4 Consensus size: 49
116446526 TCTTGCATTA
116446536 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
116446585 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
116446634 GCCATTGGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
116446683 GCCATTAGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
116446702 CATATCTGTA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:116479763 original size:58 final size:58
Alignment explanation
Indices: 116479677--116479789 Score: 199
Period size: 58 Copynumber: 1.9 Consensus size: 58
116479667 CTTTCTTTTA
* *
116479677 TTTAGTTTAATCTAAAAATGTTTGCTATGTGTTCTTTGTTCTTGCTTACAACAATTTC
1 TTTAGTTTAATATAAAAATGTTTGCTATGTGCTCTTTGTTCTTGCTTACAACAATTTC
*
116479735 TTTAGTTTAATATAAAAATGTTTGCTATGTGCTCTTTGTTCTTGTTTACAACAAT
1 TTTAGTTTAATATAAAAATGTTTGCTATGTGCTCTTTGTTCTTGCTTACAACAAT
116479790 ATTAACTTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (58 bp):
TTTAGTTTAATATAAAAATGTTTGCTATGTGCTCTTTGTTCTTGCTTACAACAATTTC
Found at i:116484861 original size:46 final size:45
Alignment explanation
Indices: 116484794--116484968 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
116484784 TGTAACCCGC
* *
116484794 CCATAAGCGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * * *
116484840 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* * * * * *
116484886 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
116484933 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
116484969 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
45 3 0.03
46 63 0.62
47 32 0.32
48 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:116484960 original size:93 final size:93
Alignment explanation
Indices: 116484801--116484972 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
116484791 CGCCCATAAG
* * * * *
116484801 CGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
116484866 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
116484894 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
116484959 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
116484973 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:116484988 original size:46 final size:45
Alignment explanation
Indices: 116484802--116484988 Score: 107
Period size: 46 Copynumber: 4.0 Consensus size: 45
116484792 GCCCATAAGC
* ** * *
116484802 GAACTCGGACTCAACTTAACGAGCTCGGGCGTTC--GCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCAT-C-TA-GT
* * *
116484848 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCT-AGT
* * * * * *
116484895 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGCTC-G-GATGCTCAACCATCTAGT
116484941 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCAT-CTAGT
116484987 GA
1 GA
116484989 CATGTCAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 57 0.52
47 29 0.27
48 2 0.02
49 5 0.05
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCTAGT
Found at i:116494552 original size:93 final size:93
Alignment explanation
Indices: 116494440--116494611 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
116494430 CGCCCATAAG
* *
116494440 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
116494505 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
116494533 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
116494598 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
116494612 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:116494608 original size:46 final size:46
Alignment explanation
Indices: 116494433--116494608 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
116494423 TGTAACCCGC
* * *
116494433 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
116494479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
116494529 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
116494572 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
116494609 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:116502112 original size:93 final size:93
Alignment explanation
Indices: 116502000--116502171 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
116501990 CGCCCATAAG
* *
116502000 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
116502065 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
116502093 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
116502158 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
116502172 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:116502168 original size:46 final size:46
Alignment explanation
Indices: 116501993--116502168 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
116501983 TGTAACCCGC
* * *
116501993 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
116502039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
116502089 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
116502132 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
116502169 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:116504806 original size:27 final size:27
Alignment explanation
Indices: 116504790--116505040 Score: 294
Period size: 27 Copynumber: 9.3 Consensus size: 27
116504780 CGACTTGTAA
116504790 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
116504817 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
** *
116504844 AATTACTGTTTTACCCTTGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
116504871 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
116504898 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
116504925 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
116504952 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
* *
116504979 AATTATCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
116505006 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
116505033 AATTACCA
1 AATTACCA
116505041 AAATACCCTT
Statistics
Matches: 195, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.02
27 187 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:116504898 original size:81 final size:81
Alignment explanation
Indices: 116504790--116505040 Score: 346
Period size: 81 Copynumber: 3.1 Consensus size: 81
116504780 CGACTTGTAA
116504790 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
116504855 TACCCTTGATTTACAG
66 TACCCTTAATTTACAG
* * *
116504871 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* * *
116504934 TTTCCCCTCAGTTTACAG
64 TTTACCCTTAATTTACAG
* * * * *
116504952 AATTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
116505017 TA-CCTTCAATTTACAG
66 TACCCTT-AATTTACAG
116505033 AATTACCA
1 AATTACCA
116505041 AAATACCCTT
Statistics
Matches: 146, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.03
81 139 0.95
82 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTTAATTTACAG
Found at i:116505047 original size:27 final size:27
Alignment explanation
Indices: 116504990--116505128 Score: 86
Period size: 27 Copynumber: 5.1 Consensus size: 27
116504980 ATTATCGTTT
* ****
116504990 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCTTCAGTTTACAGAATTACCAAAA
*
116505017 TACCTTCAATTTACAGAATTACCAAAA
1 TACCTTCAGTTTACAGAATTACCAAAA
* * *
116505044 TACCCTT-AGTTTATAAAATCACCAAAA
1 TA-CCTTCAGTTTACAGAATTACCAAAA
* ** * *
116505071 TACC-CCTAGTTTGTAAAATTACTAAAA
1 TACCTTC-AGTTTACAGAATTACCAAAA
* *
116505098 TACCCTT-GGTTTACAAAATTACCAAAA
1 TA-CCTTCAGTTTACAGAATTACCAAAA
116505125 TACC
1 TACC
116505129 CCTGGTTTGT
Statistics
Matches: 88, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
26 4 0.05
27 78 0.89
28 6 0.07
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (27 bp):
TACCTTCAGTTTACAGAATTACCAAAA
Found at i:116505056 original size:54 final size:54
Alignment explanation
Indices: 116504790--116505039 Score: 383
Period size: 54 Copynumber: 4.6 Consensus size: 54
116504780 CGACTTGTAA
* *
116504790 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
116504844 AATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
116504898 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
116504952 AATTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
116505006 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
116505040 AAAATACCCT
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 176 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:116505129 original size:27 final size:27
Alignment explanation
Indices: 116505033--116505186 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
116505023 CAATTTACAG
*
116505033 AATTACCAAAATACCCTTAGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * * *
116505060 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
116505087 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
116505114 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
116505141 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
116505168 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
116505187 TAGGGTAGAA
Statistics
Matches: 107, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:116505186 original size:81 final size:81
Alignment explanation
Indices: 116505026--116505186 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
116505016 TTACCTTCAA
* * *
116505026 TTTACAGAATTACCAAAATACCCTTAGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTAGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
116505091 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * * *
116505107 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTAGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
*
116505172 ACCGAAATACCCTTG
66 ACCAAAATACCCTTG
116505187 TAGGGTAGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTAGTTTATAAAATCACCAAAATACCCCTAGTTTATAAAATT
ACCAAAATACCCTTGG
Found at i:116505200 original size:54 final size:54
Alignment explanation
Indices: 116505033--116505183 Score: 239
Period size: 54 Copynumber: 2.8 Consensus size: 54
116505023 CAATTTACAG
* *
116505033 AATTACCAAAATACCCTTAGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* * *
116505087 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
* *
116505141 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCC
116505184 TTGTAGGGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:116513754 original size:40 final size:40
Alignment explanation
Indices: 116513564--116513747 Score: 160
Period size: 40 Copynumber: 4.6 Consensus size: 40
116513554 GAATGATGTC
* * * *
116513564 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATA
* * * *
116513604 CGGACTAAGAT-CCGAAGGCAATCGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATA
*** * *
116513644 CAAACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATA
* *
116513684 CGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA-A
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATA
*
116513724 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
116513748 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.92
41 8 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATA
Found at i:116520609 original size:27 final size:28
Alignment explanation
Indices: 116520578--116520647 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
116520568 ATAATGAGTC
116520578 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
116520605 TGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
116520633 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
116520648 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:116526600 original size:14 final size:14
Alignment explanation
Indices: 116526581--116526607 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
116526571 TATCAAGACA
116526581 ATAATTAAGAACAC
1 ATAATTAAGAACAC
116526595 ATAATTAAGAACA
1 ATAATTAAGAACA
116526608 AGTCAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:116531775 original size:2 final size:2
Alignment explanation
Indices: 116531768--116531796 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
116531758 TCATGACATG
116531768 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
116531797 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:116533073 original size:34 final size:32
Alignment explanation
Indices: 116533027--116533115 Score: 90
Period size: 34 Copynumber: 2.7 Consensus size: 32
116533017 CATTGGGGCT
* *
116533027 AAGCCCTATTCAGATAACAGCAGGTACTGGGCCG
1 AAGCCCTTTTCAGATAACAGCA--AACTGGGCCG
* *
116533061 AAGCCCTTTTCAGA-ATACAGTAAACTGGGCCT
1 AAGCCCTTTTCAGATA-ACAGCAAACTGGGCCG
*
116533093 TAGCCCCTTTTCAGATAACAGCA
1 AAG-CCCTTTTCAGATAACAGCA
116533116 TGGCCCATAG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
32 10 0.22
33 17 0.37
34 19 0.41
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (32 bp):
AAGCCCTTTTCAGATAACAGCAAACTGGGCCG
Found at i:116533488 original size:27 final size:26
Alignment explanation
Indices: 116533432--116533488 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
116533422 CAACCTTAAC
* * *
116533432 CCTAGGGGTATATCGGTAATTTTGCT
1 CCTAGGGGTAAATCGGTAATTTTCCA
*
116533458 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCGGT-AATTTTCCA
116533485 CCTA
1 CCTA
116533489 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCGGTAATTTTCCA
Found at i:116534761 original size:5 final size:5
Alignment explanation
Indices: 116534751--116534782 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
116534741 GTAGATGATG
116534751 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
116534783 AAACTGAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:116536714 original size:28 final size:28
Alignment explanation
Indices: 116536645--116536745 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
116536635 GACAAGATTG
* * * *
116536645 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
116536675 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
116536703 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
116536732 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
116536746 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:116536739 original size:29 final size:28
Alignment explanation
Indices: 116536674--116536745 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
116536664 AAAATTGTAC
*
116536674 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
116536702 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
116536731 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
116536746 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Done.