Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 406 of 444
Found at i:118034627 original size:20 final size:20
Alignment explanation
Indices: 118034573--118034742 Score: 104
Period size: 20 Copynumber: 8.3 Consensus size: 20
118034563 TTTTTAATCT
118034573 TATT-TTTATATTATATTATA
1 TATTATTTATA-TATATTATA
*
118034593 TAATTATTTTATTATTTATTATTCA
1 T-ATTA-TTTA-TATATATTA-T-A
118034618 TATTATTTATATATATTATA
1 TATTATTTATATATATTATA
* *
118034638 TATTATTTTTACATA-TATA
1 TATTATTTATATATATTATA
*
118034657 CT-TTCATAT-TATATATTATA
1 -TATT-ATTTATATATATTATA
*
118034677 T-TTATTT-TATATTATTATG
1 TATTATTTATATA-TATTATA
*
118034696 TCATT-TTTTTATACTATTATA
1 T-ATTATTTATATA-TATTATA
* *
118034717 TATTTTTTTATCTATATTAT-
1 TA-TTATTTATATATATTATA
118034737 TATTAT
1 TATTAT
118034743 CAAAAGTTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 31
0.73 0.08 0.19
Matches are distributed among these distances:
18 7 0.06
19 24 0.20
20 29 0.24
21 25 0.20
22 14 0.11
23 14 0.11
24 7 0.06
25 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (20 bp):
TATTATTTATATATATTATA
Found at i:118034639 original size:45 final size:41
Alignment explanation
Indices: 118034574--118034740 Score: 132
Period size: 39 Copynumber: 4.0 Consensus size: 41
118034564 TTTTAATCTT
*
118034574 ATTTTTATATTATATTATATAATTATTTTATTATTTATTATTC
1 ATTTTTTTA-TATATTATAT-ATTATTTTATTATTTATTATTC
** *
118034617 ATATTATTTATATATATTATATATTA-TTT-TTACATA-TATAC
1 AT-TT-TTT-TATATATTATATATTATTTTATTATTTATTATTC
*
118034658 -TTTCATATTATATATTATAT-TTATTTTA-TA-TTATTATGTC
1 ATTT--TTTTATATATTATATATTATTTTATTATTTATTAT-TC
*
118034698 ATTTTTTTATACTATTATATATTTTTTTATCTATATTATTATT
1 ATTTTTTTATA-TATTATATATTATTTTAT-TAT-TTATTATT
118034741 ATCAAAAGTT
Statistics
Matches: 100, Mismatches: 9, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
38 5 0.05
39 28 0.28
40 13 0.13
41 14 0.14
42 5 0.05
43 7 0.07
44 7 0.07
45 19 0.19
46 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (41 bp):
ATTTTTTTATATATTATATATTATTTTATTATTTATTATTC
Found at i:118034694 original size:13 final size:13
Alignment explanation
Indices: 118034572--118034694 Score: 53
Period size: 13 Copynumber: 9.3 Consensus size: 13
118034562 GTTTTTAATC
118034572 TTATTTT-TA-TA
1 TTATTTTATATTA
* *
118034583 TTATATTATATAA
1 TTATTTTATATTA
118034596 TTATTTTATTATTTA
1 TTATTTTA-TA-TTA
*
118034611 TTA-TTCATATTA
1 TTATTTTATATTA
*
118034623 TTTATATATATTATATA
1 -TTAT-TTTA-TAT-TA
*
118034640 TTATTTT-TACATA
1 TTATTTTATA-TTA
*
118034653 TATACTTTCATATTA
1 T-TA-TTTTATATTA
*
118034668 -TATATTATA-T-
1 TTATTTTATATTA
118034678 TTATTTTATATTA
1 TTATTTTATATTA
118034691 TTAT
1 TTAT
118034695 GTCATTTTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 30
0.65 0.11 0.24
Matches are distributed among these distances:
11 15 0.18
12 11 0.13
13 24 0.29
14 7 0.09
15 14 0.17
16 9 0.11
17 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTTTATATTA
Found at i:118035058 original size:14 final size:14
Alignment explanation
Indices: 118035039--118035087 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
118035029 AAAAATTTTG
*
118035039 TTATTATATATTAT
1 TTATTAAATATTAT
118035053 TTATTAAATATTA-
1 TTATTAAATATTAT
118035066 TT-TTAAA-ATTA-
1 TTATTAAATATTAT
118035077 TTATTAAATAT
1 TTATTAAATAT
118035088 CATATTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATTAAATATTAT
Found at i:118035141 original size:7 final size:7
Alignment explanation
Indices: 118035129--118035177 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
118035119 TTACTTACTT
118035129 TATTTTA
1 TATTTTA
118035136 TATTTTA
1 TATTTTA
118035143 TATTTT-
1 TATTTTA
*
118035149 TATTCT-
1 TATTTTA
*
118035155 T-TTATA
1 TATTTTA
118035161 TATTTTA
1 TATTTTA
*
118035168 TATTGTA
1 TATTTTA
118035175 TAT
1 TAT
118035178 ATATCATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 3 0.08
6 7 0.19
7 26 0.72
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (7 bp):
TATTTTA
Found at i:118035166 original size:9 final size:9
Alignment explanation
Indices: 118035134--118035170 Score: 51
Period size: 8 Copynumber: 4.3 Consensus size: 9
118035124 TACTTTATTT
118035134 TATATTTTA
1 TATATTTTA
118035143 TAT-TTTTA
1 TATATTTTA
*
118035151 T-TCTTTTA
1 TATATTTTA
118035159 TATATTTTA
1 TATATTTTA
118035168 TAT
1 TAT
118035171 TGTATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
7 1 0.04
8 12 0.48
9 12 0.48
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (9 bp):
TATATTTTA
Found at i:118035176 original size:16 final size:16
Alignment explanation
Indices: 118035129--118035179 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
118035119 TTACTTACTT
118035129 TATTTTATATTTTATA
1 TATTTTATATTTTATA
*
118035145 T-TTTTATTCTTTTATA
1 TATTTTA-TATTTTATA
*
118035161 TATTTTATATTGTATA
1 TATTTTATATTTTATA
118035177 TAT
1 TAT
118035180 ATCATTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 5 0.17
16 20 0.67
17 5 0.17
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTTTATATTTTATA
Found at i:118047287 original size:205 final size:205
Alignment explanation
Indices: 118046905--118047869 Score: 1529
Period size: 205 Copynumber: 4.7 Consensus size: 205
118046895 GCAGATTTCG
* * * * * * *
118046905 CTGAAGCAAGATCTAAGATGGTTTGGCATTCTTGTGCTTACAAGGAACAAACCAAAGACATAGAT
1 CTGAAGC-AGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
118046970 GATTTGGCTTTTACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
118047035 AGAGCAAATCGAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTT
130 AGAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTC
118047100 AGATGTTTATA
195 AGATGTTTATA
* * *
118047111 CTGAAGCAGATCCAAGATGATTTAGCATCCTTGTGCTTCCAAGAAACGAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
118047176 ATTTGGCTTTCACGTGTTTACGTTGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
118047241 GAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
131 GAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
118047306 GATGTTTATA
196 GATGTTTATA
* * *
118047316 CTGAAGCAGATCCAAGATGATTTAACATCCTTGTGCTTACAATGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
118047381 ATTTGGCTTTCACGTGTTTATGATGAAGCAAATCTAATATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
118047446 GAGCAAATCGAAGTCTGGCATCTCCACTTCAACGGGGAGTAGATACATAGCAGATCTTACCTTTA
131 GAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
118047511 GATGTTTATA
196 GATGTTTATA
* * *
118047521 CTGAAGCAGATCCAAGATGATGTAGCATCCTTGTGCTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
118047586 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
118047651 GAACAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
131 GAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
* * *
118047716 AATAATTT-CA
196 GAT-GTTTATA
*
118047726 CTGAAGCAAGATCCAAGATGATTT-GACATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
1 CTGAAGC-AGATCCAAGATGATTTAG-CATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
* * *
118047790 TGATTTGGCTTTCATGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
118047855 GAGAACAAACCAAAG
129 GAGAGCAAATCAAAG
118047870 AAGCAGATTT
Statistics
Matches: 704, Mismatches: 52, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
205 568 0.81
206 136 0.19
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAGCAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGCAGATCTCACCTTCA
GATGTTTATA
Found at i:118048091 original size:4 final size:4
Alignment explanation
Indices: 118048082--118048106 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
118048072 GACCAAATGA
118048082 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
118048107 TTTATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:118049569 original size:32 final size:32
Alignment explanation
Indices: 118049533--118049652 Score: 86
Period size: 32 Copynumber: 3.6 Consensus size: 32
118049523 TTTTTTAATC
118049533 TTATTTTTATATTATATTATATAATTATTTTA
1 TTATTTTTATATTATATTATATAATTATTTTA
* *
118049565 TTATTTATTAT-TCATATTATTTATATATATTATATA
1 TTATTT-TTATATTATATTATATA-AT-TATT-T-TA
* *
118049601 TTATTTTTAAATATATACTT-TCAT-ATTA-TATA
1 TTATTTTTATAT-TATA-TTAT-ATAATTATTTTA
* *
118049633 TTATATTTATTTTATATTAT
1 TTATTTTTATATTATATTAT
118049653 TATGTCATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
30 2 0.03
31 5 0.07
32 27 0.39
33 6 0.09
34 5 0.07
35 6 0.09
36 11 0.16
37 4 0.06
38 3 0.04
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (32 bp):
TTATTTTTATATTATATTATATAATTATTTTA
Found at i:118049584 original size:9 final size:9
Alignment explanation
Indices: 118049539--118049606 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
118049529 AATCTTATTT
118049539 TTATATTATA
1 TTAT-TTATA
*
118049549 TTATATA-A
1 TTATTTATA
118049557 TTATTT-TA
1 TTATTTATA
118049565 TTA-TT-TA
1 TTATTTATA
*
118049572 TTATTCATA
1 TTATTTATA
118049581 TTATTTATA
1 TTATTTATA
118049590 TATATTATATA
1 T-TATT-TATA
118049601 TTATTT
1 TTATTT
118049607 TTAAATATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
7 7 0.14
8 11 0.22
9 14 0.29
10 12 0.24
11 5 0.10
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (9 bp):
TTATTTATA
Found at i:118049588 original size:20 final size:20
Alignment explanation
Indices: 118049534--118049702 Score: 111
Period size: 20 Copynumber: 8.3 Consensus size: 20
118049524 TTTTTAATCT
118049534 TATT-TTTATATTATATTATA
1 TATTATTTATA-TATATTATA
*
118049554 TAATTATTTTATTATTTATTATTCA
1 T-ATTA-TTTA-TATATATTA-T-A
118049579 TATTATTTATATATATTATA
1 TATTATTTATATATATTATA
* *
118049599 TATTATTTTTAAATA-TATA
1 TATTATTTATATATATTATA
*
118049618 CT-TTCATAT-TATATATTATA
1 -TATT-ATTTATATATATTATA
*
118049638 T-TTATTT-TATATTATTATG
1 TATTATTTATATA-TATTATA
*
118049657 TCATT-TTTTTATACTATTATA
1 T-ATTATTTATATA-TATTATA
* *
118049678 TATTTTTTATCTATATTAT-
1 TATTATTTATATATATTATA
118049697 TATTAT
1 TATTAT
118049703 CAAAAGTTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
18 7 0.06
19 26 0.21
20 35 0.29
21 23 0.19
22 8 0.07
23 14 0.11
24 7 0.06
25 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.63
Consensus pattern (20 bp):
TATTATTTATATATATTATA
Found at i:118049609 original size:45 final size:43
Alignment explanation
Indices: 118049534--118049655 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 43
118049524 TTTTTAATCT
* *
118049534 TATT-TTTATATTATATTATATAATTATTTTATTATTTATTATTCA
1 TATTATTTATA-TATATTATAT-ATTATTTTATTATATACT-TTCA
*
118049579 TATTATTTATATATATTATATATTATTTTTAAATATATACTTTCA
1 TATTATTTATATATATTATATATTA-TTTT-ATTATATACTTTCA
* * *
118049624 TATTATATAT-TATATT-TATTTTATATTATTAT
1 TATTATTTATATATATTATATATTATTTTATTAT
118049656 GTCATTTTTT
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 4 0.06
42 3 0.04
43 6 0.09
44 10 0.15
45 31 0.46
46 13 0.19
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (43 bp):
TATTATTTATATATATTATATATTATTTTATTATATACTTTCA
Found at i:118049655 original size:13 final size:13
Alignment explanation
Indices: 118049533--118049655 Score: 53
Period size: 13 Copynumber: 9.3 Consensus size: 13
118049523 TTTTTTAATC
118049533 TTATTTT-TA-TA
1 TTATTTTATATTA
* *
118049544 TTATATTATATAA
1 TTATTTTATATTA
118049557 TTATTTTATTATTTA
1 TTATTTTA-TA-TTA
*
118049572 TTA-TTCATATTA
1 TTATTTTATATTA
*
118049584 TTTATATATATTATATA
1 -TTAT-TTTA-TAT-TA
*
118049601 TTATTTT-TAAATA
1 TTATTTTAT-ATTA
*
118049614 TATACTTTCATATTA
1 T-TA-TTTTATATTA
*
118049629 -TATATTATA-T-
1 TTATTTTATATTA
118049639 TTATTTTATATTA
1 TTATTTTATATTA
118049652 TTAT
1 TTAT
118049656 GTCATTTTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 30
0.65 0.11 0.24
Matches are distributed among these distances:
11 15 0.18
12 11 0.13
13 23 0.28
14 8 0.10
15 15 0.18
16 8 0.10
17 2 0.02
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTTTATATTA
Found at i:118050023 original size:24 final size:24
Alignment explanation
Indices: 118049996--118050044 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
118049986 AAAAAATTTG
*
118049996 TTATTAT-ATATTATATATTAAATA
1 TTATTATAAAATTAT-TATTAAATA
*
118050020 TTATTTTAAAATTATTATTAAATA
1 TTATTATAAAATTATTATTAAATA
118050044 T
1 T
118050045 CATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTATAAAATTATTATTAAATA
Found at i:118050040 original size:12 final size:13
Alignment explanation
Indices: 118049996--118050044 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
118049986 AAAAAATTTG
*
118049996 TTATTATATATTA
1 TTATTAAATATTA
118050009 TATATTAAATATTA
1 T-TATTAAATATTA
118050023 TT-TTAAA-ATTA
1 TTATTAAATATTA
118050034 TTATTAAATAT
1 TTATTAAATAT
118050045 CATATTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTATTAAATATTA
Found at i:118050050 original size:12 final size:12
Alignment explanation
Indices: 118050009--118050050 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
118049999 TTATATATTA
118050009 TATATTAAATAT
1 TATATTAAATAT
*
118050021 TATTTTAAA-AT
1 TATATTAAATAT
118050032 TATTATTAAATAT
1 TA-TATTAAATAT
*
118050045 CATATT
1 TATATT
118050051 TTTTTATAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 4 0.16
12 18 0.72
13 3 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
TATATTAAATAT
Found at i:118054419 original size:21 final size:22
Alignment explanation
Indices: 118054355--118054420 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 22
118054345 TTCTTTAGTT
*
118054355 TATATATATATTAATATAATATAA
1 TATAT-TATATT-ATATAATAAAA
* *
118054379 TATATTATAATTAAAAAATAAAA
1 TATATTAT-ATTATATAATAAAA
*
118054402 TATCTT-TATTATATAATAA
1 TATATTATATTATATAATAA
118054421 TATAATAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 10 0.29
22 1 0.03
23 16 0.46
24 8 0.23
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TATATTATATTATATAATAAAA
Found at i:118054425 original size:8 final size:8
Alignment explanation
Indices: 118054412--118054440 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
118054402 TATCTTTATT
118054412 ATATAATA
1 ATATAATA
118054420 ATATAATA
1 ATATAATA
118054428 ATATAATA
1 ATATAATA
118054436 ATATA
1 ATATA
118054441 TTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:118054444 original size:52 final size:51
Alignment explanation
Indices: 118054353--118054457 Score: 126
Period size: 52 Copynumber: 2.0 Consensus size: 51
118054343 ATTTCTTTAG
* *
118054353 TTTATATATATATTAATATAATATAATATATTATAATTAAAAAATAAAATATC
1 TTTATATATATAATAATATAATATAATATAATATAATT-AAAAATAAAA-ATC
*
118054406 TTTAT-TATATAATAATAT-A-ATAATATAATAATATATTAAACATAAAAATC
1 TTTATATATATAATAATATAATATAATATAAT-ATA-ATTAAAAATAAAAATC
118054456 TT
1 TT
118054458 AGATTTTCCT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
50 14 0.30
51 13 0.28
52 15 0.32
53 5 0.11
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (51 bp):
TTTATATATATAATAATATAATATAATATAATATAATTAAAAATAAAAATC
Found at i:118061445 original size:12 final size:12
Alignment explanation
Indices: 118061428--118061465 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
118061418 TCTTTAGTTT
118061428 ATATATATAATA
1 ATATATATAATA
118061440 ATATATATAAT-
1 ATATATATAATA
*
118061451 ATAATATATTATA
1 AT-ATATATAATA
118061464 AT
1 AT
118061466 TAAAACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 2 0.09
12 19 0.83
13 2 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATATATAATA
Found at i:118061446 original size:14 final size:14
Alignment explanation
Indices: 118061427--118061465 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
118061417 TTCTTTAGTT
118061427 TATATATATAATAA
1 TATATATATAATAA
118061441 TATATATA-ATATAA
1 TATATATATA-ATAA
118061455 TATAT-TATAAT
1 TATATATATAAT
118061466 TAAAACATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATATATATAATAA
Found at i:118061452 original size:21 final size:20
Alignment explanation
Indices: 118061428--118061509 Score: 59
Period size: 19 Copynumber: 4.3 Consensus size: 20
118061418 TCTTTAGTTT
118061428 ATATATATAATAATATATATA
1 ATATATATAATAATATA-ATA
*
118061449 ATATA-AT-ATATTATAATTA
1 ATATATATAATAATATAA-TA
* ** *
118061468 A-A-ACATAA-AATATCTTT
1 ATATATATAATAATATAATA
118061485 AT-TATATAATAATATAATA
1 ATATATATAATAATATAATA
118061504 ATATAT
1 ATATAT
118061510 TAAACATAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 15
0.65 0.13 0.22
Matches are distributed among these distances:
17 3 0.07
18 13 0.29
19 19 0.42
20 5 0.11
21 5 0.11
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATATATATAATAATATAATA
Found at i:118061962 original size:12 final size:12
Alignment explanation
Indices: 118061940--118061970 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
118061930 TAGGTCTTAA
118061940 AAAATTCTTCATC
1 AAAA-TCTTCATC
118061953 AAAATCTTCATC
1 AAAATCTTCATC
118061965 AAAATC
1 AAAATC
118061971 AACTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATCTTCATC
Found at i:118065739 original size:18 final size:17
Alignment explanation
Indices: 118065712--118065745 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
118065702 AATTTGGGCC
118065712 GTGTGACCCACACGGGG
1 GTGTGACCCACACGGGG
118065729 GTGTGGACCCACACGGG
1 GTGT-GACCCACACGGG
118065746 TAGGGCACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.18, C:0.29, G:0.41, T:0.12
Consensus pattern (17 bp):
GTGTGACCCACACGGGG
Found at i:118066701 original size:13 final size:13
Alignment explanation
Indices: 118066683--118066708 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
118066673 CACTTGATAA
118066683 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
118066696 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
118066709 TACTCTCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GGTTTCCTAAAAG
Found at i:118068913 original size:13 final size:12
Alignment explanation
Indices: 118068882--118068917 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
118068872 AGAGGGAGCG
118068882 GGATTTTTTAGT
1 GGATTTTTTAGT
118068894 GGATTTTTTAGT
1 GGATTTTTTAGT
118068906 GGATTTTTTAGT
1 GGATTTTTTAGT
118068918 CTTGGTCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.58
Consensus pattern (12 bp):
GGATTTTTTAGT
Found at i:118074908 original size:13 final size:13
Alignment explanation
Indices: 118074890--118074915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
118074880 CACTTGATAA
118074890 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
118074903 GGTTTCCTAAAAG
1 GGTTTCCTAAAAG
118074916 TACTCTCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GGTTTCCTAAAAG
Found at i:118075544 original size:19 final size:20
Alignment explanation
Indices: 118075517--118075554 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
118075507 GATAATTTAC
*
118075517 CCATTGAACAC-TTGGAATA
1 CCATCGAACACATTGGAATA
118075536 CCATCGAACACATTGGAAT
1 CCATCGAACACATTGGAAT
118075555 CTCGCACCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.24
Consensus pattern (20 bp):
CCATCGAACACATTGGAATA
Found at i:118075947 original size:25 final size:25
Alignment explanation
Indices: 118075919--118075967 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
118075909 CCAGAGGACC
* *
118075919 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
118075944 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
118075968 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:118083947 original size:17 final size:19
Alignment explanation
Indices: 118083915--118083954 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
118083905 TTCTTTCTTT
*
118083915 ATTTCTTAATTTTTATTCC
1 ATTTCTTAATTTTTATTCA
118083934 ATTT-TTAA-TTTTATTCA
1 ATTTCTTAATTTTTATTCA
118083951 ATTT
1 ATTT
118083955 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
18 4 0.20
19 4 0.20
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTCTTAATTTTTATTCA
Found at i:118084017 original size:22 final size:21
Alignment explanation
Indices: 118083961--118084017 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
118083951 ATTTATTTAT
118083961 TTATTTTTTTATTAGTCTTCA
1 TTATTTTTTTATTAGTCTTCA
** *
118083982 TTATTATTACTATTATTCTTCA
1 TTATT-TTTTTATTAGTCTTCA
118084004 TTATATTTTTTATT
1 TTAT-TTTTTTATT
118084018 TATTATGATT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.17
22 23 0.79
23 1 0.03
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTTTTTATTAGTCTTCA
Found at i:118086395 original size:40 final size:40
Alignment explanation
Indices: 118086351--118086574 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
118086341 GCCACTAGCT
* * * *
118086351 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
118086391 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
118086430 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
118086470 CGAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* * * *
118086510 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCA-CTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-TAGCTCGCA
118086550 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
118086575 TTATCATCCG
Statistics
Matches: 166, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 38 0.23
40 127 0.77
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
Found at i:118094734 original size:40 final size:39
Alignment explanation
Indices: 118094690--118094914 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 39
118094680 GCCACTAGCT
*
118094690 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
118094730 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
118094769 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
118094809 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
118094849 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
118094889 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
118094915 TATCATCCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 39 0.24
40 126 0.76
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:118094893 original size:80 final size:78
Alignment explanation
Indices: 118094690--118094914 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 78
118094680 GCCACTAGCT
* *
118094690 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTAGCACAAATGCCTTCGGGACTTAGCCCGG
118094755 TATAATAACTCGCA
65 TATAATAACTCGCA
* * * *
118094769 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
118094834 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* * *
118094849 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-AACTAGCACAAATGCCT-TCGGGACTTAGCCC
118094912 GGT
63 GGT
118094915 TATCATCCGA
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 64 0.50
80 64 0.50
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:118097490 original size:7 final size:6
Alignment explanation
Indices: 118097474--118097535 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
118097464 TTTGAGCCCG
*** * * *
118097474 TTTA-T TTTATCT TTTATT TTTCGC TTTATT TTCATT TTCATT TTCATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
118097522 TTTATT TTTATT TT
1 TTTATT TTTATT TT
118097536 AGTTCTAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
5 4 0.09
6 37 0.79
7 6 0.13
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:118099367 original size:30 final size:30
Alignment explanation
Indices: 118099333--118099389 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
118099323 TAGGCATTTT
*
118099333 CACACGGGTAAACCACACGCCCGTGTGATA
1 CACACGAGTAAACCACACGCCCGTGTGATA
*
118099363 CACACGAGTAAGCCACACGCCCGTGTG
1 CACACGAGTAAACCACACGCCCGTGTG
118099390 TCATGGCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.35, G:0.25, T:0.12
Consensus pattern (30 bp):
CACACGAGTAAACCACACGCCCGTGTGATA
Found at i:118101198 original size:15 final size:16
Alignment explanation
Indices: 118101164--118101201 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
118101154 AATTTTTATT
*
118101164 TTTATTTGATTTTTGG
1 TTTATTTGATTTTTGA
118101180 TTTATTTGATTTTT-A
1 TTTATTTGATTTTTGA
118101195 TTTATTT
1 TTTATTT
118101202 TTCTTAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.74
Consensus pattern (16 bp):
TTTATTTGATTTTTGA
Found at i:118106620 original size:41 final size:43
Alignment explanation
Indices: 118106570--118106673 Score: 108
Period size: 41 Copynumber: 2.5 Consensus size: 43
118106560 ATGCTGTCAC
118106570 ATATCGATGCC-ACTATCCCAAACAGGGCCTTACACG-AATCAA
1 ATAT-GATGCCAACTATCCCAAACAGGGCCTTACACGTAATCAA
* * * * * *
118106612 ATATGATGCCGA-TGTCCCAGACATGGTCTTACACGTAATCAC
1 ATATGATGCCAACTATCCCAAACAGGGCCTTACACGTAATCAA
118106654 ATATTGATGCCAAC-ATCCCA
1 ATA-TGATGCCAACTATCCCA
118106674 GTCGTGGTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
41 25 0.49
42 13 0.25
43 13 0.25
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
ATATGATGCCAACTATCCCAAACAGGGCCTTACACGTAATCAA
Found at i:118106673 original size:43 final size:41
Alignment explanation
Indices: 118106566--118106687 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 41
118106556 TCACATGCTG
* * * *
118106566 TCACATATCGATGCCACTATCCCAAACAGGGCCTTACACGAA
1 TCACATATTGATGCCAC-ATCCCAGACATGGTCTTACACGAA
* **
118106608 TCAAATA-TGATGCCGATGTCCCAGACATGGTCTTACACGTAA
1 TCACATATTGATGCC-ACATCCCAGACATGGTCTTACACG-AA
* *
118106650 TCACATATTGATGCCAACATCCCAGTCGTGGTCTTACA
1 TCACATATTGATGCC-ACATCCCAGACATGGTCTTACA
118106688 TGAGAACACA
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
41 24 0.38
42 15 0.23
43 25 0.39
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (41 bp):
TCACATATTGATGCCACATCCCAGACATGGTCTTACACGAA
Found at i:118108442 original size:44 final size:42
Alignment explanation
Indices: 118108379--118108535 Score: 167
Period size: 44 Copynumber: 3.7 Consensus size: 42
118108369 TGTGTTATCG
118108379 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGAATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTT-TG-ATTACA
* * *
118108423 TGTAAGACCATGTCTGGGACGTTGGCATCGTAC-TTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTTGATTACA
* * * *
118108465 TGTATGACC-CTATCTAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGA-CTTTGATTACA
*
118108508 TGTAAGACGACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
118108536 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 30 0.33
44 31 0.34
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACTTTGATTACA
Found at i:118110671 original size:40 final size:40
Alignment explanation
Indices: 118110518--118110672 Score: 125
Period size: 42 Copynumber: 3.7 Consensus size: 40
118110508 TATGTGTTTT
**
118110518 CATGTAAGACCACTTTGGGATGTTGGCATCGACTTATGATTTA
1 CATGTAAGACCACTTTGGGACATTGGCATCGA--TATGA-TTA
* * * * * *
118110561 CGTGGAAGACGACGTCTGGGACATTGGCATCGTATTTGATTT
1 CATGTAAGACCAC-TTTGGGACATTGGCATCG-ATATGATTA
* *
118110603 CGTGTAAGACC-CTATCTGGGACAGTGGCATCGATAT-ATTA
1 CATGTAAGACCACT-T-TGGGACATTGGCATCGATATGATTA
*
118110643 CATGTAAGACCACGTTTGAGACATTGGCAT
1 CATGTAAGACCAC-TTTGGGACATTGGCAT
118110673 TGTATGAGTT
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
40 26 0.29
41 6 0.07
42 27 0.30
43 14 0.16
44 15 0.17
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (40 bp):
CATGTAAGACCACTTTGGGACATTGGCATCGATATGATTA
Found at i:118111224 original size:23 final size:23
Alignment explanation
Indices: 118111198--118111251 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
118111188 TTTAGCCATG
*
118111198 TGATATGGCTTGGTTATTGGT-TA
1 TGATATGGCTTGATT-TTGGTATA
118111221 TGATTATGGCTTGATTTTGGTATA
1 TGA-TATGGCTTGATTTTGGTATA
118111245 TGATATG
1 TGATATG
118111252 TGATGCAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.20, C:0.04, G:0.28, T:0.48
Consensus pattern (23 bp):
TGATATGGCTTGATTTTGGTATA
Found at i:118113342 original size:28 final size:28
Alignment explanation
Indices: 118113300--118113367 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
118113290 TTAAAACCCC
*
118113300 AGGGGT-ATTTTGGTAATTTTACTCTTT
1 AGGGGTAATTTCGGTAATTTTACTCTTT
*
118113327 AGGGGTAATTTCGGTAATTTTGCTCTTT
1 AGGGGTAATTTCGGTAATTTTACTCTTT
118113355 AGGGGTAATTTCG
1 AGGGGTAATTTCG
118113368 TGATCTACGC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.46
Consensus pattern (28 bp):
AGGGGTAATTTCGGTAATTTTACTCTTT
Found at i:118117290 original size:28 final size:28
Alignment explanation
Indices: 118117244--118117311 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
118117234 TTTAAAACCC
118117244 TAGGGGT-ATTT-GGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
118117270 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
118117298 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118117312 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 4 0.10
28 28 0.72
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:118121227 original size:28 final size:28
Alignment explanation
Indices: 118121183--118121248 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
118121173 TAAAACCCTA
*
118121183 GGGT-ATTTTGGTAATTTAACTCTTTAG
1 GGGTAATTTCGGTAATTTAACTCTTTAG
**
118121210 GGGTAATTTCGGTAATTTTGCTCTTTAG
1 GGGTAATTTCGGTAATTTAACTCTTTAG
118121238 GGGTAATTTCG
1 GGGTAATTTCG
118121249 TGATCTACGC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 4 0.11
28 31 0.89
ACGTcount: A:0.20, C:0.09, G:0.26, T:0.45
Consensus pattern (28 bp):
GGGTAATTTCGGTAATTTAACTCTTTAG
Found at i:118125068 original size:60 final size:60
Alignment explanation
Indices: 118125003--118125115 Score: 217
Period size: 60 Copynumber: 1.9 Consensus size: 60
118124993 CAAAATAAGC
118125003 TTTTTCAAGAAAAATAAATTATTAAATGTTATAATATTAACCATAAATATAAATAAACTA
1 TTTTTCAAGAAAAATAAATTATTAAATGTTATAATATTAACCATAAATATAAATAAACTA
*
118125063 TTTTTCAAGAAAAATAAATTATTAAATGTTATAATATTTACCATAAATATAAA
1 TTTTTCAAGAAAAATAAATTATTAAATGTTATAATATTAACCATAAATATAAA
118125116 ATATCGTTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (60 bp):
TTTTTCAAGAAAAATAAATTATTAAATGTTATAATATTAACCATAAATATAAATAAACTA
Found at i:118128215 original size:53 final size:54
Alignment explanation
Indices: 118128117--118128220 Score: 147
Period size: 53 Copynumber: 1.9 Consensus size: 54
118128107 TTGGCCGCTA
* * *
118128117 ATTTAAAATTCAAATACATTTTTCTAATCAAATTCAATTTAAAATTATTAAATT
1 ATTTAAAATTAAAATACATTTTTCAAATAAAATTCAATTTAAAATTATTAAATT
* * *
118128171 ATTTATAATTAAAATACCTTTTT-AAATAAAATTCGATTTAAAATTATTAA
1 ATTTAAAATTAAAATACATTTTTCAAATAAAATTCAATTTAAAATTATTAA
118128221 GTGTATAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 24 0.55
54 20 0.45
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (54 bp):
ATTTAAAATTAAAATACATTTTTCAAATAAAATTCAATTTAAAATTATTAAATT
Found at i:118131367 original size:37 final size:37
Alignment explanation
Indices: 118131303--118131376 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
118131293 TTACAAGCCA
118131303 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
118131340 AAATCATTATAAGCCA-ATGCAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
118131377 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:118140564 original size:137 final size:136
Alignment explanation
Indices: 118140318--118140603 Score: 500
Period size: 137 Copynumber: 2.1 Consensus size: 136
118140308 CATTGGGCCT
** *
118140318 AAGCCCATTCAGGCAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGCAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGAGCCTT
*
118140383 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
118140448 CATATGC
130 CATATGC
* * *
118140455 AAGCCCATTTGGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGAGCCTT
1 AAGCCCATTTGGGCAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGAGCCTT
118140520 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
118140585 ATATGC
131 ATATGC
118140591 AAGCCCATTTGGG
1 AAGCCCATTTGGG
118140604 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 22 0.15
137 120 0.85
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (136 bp):
AAGCCCATTTGGGCAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGAGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:118142402 original size:26 final size:26
Alignment explanation
Indices: 118142366--118142475 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
118142356 CATGAATTTC
*
118142366 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
118142392 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
118142418 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
118142444 TTATCATGGAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
118142470 TTATCA
1 TTATCA
118142476 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:118144634 original size:26 final size:26
Alignment explanation
Indices: 118144598--118144707 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
118144588 TGATACAAAT
118144598 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
118144624 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
118144650 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
118144676 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
118144702 TGATAA
1 TGATAA
118144708 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:118146186 original size:28 final size:26
Alignment explanation
Indices: 118146144--118146214 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
118146134 AAAAGTAGCT
* * *
118146144 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
118146172 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
118146198 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
118146215 GTAGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 19 0.50
27 1 0.03
28 18 0.47
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:118146363 original size:27 final size:27
Alignment explanation
Indices: 118146322--118146434 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
118146312 GAGGAAGCGT
*
118146322 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
118146349 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
118146376 TCTGGTGGCTCTGCCA-AGATTATCTGTA
1 TCTGGTGGCTCTGCCACA-AATATCTG-A
* * * *
118146404 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
118146430 TCTGG
1 TCTGG
118146435 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.73
28 14 0.19
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:118146427 original size:54 final size:54
Alignment explanation
Indices: 118146320--118146434 Score: 162
Period size: 54 Copynumber: 2.1 Consensus size: 54
118146310 TGGAGGAAGC
*
118146320 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * *
118146374 GTTCTGGTGGCTCTGCCA-AGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACA-AATATCTG-ATCTGGTGACTCTGCCACATATATCT
118146428 GTTCTGG
1 GTTCTGG
118146435 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 1 0.02
54 36 0.65
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:118146520 original size:19 final size:22
Alignment explanation
Indices: 118146496--118146535 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
118146486 CTCCCCACAC
118146496 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
118146515 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
118146536 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:118148892 original size:17 final size:17
Alignment explanation
Indices: 118148870--118148913 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 17
118148860 CACGAGCTGT
118148870 CACACGACCATGTGACA
1 CACACGACCATGTGACA
*
118148887 CACACG-GC-T-TGACA
1 CACACGACCATGTGACA
118148901 -ACACGACCATGTG
1 CACACGACCATGTG
118148914 TCTCTTGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 7
0.71 0.06 0.23
Matches are distributed among these distances:
13 5 0.23
14 6 0.27
15 2 0.09
16 3 0.14
17 6 0.27
ACGTcount: A:0.32, C:0.34, G:0.20, T:0.14
Consensus pattern (17 bp):
CACACGACCATGTGACA
Found at i:118155698 original size:134 final size:135
Alignment explanation
Indices: 118155457--118155726 Score: 479
Period size: 134 Copynumber: 2.0 Consensus size: 135
118155447 ATGAGTCCAT
* *
118155457 CCATCCAATCAGACCGGAAAATAGTGGTATGTCACTATTAAATATGTAGCTATGCTGCCAGACAG
1 CCATCCAATCACACCAGAAAATAGTGGTATGTCACTATTAAATATGTAGCTATGCTGCCAGACAG
118155522 ATAATTTGCAGTTAAACCGCCAAAATTATAGTGATACTGCCAAAAACACTTCCTCCATCATATCC
66 ATAATTTGCAGTTAAACCGCCAAAATTATAGTGATACTGCCAAAAACACTTCCTCCATCATATCC
118155587 AAACC
131 AAACC
* * *
118155592 CCATCCAATCACACCAGAAAGTGGTGGTATGTCACTATTAAA-ATGTAGCTATGCTTCCAGACAG
1 CCATCCAATCACACCAGAAAATAGTGGTATGTCACTATTAAATATGTAGCTATGCTGCCAGACAG
*
118155656 ATAATTTGCAGTTAAACCGCCAAAATTATAGTGATGCTGCCAAAAACACTTCCTCCATCATATCC
66 ATAATTTGCAGTTAAACCGCCAAAATTATAGTGATACTGCCAAAAACACTTCCTCCATCATATCC
118155721 AAACC
131 AAACC
118155726 C
1 C
118155727 ACCCCATATG
Statistics
Matches: 129, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
134 91 0.71
135 38 0.29
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (135 bp):
CCATCCAATCACACCAGAAAATAGTGGTATGTCACTATTAAATATGTAGCTATGCTGCCAGACAG
ATAATTTGCAGTTAAACCGCCAAAATTATAGTGATACTGCCAAAAACACTTCCTCCATCATATCC
AAACC
Found at i:118157446 original size:17 final size:17
Alignment explanation
Indices: 118157424--118157456 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
118157414 TTTGAATATA
118157424 TAACATA-TATTAGAAAT
1 TAACATAGTA-TAGAAAT
118157441 TAACATAGTATAGAAA
1 TAACATAGTATAGAAA
118157457 ACATAAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (17 bp):
TAACATAGTATAGAAAT
Found at i:118159184 original size:34 final size:34
Alignment explanation
Indices: 118159147--118159210 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
118159137 AGCCCATAAA
**
118159147 AAAAAAG-TATATTATTTTTTATAAATAAGTGAC
1 AAAAAAGTTATAACATTTTTTATAAATAAGTGAC
*
118159180 AAAAAAGTTATAACATTTTTTATGAATAAGT
1 AAAAAAGTTATAACATTTTTTATAAATAAGT
118159211 ATATTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 7 0.26
34 20 0.74
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (34 bp):
AAAAAAGTTATAACATTTTTTATAAATAAGTGAC
Found at i:118163146 original size:11 final size:9
Alignment explanation
Indices: 118163116--118163158 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
118163106 TTTTAAGTGT
118163116 TATATATATG
1 TATAT-TATG
118163126 TATA-TATG
1 TATATTATG
118163134 TATACTTTATG
1 TATA--TTATG
118163145 TATATTATG
1 TATATTATG
118163154 TATAT
1 TATAT
118163159 ATTTTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.27
9 10 0.33
10 4 0.13
11 8 0.27
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (9 bp):
TATATTATG
Found at i:118163200 original size:17 final size:16
Alignment explanation
Indices: 118163154--118163202 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
118163144 GTATATTATG
*
118163154 TATATATTTTTATAAA
1 TATATATTTTTATATA
* *
118163170 TAT-TATATGTATATA
1 TATATATTTTTATATA
118163185 TATATATTTTTA-ATA
1 TATATATTTTTATATA
118163200 TAT
1 TAT
118163203 TATGCATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATATTTTTATATA
Found at i:118163664 original size:18 final size:18
Alignment explanation
Indices: 118163643--118163684 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
118163633 ATATTCTTAC
118163643 TATTATCATTACTATAT-T
1 TATTATCATTACTAT-TGT
*
118163661 TATTATCATTATTATTGT
1 TATTATCATTACTATTGT
118163679 TATTAT
1 TATTAT
118163685 TTTTATCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTATCATTACTATTGT
Found at i:118176560 original size:205 final size:204
Alignment explanation
Indices: 118176148--118176630 Score: 691
Period size: 205 Copynumber: 2.4 Consensus size: 204
118176138 GATCTGGATA
* *
118176148 AAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCCGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCAGATT
* * **
118176213 TGGCTTTCATGTGCTTACGATGAAGCAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAAC
66 TGGCTTTCACGTGCTTACGATGAAACAATCTAAGATGATTTGTCGTCTCCATATTGTCAGAGAAC
* * ** *
118176278 GAATCAAAGTATGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTGCCTTCGGATG
131 AAATCAAAGTATGGCATCTCCACTTCAATGGAGAGCAGACACATAGCAGATCTTGCCTTCAGATG
*
118176343 TTTATGCTG
196 TTTATACTG
* * *
118176352 AAGCGGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCAGATT
* * *
118176417 TGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGTCTCCATATTTTCAGAGAA
66 TGGCTTTCACGTGCTTACGATGAAAC-AATCTAAGATGATTTGTCGTCTCCATATTGTCAGAGAA
* * * *
118176482 CAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGATACATAGTAGATC-TGACCTTCAGA
130 CAAATCAAAGTATGGCATCTCCACTTCAATGGAGAGCAGACACATAGCAGATCTTG-CCTTCAGA
118176546 TGTTTATACTG
194 TGTTTATACTG
* *
118176557 AAGCAAGATCCAAGA-GGATCTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCAGA
1 AAGC-AGATCCAAGATGG-TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCAGA
*
118176621 TTTGACTTTC
64 TTTGGCTTTC
118176631 GGATGTTCCC
Statistics
Matches: 248, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
204 85 0.34
205 103 0.42
206 60 0.24
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (204 bp):
AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCAGATT
TGGCTTTCACGTGCTTACGATGAAACAATCTAAGATGATTTGTCGTCTCCATATTGTCAGAGAAC
AAATCAAAGTATGGCATCTCCACTTCAATGGAGAGCAGACACATAGCAGATCTTGCCTTCAGATG
TTTATACTG
Found at i:118178492 original size:11 final size:9
Alignment explanation
Indices: 118178462--118178504 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
118178452 TTTTAAGTAT
118178462 TATATATATG
1 TATAT-TATG
118178472 TATA-TATG
1 TATATTATG
118178480 TATACTTTATG
1 TATA--TTATG
118178491 TATATTATG
1 TATATTATG
118178500 TATAT
1 TATAT
118178505 ATTTTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.27
9 10 0.33
10 4 0.13
11 8 0.27
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (9 bp):
TATATTATG
Found at i:118178546 original size:17 final size:16
Alignment explanation
Indices: 118178500--118178548 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
118178490 GTATATTATG
*
118178500 TATATATTTTTATAAA
1 TATATATTTTTATATA
* *
118178516 TAT-TATATGTATATA
1 TATATATTTTTATATA
118178531 TATATATTTTTA-ATA
1 TATATATTTTTATATA
118178546 TAT
1 TAT
118178549 TATGCATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATATTTTTATATA
Found at i:118181531 original size:47 final size:47
Alignment explanation
Indices: 118181480--118181575 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
118181470 AATAATTTAG
*
118181480 AAATCTTACATCAAAAATTAAGTACACATACTTGAGAACAAGAAACT
1 AAATCTTACATCAAAAATTAAGTACACATAATTGAGAACAAGAAACT
118181527 AAATCTTACATCAAAAATTAAGTACACATAATTGAGAACAAGAAACT
1 AAATCTTACATCAAAAATTAAGTACACATAATTGAGAACAAGAAACT
118181574 AA
1 AA
118181576 GTATTTATTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.23
Consensus pattern (47 bp):
AAATCTTACATCAAAAATTAAGTACACATAATTGAGAACAAGAAACT
Found at i:118184257 original size:26 final size:24
Alignment explanation
Indices: 118184213--118184262 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
118184203 ATTTGTATTA
*
118184213 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
118184237 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
118184263 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:118186559 original size:3 final size:3
Alignment explanation
Indices: 118186551--118186617 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
118186541 CCAACTTAGC
118186551 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
118186599 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
118186618 ATGATATAAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:118190188 original size:2 final size:2
Alignment explanation
Indices: 118190181--118190210 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
118190171 AAATAACGTG
118190181 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
118190211 AATCACCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:118191363 original size:26 final size:26
Alignment explanation
Indices: 118191334--118191443 Score: 141
Period size: 26 Copynumber: 4.2 Consensus size: 26
118191324 TGGTACAAAT
*
118191334 TGATAATATGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
* * * *
118191360 TGATAATAGATTAAGTAAATGCTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
118191386 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
118191412 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
118191438 TGATAA
1 TGATAA
118191444 GAATTTCATG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 72 0.97
27 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:118193091 original size:27 final size:26
Alignment explanation
Indices: 118193061--118193148 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
118193051 TGGAGGAAGC
* *
118193061 GTTCTGGTGGCTATACCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
118193088 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
118193115 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
118193142 GTTCTGG
1 GTTCTGG
118193149 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 5 0.09
27 33 0.60
28 17 0.31
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:118197207 original size:20 final size:20
Alignment explanation
Indices: 118197174--118197228 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
118197164 TTTATTATTT
118197174 ATTATTATTCTATTAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
118197196 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
118197216 ATTATTATTATTA
1 ATTATTATTATTA
118197229 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 22 0.73
21 3 0.10
22 5 0.17
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:118197213 original size:25 final size:26
Alignment explanation
Indices: 118197165--118197231 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
118197155 ATATAGATAT
* **
118197165 TTATTATTTATTATTATTCTATTAAA
1 TTATAATTTATTATTATTAAATTAAA
*
118197191 TTATAATTTA-TATTATTAAATTATGA
1 TTATAATTTATTATTATTAAATTA-AA
*
118197217 TTATTA-TTATTATTA
1 TTATAATTTATTATTA
118197232 AAAATAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 14 0.41
26 20 0.59
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (26 bp):
TTATAATTTATTATTATTAAATTAAA
Found at i:118197491 original size:3 final size:3
Alignment explanation
Indices: 118197478--118197529 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
118197468 AATAAGATAT
*
118197478 TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
118197526 TTA T
1 TTA T
118197530 AAAGTTAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:118197547 original size:14 final size:13
Alignment explanation
Indices: 118197528--118197576 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
118197518 TATTATTATT
118197528 ATAAAGTTAATAAA
1 ATAAAG-TAATAAA
118197542 ATAAAG-AATAAA
1 ATAAAGTAATAAA
* *
118197554 AGAAATGAAATAAA
1 ATAAA-GTAATAAA
118197568 ATAAAGTAA
1 ATAAAGTAA
118197577 AGAAGAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 10 0.33
13 4 0.13
14 16 0.53
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (13 bp):
ATAAAGTAATAAA
Found at i:118198684 original size:45 final size:45
Alignment explanation
Indices: 118198628--118198735 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
118198618 TGCCGACTAT
* *
118198628 TGTTACTGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAATAC
1 TGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAATAC
* * *
118198673 TGTTACCGTTACTATTACAGATTCAGCATTTTGTGTGTTGAATAC
1 TGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATAC
118198718 TGTTACTC-TTACTGTTAC
1 TGTTAC-CGTTACTGTTAC
118198736 TGCTACTGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
45 53 0.96
46 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.43
Consensus pattern (45 bp):
TGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATAC
Found at i:118201580 original size:13 final size:13
Alignment explanation
Indices: 118201562--118201586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118201552 ACTTTTAAAT
118201562 AATTAATTAATAG
1 AATTAATTAATAG
118201575 AATTAATTAATA
1 AATTAATTAATA
118201587 AAACTAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATTAATTAATAG
Found at i:118203009 original size:58 final size:58
Alignment explanation
Indices: 118202926--118203043 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
118202916 AATAGACAAA
118202926 TCATATTATATGAATACCATTTTTTATTATGCTAACTCTACTTTAACAAAATTTCTTG
1 TCATATTATATGAATACCATTTTTTATTATGCTAACTCTACTTTAACAAAATTTCTTG
118202984 TCATATTATATGAATACCATTTTTTATTATGCTAACTCTACTTTAACAAAATTTCTTG
1 TCATATTATATGAATACCATTTTTTATTATGCTAACTCTACTTTAACAAAATTTCTTG
118203042 TC
1 TC
118203044 CATGGAGTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (58 bp):
TCATATTATATGAATACCATTTTTTATTATGCTAACTCTACTTTAACAAAATTTCTTG
Found at i:118204553 original size:19 final size:21
Alignment explanation
Indices: 118204529--118204567 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
118204519 TGTTAATAAT
118204529 AATATTGTT-TT-ATTTTATC
1 AATATTGTTCTTAATTTTATC
*
118204548 AATATTTTTCTTAATTTTAT
1 AATATTGTTCTTAATTTTAT
118204568 AGTGATGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (21 bp):
AATATTGTTCTTAATTTTATC
Found at i:118207508 original size:22 final size:21
Alignment explanation
Indices: 118207474--118207514 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
118207464 CCAGTCCCAT
*
118207474 GCATCAGTTAATAACAACATG
1 GCATCAGTAAATAACAACATG
118207495 GCATGCAGTAAATAACAACA
1 GCAT-CAGTAAATAACAACA
118207515 GTCAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.20
Consensus pattern (21 bp):
GCATCAGTAAATAACAACATG
Found at i:118207572 original size:26 final size:26
Alignment explanation
Indices: 118207526--118207578 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
118207516 TCAAACATGC
*
118207526 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
118207552 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
118207578 A
1 A
118207579 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:118209103 original size:26 final size:25
Alignment explanation
Indices: 118209067--118209121 Score: 101
Period size: 26 Copynumber: 2.2 Consensus size: 25
118209057 TGAAATTCCA
118209067 ATCATGAACATTTACCTAACCCATT
1 ATCATGAACATTTACCTAACCCATT
118209092 ATCATGGAACATTTACCTAACCCATT
1 ATCAT-GAACATTTACCTAACCCATT
118209118 ATCA
1 ATCA
118209122 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.31
Consensus pattern (25 bp):
ATCATGAACATTTACCTAACCCATT
Found at i:118209132 original size:10 final size:10
Alignment explanation
Indices: 118209117--118209148 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
118209107 CCTAACCCAT
118209117 TATCAATTTG
1 TATCAATTTG
118209127 TATCAATTTG
1 TATCAATTTG
118209137 TATCAATTTG
1 TATCAATTTG
118209147 TA
1 TA
118209149 CCATAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.50
Consensus pattern (10 bp):
TATCAATTTG
Found at i:118209775 original size:5 final size:5
Alignment explanation
Indices: 118209765--118209794 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
118209755 AGTTATATTG
118209765 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
118209795 TATAAGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:118210349 original size:24 final size:24
Alignment explanation
Indices: 118210321--118210372 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
118210311 TTAGCAAGTC
*
118210321 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
* *
118210345 AAATATATTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
118210369 AAAT
1 AAAT
118210373 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATGCT
Found at i:118212310 original size:24 final size:24
Alignment explanation
Indices: 118212282--118212333 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
118212272 TTAGCAAGTC
* *
118212282 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
118212306 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
118212330 AAAT
1 AAAT
118212334 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:118216993 original size:43 final size:43
Alignment explanation
Indices: 118216945--118217095 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
118216935 TATCCTAGAT
* *
118216945 ATGGTCTTACATGTTATTACATATCGATGCCAATGTCCCAGGC
1 ATGGTCTTACATGTAATTACATATCGATGCCAATGTCCCAGAC
** * *
118216988 ATGGTCTTACA-CAAAAT-CATAAGACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATTACAT-A-TCGATGCCAATGTCCCAGAC
* * * *
118217031 ATGGTCTTACACGTAATCACA-ATACAATGTCAATGTCCCAGAC
1 ATGGTCTTACATGTAATTACATAT-CGATGCCAATGTCCCAGAC
*
118217074 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATTACAT
118217096 CTCGGTAATC
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 78 0.89
44 2 0.02
45 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATTACATATCGATGCCAATGTCCCAGAC
Found at i:118223348 original size:16 final size:18
Alignment explanation
Indices: 118223327--118223359 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
118223317 TAGTAAATGA
118223327 ATAATAA-A-ATGTTATT
1 ATAATAATATATGTTATT
118223343 ATAATAATATATGTTAT
1 ATAATAATATATGTTAT
118223360 ACTAAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (18 bp):
ATAATAATATATGTTATT
Found at i:118231759 original size:27 final size:26
Alignment explanation
Indices: 118231729--118231779 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
118231719 TTAGGATTTA
* *
118231729 AGCTAGACACGAAACAAAGAAAGAAAG
1 AGCTAGAAAAGAAAC-AAGAAAGAAAG
*
118231756 AGCTAGAAAAGAAGCAAGAAAGAA
1 AGCTAGAAAAGAAACAAGAAAGAA
118231780 GGAGAGCGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.43
27 12 0.57
ACGTcount: A:0.61, C:0.12, G:0.24, T:0.04
Consensus pattern (26 bp):
AGCTAGAAAAGAAACAAGAAAGAAAG
Found at i:118237183 original size:2 final size:2
Alignment explanation
Indices: 118237176--118237205 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
118237166 TTTTATTCGC
118237176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118237206 TGTAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118237912 original size:14 final size:15
Alignment explanation
Indices: 118237895--118237935 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
118237885 ATTATAATTA
*
118237895 TATTTTTATTACT-T
1 TATTATTATTACTAT
118237909 TATTATTATTACTAT
1 TATTATTATTACTAT
118237924 TATTATATATTA
1 TATTAT-TATTA
118237936 GTGTATATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 12 0.50
15 7 0.29
16 5 0.21
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTACTAT
Found at i:118238053 original size:3 final size:3
Alignment explanation
Indices: 118238045--118238086 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
118238035 TCCATTTCTA
118238045 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
118238087 ATAGTAGTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:118250661 original size:44 final size:44
Alignment explanation
Indices: 118250603--118250762 Score: 157
Period size: 44 Copynumber: 3.7 Consensus size: 44
118250593 AAATTACAGA
*
118250603 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGTCGAAGGG
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGTCGAAGGG
* * * * * *
118250647 TCTTAAACCCCTAAGCAGTAGGGTAACAGA-CCAAATTGCA-GA
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGTCGAAGGG
* * ** *
118250689 TCTT-ATCTCCCTAAGCAGTA-GTAGAGTAGATCGAAGACGAAGGG
1 TCTTAAAC-CCCTAAGCAGTAGGGA-AACAGATCGAAGTCGAAGGG
*
118250733 TCTTAAACCCCTAAGCAGTAGGGTAACAGA
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGA
118250763 CCAAATTGCA
Statistics
Matches: 87, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
41 3 0.03
42 21 0.24
43 11 0.13
44 49 0.56
45 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (44 bp):
TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGTCGAAGGG
Found at i:118250672 original size:86 final size:85
Alignment explanation
Indices: 118250569--118251024 Score: 429
Period size: 86 Copynumber: 5.2 Consensus size: 85
118250559 AGCCTTATCT
*
118250569 CCCTAAGCAATAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
*
118250634 CGAAGTCGAAGGGTCTTAAAC
66 CGAAGT-GAAGGGCCTTAAAC
* * * * **
118250655 CCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTA-GTAGAGTAGA
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGA-AACAGA
* *
118250719 TCGAAGACGAAGGGTCTTAAAC
65 TCGAAG-TGAAGGGCCTTAAAC
* * * *
118250741 CCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAATGG-AGCAGA
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGT-AGGGAAACAGA
** **
118250805 TCGAAGATTGACA-AACCTTACCC
65 TCGAAG--TGA-AGGGCCTTAAAC
* ****
118250828 CCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGACCAAATT-ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
* * *
118250893 TCAAAGGTGACA-AGCCCTAAAC
65 TCGAA-GTGA-AGGGCCTTAAAC
* * * *
118250915 CCCTAAACAGTAGGGTAACAGGCTGAACATTGAC-GAATCTTAACCCCCCAAGCAGTAGGGAAAC
1 CCCTAAGCAGTAGGGTAACAGAC-CAA-ATT-ACAG-ATCTTAACCCCCTAAGCAGTAGGGAAAC
* *
118250979 ATAGCAGAAGT-AATGGGCCTTAAAC
62 AGATC-GAAGTGAA-GGGCCTTAAAC
*
118251004 CCCTATGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGTAACAG
118251025 GCTGAAAATT
Statistics
Matches: 311, Mismatches: 44, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
85 2 0.01
86 137 0.44
87 69 0.22
88 36 0.12
89 65 0.21
90 2 0.01
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (85 bp):
CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
CGAAGTGAAGGGCCTTAAAC
Found at i:118250960 original size:44 final size:43
Alignment explanation
Indices: 118250733--118250979 Score: 146
Period size: 45 Copynumber: 5.7 Consensus size: 43
118250723 AGACGAAGGG
* * * **
118250733 TCTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATTG-CAGA
1 TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGACA-A
* * * *
118250775 TCTTATCCCCCTAAGCAGTAATGG-AGCA-GATCGAAGATTGACAAA
1 TCTTAACCCCCTAAACAGT-AGGGAAACAGGAT-GAA-ATTGAC-AA
* * * * *
118250820 CCTTACCCCCCTAAACAGTAGGGTAACAGGTTG-AATTCACAGA
1 TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGACA-A
* * *
118250863 TCTTAACCCCCTAAGCAGTAGGGAAACA-GATCAAAGGTGACAA
1 TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAA-TTGACAA
* * * * *
118250906 GCCCTAAACCCCTAAACAGTAGGGTAACAGGCTGAACATTGACGAA
1 -TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAA-ATTGAC-AA
* *
118250952 TCTTAACCCCCCAAGCAGTAGGGAAACA
1 TCTTAACCCCCTAAACAGTAGGGAAACA
118250980 TAGCAGAAGT
Statistics
Matches: 156, Mismatches: 35, Indels: 25
0.72 0.16 0.12
Matches are distributed among these distances:
42 25 0.16
43 38 0.24
44 35 0.22
45 52 0.33
46 6 0.04
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (43 bp):
TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGACAA
Found at i:118252722 original size:20 final size:20
Alignment explanation
Indices: 118252654--118252723 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 20
118252644 GTTAGATAAT
*
118252654 TTTATTATTTTCTTTTACTAC
1 TTTATTATATT-TTTTACTAC
*
118252675 TATT-TGT-TATATTTTACTA-
1 T-TTAT-TATATTTTTTACTAC
118252694 TTATAATTATATTTTTTACTAC
1 TT-T-ATTATATTTTTTACTAC
118252716 TTTATTAT
1 TTTATTAT
118252724 TATTACTATT
Statistics
Matches: 39, Mismatches: 3, Indels: 15
0.68 0.05 0.26
Matches are distributed among these distances:
18 1 0.03
19 2 0.05
20 14 0.36
21 17 0.44
22 5 0.13
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (20 bp):
TTTATTATATTTTTTACTAC
Found at i:118252764 original size:2 final size:2
Alignment explanation
Indices: 118252757--118252781 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118252747 GTATATCTTC
118252757 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
118252782 CCTACACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118252857 original size:3 final size:3
Alignment explanation
Indices: 118252849--118252929 Score: 162
Period size: 3 Copynumber: 27.0 Consensus size: 3
118252839 TGCATTTCTA
118252849 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
118252897 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
118252930 ATAGTAGTGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:118256405 original size:15 final size:15
Alignment explanation
Indices: 118256387--118256418 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
118256377 GGTATGAGTT
118256387 TTATTTAAATTACAA
1 TTATTTAAATTACAA
*
118256402 TTATTTAAATTATAA
1 TTATTTAAATTACAA
118256417 TT
1 TT
118256419 CTAGTGCGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATTTAAATTACAA
Found at i:118257740 original size:23 final size:23
Alignment explanation
Indices: 118257697--118257823 Score: 98
Period size: 23 Copynumber: 5.4 Consensus size: 23
118257687 ATTAGGTAGT
*
118257697 TCACAAAGAACCATATCGGGAAGC
1 TCACGAAGAACC-TATCGGGAAGC
118257721 TCACGAAGAACCTATCGGGAAGC
1 TCACGAAGAACCTATCGGGAAGC
* ** * *
118257744 TC-CGGATAGCCATATATCAGGAAGT
1 TCAC-GA-AG-AACCTATCGGGAAGC
* *
118257769 TCAAGCG-AGCA-CTATCGGAAAGC
1 TC-A-CGAAGAACCTATCGGGAAGC
*
118257792 TCACAAAGAACCTATCGGGAAGC
1 TCACGAAGAACCTATCGGGAAGC
118257815 TCACGAAGA
1 TCACGAAGA
118257824 GCCATATATC
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
21 1 0.01
22 5 0.06
23 44 0.54
24 15 0.19
25 14 0.17
27 1 0.01
28 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (23 bp):
TCACGAAGAACCTATCGGGAAGC
Found at i:118259997 original size:11 final size:11
Alignment explanation
Indices: 118259981--118260008 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
118259971 ACTAAATAAT
118259981 TAATAATAAAA
1 TAATAATAAAA
118259992 TAATAATAAAA
1 TAATAATAAAA
118260003 TAATAA
1 TAATAA
118260009 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:118260035 original size:20 final size:21
Alignment explanation
Indices: 118259982--118260057 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 21
118259972 CTAAATAATT
*
118259982 AATAATAAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
118260001 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
118260022 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
118260043 TAATCATAAAATATC
1 -AATAATAAAATATC
118260058 ATCAACATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 12 0.26
20 12 0.26
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:118261996 original size:23 final size:21
Alignment explanation
Indices: 118261970--118262022 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 21
118261960 ATATTGTTTA
118261970 TTTAAATTAAATCTTATCATGTT
1 TTTAAATTAAAT-TTAT-ATGTT
118261993 TTTAAAATTAAATTTATATGTT
1 TTT-AAATTAAATTTATATGTT
*
118262015 ATTAAATT
1 TTTAAATT
118262023 TTAATTTCGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 7 0.25
23 7 0.25
24 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTAAATTAAATTTATATGTT
Found at i:118262019 original size:22 final size:23
Alignment explanation
Indices: 118261967--118262029 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
118261957 AAAATATTGT
*
118261967 TTATTTAAATTAAATCTTATCATG
1 TTATTAAAATTAAAT-TTATCATG
*
118261991 TTTTTAAAATTAAATTTAT-ATG
1 TTATTAAAATTAAATTTATCATG
* *
118262013 TTATTAAATTTTAATTT
1 TTATTAAAATTAAATTT
118262030 CGTATTACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 17 0.50
23 4 0.12
24 13 0.38
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (23 bp):
TTATTAAAATTAAATTTATCATG
Found at i:118262128 original size:25 final size:28
Alignment explanation
Indices: 118262100--118262153 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
118262090 CTGCTAGTTA
118262100 TAATAA-CA-ATCACTC-TTTTATTTTG
1 TAATAATCACATCACTCTTTTTATTTTG
118262125 TAATAATTCACGATCACTCTTTTTATTTT
1 TAATAA-TCAC-ATCACTCTTTTTATTTT
118262154 ATAGCTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 6 0.25
27 2 0.08
29 7 0.29
30 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.04, T:0.50
Consensus pattern (28 bp):
TAATAATCACATCACTCTTTTTATTTTG
Found at i:118263361 original size:32 final size:33
Alignment explanation
Indices: 118263325--118263389 Score: 87
Period size: 36 Copynumber: 1.9 Consensus size: 33
118263315 TTGATTATAT
118263325 TTAAAAAATA-AATTAAAAATTAATTATAATAA
1 TTAAAAAATATAATTAAAAATTAATTATAATAA
*
118263357 TTAAAAAATATCTTATTTAAAAATTAATTATAA
1 TTAAAAAATA---TAATTAAAAATTAATTATAA
118263390 ATTAATCGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.36
36 18 0.64
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (33 bp):
TTAAAAAATATAATTAAAAATTAATTATAATAA
Found at i:118272099 original size:6 final size:6
Alignment explanation
Indices: 118272093--118272145 Score: 97
Period size: 6 Copynumber: 8.8 Consensus size: 6
118272083 CTCCTCGTCA
*
118272093 TCATCA TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
118272141 TCATC
1 TCATC
118272146 GTCCATGCCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.19, C:0.34, G:0.00, T:0.47
Consensus pattern (6 bp):
TCATCT
Found at i:118277554 original size:17 final size:17
Alignment explanation
Indices: 118277534--118277566 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
118277524 AATTTTAAAA
118277534 AAAAATCTTAAAAATTG
1 AAAAATCTTAAAAATTG
118277551 AAAAATCTTAAAAATT
1 AAAAATCTTAAAAATT
118277567 TGTTAAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAAATCTTAAAAATTG
Found at i:118278752 original size:27 final size:28
Alignment explanation
Indices: 118278721--118278797 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
118278711 TTTATTGACA
118278721 AATAATAATATATAAAATTTTAAAAAAT
1 AATAATAATATATAAAATTTTAAAAAAT
* * *
118278749 -ATAAAAATACATAAATATATTTTAAAAAT
1 AATAATAATATATAAA-AT-TTTAAAAAAT
*
118278778 AATAATAA-AT-TTAAATTTTA
1 AATAATAATATATAAAATTTTA
118278798 TATTAATGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
26 3 0.08
27 15 0.38
28 5 0.13
29 10 0.26
30 6 0.15
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (28 bp):
AATAATAATATATAAAATTTTAAAAAAT
Found at i:118278789 original size:19 final size:21
Alignment explanation
Indices: 118278750--118278789 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
118278740 TTAAAAAATA
*
118278750 TAAAAATACATAAATATATTT
1 TAAAAATACATAAATAAATTT
118278771 TAAAAATA-AT-AATAAATTT
1 TAAAAATACATAAATAAATTT
118278790 AAATTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 2 0.11
21 8 0.44
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAAATACATAAATAAATTT
Found at i:118279277 original size:17 final size:18
Alignment explanation
Indices: 118279236--118279278 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
118279226 TATATTTACT
118279236 TATTATATAAGTAAATAG
1 TATTATATAAGTAAATAG
*
118279254 TAATATA-AAGTAAAATA-
1 TATTATATAAGT-AAATAG
118279271 TATTATAT
1 TATTATAT
118279279 TATATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (18 bp):
TATTATATAAGTAAATAG
Found at i:118279328 original size:3 final size:3
Alignment explanation
Indices: 118279320--118279377 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
118279310 GAAATAAAAC
118279320 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
118279368 ATA ATA ATA A
1 ATA ATA ATA A
118279378 AGAAAGAAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:118279434 original size:16 final size:17
Alignment explanation
Indices: 118279406--118279449 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 17
118279396 CACGATTAGC
118279406 AGGGAAAGAAAGAAGGAAAA
1 AGGGAAAGAAA-AA-G-AAA
118279426 AGGGAAAGAAAAAGAAA
1 AGGGAAAGAAAAAGAAA
118279443 AGGGAAA
1 AGGGAAA
118279450 ATTTGGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.42
18 1 0.04
19 2 0.08
20 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAAAAAGAAA
Found at i:118281609 original size:21 final size:21
Alignment explanation
Indices: 118281580--118281626 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
118281570 ATTTTTAGGG
118281580 TTAA-TTTATTAAAAT-TATAA
1 TTAACTTTA-TAAAATATATAA
* *
118281600 TTAACTTTATATAATATGTAA
1 TTAACTTTATAAAATATATAA
118281621 TTAACT
1 TTAACT
118281627 AAATTTGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (21 bp):
TTAACTTTATAAAATATATAA
Found at i:118284144 original size:28 final size:28
Alignment explanation
Indices: 118284112--118284169 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
118284102 TTACAATTTT
118284112 AACATATAAAATAAGGACAAAATTGAAA
1 AACATATAAAATAAGGACAAAATTGAAA
118284140 AACATATAAAATAAGGACAAAATTGAAA
1 AACATATAAAATAAGGACAAAATTGAAA
118284168 AA
1 AA
118284170 TCTAGAGATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.66, C:0.07, G:0.10, T:0.17
Consensus pattern (28 bp):
AACATATAAAATAAGGACAAAATTGAAA
Found at i:118285043 original size:35 final size:37
Alignment explanation
Indices: 118285004--118285093 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 37
118284994 GGAAAAGTGT
* *
118285004 GAAACGTAGGTATGG-TATC-ATCTATACTGAGTTGA
1 GAAACGTAGGTATGGTTATCAATCCATACTGAGTTAA
118285039 GAAACGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAACGTAGGTATGG--TTATC-AATCCATACTGAGTTAA
118285079 GAAACGTAGGTATGG
1 GAAACGTAGGTATGG
118285094 CATTTCCAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
35 15 0.31
38 4 0.08
40 29 0.60
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (37 bp):
GAAACGTAGGTATGGTTATCAATCCATACTGAGTTAA
Found at i:118285111 original size:35 final size:35
Alignment explanation
Indices: 118285004--118285134 Score: 113
Period size: 35 Copynumber: 3.6 Consensus size: 35
118284994 GGAAAAGTGT
* * *
118285004 GAAACGTAGGTATGGTATCAT-CTATACTGAGTTGA
1 GAAACGTAGGTATGGTAT-TTCCAATACTGAGTTAA
*
118285039 GAAACGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAACGTAGGTATGGTATT-TC----CAATACTGAGTTAA
* * *
118285079 GAAACGTAGGTATGGCATTTCCAATACCGAGTTGTA
1 GAAACGTAGGTATGGTATTTCCAATACTGAGTT-AA
*
118285115 -AAATGTAGGTATGGTATTTC
1 GAAACGTAGGTATGGTATTTC
118285135 AATGAGGAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 14
0.78 0.09 0.14
Matches are distributed among these distances:
35 47 0.59
36 1 0.01
39 2 0.03
40 30 0.38
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (35 bp):
GAAACGTAGGTATGGTATTTCCAATACTGAGTTAA
Found at i:118286766 original size:40 final size:40
Alignment explanation
Indices: 118286711--118286927 Score: 258
Period size: 40 Copynumber: 5.4 Consensus size: 40
118286701 ACTCGATATC
* * * *
118286711 TCGCACACTAAGTGCCGTACATAGTTGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGTTGAAGCTATGTCGAA
*
118286751 TCGCACACTAAGTGCCATATATA-TCTGAAACTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGT-TGAAGCTATGTCGAA
* * ** *
118286791 TCACACACTAAGTGTCATATATAGCCGAAGCTATGTCGTA
1 TCGCACACTAAGTGCCATATATAGTTGAAGCTATGTCGAA
*
118286831 TCGCACACTAAGTGCCATATATA-TCTGAAACTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGT-TGAAGCTATGTCGAA
* * ** *
118286871 TCACACACTAAGTGTCATATATAGCCGAAGCTATGTCGTA
1 TCGCACACTAAGTGCCATATATAGTTGAAGCTATGTCGAA
118286911 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
118286928 CAAATAACTG
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 147 0.99
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGTTGAAGCTATGTCGAA
Found at i:118286950 original size:80 final size:80
Alignment explanation
Indices: 118286714--118286927 Score: 356
Period size: 80 Copynumber: 2.7 Consensus size: 80
118286704 CGATATCTCG
* * * ** * **
118286714 CACACTAAGTGCCGTACATAGTTGAAGCTATCTCAAATCGCACACTAAGTGCCATATATATCTGA
1 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCATATATATCTGA
118286779 AACTATGTCGAATCA
66 AACTATGTCGAATCA
118286794 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCATATATATCTGA
1 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCATATATATCTGA
118286859 AACTATGTCGAATCA
66 AACTATGTCGAATCA
118286874 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCA
1 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCA
118286928 CAAATAACTG
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 126 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (80 bp):
CACACTAAGTGTCATATATAGCCGAAGCTATGTCGTATCGCACACTAAGTGCCATATATATCTGA
AACTATGTCGAATCA
Done.