Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 409 of 444
Found at i:118883079 original size:15 final size:14
Alignment explanation
Indices: 118883046--118883112 Score: 107
Period size: 14 Copynumber: 4.7 Consensus size: 14
118883036 CCAGAAAAGT
118883046 AAATCATTTTCCAG
1 AAATCATTTTCCAG
118883060 AAATCATTTTCCAGG
1 AAATCATTTTCCA-G
118883075 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
118883089 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
118883103 AAAACATTTT
1 AAATCATTTT
118883113 ACCTGCAAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
14 36 0.72
15 14 0.28
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:118883079 original size:29 final size:28
Alignment explanation
Indices: 118883046--118883112 Score: 116
Period size: 29 Copynumber: 2.4 Consensus size: 28
118883036 CCAGAAAAGT
118883046 AAATCATTTTCCAGAAATCATTTTCCAGG
1 AAATCATTTTCCAGAAATCATTTTCC-GG
118883075 AAATCATTTTCCAGAAATCATTTTCCGG
1 AAATCATTTTCCAGAAATCATTTTCCGG
*
118883103 AAAACATTTT
1 AAATCATTTT
118883113 ACCTGCAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 11 0.30
29 26 0.70
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (28 bp):
AAATCATTTTCCAGAAATCATTTTCCGG
Found at i:118884283 original size:43 final size:43
Alignment explanation
Indices: 118884169--118884276 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
118884159 GATTAACGAG
* * * * **
118884169 ATGTGGTTATTTGTAAAACCATTTCTGGGACATTGGTATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGACATCATT
* *
118884212 ATGTGATTATGTGTAAGACTATGTCTGGGACATTGACATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGACATCATT
*
118884255 ATTTGATT-TCGTGTAAGACCAT
1 ATGTGATTAT-GTGTAAGACCAT
118884277 AGCTGGGCTA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGGGACATTGACATCATT
Found at i:118892980 original size:21 final size:21
Alignment explanation
Indices: 118892956--118892998 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
118892946 AATTTTAGTG
* **
118892956 ATTTTTAAATTTTTAAATTTT
1 ATTTTAAAATTTAAAAATTTT
118892977 ATTTTAAAATTTAAAAATTTT
1 ATTTTAAAATTTAAAAATTTT
118892998 A
1 A
118892999 AAAAATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTTAAAATTTAAAAATTTT
Found at i:118895245 original size:27 final size:28
Alignment explanation
Indices: 118895204--118895270 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
118895194 GTGCAACTCT
* *
118895204 TTTTTTTATATTAAAATA-TATTTTTT-
1 TTTTTTTAAAATAAAATATTATTTTTTA
118895230 TGTTTTTTAAAATAAAATATTATTTTTTA
1 T-TTTTTTAAAATAAAATATTATTTTTTA
118895259 TTTTTATTAAAA
1 TTTTT-TTAAAA
118895271 ATATTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 1 0.03
27 15 0.43
28 12 0.34
29 7 0.20
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (28 bp):
TTTTTTTAAAATAAAATATTATTTTTTA
Found at i:118895271 original size:25 final size:23
Alignment explanation
Indices: 118895203--118895276 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 23
118895193 AGTGCAACTC
*
118895203 TTTTTTTTATATTAAAATATATTT
1 TTTTTTTTTTATTAAAA-ATATTT
**
118895227 TTTTGTTTTTTAAAATAAAATATTAT
1 TTTT-TTTTTTATTA-AAAATATT-T
118895253 TTTTTATTTTTATTAAAAATATTT
1 TTTTT-TTTTTATTAAAAATATTT
118895277 AAATTTATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
24 5 0.12
25 21 0.51
26 15 0.37
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (23 bp):
TTTTTTTTTTATTAAAAATATTT
Found at i:118895889 original size:21 final size:21
Alignment explanation
Indices: 118895852--118895891 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
118895842 TGACAAATGC
*
118895852 TTTTATTAAAATTATTTAAAA
1 TTTTATTAAAATAATTTAAAA
118895873 TTTTAATTAAAA-AATTTAA
1 TTTT-ATTAAAATAATTTAA
118895892 CACCCACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTATTAAAATAATTTAAAA
Found at i:118896012 original size:13 final size:15
Alignment explanation
Indices: 118896001--118896030 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
118895991 TGTATTTTTT
118896001 TAATGTAATTTTTATA
1 TAATGTAA-TTTTATA
118896017 TAATGTAATTTTAT
1 TAATGTAATTTTAT
118896031 TTTATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TAATGTAATTTTATA
Found at i:118896191 original size:27 final size:27
Alignment explanation
Indices: 118896120--118896192 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
118896110 CCATTTGCGT
** * *
118896120 CTCTGAGATATAGACAATTAGTTGCGC
1 CTCTGAGATAGGGACAACTAGTCGCGC
* ** *
118896147 CTCTGAGAAAGGCTCAACTAGTCGCGG
1 CTCTGAGATAGGGACAACTAGTCGCGC
*
118896174 CTCTGAGATAGGGGCAACT
1 CTCTGAGATAGGGACAACT
118896193 TGTATTCGTA
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (27 bp):
CTCTGAGATAGGGACAACTAGTCGCGC
Found at i:118896264 original size:27 final size:27
Alignment explanation
Indices: 118896228--118896285 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
118896218 TACTGATCCG
*
118896228 AAAATAAAAAAATAATATTTT-ATTTAA
1 AAAATAAAAAAATAA-ATTTTAATATAA
118896255 AAAATAAAAAAATAAATTTTAATATAA
1 AAAATAAAAAAATAAATTTTAATATAA
118896282 AAAA
1 AAAA
118896286 AGAGTCTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (27 bp):
AAAATAAAAAAATAAATTTTAATATAA
Found at i:118897667 original size:16 final size:16
Alignment explanation
Indices: 118897646--118897678 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
118897636 TTTGGTTCGC
118897646 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGT
*
118897662 TGTAATGTAATAGAGT
1 TGTAATGGAATAGAGT
118897678 T
1 T
118897679 ATAGTCAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:118897892 original size:14 final size:13
Alignment explanation
Indices: 118897873--118897902 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
118897863 GAATTATTAT
118897873 TAAAAATAATTAAA
1 TAAAAATAA-TAAA
118897887 TAAAAATAATAAA
1 TAAAAATAATAAA
118897900 TAA
1 TAA
118897903 TTTAATCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAAAATAATAAA
Found at i:118897927 original size:10 final size:10
Alignment explanation
Indices: 118897899--118897967 Score: 59
Period size: 11 Copynumber: 6.6 Consensus size: 10
118897889 AAAATAATAA
118897899 ATAATTTAAT
1 ATAATTTAAT
*
118897909 CATATTTTAAT
1 -ATAATTTAAT
118897920 ATAATTTAAT
1 ATAATTTAAT
* *
118897930 A-AAATAATAT
1 ATAATTTA-AT
118897940 ATAATTTAAT
1 ATAATTTAAT
*
118897950 AATATTTTTAAT
1 -ATA-ATTTAAT
118897962 ATAATT
1 ATAATT
118897968 ATTTTTATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
9 4 0.09
10 17 0.37
11 19 0.41
12 6 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:118897944 original size:41 final size:43
Alignment explanation
Indices: 118897878--118897968 Score: 141
Period size: 41 Copynumber: 2.2 Consensus size: 43
118897868 ATTATTAAAA
*
118897878 ATAATTAAATAAAAATAATAAATAATTTAATCATA-TTTTAAT
1 ATAATTAAATAAAAATAATAAATAATTTAATAATATTTTTAAT
* *
118897920 ATAATTTAAT-AAAATAATATATAATTTAATAATATTTTTAAT
1 ATAATTAAATAAAAATAATAAATAATTTAATAATATTTTTAAT
118897962 ATAATTA
1 ATAATTA
118897969 TTTTTATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 22 0.50
42 22 0.50
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (43 bp):
ATAATTAAATAAAAATAATAAATAATTTAATAATATTTTTAAT
Found at i:118898000 original size:25 final size:25
Alignment explanation
Indices: 118897970--118898022 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
118897960 ATATAATTAT
* *
118897970 TTTTATATTAAATTATGTTAAAATA
1 TTTTATATTAAATTATATTAAAACA
* *
118897995 TTTTATTTTAAATTGTATTAAAACA
1 TTTTATATTAAATTATATTAAAACA
118898020 TTT
1 TTT
118898023 CAAATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTTATATTAAATTATATTAAAACA
Found at i:118902012 original size:11 final size:11
Alignment explanation
Indices: 118901998--118902042 Score: 72
Period size: 11 Copynumber: 3.9 Consensus size: 11
118901988 AGATAAATAT
118901998 TATTTTATTAA
1 TATTTTATTAA
118902009 TATTTTATTAATA
1 TATTTTATT-A-A
118902022 TATTTTATTAA
1 TATTTTATTAA
118902033 TATTTTATTA
1 TATTTTATTA
118902043 GTATATAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.62
12 2 0.06
13 10 0.31
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:118902025 original size:24 final size:24
Alignment explanation
Indices: 118901993--118902048 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
118901983 TAATTAGATA
118901993 AATATTATTTTATTAATATTTTATT
1 AATA-TATTTTATTAATATTTTATT
118902018 AATATATTTTATTAATATTTTATT
1 AATATATTTTATTAATATTTTATT
*
118902042 AGTATAT
1 AATATAT
118902049 AAAGAAAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 26 0.87
25 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTATT
Found at i:118902026 original size:13 final size:13
Alignment explanation
Indices: 118901993--118902048 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 13
118901983 TAATTAGATA
118901993 AATATTATTTTATT
1 AATA-TATTTTATT
118902007 -A-ATATTTTATT
1 AATATATTTTATT
118902018 AATATATTTTATT
1 AATATATTTTATT
118902031 -A-ATATTTTATT
1 AATATATTTTATT
*
118902042 AGTATAT
1 AATATAT
118902049 AAAGAAAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
11 19 0.51
12 3 0.08
13 15 0.41
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
AATATATTTTATT
Found at i:118904301 original size:45 final size:45
Alignment explanation
Indices: 118904191--118904307 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 45
118904181 ATGAAATGTG
* *
118904191 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACA-GAAAAGAA
118904237 TAAGACCATGGTTGAAAGATACTATGGCAACATGACA-AAGATA-AA
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACAGAA-A-AGAA
* * *
118904282 TAAGACCGTGGATGGAAGATACTATG
1 TAAGACCATGGTTGAAAGATACTATG
118904308 ACATCTATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 2 0.03
45 26 0.41
46 36 0.56
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.20
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGATACTATGGCAACATGACAGAAAAGAA
Found at i:118907976 original size:16 final size:18
Alignment explanation
Indices: 118907950--118907986 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
118907940 TCATGTTTGG
118907950 ATTTTTAATTT-AAATTT
1 ATTTTTAATTTAAAATTT
118907967 ATTTTT-ATTTAAAATTT
1 ATTTTTAATTTAAAATTT
118907984 ATT
1 ATT
118907987 ATGTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTTAATTTAAAATTT
Found at i:118928939 original size:36 final size:36
Alignment explanation
Indices: 118928890--118928958 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
118928880 AAAAGCTAGC
** *
118928890 CCGTGTGGTCCACACGGTCTACATGATTTCACACGG
1 CCGTGTGCCCCACACGATCTACATGATTTCACACGG
* * *
118928926 CCGTGTGCCCCACATGATCTGCATGGTTTCACA
1 CCGTGTGCCCCACACGATCTACATGATTTCACA
118928959 TGATCTTGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (36 bp):
CCGTGTGCCCCACACGATCTACATGATTTCACACGG
Found at i:118933595 original size:249 final size:245
Alignment explanation
Indices: 118932958--118933855 Score: 832
Period size: 242 Copynumber: 3.7 Consensus size: 245
118932948 TAATACATAT
* * *
118932958 ATAAATAATATTACATGATGTTATAATGTTTAATCATCAATGCATATATATATAAACTATTAATA
1 ATAAATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATATATAAA-TATT-ATA
* * * * * *
118933023 TATTATATGATATGATGTAACATTATATAATATAGTAGGAGGGCTAAGTTTTAAATGTACAAAAA
64 TACTATATGATATGATATAACATTATATAATATAGTAAGAGAGCTAACTTTCAAATGTACAAAAA
* ** * *
118933088 GTATAGGGACTTAGAGTATATTTTAACTAGTATAATAATATATAAACAATAATATATAATAA-TA
129 GTATAGAGACTTAGAACATATTTAAACCAG--T-ATAATA-ATAAACAATAATATATAATAATTA
* *
118933152 AGTA-ATATATAATGTACTACTATTATGTATAACTCTTATTATAATATAGATTATAAT---
190 A-TATATA-AT-ATGTACTACTATTA--TATAACTATTATTATATTATAGATTATAATAAA
* * * * *
118933209 AT--ATAGTATTACATGACATTACAATGTTTAATCATTTATGCACATATATA-AACTA-T-TA-A
1 ATAAATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATATATAAATATTATATA
* * * * * *
118933268 -TATATGATATGGTATAACATTATATAGTATAGT-AGGGTGACTAACTTTCTAATATACAAAAAG
66 CTATATGATATGATATAACATTATATAATATAGTAAGAGAG-CTAACTTTCAAATGTACAAAAAG
* * *
118933331 TATA-AGGATTTAGAACATATTTAAACCCGTATAATAACAAACAATAATATATAATAATTAATAT
130 TATAGA-GACTTAGAACATATTTAAACCAGTATAATAATAAACAATAATATATAATAATTAATAT
*
118933395 ATAATATGTACTACTATTAT-TAACTATTATTATATTATAAATTATAATAAA
194 ATAATATGTACTACTATTATATAACTATTATTATATTATAGATTATAATAAA
*
118933446 ATAAATAGTATTAAATGATATTATAATGTTTAATCATTAATGCATATATAAAGTATTAATATATT
1 ATAAATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATAT--A-TA-TAA-ATATT
* * * *
118933511 ATATACTATATGATATGATATAATATTATATAATAAAATAAGAGAGCTAACTTTCAAATGTATGA
61 ATATACTATATGATATGATATAACATTATATAATATAGTAAGAGAGCTAACTTTCAAATGTA-CA
*
118933576 AAAA-TATAGAGACTTAGAACATATTTCAACCAGTATAATAATAAAC------A-ATAATAATTA
125 AAAAGTATAGAGACTTAGAACATATTTAAACCAGTATAATAATAAACAATAATATATAATAATTA
* * *
118933633 ATATAT-A-ATGTACTAATATTATATATAACTATTATTATATTATGGATTACAATAAA
190 ATATATAATATGTACTACTA-T-TATATAACTATTATTATATTATAGATTATAATAAA
* * *
118933689 AGATATAGTATTACATGATATTATAATGTTTAATCATTGATGCATATATATAAACTGTTAATATA
1 ATAAATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATAT--A----TAA-ATA
* * *
118933754 TTATATACTATATGATATGATAT---GTTATA-ACATTATAGT-AGAAGGGCTAACTTTCAAATT
59 TTATATACTATATGATATGATATAACATTATATA-A-TATAGTAAG-AGAGCTAACTTTCAAATG
* * * * * *
118933814 TAC-GAAAGTATAGAGGCTTCGAGCATATTTCAACTAGTATAA
121 TACAAAAAGTATAGAGACTTAGAACATATTTAAACCAGTATAA
118933856 AAAATGAACG
Statistics
Matches: 545, Mismatches: 68, Indels: 77
0.79 0.10 0.11
Matches are distributed among these distances:
234 25 0.05
235 1 0.00
237 16 0.03
238 24 0.04
239 52 0.10
240 12 0.02
241 11 0.02
242 130 0.24
243 97 0.18
244 4 0.01
245 33 0.06
246 2 0.00
247 4 0.01
248 3 0.01
249 119 0.22
250 10 0.02
251 2 0.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (245 bp):
ATAAATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATATATAAATATTATATA
CTATATGATATGATATAACATTATATAATATAGTAAGAGAGCTAACTTTCAAATGTACAAAAAGT
ATAGAGACTTAGAACATATTTAAACCAGTATAATAATAAACAATAATATATAATAATTAATATAT
AATATGTACTACTATTATATAACTATTATTATATTATAGATTATAATAAA
Found at i:118933734 original size:243 final size:238
Alignment explanation
Indices: 118933135--118933855 Score: 686
Period size: 249 Copynumber: 3.0 Consensus size: 238
118933125 ATATATAAAC
* * * * * * *
118933135 AATAATATATAATAATAAGTAATATATAATGTACTACTATTATGTATAACTCTTATTATAATATA
1 AATAATAAACAATAATAATTAATATATAATGTACTAATATTATATATAACTATTATTATATTATA
* * * *
118933200 GATT--AT--AATATATAGTATTACATGACATTACAATGTTTAATCATTTATGCACATAT--ATA
66 GATTAAATAAAATATATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATAAATA
* * * * * * *
118933259 --AA-CTA-T-TA-A-TATATGATATGGTATAACATTATATAGTATAGTAGGGTGACTAACTTTC
131 TTAATATATTATATACTATATGATATGATATAATATTATATAATAAAATAAGG-G-CTAACTTTC
* * * * *
118933317 TAATATACAAAAAGTATA-AGGATTTAGAACATATTTAAACCCGTAT
194 AAATATAGAAAAA-TATAGA-GACTTAGAACATATTTCAACCAGTAT
* *
118933363 AATAACAAACAATAAT-ATATAATA-ATTAATATA-TAATATGTACTACTATTATTAACTATTAT
1 AATAATAAACAATAATAAT-TAATATA-TAATGTACTAATA--T--TA-TA-TA-TAACTATTAT
* * *
118933425 TATATTATAAATTATAATAAAATAAATAGTATTAAATGATATTATAATGTTTAATCATTAATGCA
57 TATATTATAGATTA-AATAAAATATATAGTATTACATGATATTATAATGTTTAATCATTAATGCA
118933490 TATATAAAGTATTAATATATTATATACTATATGATATGATATAATATTATATAATAAAATAAGAG
121 TATATAAA-TATTAATATATTATATACTATATGATATGATATAATATTATATAATAAAATAAG-G
*
118933555 AGCTAACTTTCAAATGTATGAAAAATATAGAGACTTAGAACATATTTCAACCAGTAT
184 -GCTAACTTTCAAATATA-GAAAAATATAGAGACTTAGAACATATTTCAACCAGTAT
*
118933612 AATAATAAACAATAATAATTAATATATAATGTACTAATATTATATATAACTATTATTATATTATG
1 AATAATAAACAATAATAATTAATATATAATGTACTAATATTATATATAACTATTATTATATTATA
* *
118933677 GATTACAATAAAAGATATAGTATTACATGATATTATAATGTTTAATCATTGATGCATATATATAA
66 GATTA-AATAAAATATATAGTATTACATGATATTATAATGTTTAATCATTAATGC--ATATATAA
* ** * * * ** *
118933742 ACTGTTAATATATTATATACTATATGATATGATATGTTATAACATTATAGTAGAAGGGCTAACTT
128 A-TATTAATATATTATATACTATATGATATGATATAATATTATATAATAAAATAAGGGCTAACTT
* * * * * *
118933807 TCAAATTTACG-AAAGTATAGAGGCTTCGAGCATATTTCAACTAGTAT
192 TCAAATATA-GAAAAATATAGAGACTTAGAACATATTTCAACCAGTAT
118933854 AA
1 AA
118933856 AAAATGAACG
Statistics
Matches: 405, Mismatches: 56, Indels: 50
0.79 0.11 0.10
Matches are distributed among these distances:
227 6 0.01
228 24 0.06
229 1 0.00
231 2 0.00
232 1 0.00
233 2 0.00
234 20 0.05
237 2 0.00
239 44 0.11
241 1 0.00
242 35 0.09
243 84 0.21
244 5 0.01
245 58 0.14
246 3 0.01
247 2 0.00
248 2 0.00
249 97 0.24
250 16 0.04
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (238 bp):
AATAATAAACAATAATAATTAATATATAATGTACTAATATTATATATAACTATTATTATATTATA
GATTAAATAAAATATATAGTATTACATGATATTATAATGTTTAATCATTAATGCATATATAAATA
TTAATATATTATATACTATATGATATGATATAATATTATATAATAAAATAAGGGCTAACTTTCAA
ATATAGAAAAATATAGAGACTTAGAACATATTTCAACCAGTAT
Found at i:118934327 original size:53 final size:54
Alignment explanation
Indices: 118934247--118934357 Score: 188
Period size: 54 Copynumber: 2.1 Consensus size: 54
118934237 GTAACGGTTT
*
118934247 ATTTTAAATTTTAAATATTATTTAATA-TTTTTTCCTTTATGTAATTTTAATTA
1 ATTTTAAATTTTAAATATTATTTAATATTTTTTTCATTTATGTAATTTTAATTA
* *
118934300 ATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAATTA
1 ATTTTAAATTTTAAATATTATTTAATATTTTTTTCATTTATGTAATTTTAATTA
118934354 ATTT
1 ATTT
118934358 GTATTTCATA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 25 0.46
54 29 0.54
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (54 bp):
ATTTTAAATTTTAAATATTATTTAATATTTTTTTCATTTATGTAATTTTAATTA
Found at i:118934338 original size:29 final size:29
Alignment explanation
Indices: 118934255--118934338 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 29
118934245 TTATTTTAAA
* *
118934255 TTTTAAATATTATTTAATA-TTTTTTCCT
1 TTTTGAATATTATTTAATATTTTTTTCAT
* * ** *
118934283 TTATG--TAAT-TTTAAT-TAATTTTAAT
1 TTTTGAATATTATTTAATATTTTTTTCAT
118934308 TTTTGAATATTATTTAATATTTTTTTCAT
1 TTTTGAATATTATTTAATATTTTTTTCAT
118934337 TT
1 TT
118934339 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 12, Indels: 9
0.65 0.20 0.15
Matches are distributed among these distances:
25 15 0.38
26 3 0.08
27 3 0.08
28 9 0.23
29 9 0.23
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTGAATATTATTTAATATTTTTTTCAT
Found at i:118934365 original size:30 final size:29
Alignment explanation
Indices: 118934268--118934366 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 29
118934258 TAAATATTAT
*
118934268 TTAATATTT-TTTCCTTTATGTAATTTTAA
1 TTAAT-TTTATTTCATTTATGTAATTTTAA
* * *
118934297 TTAATTTTA----ATTTTTG-AATATTAT
1 TTAATTTTATTTCATTTATGTAATTTTAA
*
118934321 TTAATATTTTTTTCATTTATGTAATTTTAA
1 TTAAT-TTTATTTCATTTATGTAATTTTAA
118934351 TTAATTTGTATTTCAT
1 TTAATTT-TATTTCAT
118934367 AATTAATCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
24 11 0.21
25 8 0.15
28 3 0.06
29 13 0.25
30 18 0.34
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (29 bp):
TTAATTTTATTTCATTTATGTAATTTTAA
Found at i:118935291 original size:7 final size:7
Alignment explanation
Indices: 118935281--118935305 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
118935271 AGTCATTTCA
118935281 TATTTAG
1 TATTTAG
118935288 TATTTAG
1 TATTTAG
118935295 TATTTAG
1 TATTTAG
118935302 TATT
1 TATT
118935306 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:118937172 original size:18 final size:18
Alignment explanation
Indices: 118937149--118937183 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
118937139 ACAATTTGGT
118937149 CTCCTTCACCAGGCTGGG
1 CTCCTTCACCAGGCTGGG
* *
118937167 CTCCTTTATCAGGCTGG
1 CTCCTTCACCAGGCTGG
118937184 TCTTATCAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.34, G:0.26, T:0.29
Consensus pattern (18 bp):
CTCCTTCACCAGGCTGGG
Found at i:118940706 original size:18 final size:18
Alignment explanation
Indices: 118940683--118940721 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
118940673 ATGCCAAGTG
*
118940683 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
118940701 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
118940719 TGT
1 TGT
118940722 TTCTTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:118944522 original size:126 final size:126
Alignment explanation
Indices: 118944279--118944785 Score: 723
Period size: 126 Copynumber: 4.0 Consensus size: 126
118944269 CTAAGGCCAA
*
118944279 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTC-ATAAATTTTGCTGACATT
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTAT-AATTTTGCTGACAGT
* * * * *
118944343 GCATCCTGCTTGAAGTGTTTTTGACACTATTTTTTTAGAAACATCTTTTCAAAATTATTTTT
65 GCATCCTACTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
* *
118944405 TCAAGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-TTTTTCTCTATAATTTTGCTGACAGA
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTT-TCTATAATTTTGCTGACAGT
* * *
118944469 GCATCCTATTTGAAGTGTTTTTGACACTATTTGTTCATAAACGTCTTCGCAAAATTATTTTT
65 GCATCCTACTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
* ** * * * *
118944531 TCATGAACTATTGTAGAAAAAGAGCGTCCACGTGATAACTTTTTCCCATATTTTTGCTGACAGTG
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTATAATTTTGCTGACAGTG
* * * *
118944596 CATCCTACTTGAAGCGTTTTTGACACTATTTGTTTAGAAATGTCTTCTTAAAATTATTTTT
66 CATCCTACTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
* *
118944657 TCATGAACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCTATATTTTTGCTGACAGTG
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTATAATTTTGCTGACAGTG
* * *
118944722 CATCCTACTTAAAGCT-TTTTTTACACTATTTGTTCATAAACGTCTTCTCAAAATTATTTTT
66 CATCCTACTTGAAG-TGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
118944783 TCA
1 TCA
118944786 GGGTAAAAAT
Statistics
Matches: 336, Mismatches: 41, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
125 5 0.01
126 324 0.96
127 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (126 bp):
TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTATAATTTTGCTGACAGTG
CATCCTACTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
Found at i:118944883 original size:28 final size:29
Alignment explanation
Indices: 118944846--118944923 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 29
118944836 TTTAAAAAAA
118944846 CTAAACCCTAATTTAATTAAATT-AAA-C
1 CTAAACCCTAATTTAATTAAATTAAAATC
* *
118944873 CTTAAACCCTAATTTAATTGATTTAAAATC
1 C-TAAACCCTAATTTAATTAAATTAAAATC
*
118944903 CTAGAACCCTAATTTACTTAA
1 CTA-AACCCTAATTTAATTAA
118944924 TTTATTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
27 1 0.02
28 20 0.47
29 5 0.12
30 17 0.40
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (29 bp):
CTAAACCCTAATTTAATTAAATTAAAATC
Found at i:118944927 original size:30 final size:29
Alignment explanation
Indices: 118944847--118944927 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 29
118944837 TTAAAAAAAC
*
118944847 TAAACCCTAATTTAATTAAATT-AAACCT
1 TAAACCCTAATTTAATTAATTTAAAACCT
*
118944875 TAAACCCTAATTTAATTGATTTAAAATCC-
1 TAAACCCTAATTTAATTAATTTAAAA-CCT
*
118944904 TAGAACCCTAATTTACTTAATTTA
1 TA-AACCCTAATTTAATTAATTTA
118944928 TTTAAAAACC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.43
29 5 0.11
30 21 0.46
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (29 bp):
TAAACCCTAATTTAATTAATTTAAAACCT
Found at i:118944948 original size:7 final size:7
Alignment explanation
Indices: 118944933--118944965 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
118944923 ATTTATTTAA
118944933 AAACCAT
1 AAACCAT
*
118944940 AAACTAT
1 AAACCAT
118944947 AAACCAT
1 AAACCAT
118944954 AAACCAT
1 AAACCAT
118944961 AAACC
1 AAACC
118944966 TTAATTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCAT
Found at i:118944982 original size:17 final size:17
Alignment explanation
Indices: 118944960--118944995 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
118944950 CCATAAACCA
* *
118944960 TAAACCTTAATTTATTT
1 TAAACCCTAATTTAATT
118944977 TAAACCCTAATTTAATT
1 TAAACCCTAATTTAATT
118944994 TA
1 TA
118944996 TTTAAAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAACCCTAATTTAATT
Found at i:118945168 original size:42 final size:41
Alignment explanation
Indices: 118945114--118945194 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 41
118945104 TACTAAAATT
*
118945114 CTAAACCCTAACTTGTTTTAACAAAAACCTAAACACTAAACA
1 CTAAACCCTAACTTATTTTAAC-AAAACCTAAACACTAAACA
* * * *
118945156 CTAAACCTTAACTTATTTTAGCAAAACCTTAACCCTAAA
1 CTAAACCCTAACTTATTTTAACAAAACCTAAACACTAAA
118945195 AACCCTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 15 0.44
42 19 0.56
ACGTcount: A:0.44, C:0.26, G:0.02, T:0.27
Consensus pattern (41 bp):
CTAAACCCTAACTTATTTTAACAAAACCTAAACACTAAACA
Found at i:118954036 original size:12 final size:12
Alignment explanation
Indices: 118954019--118954050 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
118954009 ATGAAGGATA
118954019 ATATATATGTGT
1 ATATATATGTGT
*
118954031 ATATATACGTGT
1 ATATATATGTGT
118954043 ATATATAT
1 ATATATAT
118954051 ATATATCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (12 bp):
ATATATATGTGT
Found at i:118955128 original size:46 final size:47
Alignment explanation
Indices: 118955060--118955151 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 47
118955050 CACTGATAAG
118955060 TGAGATGGGCAATTCAGTGACATTTGCAAGCTTGTATTAAACATCTT
1 TGAGATGGGCAATTCAGTGACATTTGCAAGCTTGTATTAAACATCTT
118955107 TGAGAT-GGCAATTCAGTGACATTTGCAAGCTTGTATTAAACATCT
1 TGAGATGGGCAATTCAGTGACATTTGCAAGCTTGTATTAAACATCT
118955152 CTACAGATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 39 0.87
47 6 0.13
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (47 bp):
TGAGATGGGCAATTCAGTGACATTTGCAAGCTTGTATTAAACATCTT
Found at i:118956281 original size:9 final size:9
Alignment explanation
Indices: 118956267--118956293 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
118956257 AAATTAACAT
118956267 AAATAATAA
1 AAATAATAA
118956276 AAATAATAA
1 AAATAATAA
118956285 AAATAATAA
1 AAATAATAA
118956294 TAGCAGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAATAATAA
Found at i:118960264 original size:19 final size:19
Alignment explanation
Indices: 118960218--118960265 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
118960208 GTATATATTT
118960218 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
118960236 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
118960255 TAAGTTTTATT
1 TAAATTTTATT
118960266 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:118960327 original size:43 final size:42
Alignment explanation
Indices: 118960274--118960371 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 42
118960264 TTCATATTCT
118960274 AGAAA-TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATA
1 AGAAACTATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATA
* * *
118960315 AGGAAACTATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATA
1 A-GAAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATA
118960358 AGAGAACTATTTTC
1 AGA-AACTATTTTC
118960372 CCAATTAGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
41 1 0.02
42 6 0.12
43 42 0.84
44 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (42 bp):
AGAAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATA
Found at i:118965040 original size:43 final size:43
Alignment explanation
Indices: 118964992--118965084 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
118964982 ATTCTAGAAA
118964992 TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * *
118965035 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
118965078 TATTTTC
1 TATTTTC
118965085 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:118965805 original size:20 final size:20
Alignment explanation
Indices: 118965780--118965822 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
118965770 GAGCATAGAG
118965780 GTTAAATCAGATGCTGGTCA
1 GTTAAATCAGATGCTGGTCA
118965800 GTTAAATCAGATGCTGGTCA
1 GTTAAATCAGATGCTGGTCA
118965820 GTT
1 GTT
118965823 GACTAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (20 bp):
GTTAAATCAGATGCTGGTCA
Found at i:118970751 original size:26 final size:26
Alignment explanation
Indices: 118970706--118970758 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
118970696 GATCAGTCTA
*
118970706 TTATGTATGTTATGCATATTATTGTT
1 TTATGTATGTTATGCATATTACTGTT
* **
118970732 TTATGTTTGTTATGTTTATTACTGTT
1 TTATGTATGTTATGCATATTACTGTT
118970758 T
1 T
118970759 ATAATATGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.04, G:0.15, T:0.62
Consensus pattern (26 bp):
TTATGTATGTTATGCATATTACTGTT
Found at i:118970780 original size:13 final size:13
Alignment explanation
Indices: 118970764--118970788 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118970754 TGTTTATAAT
118970764 ATGTATGTATATC
1 ATGTATGTATATC
118970777 ATGTATGTATAT
1 ATGTATGTATAT
118970789 TACAGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
ATGTATGTATATC
Found at i:118971174 original size:12 final size:12
Alignment explanation
Indices: 118971157--118971189 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
118971147 TAGCCCGCCC
118971157 ATATTAATTTTT
1 ATATTAATTTTT
118971169 ATATT-ATTTTT
1 ATATTAATTTTT
118971180 ATA-TAATTTT
1 ATATTAATTTT
118971190 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:118971359 original size:30 final size:30
Alignment explanation
Indices: 118971316--118971374 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
118971306 AACAAGAAAT
*
118971316 TGTCTCTAAAATAATAACAAATTTAACAAA
1 TGTCTCTAAAATAATAACAAAATTAACAAA
* *
118971346 TGTCTTTAGAATAATAACAAAATTAACAA
1 TGTCTCTAAAATAATAACAAAATTAACAA
118971375 TAAAATAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.31
Consensus pattern (30 bp):
TGTCTCTAAAATAATAACAAAATTAACAAA
Found at i:118973684 original size:42 final size:43
Alignment explanation
Indices: 118973584--118973728 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
118973574 AACTCGTACA
* * * *
118973584 ATGCCAACGTCCCAAAC-GAGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCATATATCG
*
118973627 ATGTC-ACTGTCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATCATATATCG
* * *
118973669 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATC-TCAAATCA
1 ATGCCAACGTCCCAGACAGGGTCTTACACG-AAATCAT-ATATCG
118973713 ATGCCAACGTCCCAGA
1 ATGCCAACGTCCCAGA
118973729 TGTGGTCTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
42 30 0.34
43 39 0.45
44 18 0.21
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCATATATCG
Found at i:118980155 original size:19 final size:19
Alignment explanation
Indices: 118980109--118980175 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
118980099 TCATTATTTT
*
118980109 AAAAAATTCA-AAATAATTAC
1 AAAAAATT-ATAAAT-ATTAA
* *
118980129 AAATAATTTTAAATATTAA
1 AAAAAATTATAAATATTAA
*
118980148 AAAAAATTATAAAAATTAGTA
1 AAAAAATTATAAATATTA--A
118980169 AAAAAAT
1 AAAAAAT
118980176 AATGGAAGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 19 0.50
20 11 0.29
21 8 0.21
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (19 bp):
AAAAAATTATAAATATTAA
Found at i:118982723 original size:25 final size:24
Alignment explanation
Indices: 118982656--118982769 Score: 81
Period size: 23 Copynumber: 4.6 Consensus size: 24
118982646 ATACATATTA
* *
118982656 TATATATTTTATAATTAT-TTACT
1 TATATTTTTTATTATTATATTACT
*
118982679 TATATCTTATTA-TATTATATTACT
1 TATAT-TTTTTATTATTATATTACT
* *
118982703 TCATATTTTTTATTATCATATTA-A
1 T-ATATTTTTTATTATTATATTACT
* **
118982727 TATATATTTTAACATATATCATTACT
1 TATATTTTTTATTAT-TAT-ATTACT
118982753 TATTATTTATTTATTAT
1 TA-TATTT-TTTATTAT
118982770 ATTTTTATCA
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
23 21 0.31
24 18 0.26
25 17 0.25
26 2 0.03
27 4 0.06
28 6 0.09
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (24 bp):
TATATTTTTTATTATTATATTACT
Found at i:118994822 original size:206 final size:206
Alignment explanation
Indices: 118994468--118995378 Score: 1360
Period size: 206 Copynumber: 4.5 Consensus size: 206
118994458 GCAGCAGCAC
** * * *
118994468 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTT
1 AGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTT
118994533 ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
66 ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
* * * *
118994598 ATAATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGTATCTCCATATTCGACGAAG
131 ATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGACGGAG
118994663 AGCAGATACAT
196 AGCAGATACAT
* *
118994674 AGCAGATCTCACCTTCAGATGATTATACTGAAGCAGATCCAAGATGGTTTGGCATTCTTGTGCTT
1 AGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTT
118994739 ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
66 ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
* * * *
118994804 ATGATTTGGTATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCATATTCGATGGAG
131 ATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGACGGAG
118994869 AGCAGATACAT
196 AGCAGATACAT
* * * * *
118994880 AACGGATCCCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGTGCTT
1 AGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTT
* * * * *
118994945 ACAAGGAGCGAATCGAAGACATAGCTAATTTGGCTTTCACGTGCTTGCGCTGAAGCAAATCTAAG
66 ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
*
118995010 ATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGATGGAG
131 ATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGACGGAG
118995075 AGCAGATACAT
196 AGCAGATACAT
* * **
118995086 AGCAGATCTCACCTTCAAATGTTTATACTGAAGTAGATCCAAGATGATTTGATATTCTTGTG-TT
1 AGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTT
**
118995150 CACAAGGAACAAATCGAAGACATAATTGATTTGGCTTTCACGTGC-T----T--A-CG--TCTAA
66 -ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAA
* * * * *
118995205 GATGATTTGACATTTCTGTATTGTCAGAGAAAAAATCAAAGTTTGGCGTCTCCATATTCGACGGA
130 GATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGACGGA
118995270 GAGCAGATACAT
195 GAGCAGATACAT
*
118995282 AGCAGATCTCACCTTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT
1 AGCAGATCTCACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCT
* *
118995346 TACAAGGAACAAATCGAAGACGTAGCAGATTTG
65 TACAAGGAACAAATCGAAGACATAGCTGATTTG
118995379 ACCTTATTGA
Statistics
Matches: 648, Mismatches: 54, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
196 158 0.24
197 5 0.01
198 1 0.00
199 1 0.00
201 1 0.00
205 3 0.00
206 479 0.74
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AGCAGATCTCACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGCTT
ACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCGAATCTAAG
ATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATATTCGACGGAG
AGCAGATACAT
Found at i:118997076 original size:25 final size:24
Alignment explanation
Indices: 118997009--118997122 Score: 81
Period size: 23 Copynumber: 4.6 Consensus size: 24
118996999 ATACATATTA
* *
118997009 TATATATTTTATAATTAT-TTACT
1 TATATTTTTTATTATTATATTACT
*
118997032 TATATCTTATTA-TATTATATTACT
1 TATAT-TTTTTATTATTATATTACT
* *
118997056 TCATATTTTTTATTATCATATTA-A
1 T-ATATTTTTTATTATTATATTACT
* **
118997080 TATATATTTTAACATATATCATTACT
1 TATATTTTTTATTAT-TAT-ATTACT
118997106 TATTATTTATTTATTAT
1 TA-TATTT-TTTATTAT
118997123 ATTTTTATCA
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
23 21 0.31
24 18 0.26
25 17 0.25
26 2 0.03
27 4 0.06
28 6 0.09
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (24 bp):
TATATTTTTTATTATTATATTACT
Found at i:119000707 original size:4 final size:4
Alignment explanation
Indices: 119000698--119000726 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
119000688 AGCAAACGTG
119000698 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
119000727 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:119001554 original size:47 final size:47
Alignment explanation
Indices: 119001490--119001600 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
119001480 GACATTGAGT
*
119001490 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
119001537 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
119001584 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
119001601 CTTATCCTGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:119005241 original size:32 final size:32
Alignment explanation
Indices: 119005200--119005264 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
119005190 TTTCATATCC
119005200 TTAAAATTTAATTTAAAATCATTCTTACTAAT
1 TTAAAATTTAATTTAAAATCATTCTTACTAAT
119005232 TTAAAATTTAATTTAAAATCATTCTTACTAAT
1 TTAAAATTTAATTTAAAATCATTCTTACTAAT
119005264 T
1 T
119005265 CATCACAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (32 bp):
TTAAAATTTAATTTAAAATCATTCTTACTAAT
Found at i:119006299 original size:17 final size:19
Alignment explanation
Indices: 119006277--119006344 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
119006267 ATGGAAATAT
119006277 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
119006294 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
119006313 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
119006330 AATCTTAGATATGAT
1 AATCTTACATATGAT
119006345 TATGATTTTG
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
17 22 0.46
18 1 0.02
19 25 0.52
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:119006309 original size:19 final size:19
Alignment explanation
Indices: 119006285--119006344 Score: 106
Period size: 19 Copynumber: 3.3 Consensus size: 19
119006275 ATAATCTTCA
119006285 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119006304 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119006323 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119006340 ATGAT
1 ATGAT
119006345 TATGATTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.39
19 25 0.61
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:119015024 original size:131 final size:131
Alignment explanation
Indices: 119014864--119015146 Score: 458
Period size: 131 Copynumber: 2.2 Consensus size: 131
119014854 TGTTAAGGAG
*
119014864 CAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTG
1 CAGATCGAAGACATAGCAGATTTGCCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTG
* * * *
119014929 GCATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGA
66 ACATATCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGA
119014994 A
131 A
* ** *
119014995 CAGATCGAAGACATAGCAGATTTTCCTTTCACGTGTTTACGCTGTTGCAGATCTACGATGATTTG
1 CAGATCGAAGACATAGCAGATTTGCCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTG
*
119015060 ACATATCTGTACTGTCAGAGAACAAATCGAAGGAACAGATTTGGCATCTCCATATTCGACGAAGA
66 ACATATCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGA
*
119015125 G
131 A
*
119015126 CAGATCAAAGACATAGCAGAT
1 CAGATCGAAGACATAGCAGAT
119015147 CTGACCTTCA
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 140 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (131 bp):
CAGATCGAAGACATAGCAGATTTGCCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTG
ACATATCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGA
A
Found at i:119015204 original size:77 final size:78
Alignment explanation
Indices: 119015097--119015309 Score: 295
Period size: 78 Copynumber: 2.7 Consensus size: 78
119015087 CGAAGGAACA
** * * *
119015097 GATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
119015162 GCA-ATCCAAGAT
66 ACAGATCCAAGAT
* *
119015174 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
119015238 AACAGATCCAAGAT
65 AACAGATCCAAGAT
* * * *
119015252 GATTTGGCATCTCTGTATTAAACGGTGAGTAGATCGAAGACATAGCAGATCTAACCTT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT
119015310 AGGATGTTTT
Statistics
Matches: 120, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
76 1 0.01
77 58 0.48
78 60 0.50
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
ACAGATCCAAGAT
Found at i:119015530 original size:298 final size:287
Alignment explanation
Indices: 119015174--119015729 Score: 715
Period size: 298 Copynumber: 1.9 Consensus size: 287
119015164 AATCCAAGAT
* * *
119015174 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAA
* * *
119015239 ACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGTGAGTAGATCGAAGACATAGCAGATCT
66 ACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGGGAGGAGATCGAAGACATAACAG----
** * *
119015304 AACCTTAGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATC-CTTGCGTT-GACAAG
127 -A--TT-GGA--CCTT--CATCGAAGCAGATCCAAGATGATTTGGCATCTC-TGCATTAGACAAG
* * * *
119015367 GAGCAGATCGAAGACATAGCAGATTTGGA-TTTCACGTGTTTACGCTGAAGCAGATCTAAGATGA
183 GAGCAGATCGAAGACATAGCAGATCT-GACCTTCACGTGTTTACACTGAAGCAGATCCAAGATGA
119015431 TTTGGCATCTCTATACTGTTAGAGAACAAATCGAAGAAACA
247 TTTGGCATCTCTATACTGTTAGAGAACAAATCGAAGAAACA
* * *
119015472 GATTTGGCATCTCTATATTCGACGGAGAGTAGATCGAAGACATAGCAAATCT-GACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAAAT-TGGACCTTCATTGA
** *
119015536 GGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGGAGATCGAAGACATAACAGATT
65 AACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGGGAGGAGATCGAAGACATAACAGATT
* * *
119015601 GGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAA
130 GGACCTTCATCGAAGCAGATCCAAGATGATTTGGCATCTCTGCATTAGACAAGGAGCAGATCGAA
* * *
119015666 GACATAGCAGATCTGACCTTCATGTGTTTACATTGAAGTAGATCCAAGATGATTTGGCATCTCT
195 GACATAGCAGATCTGACCTTCACGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCT
119015730 GTATTAGACG
Statistics
Matches: 228, Mismatches: 26, Indels: 19
0.84 0.10 0.07
Matches are distributed among these distances:
286 35 0.15
287 72 0.32
288 2 0.01
290 3 0.01
291 2 0.01
293 1 0.00
298 112 0.49
299 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (287 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAA
ACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGGGAGGAGATCGAAGACATAACAGATTG
GACCTTCATCGAAGCAGATCCAAGATGATTTGGCATCTCTGCATTAGACAAGGAGCAGATCGAAG
ACATAGCAGATCTGACCTTCACGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTAT
ACTGTTAGAGAACAAATCGAAGAAACA
Found at i:119015606 original size:78 final size:78
Alignment explanation
Indices: 119015472--119015854 Score: 527
Period size: 78 Copynumber: 4.8 Consensus size: 78
119015462 CGAAGAAACA
* * * * * *
119015472 GATTTGGCATCTCTATATTCGACGGAGAGTAGATCGAAGACATAGCAAATCTGACCTTCATTGAG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
119015537 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
119015550 GATTTGGCATCTCTGTATTAGACGGGGAGGAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
119015614 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
119015628 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGA-C--C------
*
119015693 TTACATTGAAGTAGATCCAAGAT
57 TT-CATTGAAGCAGATCCAAGAT
* *
119015716 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
119015780 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
119015794 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
119015855 GTGTTTACAT
Statistics
Matches: 273, Mismatches: 18, Indels: 28
0.86 0.06 0.09
Matches are distributed among these distances:
77 1 0.00
78 193 0.71
79 5 0.02
81 1 0.00
85 1 0.00
87 4 0.01
88 68 0.25
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:119015747 original size:375 final size:375
Alignment explanation
Indices: 119014966--119015766 Score: 1207
Period size: 375 Copynumber: 2.1 Consensus size: 375
119014956 CGAAGAAATA
** * * * *
119014966 GATTTGGCATCTCCATATTCGACGGAGAACAGATCGAAGACATAGCAGATTTTCCTTTCACGTGT
1 GATTTGGCATCTCTGTATT-GACGGGGAGCAGATCGAAGACATAGCAGATTTGCATTTCACGTGT
** * * *
119015031 TTACGCTGTTGCAGATCTACGATGATTTGACATATCTGTACTGTCAGAGAACAAATCGAAGGAAC
65 TTACGCTGAAGCAGATCTAAGATGATTTGACATATCTATACTGTCAGAGAACAAATCGAAGAAAC
*
119015096 AGATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGA
130 AGATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAAATCTGACCTTCATTGA
119015161 AGCAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
195 AGCAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
*
119015226 GACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGTGAGTAGATCGAAG
260 GACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGTGAGCAGATCGAAG
119015291 ACATAGCAGATCTAACCTTAGGATGTTTTCACATCGAAGTAGATCCAAGAT
325 ACATAGCAGATCTAACCTTAGGATGTTTTCACATCGAAGTAGATCCAAGAT
** ** *
119015342 GATTTGGCATC-CTTGCGTTGACAAGGAGCAGATCGAAGACATAGCAGATTTGGATTTCACGTGT
1 GATTTGGCATCTC-TGTATTGACGGGGAGCAGATCGAAGACATAGCAGATTTGCATTTCACGTGT
* * *
119015406 TTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTATACTGTTAGAGAACAAATCGAAGAAAC
65 TTACGCTGAAGCAGATCTAAGATGATTTGACATATCTATACTGTCAGAGAACAAATCGAAGAAAC
* * * *
119015471 AGATTTGGCATCTCTATATTCGACGGAGAGTAGATCGAAGACATAGCAAATCTGACCTTCATTGA
130 AGATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAAATCTGACCTTCATTGA
* *
119015536 GGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGGAGATCGAAGACATAACAGATT
195 AGCA-ATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATT
* *
119015601 GGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGG-GAGCAGATCGA
259 GGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAAAC-GGTGAGCAGATCGA
* * *
119015665 AGACATAGCAGATCTGACCTT--CATGTGTTT-ACATTGAAGTAGATCCAAGAT
323 AGACATAGCAGATCTAACCTTAGGATGT-TTTCACATCGAAGTAGATCCAAGAT
* *
119015716 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATT
1 GATTTGGCATCTCTGTATT-GACGGGGAGCAGATCGAAGACATAGCAGATT
119015767 GGACCTTCAT
Statistics
Matches: 381, Mismatches: 38, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
374 39 0.10
375 190 0.50
376 150 0.39
377 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (375 bp):
GATTTGGCATCTCTGTATTGACGGGGAGCAGATCGAAGACATAGCAGATTTGCATTTCACGTGTT
TACGCTGAAGCAGATCTAAGATGATTTGACATATCTATACTGTCAGAGAACAAATCGAAGAAACA
GATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAAATCTGACCTTCATTGAA
GCAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGG
ACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGTGAGCAGATCGAAGA
CATAGCAGATCTAACCTTAGGATGTTTTCACATCGAAGTAGATCCAAGAT
Found at i:119015757 original size:88 final size:88
Alignment explanation
Indices: 119015608--119015921 Score: 434
Period size: 88 Copynumber: 3.6 Consensus size: 88
119015598 ATTGGACCTT
*
119015608 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAG
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
119015673 CAGATCTGACCTTCATGTGTTTA
66 CAGATCTGACCTTCATGTGTTTA
* * *
119015696 CATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAA
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
119015761 CAGAT-TGGA-C--C------TT-
66 CAGATCT-GACCTTCATGTGTTTA
119015774 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
*
119015839 CAGATCTAACCTTCATGTGTTTA
66 CAGATCTGACCTTCATGTGTTTA
** *
119015862 CATCAAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
1 CATTGAAGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
119015922 GAGATAACAG
Statistics
Matches: 199, Mismatches: 11, Indels: 28
0.84 0.05 0.12
Matches are distributed among these distances:
78 68 0.34
79 4 0.02
81 1 0.01
85 1 0.01
87 4 0.02
88 86 0.43
92 35 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (88 bp):
CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAG
CAGATCTGACCTTCATGTGTTTA
Found at i:119015813 original size:166 final size:166
Alignment explanation
Indices: 119015530--119015916 Score: 666
Period size: 166 Copynumber: 2.3 Consensus size: 166
119015520 ATCTGACCTT
* * *
119015530 CATTGAGGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGGAGATCGAAGACATAA
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAA
119015595 CAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAG
66 CAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAG
*
119015660 ATCGAAGACATAGCAGATCTGACCTTCATGTGTTTA
131 ATCGAAGACATAGCAGATCTAACCTTCATGTGTTTA
*
119015696 CATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAA
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAA
*
119015761 CAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAG
66 CAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAG
119015826 ATCGAAGACATAGCAGATCTAACCTTCATGTGTTTA
131 ATCGAAGACATAGCAGATCTAACCTTCATGTGTTTA
**
119015862 CATCAAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCA
1 CATTGAAGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGACGGGGAGCA
119015917 AATCGGAGAT
Statistics
Matches: 208, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
166 177 0.85
170 31 0.15
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (166 bp):
CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAA
CAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAG
ATCGAAGACATAGCAGATCTAACCTTCATGTGTTTA
Found at i:119015947 original size:45 final size:45
Alignment explanation
Indices: 119015794--119016067 Score: 268
Period size: 45 Copynumber: 6.1 Consensus size: 45
119015784 GATCCAAGAT
*
119015794 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* ** * * * ** * *
119015841 GATCTAACCT-TCATGTGTTTACATC--AAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
119015886 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
119015931 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
119015975 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
119016020 GATTTGTCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
119016065 GAT
1 GAT
119016068 ATCGCCTTCC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 43 0.23
45 110 0.60
46 4 0.02
47 20 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:119016004 original size:89 final size:90
Alignment explanation
Indices: 119015868--119016067 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 90
119015858 TTTACATCAA
* **
119015868 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAG
119015932 ATTTGGCATCTCTGTATTAGACGGAG
65 ATTTGGCATCTCTGTATTAGACGGAG
** * * *
119015958 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAATAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGA
* * *
119016022 TTTGTCGTCTCTGTATTAGACGGGG
66 TTTGGCATCTCTGTATTAGACGGAG
119016047 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
119016068 ATCGCCTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
89 77 0.80
90 19 0.20
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGA
TTTGGCATCTCTGTATTAGACGGAG
Found at i:119016474 original size:19 final size:19
Alignment explanation
Indices: 119016378--119016474 Score: 155
Period size: 19 Copynumber: 5.3 Consensus size: 19
119016368 ATAATCTTCA
*
119016378 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
*
119016397 ATGAAATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119016416 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119016433 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119016451 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
119016470 ATGAT
1 ATGAT
119016475 TATGATTTTG
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
18 16 0.22
19 40 0.56
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:119025361 original size:17 final size:17
Alignment explanation
Indices: 119025341--119025373 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
119025331 TAATGTGGAC
119025341 TTGTTAGATGAAGATTT
1 TTGTTAGATGAAGATTT
*
119025358 TTGTTAGTTGAAGATT
1 TTGTTAGATGAAGATT
119025374 ATTATGGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (17 bp):
TTGTTAGATGAAGATTT
Found at i:119034824 original size:2 final size:2
Alignment explanation
Indices: 119034805--119034858 Score: 56
Period size: 2 Copynumber: 26.5 Consensus size: 2
119034795 ATTTCTAATG
* * *
119034805 TA TA TG TA TA TA TCA TA TA TG TG T- TA TA TA TA TCA TA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
119034848 TA TA TA TA TA T
1 TA TA TA TA TA T
119034859 TTTCAATATT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
1 1 0.02
2 41 0.89
3 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119034836 original size:20 final size:21
Alignment explanation
Indices: 119034805--119034858 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
119034795 ATTTCTAATG
* *
119034805 TATATGTATATATCATATATG
1 TATATATATATATCATATATA
*
119034826 TGT-TATATATATCATATATA
1 TATATATATATATCATATATA
119034846 TATATATATATAT
1 TATATATATATAT
119034859 TTTCAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (21 bp):
TATATATATATATCATATATA
Found at i:119046396 original size:13 final size:13
Alignment explanation
Indices: 119046380--119046404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119046370 TGGGCTTATA
119046380 TATTATTTATCAT
1 TATTATTTATCAT
119046393 TATTATTTATCA
1 TATTATTTATCA
119046405 ACCGATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATTTATCAT
Found at i:119047414 original size:39 final size:39
Alignment explanation
Indices: 119047371--119047450 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
119047361 ACAATAAACA
*
119047371 AGGACAATGAATGACTAAGAAGATTGATATTATATATAG
1 AGGACAATGAATGACTAAGAAAATTGATATTATATATAG
*
119047410 AGGACAATGAATGACTAAGAAAATTGTTATTATATATAG
1 AGGACAATGAATGACTAAGAAAATTGATATTATATATAG
119047449 AG
1 AG
119047451 TTGTGGCCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (39 bp):
AGGACAATGAATGACTAAGAAAATTGATATTATATATAG
Found at i:119048714 original size:43 final size:43
Alignment explanation
Indices: 119048667--119048748 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
119048657 GCTTTATGTA
* *
119048667 TGCCAGTATGTTTCCTTCGACTTATCCAATGATGCACTACAGG
1 TGCCAATATATTTCCTTCGACTTATCCAATGATGCACTACAGG
* * **
119048710 TGCCAATATATTTCCTTTGATTTATCCGGTGATGCACTA
1 TGCCAATATATTTCCTTCGACTTATCCAATGATGCACTA
119048749 TAGTGTCAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (43 bp):
TGCCAATATATTTCCTTCGACTTATCCAATGATGCACTACAGG
Found at i:119051776 original size:21 final size:22
Alignment explanation
Indices: 119051747--119051799 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 22
119051737 AATATGGTAC
119051747 AACAAATATACATAGTATACAA
1 AACAAATATACATAGTATACAA
119051769 AACAATATGAAATACATAGTATACAA
1 AACAA-AT---ATACATAGTATACAA
119051795 AACAA
1 AACAA
119051800 TATGAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 2 0.07
26 20 0.74
ACGTcount: A:0.60, C:0.13, G:0.06, T:0.21
Consensus pattern (22 bp):
AACAAATATACATAGTATACAA
Found at i:119051784 original size:26 final size:26
Alignment explanation
Indices: 119051754--119051805 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
119051744 TACAACAAAT
119051754 ATACATAGTATACAAAACAATATGAA
1 ATACATAGTATACAAAACAATATGAA
119051780 ATACATAGTATACAAAACAATATGAA
1 ATACATAGTATACAAAACAATATGAA
119051806 CAAACTACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.23
Consensus pattern (26 bp):
ATACATAGTATACAAAACAATATGAA
Found at i:119053757 original size:38 final size:39
Alignment explanation
Indices: 119053714--119053799 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
119053704 CTGTGCTGGG
* * *
119053714 GTACGGAGGTGCGGG-CGTGGCTGCTGGAGCGCTGGAGC
1 GTACGGAGGTGCGGGTCGGGGCTGCTGAAGCGCTGGACC
* * *
119053752 GTACGGTGCTGCGGGTTGGGGCTGCTGAAGCGCTGGACC
1 GTACGGAGGTGCGGGTCGGGGCTGCTGAAGCGCTGGACC
*
119053791 TTACGGAGG
1 GTACGGAGG
119053800 CGCTGGAGGC
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
38 13 0.34
39 25 0.66
ACGTcount: A:0.12, C:0.21, G:0.49, T:0.19
Consensus pattern (39 bp):
GTACGGAGGTGCGGGTCGGGGCTGCTGAAGCGCTGGACC
Found at i:119055162 original size:46 final size:46
Alignment explanation
Indices: 119055102--119055329 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
119055092 TTTGACATGA
* * * * * *
119055102 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
119055148 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
119055194 TGCCATGGAATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
119055240 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
119055286 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
119055330 AGAGCACACC
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:119060691 original size:30 final size:30
Alignment explanation
Indices: 119060624--119060691 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
119060614 CACCCTTAAA
* * *
119060624 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
119060654 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
119060683 AGTATTTAC
1 A-TATTTAC
119060692 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:119063483 original size:16 final size:17
Alignment explanation
Indices: 119063457--119063489 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
119063447 AAGTGAAATT
*
119063457 TAATCATTTTATTTAAA
1 TAATCATTTTAATTAAA
119063474 TAAT-ATTTTAATTAAA
1 TAATCATTTTAATTAAA
119063490 ATCATATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATCATTTTAATTAAA
Found at i:119067259 original size:24 final size:24
Alignment explanation
Indices: 119067232--119067291 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 24
119067222 TCTTTTGCTG
119067232 TTTCTTGCTTTGTTTCTGCTCTAT
1 TTTCTTGCTTTGTTTCTGCTCTAT
* *
119067256 TTTC--GC-CT-TTT-TGCTCTGT
1 TTTCTTGCTTTGTTTCTGCTCTAT
*
119067275 TGTCTTGCTTTGTTTCT
1 TTTCTTGCTTTGTTTCT
119067292 TTTTTTGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
19 10 0.37
20 3 0.11
21 3 0.11
22 3 0.11
23 3 0.11
24 5 0.19
ACGTcount: A:0.02, C:0.22, G:0.15, T:0.62
Consensus pattern (24 bp):
TTTCTTGCTTTGTTTCTGCTCTAT
Found at i:119068037 original size:16 final size:16
Alignment explanation
Indices: 119068018--119068052 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
119068008 GTTAAAATCC
* *
119068018 AAAAAAACCAAAAACT
1 AAAAAAACAAAAAAAT
119068034 AAAAAAACAAAAAAAT
1 AAAAAAACAAAAAAAT
119068050 AAA
1 AAA
119068053 TTAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.83, C:0.11, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAAAACAAAAAAAT
Found at i:119069650 original size:31 final size:31
Alignment explanation
Indices: 119069607--119069686 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
119069597 AATCTTATGT
119069607 TATTT-TATACATATAATTTATTTAAAAATC
1 TATTTGTATACATATAATTTATTTAAAAATC
* *
119069637 TATTTGTATACATAATTATGT-TTTAAAAATC
1 TATTTGTATACAT-ATAATTTATTTAAAAATC
*
119069668 TA-TTGCAT--ATATAATTTAT
1 TATTTGTATACATATAATTTAT
119069687 GATAAAATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
27 5 0.12
28 3 0.07
30 10 0.24
31 19 0.45
32 5 0.12
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (31 bp):
TATTTGTATACATATAATTTATTTAAAAATC
Found at i:119070942 original size:17 final size:18
Alignment explanation
Indices: 119070912--119070945 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
119070902 TCGACACTAA
119070912 TATTTTATTAATTTTTAT
1 TATTTTATTAATTTTTAT
119070930 TATTTTA-TAATTTTTA
1 TATTTTATTAATTTTTA
119070946 GCAATTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTATTAATTTTTAT
Found at i:119070961 original size:10 final size:9
Alignment explanation
Indices: 119070909--119070999 Score: 62
Period size: 9 Copynumber: 9.9 Consensus size: 9
119070899 GTTTCGACAC
119070909 TAAT-ATTT
1 TAATAATTT
*
119070917 TATTAATTT
1 TAATAATTT
* *
119070926 TTATTATTT
1 TAATAATTT
119070935 T-ATAATTTT
1 TAATAA-TTT
**
119070944 TAGCAATTCT
1 TAATAATT-T
119070954 TAATAATTCT
1 TAATAATT-T
119070964 TAAATAATTT
1 T-AATAATTT
*
119070974 T-TTATATTT
1 TAATA-ATTT
119070983 TAATAATTT
1 TAATAATTT
119070992 TAATAATT
1 TAATAATT
119071000 ATTTTAAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
8 8 0.12
9 34 0.52
10 16 0.25
11 7 0.11
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.59
Consensus pattern (9 bp):
TAATAATTT
Found at i:119072338 original size:25 final size:25
Alignment explanation
Indices: 119072310--119072357 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
119072300 GTTTTTTTAG
*
119072310 ATTCAT-TTCATGTTATTTTTATTGT
1 ATTCATGTTCAT-TTATTTGTATTGT
*
119072335 ATTCATGTTTATTTATTTGTATT
1 ATTCATGTTCATTTATTTGTATT
119072358 AATCGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.65
Consensus pattern (25 bp):
ATTCATGTTCATTTATTTGTATTGT
Found at i:119072341 original size:20 final size:20
Alignment explanation
Indices: 119072316--119072357 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
119072306 TTAGATTCAT
*
119072316 TTCATG-TTATTTTTATTGTA
1 TTCATGTTTATTTAT-TTGTA
119072336 TTCATGTTTATTTATTTGTA
1 TTCATGTTTATTTATTTGTA
119072356 TT
1 TT
119072358 AATCGTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.19, C:0.05, G:0.10, T:0.67
Consensus pattern (20 bp):
TTCATGTTTATTTATTTGTA
Found at i:119074090 original size:24 final size:23
Alignment explanation
Indices: 119074050--119074094 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
119074040 ATAAAAACAT
119074050 TTAAATAAAATACTATATAAAATG
1 TTAAATAAAATACTATA-AAAATG
*
119074074 TTAAATAATATGA-TATAAAAA
1 TTAAATAAAAT-ACTATAAAAA
119074095 GAACTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 14 0.74
25 1 0.05
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
TTAAATAAAATACTATAAAAATG
Found at i:119076727 original size:131 final size:131
Alignment explanation
Indices: 119076531--119076825 Score: 363
Period size: 131 Copynumber: 2.3 Consensus size: 131
119076521 TAACTATTCA
* * **
119076531 TTTAAAAATTCTTTAAAACGAAGGTAATGTTCGGTGTTTGGCAATTTGGGAAATCGTGTCCTATC
1 TTTAAAAATTC-TTAAAATGAAGGTAATGTTCGATGTTTGGCAATTAAGGAAATCGTGTCCTATC
* **
119076596 GTACTGGGTTGCAATTTTCCGCTTGTTCAAAATAATCGAATATTCC-TTTGGAATTTCACTCAT-
65 GTACTGGGTTGCAATTTTCCGCTTGTTCAAAATAATCGAATA-CCCTTTTAAAATTTCACTCATG
119076659 ATC
129 ATC
119076662 TTTAAAAATTCTTCAAAATGAAGGTAATGTTCGATGTTTGGCAATTCAAGG-AATCGTG-CTCTA
1 TTTAAAAATTCTT-AAAATGAAGGTAATGTTCGATGTTTGGCAATT-AAGGAAATCGTGTC-CTA
* * * *
119076725 TCGTGCTGGGTTGCGATTTTCTGTTTGTTCAAAATAATCGAATACCCTTTTAAAATTTCACTCAT
63 TCGTACTGGGTTGCAATTTTCCGCTTGTTCAAAATAATCGAATACCCTTTTAAAATTTCACTCAT
*
119076790 GTTC
128 GATC
* *
119076794 TCT--AAATTC-TAAAAT-AAGGCAATGTTCGATGT
1 TTTAAAAATTCTTAAAATGAAGGTAATGTTCGATGT
119076826 CTAAAAATTC
Statistics
Matches: 145, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
127 16 0.11
128 5 0.03
129 1 0.01
130 11 0.08
131 106 0.73
132 6 0.04
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (131 bp):
TTTAAAAATTCTTAAAATGAAGGTAATGTTCGATGTTTGGCAATTAAGGAAATCGTGTCCTATCG
TACTGGGTTGCAATTTTCCGCTTGTTCAAAATAATCGAATACCCTTTTAAAATTTCACTCATGAT
C
Found at i:119083901 original size:17 final size:18
Alignment explanation
Indices: 119083869--119083902 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
119083859 TATATTTATA
*
119083869 AATTTTATACTTTTTAAT
1 AATTTTATAATTTTTAAT
119083887 AATTTT-TAATTTTTAA
1 AATTTTATAATTTTTAA
119083903 AACATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
AATTTTATAATTTTTAAT
Found at i:119084099 original size:12 final size:12
Alignment explanation
Indices: 119084084--119084109 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119084074 AAAAGAGATA
119084084 AAAAAATTAAAT
1 AAAAAATTAAAT
119084096 AAAAAATTAAAT
1 AAAAAATTAAAT
119084108 AA
1 AA
119084110 TATATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAATTAAAT
Found at i:119084099 original size:13 final size:13
Alignment explanation
Indices: 119084081--119084109 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
119084071 ATTAAAAGAG
119084081 ATAAAAAAATTAA
1 ATAAAAAAATTAA
119084094 AT-AAAAAATTAA
1 ATAAAAAAATTAA
119084106 ATAA
1 ATAA
119084110 TATATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.80
13 3 0.20
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAAAAATTAA
Found at i:119089274 original size:22 final size:22
Alignment explanation
Indices: 119089223--119089274 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
119089213 GGTTTGAAGT
* *
119089223 TGGATGTCGCGACATTGAATGG
1 TGGATGTTGCGACATCGAATGG
* *
119089245 TTGTTGTTGCGACATCG-ATGG
1 TGGATGTTGCGACATCGAATGG
119089266 CTGGATGTT
1 -TGGATGTT
119089275 CCCTTTAAGG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.17, C:0.13, G:0.35, T:0.35
Consensus pattern (22 bp):
TGGATGTTGCGACATCGAATGG
Found at i:119089584 original size:68 final size:68
Alignment explanation
Indices: 119089315--119089565 Score: 297
Period size: 68 Copynumber: 3.7 Consensus size: 68
119089305 CCTTAAAAGA
* * * * * * * * *
119089315 GGTT-TAATGTGTAAGACTATAGCTCGGCTATGACAACCAATAGAATCTGCCAGGATAATAAATA
1 GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGCCAAGACATTAAACA
119089379 TAG
66 TAG
* * * ** * *
119089382 GGTTACAATGTGTAAGATCATAGCTCGATTATGGAAAACAATAGAGTCCGCCAAGACATTAAACA
1 GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGCCAAGACATTAAACA
119089447 TAG
66 TAG
**
119089450 GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACTGATAGAGTCCGCCAAGACATTAAACA
1 GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGCCAAGACATTAAACA
*
119089515 TGG
66 TAG
* * *
119089518 GGTTATAAGGTGTAAGACCATAGCTCAGCTATAGCAACCAATATAGTC
1 GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTC
119089566 TGCAAGGATG
Statistics
Matches: 154, Mismatches: 29, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
67 4 0.03
68 150 0.97
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
GGTTATAAGGTGTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGCCAAGACATTAAACA
TAG
Found at i:119093838 original size:17 final size:14
Alignment explanation
Indices: 119093804--119093833 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
119093794 AATAGATATC
119093804 AATTTATTATTTTT
1 AATTTATTATTTTT
119093818 AATTTATTATTTTT
1 AATTTATTATTTTT
119093832 AA
1 AA
119093834 AAATTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTTATTATTTTT
Found at i:119095377 original size:69 final size:69
Alignment explanation
Indices: 119095256--119095386 Score: 163
Period size: 69 Copynumber: 1.9 Consensus size: 69
119095246 ATATTGAGCA
* * * * *
119095256 AAGCTTGATATTGGTCTTGACCTCGATTGAAGATCGATTTTTAAACGCGTAATCGAGCCTGACAA
1 AAGCTCGATATTGATATTGAACTCGATTGAAGATCGATTTCTAAACGCGTAATCGAGCCTGACAA
119095321 ACTC
66 ACTC
** ** * *
119095325 AAGCTCGATATTGATATTGAACTCGATTGAAGATTTATTTCTAATTGTGTAATTGAGCCTGA
1 AAGCTCGATATTGATATTGAACTCGATTGAAGATCGATTTCTAAACGCGTAATCGAGCCTGA
119095387 ATATTGACAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (69 bp):
AAGCTCGATATTGATATTGAACTCGATTGAAGATCGATTTCTAAACGCGTAATCGAGCCTGACAA
ACTC
Found at i:119098677 original size:3 final size:3
Alignment explanation
Indices: 119098669--119098703 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
119098659 TTATGGAATG
119098669 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
119098704 TTTGGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:119099773 original size:22 final size:20
Alignment explanation
Indices: 119099726--119099773 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
119099716 AAATATTTTT
*
119099726 ATATAAAATATTTAATTATT
1 ATATAAAATATTTAATTATG
*
119099746 ACATAAAATAATTTAAATTATG
1 ATATAAAAT-ATTT-AATTATG
119099768 ATATAA
1 ATATAA
119099774 GCTATTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 8 0.35
21 4 0.17
22 11 0.48
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATAAAATATTTAATTATG
Found at i:119101381 original size:15 final size:14
Alignment explanation
Indices: 119101347--119101381 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
119101337 TTTTAATTCT
119101347 TACTTCATTGAAAA
1 TACTTCATTGAAAA
119101361 -ACTTCATTGAAAA
1 TACTTCATTGAAAA
119101374 GTACTTCA
1 -TACTTCA
119101382 ATTAATTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.68
15 6 0.32
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (14 bp):
TACTTCATTGAAAA
Found at i:119106793 original size:21 final size:20
Alignment explanation
Indices: 119106769--119106814 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
119106759 GGTTAATGGT
119106769 GATTAAGGTAAAATAATTAAA
1 GATTAA-GTAAAATAATTAAA
* *
119106790 GATTAAGTTAATTAATTAAA
1 GATTAAGTAAAATAATTAAA
119106810 G-TTAA
1 GATTAA
119106815 TTAAGTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (20 bp):
GATTAAGTAAAATAATTAAA
Found at i:119106813 original size:14 final size:15
Alignment explanation
Indices: 119106794--119106824 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
119106784 ATTAAAGATT
119106794 AAGTTAATTAA-TTA
1 AAGTTAATTAAGTTA
119106808 AAGTTAATTAAGTTA
1 AAGTTAATTAAGTTA
119106823 AA
1 AA
119106825 CCATGGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (15 bp):
AAGTTAATTAAGTTA
Found at i:119110265 original size:11 final size:11
Alignment explanation
Indices: 119110249--119110273 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119110239 GTATAAGTCA
119110249 TAATCTACAAC
1 TAATCTACAAC
119110260 TAATCTACAAC
1 TAATCTACAAC
119110271 TAA
1 TAA
119110274 CCTAATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATCTACAAC
Found at i:119114657 original size:10 final size:10
Alignment explanation
Indices: 119114612--119114658 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
119114602 AATCTCAATT
*
119114612 TATTTATTTT
1 TATTTATTTA
119114622 TATTTATTTA
1 TATTTATTTA
* *
119114632 T-TTGATTAA
1 TATTTATTTA
*
119114641 AATTTATTTA
1 TATTTATTTA
119114651 TATTTATT
1 TATTTATT
119114659 AAGGATTGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
9 6 0.21
10 23 0.79
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TATTTATTTA
Found at i:119116093 original size:21 final size:21
Alignment explanation
Indices: 119116064--119116142 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 21
119116054 AAATATACTA
119116064 AGTACTGATACCTACATCCAG
1 AGTACTGATACCTACATCCAG
* * *
119116085 AGTATTGATACCTA-GTACCAAAT
1 AGTACTGATACCTACAT-CC--AG
119116108 AGTACTGATACCTACATCCAG
1 AGTACTGATACCTACATCCAG
* *
119116129 AATATTGATACCTA
1 AGTACTGATACCTA
119116143 GTACCAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
20 1 0.02
21 28 0.61
23 16 0.35
24 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.28
Consensus pattern (21 bp):
AGTACTGATACCTACATCCAG
Found at i:119116116 original size:23 final size:22
Alignment explanation
Indices: 119116085--119116152 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
119116075 CTACATCCAG
119116085 AGTATTGATACCTAGTACCAAAT
1 AGTA-TGATACCTAGTACCAAAT
*
119116108 AGTACTGATACCTA-CATCCAGAAT
1 AGTA-TGATACCTAGTA-CCA-AAT
119116132 A-T-TGATACCTAGTACCAAAT
1 AGTATGATACCTAGTACCAAAT
119116152 A
1 A
119116153 TGTCAAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.10
21 12 0.31
22 2 0.05
23 17 0.44
24 4 0.10
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (22 bp):
AGTATGATACCTAGTACCAAAT
Found at i:119116127 original size:44 final size:44
Alignment explanation
Indices: 119116064--119116152 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
119116054 AAATATACTA
*
119116064 AGTACTGATACCTACATCCAGAGTATTGATACCTAGTACCAAAT
1 AGTACTGATACCTACATCCAGAATATTGATACCTAGTACCAAAT
119116108 AGTACTGATACCTACATCCAGAATATTGATACCTAGTACCAAAT
1 AGTACTGATACCTACATCCAGAATATTGATACCTAGTACCAAAT
119116152 A
1 A
119116153 TGTCAAATAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.27
Consensus pattern (44 bp):
AGTACTGATACCTACATCCAGAATATTGATACCTAGTACCAAAT
Found at i:119118301 original size:27 final size:27
Alignment explanation
Indices: 119118271--119118350 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
119118261 ATTTACTTTG
119118271 TTAAGTTGATTTTATTGGTGAAATCGA
1 TTAAGTTGATTTTATTGGTGAAATCGA
* * *
119118298 TTAA---GA--CT-TTGGTTAAAAT-AA
1 TTAAGTTGATTTTATTGG-TGAAATCGA
119118319 TTAAGTTGATTTTATTGGTGAAATCGA
1 TTAAGTTGATTTTATTGGTGAAATCGA
119118346 TTAAG
1 TTAAG
119118351 ACTTTACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
21 9 0.23
22 6 0.15
24 4 0.10
26 6 0.15
27 14 0.36
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.42
Consensus pattern (27 bp):
TTAAGTTGATTTTATTGGTGAAATCGA
Found at i:119118328 original size:48 final size:48
Alignment explanation
Indices: 119118271--119118370 Score: 182
Period size: 48 Copynumber: 2.1 Consensus size: 48
119118261 ATTTACTTTG
**
119118271 TTAAGTTGATTTTATTGGTGAAATCGATTAAGACTTTGGTTAAAATAA
1 TTAAGTTGATTTTATTGGTGAAATCGATTAAGACTTTACTTAAAATAA
119118319 TTAAGTTGATTTTATTGGTGAAATCGATTAAGACTTTACTTAAAATAA
1 TTAAGTTGATTTTATTGGTGAAATCGATTAAGACTTTACTTAAAATAA
119118367 TTAA
1 TTAA
119118371 AATTGATCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (48 bp):
TTAAGTTGATTTTATTGGTGAAATCGATTAAGACTTTACTTAAAATAA
Found at i:119124832 original size:31 final size:31
Alignment explanation
Indices: 119124794--119124855 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
119124784 CAACTTTGAG
119124794 GGTGGTCTTACACAAAAATACTAATATTCAA
1 GGTGGTCTTACACAAAAATACTAATATTCAA
119124825 GGTGGTCTTACACAAAAATACTAATATTCAA
1 GGTGGTCTTACACAAAAATACTAATATTCAA
119124856 ACTTCAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (31 bp):
GGTGGTCTTACACAAAAATACTAATATTCAA
Found at i:119132933 original size:72 final size:72
Alignment explanation
Indices: 119132849--119132992 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
119132839 AGAAGGCAAA
119132849 AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATAT
1 AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATAT
119132914 CATTAAT
66 CATTAAT
119132921 AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATAT
1 AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATAT
119132986 CATTAAT
66 CATTAAT
119132993 TTAGAATCTG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (72 bp):
AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATAT
CATTAAT
Found at i:119133657 original size:17 final size:17
Alignment explanation
Indices: 119133623--119133659 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
119133613 AGTTTTTATC
119133623 AAATCTTTAATTTATAA
1 AAATCTTTAATTTATAA
*
119133640 AAAT-TTTAATTTATTA
1 AAATCTTTAATTTATAA
119133656 AAAT
1 AAAT
119133660 TATTGGATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATCTTTAATTTATAA
Found at i:119144205 original size:13 final size:13
Alignment explanation
Indices: 119144187--119144211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119144177 CCACCGTGCG
119144187 CGGTGGCCGGCGA
1 CGGTGGCCGGCGA
119144200 CGGTGGCCGGCG
1 CGGTGGCCGGCG
119144212 GCTGCAGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.56, T:0.08
Consensus pattern (13 bp):
CGGTGGCCGGCGA
Found at i:119145253 original size:19 final size:19
Alignment explanation
Indices: 119145199--119145253 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
119145189 TTTTTAATAC
119145199 TATA-TTATGTATATATTA
1 TATATTTATGTATATATTA
* * *
119145217 TATATATATATATCTATTA
1 TATATTTATGTATATATTA
*
119145236 TATTTTTATGTATATATT
1 TATATTTATGTATATATT
119145254 TTTAATATCA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 4 0.14
19 25 0.86
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
TATATTTATGTATATATTA
Found at i:119145279 original size:24 final size:22
Alignment explanation
Indices: 119145247--119145292 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
119145237 ATTTTTATGT
119145247 ATATATTTTTAATATCACATTATC
1 ATATATTTTT-ATAT-ACATTATC
* *
119145271 ATATGTTTTTTTATACATTATC
1 ATATATTTTTATATACATTATC
119145293 CCATGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (22 bp):
ATATATTTTTATATACATTATC
Found at i:119145434 original size:3 final size:3
Alignment explanation
Indices: 119145428--119145497 Score: 90
Period size: 3 Copynumber: 23.0 Consensus size: 3
119145418 TAAATTCATA
*
119145428 TAT TAT TAT CAT TAT T-T CTACGT TAT -AT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TA--T TAT TAT TAT TAT TAT TAT TAT TAT
119145474 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
119145498 CATTGTCATT
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
2 3 0.05
3 54 0.90
5 2 0.03
6 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:119157840 original size:44 final size:44
Alignment explanation
Indices: 119157790--119158407 Score: 914
Period size: 44 Copynumber: 14.3 Consensus size: 44
119157780 TTCCTTGAAA
* *
119157790 AAGATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
119157834 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
119157878 AAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
119157918 AAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCA-ATCA
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
119157961 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
119158005 AAGATAACAGATTTGGTGTCTCTGTAGCGGCGGAGAACAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
119158049 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC-GATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
119158092 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* * * *
119158136 -A-A-AA-TGATTTGGCATCTCTGTAGCGACGGAGAACAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
** *
119158176 AAGATAACAGATTTGGCGTCTCTGTAGTAGCAGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* * *
119158220 AAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAACAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
119158264 AAGATAACAGATTTGGCGTCTCTGTAGCAGCAGAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
119158308 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCA
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* ***
119158352 AAGATAACAGATTTGGAGTCTCTGTAGCGGTAAAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
119158396 AAAATAACAGAT
1 AAGATAACAGAT
119158408 CGGTGTTCCT
Statistics
Matches: 523, Mismatches: 41, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
40 72 0.14
41 3 0.01
42 2 0.00
43 84 0.16
44 362 0.69
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (44 bp):
AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
Found at i:119158189 original size:215 final size:219
Alignment explanation
Indices: 119157790--119158380 Score: 932
Period size: 215 Copynumber: 2.7 Consensus size: 219
119157780 TTCCTTGAAA
* * *
119157790 AAGATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCT
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAGATTTGGCGTCT
*
119157855 CTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGAT
66 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGAT
* * *
119157916 CGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAATCAAAGATAGCAGATTTGGCGTC
131 CGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAACAATCAAAGATAACAGATTTGGCGTC
*
119157981 TCTGTAGCGGCAGAGAGCAGATCG
196 TCTGTAGCAGCAGAGAGCAGATCG
*
119158005 AAGATAACAGATTTGGTGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAGATTTGGCGTCT
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAGATTTGGCGTCT
*
119158070 CTGTAGCGGCGGAGAGC-GATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGAT
66 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGAT
* *
119158134 CG-A-A-AA-TGATTTGGCATCTCTGTAGCGACGGAGAACAGATCGAAGATAACAGATTTGGCGT
131 CGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAACA-ATCAAAGATAACAGATTTGGCGT
*
119158195 CTCTGTAGTAGCAGAGAGCAGATCG
195 CTCTGTAGCAGCAGAGAGCAGATCG
* *
119158220 AAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAACAGATCGAAGATAACAGATTTGGCGTCT
1 AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAGATTTGGCGTCT
* *
119158285 CTGTAGCAGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGAT
66 CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGAT
*
119158350 CAAAGATAACAGATTTGG-AGTCTCTGTAGCG
131 CGAAGATAACAGATTTGGCA-TCTCTGTAGCG
119158381 GTAAAGAGCA
Statistics
Matches: 344, Mismatches: 21, Indels: 17
0.90 0.05 0.04
Matches are distributed among these distances:
214 38 0.11
215 201 0.58
216 48 0.14
217 2 0.01
218 34 0.10
219 3 0.01
220 18 0.05
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (219 bp):
AAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAGATTTGGCGTCT
CTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGAT
CGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAACAATCAAAGATAACAGATTTGGCGTC
TCTGTAGCAGCAGAGAGCAGATCG
Found at i:119159857 original size:25 final size:25
Alignment explanation
Indices: 119159827--119159880 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
119159817 ATACACTCTT
*
119159827 TTATTTTCTTTTATTATA-AATATTA
1 TTATTTTATTTTATT-TACAATATTA
* *
119159852 TTATTTTATTTTCTTTACATTATTA
1 TTATTTTATTTTATTTACAATATTA
119159877 TTAT
1 TTAT
119159881 ATTGTATCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (25 bp):
TTATTTTATTTTATTTACAATATTA
Found at i:119160207 original size:23 final size:22
Alignment explanation
Indices: 119160181--119160253 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 22
119160171 AATGTGTATG
119160181 TATTATATATATTTTTA-ATACTA
1 TATTAT-TATATTTTTATATA-TA
*
119160204 TATTATGTATATTATATATATATA
1 TATTAT-TATATT-TTTATATATA
*
119160228 TATTATTATATTTTTATGTATA
1 TATTATTATATTTTTATATATA
119160250 TATT
1 TATT
119160254 TTTAATATCA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
22 12 0.27
23 18 0.41
24 11 0.25
25 3 0.07
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (22 bp):
TATTATTATATTTTTATATATA
Found at i:119160223 original size:18 final size:18
Alignment explanation
Indices: 119160202--119160250 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
119160192 TTTTTAATAC
119160202 TATATTATGTATATTATA
1 TATATTATGTATATTATA
*
119160220 TATA-TATATATTATTATA
1 TATATTATGTA-TATTATA
*
119160238 T-TTTTATGTATAT
1 TATATTATGTATAT
119160251 ATTTTTAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (18 bp):
TATATTATGTATATTATA
Found at i:119160462 original size:3 final size:3
Alignment explanation
Indices: 119160454--119160502 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
119160444 TTCTACGTTA
* *
119160454 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
119160502 T
1 T
119160503 GCCATTTTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:119167093 original size:15 final size:15
Alignment explanation
Indices: 119167073--119167102 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119167063 ATATTGTGTG
*
119167073 TGCATTGTTGTTGAA
1 TGCATTGTTGGTGAA
119167088 TGCATTGTTGGTGAA
1 TGCATTGTTGGTGAA
119167103 GTTTAGTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.07, G:0.30, T:0.43
Consensus pattern (15 bp):
TGCATTGTTGGTGAA
Done.