Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 410 of 444
Found at i:119167357 original size:13 final size:13
Alignment explanation
Indices: 119167339--119167378 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
119167329 AGTTGAATCG
119167339 AATACTCACCCTA
1 AATACTCACCCTA
119167352 AATACTCACCCTA
1 AATACTCACCCTA
119167365 AATACTCACCCTA
1 AATACTCACCCTA
119167378 A
1 A
119167379 CTATAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (13 bp):
AATACTCACCCTA
Found at i:119167402 original size:4 final size:4
Alignment explanation
Indices: 119167395--119167445 Score: 102
Period size: 4 Copynumber: 12.8 Consensus size: 4
119167385 ATATAATAAA
119167395 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
119167443 TAT
1 TAT
119167446 AAAAACAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:119168474 original size:55 final size:55
Alignment explanation
Indices: 119168385--119168492 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 55
119168375 AAGTGTTATG
* * * * *
119168385 TAACAGTCGATTTAAATATATAAACAATCGATTCAAAAGAAGTAATATTCCAATA
1 TAACAATCGATTTAAACATATAAAAAATAGATTCAAAAGAAGCAATATTCCAATA
* *
119168440 TAACAATCGATTTAAACATATAAAAAATATATTCAAAAGAAGCAGTATTCCAA
1 TAACAATCGATTTAAACATATAAAAAATAGATTCAAAAGAAGCAATATTCCAA
119168493 CAAGTAAGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (55 bp):
TAACAATCGATTTAAACATATAAAAAATAGATTCAAAAGAAGCAATATTCCAATA
Found at i:119175187 original size:15 final size:15
Alignment explanation
Indices: 119175152--119175181 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119175142 TTTAATCTTT
*
119175152 TATAAATTATAAAGA
1 TATAAATTATAAAAA
119175167 TATAAATTATAAAAA
1 TATAAATTATAAAAA
119175182 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
TATAAATTATAAAAA
Found at i:119176082 original size:213 final size:212
Alignment explanation
Indices: 119175845--119176460 Score: 912
Period size: 213 Copynumber: 2.9 Consensus size: 212
119175835 TTTATTTATT
* *
119175845 TTTTTACTATATTAGTAACATTTTTATTTATGTAAAATCATA-TTTTAATTTAACTATATTTAGT
1 TTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCATATTTTTAATTT-A-TATATTTAGT
119175909 AATTATTTTACATGTTTTTATTGTGAAAAAATAAGTATCATATGCATTTTCATATTTTCATTTTC
64 AATTATTTTACATGTTTTTATTGTG-AAAAATAAGTATCATATGCATTTTCATATTTTCATTTTC
119175974 ATTTAACAAACATGATTTTTTCAATTTTTAAAATTAAAGAATCAAAATTATTTTTTAAAAATAAA
128 ATTTAACAAACATGATTTTTT-AATTTTTAAAATTAAAGAATCAAAATTATTTTTTAAAAATAAA
119176039 AAT-TAA-TTAATTTAATTTA
192 AATATAATTTAATTTAATTTA
* *
119176058 TTTTTATTATATTAGTAACATTTTTATTTATCTAAAAT-AAATTTTTAATTTA-ATATTTAGTAG
1 TTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCATATTTTTAATTTATATATTTAGTAA
** *
119176121 TTAGCTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTGATATTTTCATTTTCATT
66 TTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTCATATTTTCATTTTCATT
** *
119176186 TAACAAACATGATTTTTTTAATTTTTAAAATTAAAGAATCAAAAACATTTTTTAAAAACAAAAAT
131 TAACAAACATGA-TTTTTTAATTTTTAAAATTAAAGAATCAAAATTATTTTTTAAAAATAAAAAT
*
119176251 AAATAATTTTATTTAATTTA
195 --ATAATTTAATTTAATTTA
119176271 TTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCATATTTTTAATTTGATTATATTTAGT
1 TTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCATATTTTTAATTT-A-TATATTTAGT
*
119176336 AATTATTTTATATGTTTTTATTGTGAAAAATAAGTATC--AT--ATTTTC--ATTTTCATTTTCA
64 AATTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTCATATTTTCATTTTCA
* * * *
119176395 TTTAACAAACATAATATTTTATAATTTTTTAAATTAAAGAATAAAAATTATTTTTTTAAAATAAA
129 TTTAACAAACATGAT-TTTT-TAATTTTTAAAATTAAAGAATCAAAATTATTTTTTAAAAATAAA
119176460 A
192 A
119176461 TTTTTTTTTT
Statistics
Matches: 367, Mismatches: 24, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
209 96 0.26
210 38 0.10
211 30 0.08
212 45 0.12
213 100 0.27
214 12 0.03
215 3 0.01
217 43 0.12
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (212 bp):
TTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCATATTTTTAATTTATATATTTAGTAA
TTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTCATATTTTCATTTTCATT
TAACAAACATGATTTTTTAATTTTTAAAATTAAAGAATCAAAATTATTTTTTAAAAATAAAAATA
TAATTTAATTTAATTTA
Found at i:119176457 original size:20 final size:21
Alignment explanation
Indices: 119176434--119176476 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
119176424 TAAATTAAAG
119176434 AATAAAAATTATTTTTTT-AA
1 AATAAAAATTATTTTTTTGAA
* *
119176454 AATAAAATTTTTTTTTTTGAA
1 AATAAAAATTATTTTTTTGAA
119176475 AA
1 AA
119176477 ACAAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AATAAAAATTATTTTTTTGAA
Found at i:119183019 original size:24 final size:24
Alignment explanation
Indices: 119182987--119183041 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
119182977 TTAAATATGA
*
119182987 TAATA-AATGATATTTA-AATAATT
1 TAATATAATGATATATAGAAT-ATT
119183010 TAATATAATGATATATAGAATATT
1 TAATATAATGATATATAGAATATT
119183034 TAA-ATAAT
1 TAATATAAT
119183042 TTAACATAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.34
24 16 0.55
25 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (24 bp):
TAATATAATGATATATAGAATATT
Found at i:119183033 original size:33 final size:33
Alignment explanation
Indices: 119182996--119183065 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
119182986 ATAATAAATG
* * *
119182996 ATATTTAAATAATTTAATATAATGATATATAGA
1 ATATTTAAATAATTTAACATAATGATACATAAA
*
119183029 ATATTTAAATAATTTAACATAGTGATACATAAA
1 ATATTTAAATAATTTAACATAATGATACATAAA
119183062 ATAT
1 ATAT
119183066 AAAATTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (33 bp):
ATATTTAAATAATTTAACATAATGATACATAAA
Found at i:119184663 original size:19 final size:19
Alignment explanation
Indices: 119184626--119184681 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
119184616 AGTAGCACTC
* *
119184626 ATATTCATATATA-TATAT
1 ATATTCATCTAAAGTATAT
119184644 AATATTCGATCTAAAGTATAT
1 -ATATTC-ATCTAAAGTATAT
* *
119184665 ATCTTCCTCTAAAGTAT
1 ATATTCATCTAAAGTAT
119184682 CGCAAAACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.52
20 10 0.32
21 5 0.16
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.43
Consensus pattern (19 bp):
ATATTCATCTAAAGTATAT
Found at i:119185839 original size:18 final size:18
Alignment explanation
Indices: 119185816--119185861 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
119185806 CCTTGAAACA
119185816 CCCACAAATTTCTTTGTT
1 CCCACAAATTTCTTTGTT
119185834 CCCACAAATTTCTTTGTT
1 CCCACAAATTTCTTTGTT
*
119185852 TCCACAAATT
1 CCCACAAATT
119185862 CCAATAGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.41
Consensus pattern (18 bp):
CCCACAAATTTCTTTGTT
Found at i:119188226 original size:32 final size:32
Alignment explanation
Indices: 119188175--119188248 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
119188165 AACGATTTAA
* * *
119188175 AAATAGAT-TATATATATATAAAATTTTAAAAT
1 AAATA-ATATATATAAATATAAAAGTGTAAAAT
*
119188207 AGATAATATATATAAATATAAAAGTGTAAAAT
1 AAATAATATATATAAATATAAAAGTGTAAAAT
*
119188239 AAATATTATA
1 AAATAATATA
119188249 AAGAATATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 2 0.06
32 33 0.94
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (32 bp):
AAATAATATATATAAATATAAAAGTGTAAAAT
Found at i:119188325 original size:24 final size:24
Alignment explanation
Indices: 119188262--119188348 Score: 83
Period size: 24 Copynumber: 3.7 Consensus size: 24
119188252 AATATTAAAG
* *
119188262 TAAAACAATTTAAAATAAATGA-A
1 TAAATCAATTTAAAATAAGTGATA
*
119188285 -AAGATCAGTTTAAAATAAG-GCATA
1 TAA-ATCAATTTAAAATAAGTG-ATA
119188309 TGAAAT-AATTTAAAATAAGTGATA
1 T-AAATCAATTTAAAATAAGTGATA
*
119188333 TAAGTCAATTTAAAAT
1 TAAATCAATTTAAAAT
119188349 TTATATACTG
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
22 3 0.06
23 17 0.33
24 27 0.52
25 3 0.06
26 2 0.04
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (24 bp):
TAAATCAATTTAAAATAAGTGATA
Found at i:119188486 original size:25 final size:25
Alignment explanation
Indices: 119188439--119188486 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
119188429 ATATATATAT
**
119188439 ATATATATATAATATTTGAAAAGCA
1 ATATATATATAATATGGGAAAAGCA
* *
119188464 ATATGTATATAATATGGGGAAAG
1 ATATATATATAATATGGGAAAAG
119188487 AATCTAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.17, T:0.33
Consensus pattern (25 bp):
ATATATATATAATATGGGAAAAGCA
Found at i:119190123 original size:44 final size:44
Alignment explanation
Indices: 119190073--119190910 Score: 512
Period size: 44 Copynumber: 18.6 Consensus size: 44
119190063 CTTTGATCCA
* * * * *
119190073 CTCCACTGCAACTTCAGAGAGATAATAATCGTAACTCCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
* * * * * *** *
119190117 CCCCACTGCAATTTTAGGGGGATAAG-GTCTGTGGTTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TGTAACTTCAACCTG
119190161 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
** * *** * *
119190205 CTCCACTAAAACTTCAGGGAGATAAGATTTGTGGTTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
* * * **
119190249 CTCTACTGCAACTTCAGAGAGATAAGATTTGTTATA-TTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-TA-ACTTCAACCTG
* *
119190294 CTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
* * ** *
119190338 CTCCACTGCAACTTCAGAGAGATAAGATTCAACATGATAGA-TTTGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAG-----ACTTG-TA-ACTTCAACCTG
* * *
119190388 AC-CCACTGCAACTTCAGAGATATAAGACTTGTAACTTGTAGCTTTAATCTG
1 -CTCCACTGCAACTTCAGGGAGATAAGACTTGTAAC-T-T--C---AACCTG
* * * * **
119190439 TTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTG
* *
119190484 CCCCACTGCAATTTCAGGGAGATAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
* * * * *
119190528 CTCTACTGCAACTTCAGGGAGATAAG-GTT-T-GCTAT-GATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT-TCAACCTG
* * * * * * *
119190569 CTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTTCGATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAA-CTTCAACCTG
* *
119190614 CTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
*** * *
119190658 CTCCACTGCAACTTCAGGGAGATAAGACTTGTGGTTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
* * ** **
119190702 CTCTACTGCAACTTCAGGGAGATAAGATTTGCCA-TGGT-AGATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT--TCA-ACCTG
* * * * * * * * * **
119190747 ATCTAACCTGCTGCAATTTCACAGG-TATAGGATTTATAGCTTTAATTTG
1 --CT--CC-ACTGCAACTTCA-GGGAGATAAGACTTGTAACTTCAACCTG
* * ** **
119190796 CTCTACTGCAACTTCAGAGAGATAAGA-TTCGCTATTTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTT-G-TAACTTCAACCTG
*
119190841 CTCCGCTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
119190885 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
119190911 GTTTGTGATT
Statistics
Matches: 617, Mismatches: 133, Indels: 88
0.74 0.16 0.11
Matches are distributed among these distances:
41 31 0.05
42 4 0.01
43 9 0.01
44 316 0.51
45 149 0.24
46 3 0.00
47 4 0.01
48 1 0.00
49 11 0.02
50 50 0.08
51 36 0.06
52 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
Found at i:119190346 original size:89 final size:89
Alignment explanation
Indices: 119190152--119190916 Score: 617
Period size: 89 Copynumber: 8.5 Consensus size: 89
119190142 GGTCTGTGGT
* ** **
119190152 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-ACTTCAACCTGCTCCACTAAAA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATA-TTCAGTCTGCTCCACTGCAA
* **
119190216 CTTCAGGGAGATAAGATTTGTGGT-
65 CTTCAGGGAGATAAGACTTGTAATC
* * *
119190240 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATATTCAGTCTGCTCCACTGCAA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGCTCCACTGCAA
119190305 CTTCAGGGAGATAAGACTTGT-ATC
65 CTTCAGGGAGATAAGACTTGTAATC
* * * * *
119190329 TTCAACCTACTCCACTGCAACTTCAGAGAGATAAGATTCAACATGATAGATT-TGATCTGAC-CC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TATATTCAG-TCTG-CTCC
* *
119190392 ACTGCAACTTCAGAGATATAAGACTTGTAACTTGTAGC
58 ACTGCAACTTCAGGGAGATAAGACTTGTAA----T--C
* * * * *
119190430 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCCCCACTGCAA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGCTCCACTGCAA
*
119190495 TTTCAGGGAGATAAGACTTGTAA-C
65 CTTCAGGGAGATAAGACTTGTAATC
* * * * * *
119190519 TTCAACCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTG-CTA-TGA-TCTGCTCTACTGCAAC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGCTCCACTGCAAC
* * *
119190581 TTCAGAGAGATAAGATTTGTAATT
66 TTCAGGGAGATAAGACTTGTAATC
* * * **
119190605 TTCGATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTA-ACTTCAACCTGCTCCACTGCAA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATA-TTCAGTCTGCTCCACTGCAA
**
119190669 CTTCAGGGAGATAAGACTTGTGGT-
65 CTTCAGGGAGATAAGACTTGTAATC
* * * ** * *
119190693 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATGGT-AGATTTGATCTAACCTG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAG-TCTG--CT--CC-A
* * * * *
119190757 CTGCAATTTCACAGG-TATAGGA-TT-TATAGC
59 CTGCAACTTCA-GGGAGATAAGACTTGTA-ATC
* * * * * * *
119190787 TTTAATTTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAGTCTGCTCCACTGCAA
119190852 CTTCAGGGAGATAAGACTTGTAA-C
65 CTTCAGGGAGATAAGACTTGTAATC
* *
119190876 TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
119190917 GATTTGTAGC
Statistics
Matches: 540, Mismatches: 98, Indels: 78
0.75 0.14 0.11
Matches are distributed among these distances:
85 33 0.06
86 37 0.07
87 1 0.00
88 78 0.14
89 194 0.36
90 6 0.01
91 4 0.01
92 3 0.01
93 5 0.01
94 98 0.18
95 7 0.01
96 39 0.07
97 1 0.00
99 1 0.00
101 33 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (89 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAGTCTGCTCCACTGCAAC
TTCAGGGAGATAAGACTTGTAATC
Found at i:119190464 original size:51 final size:50
Alignment explanation
Indices: 119190339--119190467 Score: 152
Period size: 51 Copynumber: 2.6 Consensus size: 50
119190329 TTCAACCTAC
* *
119190339 TCCACTGCAACTTCAGAGAGATAAGATTCAACATGATAGATTTGATCTGA
1 TCCACTGCAACTTCAGAGAAATAAGATTCAACATGATAGATTTAATCTGA
* * * * * *
119190389 CCCACTGCAACTTCAGAGATATAAGACTTGTAACTTG-TAGCTTTAATCTGT
1 TCCACTGCAACTTCAGAGAAATAAGA-TT-CAACATGATAGATTTAATCTGA
*
119190440 TCCACTGCAACTTCAGGGAAATAAGATT
1 TCCACTGCAACTTCAGAGAAATAAGATT
119190468 TGCTATCTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 26 0.39
51 36 0.54
52 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (50 bp):
TCCACTGCAACTTCAGAGAAATAAGATTCAACATGATAGATTTAATCTGA
Found at i:119190667 original size:130 final size:133
Alignment explanation
Indices: 119190075--119190733 Score: 482
Period size: 133 Copynumber: 4.9 Consensus size: 133
119190065 TTGATCCACT
* * * * * * * *
119190075 CCACTGCAACTTC-AGAGAGATAATAATCGTAACTCCAACCTGCCCCACTGCAATTTTAGGGGGA
1 CCACTGCAACTTCAAG-GAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
119190139 TAAG-GTCTGTGG-TTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAA
65 TAAGACT-TGTGGCTAT-AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAG
* * *
119190201 CCTGCT
128 TCTACC
** * * *** * * * *
119190207 CCACTAAAACTTCAGGGAGATAAGATTTGTGGTTTTAATCTGCTCTACTGCAACTTCAGAGAGAT
1 CCACTGCAACTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
* ** * * * **
119190272 AAGATTTGT-TATATTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAAC
66 AAGACTTGTGGCTA-T-AATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGT
*
119190335 CTACT
129 CTACC
* ** *
119190340 CCACTGCAACTTC-AGAGAGATAAGATTCAACATGATAGA-TTTGATCTGAC-CCACTGCAACTT
1 CCACTGCAACTTCAAG-GAGATAAG-----ACTTG-TA-ACTTCAACCTG-CTCCACTGCAACTT
* * * * * *
119190402 CAGAGATATAAGACTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
57 CAGGGAGATAAGACTTG-----TG--GCTATAATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
*
119190467 TTGCTATCTTCAGTCTGCC
115 TTGCTATCTTCAGTCTACC
* * *
119190486 CCACTGCAATTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
119190551 AAG-GTT-T-GCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG-TAATTTTC-GAT
66 AAGACTTGTGGCTATAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCT-ATCTTCAG-T
*
119190611 CTACT
129 CTACC
*
119190616 CCACTGCAACTTCAAGGAGATAAGATTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
* *
119190681 AAGACTTGTGGTTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGC
66 AAGACTTGTGGCTATAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGC
119190734 CATGGTAGAT
Statistics
Matches: 422, Mismatches: 74, Indels: 60
0.76 0.13 0.11
Matches are distributed among these distances:
129 2 0.00
130 109 0.26
131 2 0.00
132 54 0.13
133 111 0.26
138 3 0.01
139 39 0.09
140 30 0.07
141 4 0.01
144 1 0.00
145 33 0.08
146 32 0.08
147 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (133 bp):
CCACTGCAACTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
AAGACTTGTGGCTATAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCT
ACC
Found at i:119190818 original size:227 final size:229
Alignment explanation
Indices: 119190567--119191115 Score: 640
Period size: 227 Copynumber: 2.3 Consensus size: 229
119190557 TGCTATGATC
*
119190567 TGCTCTACTGCAACTTCAGAGAGATAAGATTTG-TAATTTTC-GATCTACTCCACTGCAACTTCA
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTCGCT-ATTTTCAG-TCTACTCCACTGCAACTTCA
*
119190630 AGGAGATAAGATTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTG-GT-
64 AGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGTGTA
* * *
119190693 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATGGTAGATTTGATCTAACCTGC
129 TTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATGGTAGATTTGATCTAACCTGC
119190758 TGCAATTTCACAGGTATAGGATTTATAGCTTTAATT
194 TGCAATTTCACAGGTATAGGATTTATAGCTTTAATT
* * *
119190794 TGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTACTCCACTGCAACTTCAAG
**
119190859 GAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGT
66 GAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTG---TGT
* * * * * **
119190924 AGCTTCAATCTGCCCCACTGTAATTTCAGGGGGATAAGATTTGCTATGGTAGATTTGATTTGGCC
128 A--TTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATGGTAGATTTGATCTAACC
* * * *
119190989 TACTGTAACTTCAGAGGTATAGGACTTGTAACTCATAGCTTTAATT
191 TGCTGCAATTTCACAGGTATAGGA--T-T---T-ATAGCTTTAATT
* * * * * * * * **
119191035 TGTTCCACTGCAACATCA-AGGAAATAAGATTCACCAATATTCAGTCTGCTCCACTATAACTTCA
1 TGCTCTACTGCAACTTCAGA-GAGATAAGATTC-GCTATTTTCAGTCTACTCCACTGCAACTTCA
119191099 AGGAGATAAGACTTGTA
64 AGGAGATAAGACTTGTA
119191116 GATTCACCGA
Statistics
Matches: 272, Mismatches: 32, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
227 113 0.42
228 2 0.01
231 2 0.01
234 72 0.26
236 1 0.00
237 1 0.00
240 2 0.01
241 38 0.14
242 41 0.15
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (229 bp):
TGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTACTCCACTGCAACTTCAAG
GAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGTGTATT
CAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATGGTAGATTTGATCTAACCTGCTG
CAATTTCACAGGTATAGGATTTATAGCTTTAATT
Found at i:119190952 original size:51 final size:51
Alignment explanation
Indices: 119190869--119190966 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
119190859 GAGATAAGAC
* *
119190869 TTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGAT
1 TTGTAACTTCAACCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTGAT
* * * * *
119190920 TTGTAGCTTCAATCTGCCCCACTGTAATTTCAGGGGGATAAGATTTG
1 TTGTAACTTCAACCTGCCCCACTGCAACTTCAGGGAGATAAGATTTG
119190967 CTATGGTAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (51 bp):
TTGTAACTTCAACCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTGAT
Found at i:119196479 original size:27 final size:26
Alignment explanation
Indices: 119196449--119196505 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
119196439 ATTAACTATG
* *
119196449 TATAGAACGATTTAAAAATAGATTATA
1 TATAGAA-AATTTAAAAATAGATAATA
* *
119196476 TATATAAAATTTTAAAATAGATAATA
1 TATAGAAAATTTAAAAATAGATAATA
119196502 TATA
1 TATA
119196506 TAAATATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (26 bp):
TATAGAAAATTTAAAAATAGATAATA
Found at i:119196487 original size:26 final size:26
Alignment explanation
Indices: 119196458--119196509 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
119196448 GTATAGAACG
*
119196458 ATTTAAAAATAGATTATATATATAAA
1 ATTTAAAAATAGATAATATATATAAA
*
119196484 ATTTTAAAATAGATAATATATATAAA
1 ATTTAAAAATAGATAATATATATAAA
119196510 TATAAAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (26 bp):
ATTTAAAAATAGATAATATATATAAA
Found at i:119196515 original size:24 final size:26
Alignment explanation
Indices: 119196463--119196516 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
119196453 GAACGATTTA
* *
119196463 AAAATAGATTATATATATAAAATTTT
1 AAAATAGATAATATATATAAAATTAT
119196489 AAAATAGATAATATATAT-AAA-TAT
1 AAAATAGATAATATATATAAAATTAT
119196513 AAAA
1 AAAA
119196517 GTGTAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.23
25 3 0.12
26 17 0.65
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAATAGATAATATATATAAAATTAT
Found at i:119196516 original size:32 final size:32
Alignment explanation
Indices: 119196472--119196535 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
119196462 AAAAATAGAT
* * * *
119196472 TATATATATAAAATTTTAAAATAGATAATATA
1 TATAAATATAAAAGTGTAAAATAAATAATATA
*
119196504 TATAAATATAAAAGTGTAAAATAAATATTATA
1 TATAAATATAAAAGTGTAAAATAAATAATATA
119196536 AAGAATATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.38
Consensus pattern (32 bp):
TATAAATATAAAAGTGTAAAATAAATAATATA
Found at i:119196617 original size:24 final size:24
Alignment explanation
Indices: 119196577--119196632 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
119196567 ATGAAAAGAG
*
119196577 TTTAAAATAAGGCATATGAAAT-AA
1 TTTAAAATAAGGAATAT-AAATCAA
* *
119196601 TTTAAAATAAGTAATATAAGTCAA
1 TTTAAAATAAGGAATATAAATCAA
119196625 TTTAAAAT
1 TTTAAAAT
119196633 TTATATACTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.34
Consensus pattern (24 bp):
TTTAAAATAAGGAATATAAATCAA
Found at i:119196867 original size:48 final size:45
Alignment explanation
Indices: 119196815--119196906 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
119196805 TATATATATA
* *
119196815 TATATAAGGCAATTTAAAATTCATAATAA-AACAATTTTGAATAAACAG
1 TATATAAAGCAAGTTAAAA-T-A-AATAATAACAA-TTTGAATAAACAG
* *
119196863 TATATAAAGCAAGTTAGAATAAATAATAATAATTTGAATAAACA
1 TATATAAAGCAAGTTAAAATAAATAATAACAATTTGAATAAACA
119196907 ATGCATTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
45 17 0.44
46 5 0.13
47 1 0.03
48 16 0.41
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (45 bp):
TATATAAAGCAAGTTAAAATAAATAATAACAATTTGAATAAACAG
Found at i:119197880 original size:23 final size:22
Alignment explanation
Indices: 119197843--119197889 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
119197833 ACAAGGCTTG
*
119197843 TTTTCTTTTTGTTTTT-TTGTGT
1 TTTTCTTTTTCTTTTTGTT-TGT
119197865 TTTTCGTTTTTCTTTTTGTTTGT
1 TTTTC-TTTTTCTTTTTGTTTGT
119197888 TT
1 TT
119197890 CTCTGTTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 5 0.23
23 15 0.68
24 2 0.09
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (22 bp):
TTTTCTTTTTCTTTTTGTTTGT
Found at i:119199949 original size:38 final size:39
Alignment explanation
Indices: 119199901--119199990 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 39
119199891 ATCTCTGTCT
* * * *
119199901 AACCCAACACACCATGTA-GGGATAAGATCGACCCACCC
1 AACCCTACACACCAAGTAGGGGATAAAATCAACCCACCC
* *
119199939 AGCCCTACACACCAAGTATGGGGATAAAATCAACCCATCC
1 AACCCTACACACCAAGTA-GGGGATAAAATCAACCCACCC
*
119199979 AACCTTACACAC
1 AACCCTACACAC
119199991 AAAGAGGTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 15 0.36
40 27 0.64
ACGTcount: A:0.38, C:0.36, G:0.13, T:0.13
Consensus pattern (39 bp):
AACCCTACACACCAAGTAGGGGATAAAATCAACCCACCC
Found at i:119211415 original size:5 final size:5
Alignment explanation
Indices: 119211405--119211432 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
119211395 TCAAAGCATA
119211405 GGATG GGATG GGATG GGATG GGATG GGA
1 GGATG GGATG GGATG GGATG GGATG GGA
119211433 GAAAATGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.61, T:0.18
Consensus pattern (5 bp):
GGATG
Found at i:119211989 original size:22 final size:20
Alignment explanation
Indices: 119211943--119211989 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
119211933 TCAAAATTTC
119211943 TTAAA-AAAATTTAAATAAT
1 TTAAATAAAATTTAAATAAT
**
119211962 CAAAATAAAAGTTTAAATTAAT
1 TTAAATAAAA-TTTAAA-TAAT
119211984 TTAAAT
1 TTAAAT
119211990 TATATTTCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.14
20 4 0.19
21 6 0.29
22 8 0.38
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TTAAATAAAATTTAAATAAT
Found at i:119212441 original size:13 final size:13
Alignment explanation
Indices: 119212419--119212451 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
119212409 TGTTGAATTC
119212419 AAAA-AAAAAAAA
1 AAAAGAAAAAAAA
*
119212431 AAAAGAAAAAAGA
1 AAAAGAAAAAAAA
119212444 AAAAGAAA
1 AAAAGAAA
119212452 CCATTCAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:119213229 original size:15 final size:15
Alignment explanation
Indices: 119213209--119213238 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
119213199 TTATATTGAA
119213209 ATCAGCATCCACTAC
1 ATCAGCATCCACTAC
119213224 ATCAGCATCCACTAC
1 ATCAGCATCCACTAC
119213239 TCTTACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (15 bp):
ATCAGCATCCACTAC
Found at i:119213460 original size:2 final size:2
Alignment explanation
Indices: 119213453--119213482 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
119213443 AAAACACATG
119213453 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
119213483 TATATATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:119216411 original size:17 final size:17
Alignment explanation
Indices: 119216374--119216411 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
119216364 CATTTAAACT
**
119216374 TTTTATAAAATAATTTG
1 TTTTATAAAATAATTCA
119216391 TTTTATAAAATAATTCA
1 TTTTATAAAATAATTCA
119216408 TTTT
1 TTTT
119216412 CAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTATAAAATAATTCA
Found at i:119217810 original size:17 final size:17
Alignment explanation
Indices: 119217767--119217812 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
119217757 ATCTGTAATG
119217767 ATCTCCATACAATCACTT
1 ATCT-CATACAATCACTT
119217785 ATC-CTATACAATCA-TGT
1 ATCTC-ATACAATCACT-T
119217802 ATCTCATACAA
1 ATCTCATACAA
119217813 GCGTGCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
16 2 0.08
17 19 0.76
18 4 0.16
ACGTcount: A:0.37, C:0.28, G:0.02, T:0.33
Consensus pattern (17 bp):
ATCTCATACAATCACTT
Found at i:119219896 original size:40 final size:40
Alignment explanation
Indices: 119219839--119219976 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 40
119219829 GCTCGATTGT
* * * *
119219839 CTTCGGGACCTAGCCCGGTTATGGTGATTCGCACGATTGC
1 CTTCGGGTCTTAGCCCGGTTATGGTAATTCGCACGAATGC
* *
119219879 CTTCGGGTCTTAACCCGGATT-TGGTAACTT-GCACAAATGC
1 CTTCGGGTCTTAGCCCGG-TTATGGTAA-TTCGCACGAATGC
* *** *
119219919 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGTTATGGTAATTCGCACGAATGC
119219959 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
119219977 ATATAATTAC
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.02
40 75 0.93
41 4 0.05
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGTTATGGTAATTCGCACGAATGC
Found at i:119219933 original size:80 final size:80
Alignment explanation
Indices: 119219867--119220020 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
119219857 TTATGGTGAT
* * ** * *
119219867 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
119219932 CCCGGATATAACAAC
66 CCCGGATATAACAAC
* * * *
119219947 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
119220012 CCCGGATAT
66 CCCGGATAT
119220021 CATTCCAATG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATATAACAAC
Found at i:119219977 original size:40 final size:40
Alignment explanation
Indices: 119219867--119220020 Score: 184
Period size: 40 Copynumber: 3.9 Consensus size: 40
119219857 TTATGGTGAT
* * * **
119219867 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAAC
1 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATAAC
* * *
119219907 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
1 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATAAC
*
119219947 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTAC
1 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATAAC
* * *
119219987 TAGCA-TAATTGCCTTCGGGACTTAGCCCGGATAT
1 TCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
119220021 CATTCCAATG
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 96 0.98
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATAAC
Found at i:119223151 original size:5 final size:5
Alignment explanation
Indices: 119223120--119223184 Score: 60
Period size: 5 Copynumber: 12.6 Consensus size: 5
119223110 AAATTTAGCC
** *
119223120 TAAAA TAATT TAATA TAAAA TCAAAAA TAAAA TAAAA -ATAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T--AAAA TAAAA TAAAA TA-AAA TAAAA
*
119223167 TAAAA TAAAG TAAAA TAA
1 TAAAA TAAAA TAAAA TAA
119223185 GACTTTCCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
4 1 0.02
5 43 0.86
6 1 0.02
7 5 0.10
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (5 bp):
TAAAA
Found at i:119226316 original size:19 final size:19
Alignment explanation
Indices: 119226294--119226337 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
119226284 TGATTTTTGG
119226294 TTCATTTTTCCCATTTTAT
1 TTCATTTTTCCCATTTTAT
119226313 TTCATTTTTCCCATTTTAT
1 TTCATTTTTCCCATTTTAT
119226332 TTCATT
1 TTCATT
119226338 AAAATGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (19 bp):
TTCATTTTTCCCATTTTAT
Found at i:119230000 original size:16 final size:16
Alignment explanation
Indices: 119229981--119230011 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
119229971 AAAAAATCAA
119229981 ATAAATTTTATAATAT
1 ATAAATTTTATAATAT
*
119229997 ATAACTTTTATAATA
1 ATAAATTTTATAATA
119230012 ATTTTATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAAATTTTATAATAT
Found at i:119235245 original size:10 final size:10
Alignment explanation
Indices: 119235224--119235275 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
119235214 TGAATCACGA
*
119235224 TTTTTGAATT
1 TTTTTAAATT
*
119235234 TTTTT-ACTT
1 TTTTTAAATT
119235243 TTTTTAAATT
1 TTTTTAAATT
*
119235253 TTTTTAAAAT
1 TTTTTAAATT
**
119235263 TTAATAAATT
1 TTTTTAAATT
119235273 TTT
1 TTT
119235276 AATTGAATTG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 8 0.24
10 26 0.76
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:119237863 original size:18 final size:18
Alignment explanation
Indices: 119237842--119237888 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
119237832 TAGCGAACAA
*
119237842 AAATATATAAATATAAAT
1 AAATAAATAAATATAAAT
*
119237860 AAATAAATATATAT-AA-
1 AAATAAATAAATATAAAT
119237876 AAATAAAATAAAT
1 AAAT-AAATAAAT
119237889 TGAATAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 4 0.16
17 9 0.36
18 12 0.48
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAAATAAATATAAAT
Found at i:119237879 original size:20 final size:21
Alignment explanation
Indices: 119237846--119237888 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
119237836 GAACAAAAAT
*
119237846 ATATAAATATAAAT-AAATAA
1 ATATAAATAAAAATAAAATAA
*
119237866 ATATATATAAAAATAAAATAA
1 ATATAAATAAAAATAAAATAA
119237887 AT
1 AT
119237889 TGAATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
ATATAAATAAAAATAAAATAA
Found at i:119239493 original size:3 final size:3
Alignment explanation
Indices: 119239485--119239513 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
119239475 TACTATTGCC
119239485 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
119239514 GATTTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:119239893 original size:25 final size:24
Alignment explanation
Indices: 119239865--119239917 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
119239855 TTCATTGGAT
119239865 AAATTAAACATAGCATCATGACTCA
1 AAATT-AACATAGCATCATGACTCA
*** *
119239890 AAATTTGTATAGCATCATGACTTA
1 AAATTAACATAGCATCATGACTCA
119239914 AAAT
1 AAAT
119239918 CTGTACAGCG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (24 bp):
AAATTAACATAGCATCATGACTCA
Found at i:119239901 original size:24 final size:24
Alignment explanation
Indices: 119239874--119239922 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
119239864 TAAATTAAAC
*
119239874 ATAGCATCATGACTCAAAATTTGT
1 ATAGCATCATGACTCAAAATCTGT
*
119239898 ATAGCATCATGACTTAAAATCTGT
1 ATAGCATCATGACTCAAAATCTGT
119239922 A
1 A
119239923 CAGCGCCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (24 bp):
ATAGCATCATGACTCAAAATCTGT
Found at i:119242739 original size:43 final size:43
Alignment explanation
Indices: 119242674--119242846 Score: 190
Period size: 43 Copynumber: 4.0 Consensus size: 43
119242664 ATCTCGTACA
* * * *
119242674 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * ** *
119242716 ATGCCATTGTCCCAGATAGGGTCTTACACAAAATCATAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA-CATATCG
*
119242759 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
119242802 ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
119242845 AT
1 AT
119242847 AACCTAATGT
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 95 0.88
44 5 0.05
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:119248695 original size:18 final size:19
Alignment explanation
Indices: 119248669--119248709 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
119248659 TAATTTTAAT
119248669 AAATAAAAAATTGAGAGAG
1 AAATAAAAAATTGAGAGAG
* *
119248688 AAAT-AAAATTTGAGTGAG
1 AAATAAAAAATTGAGAGAG
119248706 AAAT
1 AAAT
119248710 TAACAGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (19 bp):
AAATAAAAAATTGAGAGAG
Found at i:119256120 original size:22 final size:22
Alignment explanation
Indices: 119256095--119256139 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
119256085 TTCATGGTTT
*
119256095 CCGTGTGAGAGTGTAACCTCCC
1 CCGTGTGAAAGTGTAACCTCCC
*
119256117 CCGTGTGAAAGTGTAACTTCCC
1 CCGTGTGAAAGTGTAACCTCCC
119256139 C
1 C
119256140 AACCCGGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.31, G:0.24, T:0.24
Consensus pattern (22 bp):
CCGTGTGAAAGTGTAACCTCCC
Found at i:119259606 original size:42 final size:43
Alignment explanation
Indices: 119259485--119259606 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 43
119259475 ACATAGGATT
* ** *
119259485 TCGATATGT-GATTCGTGTAAGACCAC-ATCTGGGATGTTGGCA
1 TCGATATGTAGTTTCGTGTAAGACC-CTATCTGGGACATCGGCA
* * * *
119259527 TCGATTTGTAGTTTACGTGTAAGACCATGTCTAGGACATCGGCA
1 TCGATATGTAGTTT-CGTGTAAGACCCTATCTGGGACATCGGCA
119259571 TCGTATATG-AG-TTCGTGTAAGACCCTATCTGGGACA
1 TCG-ATATGTAGTTTCGTGTAAGACCCTATCTGGGACA
119259607 GTGGTATCGA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
42 28 0.44
43 5 0.08
44 27 0.42
45 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TCGATATGTAGTTTCGTGTAAGACCCTATCTGGGACATCGGCA
Found at i:119266375 original size:30 final size:30
Alignment explanation
Indices: 119266334--119266393 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
119266324 TATTTTATTA
*
119266334 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTCTGTTATTATTTTAAAGGCATTTG
*
119266364 TTAATTCTGTTATTATTTTAGAGGCATTTG
1 TTAATTCTGTTATTATTTTAAAGGCATTTG
119266394 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.55
Consensus pattern (30 bp):
TTAATTCTGTTATTATTTTAAAGGCATTTG
Found at i:119269730 original size:35 final size:35
Alignment explanation
Indices: 119269639--119269805 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
119269629 TATGGCAAAG
* *
119269639 TGTGAAATGTAGGTATGGTATCATCCACACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
*
119269674 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
119269709 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGT
*** * *
119269749 TAAAAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGT
**
119269784 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
119269806 TCAATGAGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
34 1 0.01
35 82 0.71
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 28 0.24
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
Found at i:119269757 original size:75 final size:75
Alignment explanation
Indices: 119269639--119269809 Score: 203
Period size: 75 Copynumber: 2.4 Consensus size: 75
119269629 TATGGCAAAG
*** *
119269639 TGTGAAATGTAGGTATGG---TATC--ATCCACACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCACACTGAGTTAAAAAATGTAGGTATGGCATT-TC
*
119269698 CCATACTGAGC
65 CCATACCGAGC
*
119269709 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCACACTGAGTTAAAAAATGTAGGTATGGCATTTCC
*
119269774 CATACCGAGT
66 CATACCGAGC
**
119269784 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
119269810 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 59 0.69
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCACACTGAGTTAAAAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:119273062 original size:78 final size:76
Alignment explanation
Indices: 119272889--119273143 Score: 314
Period size: 78 Copynumber: 3.3 Consensus size: 76
119272879 ATAGAGATTC
* *
119272889 TGTTTGAAACAAAAATCAAACAAATCCTATTAAACGGCAGGAA-AAATCCTGAAACAGGAGTGTT
1 TGTTTGAAACAGAAATCAAACAAATCCTGTTAAACGGCAGGAATAAATCCTGAAACAGGAGTGTT
* *
119272953 CAATTAATTCT
66 CAATTGATTTT
* * * * *
119272964 TGTTTTGAAATAGAAGTCAAACAAATCCTGTTAAACGGCAGGAATAGAGTCTTGAAGCAGGAGTG
1 TG-TTTGAAACAGAAATCAAACAAATCCTGTTAAACGGCAGGAATA-AATCCTGAAACAGGAGTG
119273029 TTCAATTGATTTT
64 TTCAATTGATTTT
* * * * *
119273042 CTGTTTGAAACAGAAATCAAACAAATCCTGTTAAATGGCAAGAGTAAAATCCTAAAACAGGAATG
1 -TGTTTGAAACAGAAATCAAACAAATCCTGTTAAACGGCAGGAAT-AAATCCTGAAACAGGAGTG
* *
119273107 TTTAATTGGCTTTT
64 TTCAATT-GATTTT
119273121 TGTTTGAAACAGAAATCAAACAA
1 TGTTTGAAACAGAAATCAAACAA
119273144 TCTCTTGTTG
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
75 2 0.01
76 37 0.24
77 1 0.01
78 105 0.69
79 8 0.05
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (76 bp):
TGTTTGAAACAGAAATCAAACAAATCCTGTTAAACGGCAGGAATAAATCCTGAAACAGGAGTGTT
CAATTGATTTT
Found at i:119274073 original size:73 final size:73
Alignment explanation
Indices: 119273954--119274102 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 73
119273944 TAATTCGATG
119273954 CCCTCCCAATTTCTAAATTTGATCTAAATCATCTAGTATCATAACTATTGCAAGAACCAATGTTT
1 CCCTCCCAATTTCTAAATTTGATCTAAATCATCTAGTATCATAACTATTGCAAGAACCAATGTTT
119274019 CGTGCAAA
66 CGTGCAAA
119274027 CCCTCCCAATTTCTAAATTTGATCTAAATCATCTAGTATCATAACTATTGCAAGAACCAATGTTT
1 CCCTCCCAATTTCTAAATTTGATCTAAATCATCTAGTATCATAACTATTGCAAGAACCAATGTTT
*
119274092 GGTGCAAA
66 CGTGCAAA
119274100 CCC
1 CCC
119274103 CCATAATCAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (73 bp):
CCCTCCCAATTTCTAAATTTGATCTAAATCATCTAGTATCATAACTATTGCAAGAACCAATGTTT
CGTGCAAA
Found at i:119275241 original size:11 final size:11
Alignment explanation
Indices: 119275225--119275289 Score: 67
Period size: 11 Copynumber: 5.9 Consensus size: 11
119275215 AAACAATTAC
*
119275225 AACAAAATAGT
1 AACAAAATAAT
119275236 AACAAAATAAT
1 AACAAAATAAT
* *
119275247 AATAAAATGAT
1 AACAAAATAAT
* *
119275258 AGCAAAATAAG
1 AACAAAATAAT
*
119275269 AAAAAAATAAT
1 AACAAAATAAT
*
119275280 AAGAAAATAA
1 AACAAAATAA
119275290 CATTAAAATA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 43 1.00
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.17
Consensus pattern (11 bp):
AACAAAATAAT
Found at i:119275300 original size:22 final size:22
Alignment explanation
Indices: 119275223--119275302 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
119275213 CTAAACAATT
* * *
119275223 ACAACAAAATAGTAACAAAATA
1 ACAATAAAATAATAAGAAAATA
* *
119275245 ATAATAAAATGAT-AGCAAAATA
1 ACAATAAAATAATAAG-AAAATA
* *
119275267 AGAAAAAAATAATAAGAAAATA
1 ACAATAAAATAATAAGAAAATA
*
119275289 ACATTAAAATAATA
1 ACAATAAAATAATA
119275303 TTTTTTTAAC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 1 0.02
22 42 0.93
23 2 0.04
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (22 bp):
ACAATAAAATAATAAGAAAATA
Found at i:119275810 original size:4 final size:4
Alignment explanation
Indices: 119275801--119275833 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
119275791 CTCACGCCTG
119275801 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
119275834 ATAATATCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:119282609 original size:11 final size:11
Alignment explanation
Indices: 119282595--119282644 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
119282585 TTTCAATATT
119282595 CTCTCAAATTC
1 CTCTCAAATTC
119282606 CTCTCAAA-T-
1 CTCTCAAATTC
*
119282615 CTCTCAAATTT
1 CTCTCAAATTC
*
119282626 CTCTTAAATTC
1 CTCTCAAATTC
119282637 CTCTCAAA
1 CTCTCAAA
119282645 ACTCTCGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.24
10 2 0.06
11 24 0.71
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:119282619 original size:20 final size:21
Alignment explanation
Indices: 119282587--119282644 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
119282577 CTTTAATCTT
119282587 TCAATATTCTCTCAAATTCCTC
1 TCAA-ATTCTCTCAAATTCCTC
*
119282609 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTCCTC
*
119282629 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
119282645 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 12 0.38
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTCCTC
Found at i:119284366 original size:30 final size:30
Alignment explanation
Indices: 119284326--119284390 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
119284316 GACGACACAA
*
119284326 GCCCATCAACAGCG-CCCACACAATCACCCG
1 GCCCAGCAACAG-GACCCACACAATCACCCG
* * *
119284356 GCCCAGCAACAGGACCTACACAGTCACCGG
1 GCCCAGCAACAGGACCCACACAATCACCCG
119284386 GCCCA
1 GCCCA
119284391 ACAGTTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.29, C:0.46, G:0.18, T:0.06
Consensus pattern (30 bp):
GCCCAGCAACAGGACCCACACAATCACCCG
Found at i:119284467 original size:18 final size:18
Alignment explanation
Indices: 119284444--119284486 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
119284434 TGCCAGGTAC
*
119284444 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
119284462 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
119284480 GTTTCCT
1 GTATCCT
119284487 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:119288486 original size:16 final size:17
Alignment explanation
Indices: 119288454--119288486 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
119288444 TTTATAAGTA
*
119288454 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
119288471 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
119288487 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:119289019 original size:138 final size:138
Alignment explanation
Indices: 119288764--119289027 Score: 429
Period size: 138 Copynumber: 1.9 Consensus size: 138
119288754 TTTATTTTGA
* * * *
119288764 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
* * *
119288829 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCACGGTATCTTTTAACCATGGTCTTATTCA
66 TCAACCATGGTCTTATTCGTTTCATATCACGTTGCCACGGTATCTTTCAACCATGGTCTTATTCA
119288894 TTTCCCGT
131 TTTCCCGT
* * *
119288902 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
*
119288967 TCAACCATGGTCTTATTCGTTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTA
66 TCAACCATGGTCTTATTCGTTTCATATCACGTTGCCACGGTATCTTTCAACCATGGTCTTA
119289028 CACATTTCAT
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
138 115 1.00
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.42
Consensus pattern (138 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATTCGTTTCATATCACGTTGCCACGGTATCTTTCAACCATGGTCTTATTCA
TTTCCCGT
Found at i:119289041 original size:46 final size:46
Alignment explanation
Indices: 119288747--119289037 Score: 372
Period size: 46 Copynumber: 6.4 Consensus size: 46
119288737 TCCCATCCAC
* * * * * *
119288747 GGTCTTATTTATTT--TGACATGATGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
*
119288791 GGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCA-TTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
* * * *
119288837 GGTCTTATTCTTTTCATGTCACGTTGCCACGGTATCTTTTAACCAT
1 GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
**
119288883 GGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
**
119288929 GGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
* * *
119288975 GGTCTTATTCGTTTCATATCACGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
**
119289021 GGTCTTACACATTTCAT
1 GGTCTTATTCATTTCAT
119289038 ATCAGAGAGC
Statistics
Matches: 218, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
44 9 0.04
45 7 0.03
46 202 0.93
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (46 bp):
GGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCAT
Found at i:119292131 original size:125 final size:126
Alignment explanation
Indices: 119291700--119292215 Score: 784
Period size: 126 Copynumber: 4.1 Consensus size: 126
119291690 GGGGTATTAC
119291700 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
1 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
** *
119291765 TGACACTATTTATGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACCACTGTAGCAAA
66 TGACACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTGTAGCAAA
* * * * *
119291826 AGAGCATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAAGCGTTTT
1 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
*
119291891 T-ACCACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTATTGTAGCAAA
66 TGA-CACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTGTAGCAAA
** * *
119291952 AGAGCGTTTACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAAGCATTTT
1 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
* * * * * *
119292017 TTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGATA-TAATGTAGGAAA
66 TGACACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTGTAGCAAA
* *
119292077 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAAGCGTTTT
1 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
* * * *
119292142 TGACACTATTTGCGCAGACACGTCTTTTCAAATTTATTTTTTCAGAGACTACTATAGCAAA
66 TGACACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTGTAGCAAA
119292203 AGAGCGTCCACGT
1 AGAGCGTCCACGT
119292216 AGAAACTTTT
Statistics
Matches: 352, Mismatches: 35, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
125 115 0.33
126 236 0.67
127 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
TGACACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTGTAGCAAA
Found at i:119292202 original size:251 final size:252
Alignment explanation
Indices: 119291700--119292215 Score: 802
Period size: 251 Copynumber: 2.1 Consensus size: 252
119291690 GGGGTATTAC
*
119291700 AGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
1 AGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
** *
119291765 TGACACTATTTATGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACCACTGTAGCAAAAGAG
66 TGACACTATTTACACAGACACATCTTCTCAAAATTATTTTTTCAGAGACCAATGTAGCAAAAGAG
119291830 CATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAAGCGTTTTTACC
131 CATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAAGCGTTTTTACC
* *
119291895 ACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTATTGTAGCAAA
196 ACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTATAGCAAA
** *
119291952 AGAGCGTTTACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAAGCATTTT
1 AGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
* * * * * *
119292017 TTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGATA-TAATGTAGGAAAAGAG
66 TGACACTATTTACACAGACACATCTTCTCAAAATTATTTTTTCAGAGACCAATGTAGCAAAAGAG
* * * * *
119292081 CGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAAGCGTTTTTGA-
131 CATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAAGCGTTTTT-AC
* * *
119292145 CACTATTTGCGCAGACACGTCTTTTCAAATTTATTTTTTCAGAGACTACTATAGCAAA
195 CACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTATAGCAAA
119292203 AGAGCGTCCACGT
1 AGAGCGTCCACGT
119292216 AGAAACTTTT
Statistics
Matches: 238, Mismatches: 25, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
251 134 0.56
252 104 0.44
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (252 bp):
AGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAAGCATTTT
TGACACTATTTACACAGACACATCTTCTCAAAATTATTTTTTCAGAGACCAATGTAGCAAAAGAG
CATCCACATGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTGAAGCGTTTTTACC
ACTATTTGCGCAGACACATCTTCTCAAAATTATTTTTTCAGAGACTACTATAGCAAA
Found at i:119292316 original size:15 final size:15
Alignment explanation
Indices: 119292296--119292325 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
119292286 TTTTTTAAAT
119292296 ACCCTAAAATCCTAA
1 ACCCTAAAATCCTAA
119292311 ACCCTAAAATCCTAA
1 ACCCTAAAATCCTAA
119292326 TCTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (15 bp):
ACCCTAAAATCCTAA
Found at i:119294641 original size:51 final size:48
Alignment explanation
Indices: 119294586--119294690 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 48
119294576 AGGTTGACAG
*
119294586 GACAGAATAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGA
1 GACAGAATAG-AATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGA
* *
119294637 GACAG----GATTGAGCCATGTAAGTCCATATTATATATGGCATTGGA
1 GACAGAATAGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGA
119294681 GACAGGAATA
1 GACA-GAATA
119294691 ATTCATGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
44 17 0.37
45 1 0.02
46 22 0.48
47 1 0.02
51 5 0.11
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (48 bp):
GACAGAATAGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGA
Found at i:119294687 original size:44 final size:45
Alignment explanation
Indices: 119294597--119294725 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
119294587 ACAGAATAGA
*
119294597 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
119294643 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
119294687 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
119294726 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:119302343 original size:29 final size:28
Alignment explanation
Indices: 119302311--119302413 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
119302301 GTGACGAGAT
* *
119302311 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
119302340 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
119302369 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
119302398 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
119302414 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:119316481 original size:29 final size:29
Alignment explanation
Indices: 119316422--119316524 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
119316412 GTGACGAGAT
* * * *
119316422 TGGCACTGAGTGTGTGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
119316451 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
119316480 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
119316509 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
119316525 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:119318312 original size:178 final size:178
Alignment explanation
Indices: 119318058--119319145 Score: 1565
Period size: 178 Copynumber: 6.1 Consensus size: 178
119318048 TACTGCTTAA
* * * * *
119318058 GGAGATAAGATCTGTAACTTTCAGTCTAC-TCCACTG-TAACTCAGGACA-ATAAGACTTGTATC
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCC-TTGCTACCTCAGGA-AGATAAGACTTGTATC
* *
119318120 TTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCCAAAATCTGCTCCATAGCCGA
64 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGA
* *
119318185 TACATAGAGATAAGAGTCGCCATTTTCGATCTGTTCTATAGCCGATACAT
129 TACATAGAGATAAGACTCGCCATTTTCGATCTGCTCTATAGCCGATACAT
*
119318235 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTATATCTT
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* *
119318300 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTGCATAGCCGATA
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
* * * * * *
119318365 CATGGAAATAAGAATCGCCATTTTCGATCTGCTCCATAGCCGAGATAT
131 CATAGAGATAAGACTCGCCATTTTCGATCTGCTCTATAGCCGATACAT
*
119318413 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTTGTATCTT
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* * * *
119318478 CAACCTGCTCTCTTGCTAACTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGTCGATA
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
* * * *
119318543 CATGGAGATAAGACTCGCTATTTTTGATCTACTCTATAGCCGATACAT
131 CATAGAGATAAGACTCGCCATTTTCGATCTGCTCTATAGCCGATACAT
* * *
119318591 GGAGATAAGATCTGTAAATTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACCTATATCTT
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* * * * * * *
119318656 CAACCTGCTCTCCTGCTACCTTAGAGAAATAAGGTTAGTGGCTAAAATCTACTCCATAGCTGATA
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
* * * * *
119318721 CATAGAGATAAGACTCGTCATTTTTGATCT-ATTTCATAGCCAATACAT
131 CATAGAGATAAGACTCGCCATTTTCGATCTGCTCT-ATAGCCGATACAT
* * *
119318769 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCTTTGCTACCTTAGGAAGATAAGACCTGTATCTT
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* * *
119318834 CAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAACCGATA
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
* * * *
119318899 CATGGAGACAAGACTCGCCATTTTCAATCTACT-TCATAGCCGATACAT
131 CATAGAGATAAGACTCGCCATTTTCGATCTGCTCT-ATAGCCGATACAT
* *
119318947 GGAGATAATATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACATGTATCTT
1 GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* * * *
119319012 CAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTGGTAGCCAAAATCTGCTCCATAGCTGATA
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
* *
119319077 CATAGAGATAAGACTCGCCATTTTCGACCTGCTCCATAGCCGATACAT
131 CATAGAGATAAGACTCGCCATTTTCGATCTGCTCTATAGCCGATACAT
119319125 GGAGATAAGATCTGTAAATTT
1 GGAGATAAGATCTGTAAATTT
119319146 CACCGATGTC
Statistics
Matches: 822, Mismatches: 83, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
177 31 0.04
178 790 0.96
179 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (178 bp):
GGAGATAAGATCTGTAAATTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATA
CATAGAGATAAGACTCGCCATTTTCGATCTGCTCTATAGCCGATACAT
Found at i:119323334 original size:19 final size:19
Alignment explanation
Indices: 119323293--119323334 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
119323283 AAATCAAATG
*
119323293 CAAATGATGCAATGCAATG
1 CAAATGATGCAATGCAATA
*
119323312 CAAATGCATGGAATG-AATA
1 CAAATG-ATGCAATGCAATA
119323331 CAAA
1 CAAA
119323335 AGAAAGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (19 bp):
CAAATGATGCAATGCAATA
Found at i:119325428 original size:18 final size:18
Alignment explanation
Indices: 119325405--119325476 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 18
119325395 CTTAGAAGAA
119325405 AATATATATACATAAAAT
1 AATATATATACATAAAAT
*
119325423 AATATA-A-A-AT-CAAT
1 AATATATATACATAAAAT
*
119325437 AATATATATACA-AAAAA
1 AATATATATACATAAAAT
* *
119325454 AGAAATATTTACATAAAAT
1 A-ATATATATACATAAAAT
119325473 AATA
1 AATA
119325477 GGAAATCAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
14 9 0.22
15 3 0.07
16 2 0.05
17 5 0.12
18 17 0.41
19 5 0.12
ACGTcount: A:0.64, C:0.06, G:0.01, T:0.29
Consensus pattern (18 bp):
AATATATATACATAAAAT
Found at i:119327258 original size:31 final size:31
Alignment explanation
Indices: 119327197--119327262 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
119327187 TTAAAAAAAT
*
119327197 AATTCAACTCTTTTTGTAAAATTAATAGTCA
1 AATTCAACTCTTTTTGTAAAATTAAGAGTCA
* **
119327228 AATTCAACT-TTTTTTTAAAGATTGGGAGTCA
1 AATTCAACTCTTTTTGTAAA-ATTAAGAGTCA
119327259 AATT
1 AATT
119327263 TAGCTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (31 bp):
AATTCAACTCTTTTTGTAAAATTAAGAGTCA
Found at i:119329122 original size:15 final size:15
Alignment explanation
Indices: 119329092--119329120 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
119329082 AGTTTTAAAC
119329092 ATTTATTATTTATTT
1 ATTTATTATTTATTT
119329107 ATTTATT-TTTATTT
1 ATTTATTATTTATTT
119329121 TAATTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTATTATTTATTT
Found at i:119333464 original size:20 final size:20
Alignment explanation
Indices: 119333439--119333483 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
119333429 CCTTAATTTG
119333439 TTTTATTTATAAGA-TTATTA
1 TTTTATTTATAA-ATTTATTA
119333459 TTTTATTTATAAATTTATTA
1 TTTTATTTATAAATTTATTA
119333479 TTTTA
1 TTTTA
119333484 ATAAATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTATTTATAAATTTATTA
Found at i:119341579 original size:18 final size:21
Alignment explanation
Indices: 119341553--119341600 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
119341543 ATTAAAAATA
*
119341553 TAATAATTTT-AT-ATTT-TT
1 TAATTATTTTAATGATTTATT
119341571 TAATTATTTTAATGATTTATT
1 TAATTATTTTAATGATTTATT
119341592 TAATT-TTTT
1 TAATTATTTT
119341601 CTTTGAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 9 0.35
19 2 0.08
20 8 0.31
21 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TAATTATTTTAATGATTTATT
Found at i:119342870 original size:17 final size:17
Alignment explanation
Indices: 119342815--119342871 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
119342805 ACATGAAAAG
*
119342815 AAGAAACAAAACAAATTT
1 AAGAAA-AAAAAAAATTT
* **
119342833 AAGAAAAACCAAAAA-CA
1 AAGAAAAA-AAAAAATTT
119342850 AAGAAAAAAAAAAATTT
1 AAGAAAAAAAAAAATTT
119342867 AAGAA
1 AAGAA
119342872 CAAATAATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
16 5 0.17
17 15 0.50
18 10 0.33
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.11
Consensus pattern (17 bp):
AAGAAAAAAAAAAATTT
Found at i:119343257 original size:16 final size:16
Alignment explanation
Indices: 119343236--119343267 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
119343226 AGTTAAACTC
119343236 AAATTAAGTCTAATAA
1 AAATTAAGTCTAATAA
119343252 AAATTAAGTCTAATAA
1 AAATTAAGTCTAATAA
119343268 TTGAACCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATTAAGTCTAATAA
Found at i:119344694 original size:17 final size:18
Alignment explanation
Indices: 119344672--119344712 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
119344662 TTTTTAAAAT
119344672 TATAAAAAAAAT-AGAAA
1 TATAAAAAAAATGAGAAA
119344689 TAT-AAAAAAATGAGAAA
1 TATAAAAAAAATGAGAAA
119344706 TA-AAAAA
1 TATAAAAA
119344713 TTCAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
TATAAAAAAAATGAGAAA
Found at i:119344697 original size:15 final size:16
Alignment explanation
Indices: 119344673--119344712 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
119344663 TTTTAAAATT
119344673 ATAAAAAAAAT-AGAA
1 ATAAAAAAAATGAGAA
119344688 ATATAAAAAAATGAGAA
1 ATA-AAAAAAATGAGAA
119344705 ATAAAAAA
1 ATAAAAAA
119344713 TTCAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.13
16 13 0.57
17 7 0.30
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (16 bp):
ATAAAAAAAATGAGAA
Found at i:119345849 original size:11 final size:11
Alignment explanation
Indices: 119345828--119345864 Score: 51
Period size: 9 Copynumber: 3.5 Consensus size: 11
119345818 GTTTATGAAG
119345828 TTTTAATAATAT
1 TTTTAA-AATAT
119345840 TTTTAAAATAT
1 TTTTAAAATAT
119345851 TTTT--AATAT
1 TTTTAAAATAT
119345860 TTTTA
1 TTTTA
119345865 TAATTTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.38
11 9 0.38
12 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:119345868 original size:11 final size:11
Alignment explanation
Indices: 119345828--119345868 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
119345818 GTTTATGAAG
*
119345828 TTTTAATAATA
1 TTTTTATAATA
*
119345839 TTTTTAAAATA
1 TTTTTATAATA
119345850 -TTTT-TAATA
1 TTTTTATAATA
119345859 TTTTTATAAT
1 TTTTTATAAT
119345869 TTAACAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 4 0.16
10 8 0.32
11 13 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTTATAATA
Found at i:119348638 original size:16 final size:16
Alignment explanation
Indices: 119348613--119348647 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
119348603 AAAATGTAAT
*
119348613 TTTATTATTTTAATAA
1 TTTATAATTTTAATAA
*
119348629 TTTATAATTTTTATAA
1 TTTATAATTTTAATAA
119348645 TTT
1 TTT
119348648 TTAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTATAATTTTAATAA
Found at i:119351777 original size:12 final size:12
Alignment explanation
Indices: 119351760--119351784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119351750 TCATCTGATG
119351760 AAAATGAAGAGA
1 AAAATGAAGAGA
119351772 AAAATGAAGAGA
1 AAAATGAAGAGA
119351784 A
1 A
119351785 TTCTAGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (12 bp):
AAAATGAAGAGA
Found at i:119354641 original size:23 final size:23
Alignment explanation
Indices: 119354552--119354641 Score: 114
Period size: 23 Copynumber: 4.0 Consensus size: 23
119354542 ACCTGATCAG
*
119354552 TATACGACACAT-AGGTGCCT-A
1 TATACGACACATAAAGTGCCTGA
* * *
119354573 -ATACTACACATGAGGTGCCTGA
1 TATACGACACATAAAGTGCCTGA
*
119354595 AATACGACACATAAAGTGCCTGA
1 TATACGACACATAAAGTGCCTGA
119354618 TATACGACACATAAAGTGCCTGA
1 TATACGACACATAAAGTGCCTGA
119354641 T
1 T
119354642 CGGCAAAGCA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
20 10 0.16
21 8 0.13
22 1 0.02
23 42 0.69
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (23 bp):
TATACGACACATAAAGTGCCTGA
Found at i:119357467 original size:30 final size:30
Alignment explanation
Indices: 119357433--119357500 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
119357423 TTCTGAGGCT
* *
119357433 GTGTCTCTCACACGATCGAGACACATGGCC
1 GTGTCTCTCACACGATCGAGACACACGACC
* *
119357463 GTGTCTCTCACACGGTTGAGACACACGACC
1 GTGTCTCTCACACGATCGAGACACACGACC
119357493 GTGTCTCT
1 GTGTCTCT
119357501 GCCCGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (30 bp):
GTGTCTCTCACACGATCGAGACACACGACC
Found at i:119358563 original size:50 final size:49
Alignment explanation
Indices: 119358440--119358585 Score: 170
Period size: 50 Copynumber: 3.0 Consensus size: 49
119358430 CATATAATAA
* * * *
119358440 GATGCCAACGCCATGTTCCAGATATGGTCTTACATGGGATT-ACCA-CTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTCA-TATCTC
* * *
119358488 GATGCCAATGACATGTCCCATACATGGTCTTACATGGGATCTCATATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-TCATATCTC
* *
119358538 GATGCTAATGCCATGTCCCAGACATGGTCCTACATGGGATTTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTCATATC
119358586 AACGCCATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
48 35 0.43
49 2 0.02
50 44 0.54
51 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (49 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTCATATCTC
Found at i:119362139 original size:12 final size:12
Alignment explanation
Indices: 119362122--119362152 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
119362112 GAAGCAGGGG
119362122 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
119362134 AGAAAAAGGGAA
1 AGAAAAAGAGAA
119362146 AGAAAAA
1 AGAAAAA
119362153 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:119366770 original size:21 final size:20
Alignment explanation
Indices: 119366741--119366779 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
119366731 TCATTGAGGT
* *
119366741 AAACATTTTCAATCAAGTTA
1 AAACATTTTAAAACAAGTTA
119366761 AAACTATTTTAAAACAAGT
1 AAAC-ATTTTAAAACAAGT
119366780 CAGTATTGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (20 bp):
AAACATTTTAAAACAAGTTA
Found at i:119366857 original size:21 final size:20
Alignment explanation
Indices: 119366807--119366862 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 20
119366797 AAAAAGTATC
* *
119366807 AAGTATCGATA-GTTTTCAG
1 AAGTATCGATACCTTTTCAA
*
119366826 AA-TATCAATACCTTTTCAAA
1 AAGTATCGATACCTTTTC-AA
119366846 AAGTATCGATACCTTTT
1 AAGTATCGATACCTTTT
119366863 ACCAGGTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 3 0.10
21 13 0.43
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (20 bp):
AAGTATCGATACCTTTTCAA
Found at i:119376593 original size:5 final size:5
Alignment explanation
Indices: 119376583--119376613 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
119376573 TTTTAATATC
119376583 CATTT CATTT CATTT ACATTT CATTT CATTT
1 CATTT CATTT CATTT -CATTT CATTT CATTT
119376614 AAATTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (5 bp):
CATTT
Found at i:119376604 original size:16 final size:16
Alignment explanation
Indices: 119376583--119376655 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 16
119376573 TTTTAATATC
119376583 CATTTCATTTCATTTA
1 CATTTCATTTCATTTA
119376599 CATTTCATTTCATTTA
1 CATTTCATTTCATTTA
* *
119376615 AATTTAAATTTTCTATTTA
1 CATTT-CA-TTTC-ATTTA
*
119376634 AATTT-ATTT-ATTTA
1 CATTTCATTTCATTTA
119376648 TCATTTCA
1 -CATTTCA
119376656 GTTTTTATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
14 5 0.10
15 4 0.08
16 24 0.49
17 2 0.04
18 4 0.08
19 10 0.20
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (16 bp):
CATTTCATTTCATTTA
Found at i:119376664 original size:19 final size:18
Alignment explanation
Indices: 119376640--119376701 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
119376630 TTTAAATTTA
119376640 TTTATTTATCATTTCAGTT
1 TTTATTTATCATTTCA-TT
119376659 TTTATTT-TCATTTTCATT
1 TTTATTTATCA-TTTCATT
** *
119376677 TAAATTTATAATTT-ATT
1 TTTATTTATCATTTCATT
119376694 TTTATTTA
1 TTTATTTA
119376702 AACTTTTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 9 0.25
18 13 0.36
19 14 0.39
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTATTTATCATTTCATT
Found at i:119376784 original size:19 final size:20
Alignment explanation
Indices: 119376762--119376802 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
119376752 ACAAATTACA
*
119376762 TTTCATTT-CATTAATTTTT
1 TTTCATTTAAATTAATTTTT
*
119376781 TTTCATTTAAATTTATTTTT
1 TTTCATTTAAATTAATTTTT
119376801 TT
1 TT
119376803 CCTAATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTCATTTAAATTAATTTTT
Found at i:119376906 original size:27 final size:27
Alignment explanation
Indices: 119376847--119376933 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
119376837 ACAACGAGTA
119376847 AAATTTCAAATTAC-TTTTC-TTTCCATTT
1 AAATTT-AAATT-CTTTTTCATTT-CATTT
* *
119376875 TAATTT-AATT-TTTTCCTTATTTCATTT
1 AAATTTAAATTCTTTT--TCATTTCATTT
119376902 AAATTTAAATTCTTTTTCATTTCATTT
1 AAATTTAAATTCTTTTTCATTTCATTT
119376929 AAATT
1 AAATT
119376934 ATCTATCTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
25 3 0.06
26 4 0.08
27 26 0.53
28 12 0.24
29 4 0.08
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.59
Consensus pattern (27 bp):
AAATTTAAATTCTTTTTCATTTCATTT
Found at i:119376930 original size:21 final size:20
Alignment explanation
Indices: 119376894--119377026 Score: 70
Period size: 21 Copynumber: 5.9 Consensus size: 20
119376884 TTTTTCCTTA
119376894 TTTCATTTAAATTTAAATTCTT
1 TTTCATTT-AATTTAAATT-TT
*
119376916 TTTCATTTCATTTAAATTATCT
1 TTTCATTTAATTTAAATT-T-T
119376938 ATCTTCCTATTTTAATTT-AATTTT
1 -T-TT-C-A-TTTAATTTAAATTTT
*
119376962 TTGTCATTTCATTTAAATTATTT
1 TT-TCATTTAATTTAAA-T-TTT
*
119376985 TATTCCATGTAAATTTAAATTTT
1 T-TT-CAT-TTAATTTAAATTTT
* *
119377008 TTCTTATTTCATTTAAATT
1 TT-TCATTTAATTTAAATT
119377027 ATCTTTTTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 29
0.70 0.07 0.23
Matches are distributed among these distances:
20 7 0.08
21 23 0.26
22 15 0.17
23 13 0.15
24 8 0.09
25 10 0.11
26 5 0.06
27 7 0.08
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTCATTTAATTTAAATTTT
Found at i:119377046 original size:25 final size:24
Alignment explanation
Indices: 119376948--119377046 Score: 69
Period size: 25 Copynumber: 4.1 Consensus size: 24
119376938 ATCTTCCTAT
* * * *
119376948 TTTAATTTAATTTTTTGTCATTTCA
1 TTTAAATT-ATTTTTTTTCATGTAA
* *
119376973 TTTAAATTATTTTATTCCATGTAAA
1 TTTAAATTATTTTTTTTCATGT-AA
* * *
119376998 TTTAAA-T-TTTTTCTT-ATTTCA
1 TTTAAATTATTTTTTTTCATGTAA
119377019 TTTAAATTATCTTTTTTTCATGTAA
1 TTTAAATTAT-TTTTTTTCATGTAA
119377044 TTT
1 TTT
119377047 TTTTATATCT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
21 7 0.13
22 4 0.07
23 6 0.11
24 17 0.31
25 21 0.38
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (24 bp):
TTTAAATTATTTTTTTTCATGTAA
Found at i:119382087 original size:21 final size:21
Alignment explanation
Indices: 119382061--119382100 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
119382051 AAAAGAGATA
* *
119382061 TTTGATTTGATGAGTGCAGTC
1 TTTGATTTAATGAATGCAGTC
119382082 TTTGATTTAATGAATGCAG
1 TTTGATTTAATGAATGCAG
119382101 CTAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.42
Consensus pattern (21 bp):
TTTGATTTAATGAATGCAGTC
Found at i:119385678 original size:26 final size:25
Alignment explanation
Indices: 119385645--119385703 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
119385635 TTTGTAATTT
*
119385645 TCCCAAATCACATAGTTTGTTTTACA
1 TCCCAAAT-ACATACTTTGTTTTACA
* **
119385671 TCTCAAATGTATACTTTGTTTTACA
1 TCCCAAATACATACTTTGTTTTACA
119385696 TCCCAAAT
1 TCCCAAAT
119385704 GTACACTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 21 0.75
26 7 0.25
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (25 bp):
TCCCAAATACATACTTTGTTTTACA
Found at i:119385688 original size:25 final size:25
Alignment explanation
Indices: 119385660--119385717 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
119385650 AATCACATAG
* *
119385660 TTTGTTTTACATCTCAAATGTATAC
1 TTTGTTTTACATCCCAAATGTACAC
119385685 TTTGTTTTACATCCCAAATGTACAC
1 TTTGTTTTACATCCCAAATGTACAC
*
119385710 TTTTTTTT
1 TTTGTTTT
119385718 TTCAATTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (25 bp):
TTTGTTTTACATCCCAAATGTACAC
Found at i:119388993 original size:25 final size:25
Alignment explanation
Indices: 119388965--119389014 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
119388955 GATACAAAAA
119388965 CAAGCCCAATTTTGGTCTCATAAAT
1 CAAGCCCAATTTTGGTCTCATAAAT
119388990 CAAGCCCAATTTTGGTCTCATAAAT
1 CAAGCCCAATTTTGGTCTCATAAAT
119389015 TTAACTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (25 bp):
CAAGCCCAATTTTGGTCTCATAAAT
Found at i:119390966 original size:27 final size:27
Alignment explanation
Indices: 119390936--119390987 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
119390926 TAGTAACAGT
*
119390936 TGGGCCTAA-CCCATTAACAGAATCAGA
1 TGGGCCTAAGCCCAAT-ACAGAATCAGA
119390963 TGGGCCTAAGCCCAATACAGAATCA
1 TGGGCCTAAGCCCAATACAGAATCA
119390988 ATATCAGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (27 bp):
TGGGCCTAAGCCCAATACAGAATCAGA
Found at i:119393171 original size:40 final size:38
Alignment explanation
Indices: 119393127--119393202 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 38
119393117 TGAAAAAGCA
* *
119393127 TCCTACAGGGCGCGCTTTTATTCTCTCTCCTAAAAACACG
1 TCCTACAGGGCACACTTTTA-TCTCTCTCC-AAAAACACG
*
119393167 TCCTACAGGGCACATTTTTATCTCTCTCCAAAAACA
1 TCCTACAGGGCACACTTTTATCTCTCTCCAAAAACA
119393203 ACGCCGATCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 7 0.21
39 9 0.27
40 17 0.52
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (38 bp):
TCCTACAGGGCACACTTTTATCTCTCTCCAAAAACACG
Found at i:119393701 original size:5 final size:5
Alignment explanation
Indices: 119393686--119393716 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
119393676 TCATAACATG
*
119393686 TAAAA TGAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
119393717 TAATTTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:119394479 original size:19 final size:21
Alignment explanation
Indices: 119394446--119394485 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
119394436 CTAATCCTCA
*
119394446 AAACTCTTTATTTTTC-CCTT
1 AAACTCTTTACTTTTCACCTT
119394466 AAACT-TTTACTTTTCACCTT
1 AAACTCTTTACTTTTCACCTT
119394486 TTACCCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.53
Consensus pattern (21 bp):
AAACTCTTTACTTTTCACCTT
Found at i:119398417 original size:23 final size:23
Alignment explanation
Indices: 119398391--119398442 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
119398381 TGATTTTTAA
119398391 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
119398414 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
119398437 ATTTAG
1 ATTTAG
119398443 TGATAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:119398418 original size:13 final size:13
Alignment explanation
Indices: 119398400--119398455 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
119398390 AATTTAGAAT
119398400 TATTTAGTGATAA
1 TATTTAGTGATAA
*
119398413 TATTTA--GA-AT
1 TATTTAGTGATAA
119398423 TATTTAGTGATAA
1 TATTTAGTGATAA
119398436 TATTTAGTGATAA
1 TATTTAGTGATAA
119398449 TATTTAG
1 TATTTAG
119398456 AATTATTCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 7 0.18
11 2 0.05
12 2 0.05
13 27 0.71
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:119398441 original size:36 final size:36
Alignment explanation
Indices: 119398400--119398478 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
119398390 AATTTAGAAT
* *
119398400 TATTTAGTGATAATATTTAGAATTATTTAGTGATAA
1 TATTTAGTGATAATATTTAGAATTATTCAGTAATAA
119398436 TATTTAGTGATAATATTTAGAATTATTCAGTAATAA
1 TATTTAGTGATAATATTTAGAATTATTCAGTAATAA
119398472 TATTTAG
1 TATTTAG
119398479 GAAAAATTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (36 bp):
TATTTAGTGATAATATTTAGAATTATTCAGTAATAA
Found at i:119399004 original size:47 final size:47
Alignment explanation
Indices: 119398935--119399033 Score: 144
Period size: 47 Copynumber: 2.1 Consensus size: 47
119398925 TGGCGTATAG
* *
119398935 TTGGGAAGACGAATTGGCCGTGTTGTGTTCGAATCCCCGCGAAGAAA
1 TTGGGAAAACGAATTGGCCGTGTTGTGTTCGAATCCCCGCGAACAAA
* * * *
119398982 TTGGGAAAATGAATTGGCCGTGTTGTGTTTGAATTCCTGCGAACAAA
1 TTGGGAAAACGAATTGGCCGTGTTGTGTTCGAATCCCCGCGAACAAA
119399029 TTGGG
1 TTGGG
119399034 GTGTCTAGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.28
Consensus pattern (47 bp):
TTGGGAAAACGAATTGGCCGTGTTGTGTTCGAATCCCCGCGAACAAA
Found at i:119399432 original size:30 final size:29
Alignment explanation
Indices: 119399406--119399471 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
119399396 TAATTTTGCA
119399406 TTTTTG-AGTATGTTTTTATTTTATTTTAT
1 TTTTTGTA-TATGTTTTTATTTTATTTTAT
* *
119399435 TTTTTGTATATGTTTTT-TTTTTTTTTTT
1 TTTTTGTATATGTTTTTATTTTATTTTAT
119399463 TTTTTGTAT
1 TTTTTGTAT
119399472 TTCCTCCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 18 0.53
29 15 0.44
30 1 0.03
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (29 bp):
TTTTTGTATATGTTTTTATTTTATTTTAT
Found at i:119399436 original size:28 final size:28
Alignment explanation
Indices: 119399405--119399471 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
119399395 TTAATTTTGC
119399405 ATTTTTG-AGTATGTTTTTATTTTATTTT
1 ATTTTTGTA-TATGTTTTTATTTTATTTT
* *
119399433 ATTTTTTGTATATGTTTTTTTTTTTTTTT
1 A-TTTTTGTATATGTTTTTATTTTATTTT
*
119399462 TTTTTTGTAT
1 ATTTTTGTAT
119399472 TTCCTCCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.29
29 23 0.68
30 1 0.03
ACGTcount: A:0.13, C:0.00, G:0.09, T:0.78
Consensus pattern (28 bp):
ATTTTTGTATATGTTTTTATTTTATTTT
Found at i:119403215 original size:20 final size:21
Alignment explanation
Indices: 119403190--119403228 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
119403180 CCGAATGTAC
119403190 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
119403210 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
119403229 TGATTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:119407982 original size:17 final size:17
Alignment explanation
Indices: 119407960--119408002 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
119407950 CATACAGACC
119407960 GTGTGGGCCACACGACT
1 GTGTGGGCCACACGACT
*
119407977 GTGTGGGCCACATGACT
1 GTGTGGGCCACACGACT
119407994 GTGTGGGCC
1 GTGTGGGCC
119408003 TTTTGGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.14, C:0.26, G:0.40, T:0.21
Consensus pattern (17 bp):
GTGTGGGCCACACGACT
Found at i:119411723 original size:64 final size:64
Alignment explanation
Indices: 119411650--119411860 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
119411640 CTGGGCCAGA
*
119411650 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
* * * *** * * *
119411714 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTTAGATAACA---GT
* *
119411776 ACTGGGCCAGA-
54 A-TGGCCCATAG
* * *
119411787 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAATATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
119411851 GCCCATTTCA
1 GCCCATTTCA
119411861 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 24 0.23
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 12 0.12
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTTAGATAACAGTATGGCCCATAG
Found at i:119411812 original size:32 final size:34
Alignment explanation
Indices: 119411776--119411840 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
119411766 TAACAGTGGT
*
119411776 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
119411808 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
119411841 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:119411862 original size:137 final size:137
Alignment explanation
Indices: 119411616--119411902 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
119411606 TATTGGGCCT
**
119411616 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
119411681 AGCCCCTTATTTAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
119411746 CATATGC
131 CATATGC
119411753 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
119411818 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
119411883 CATATGC
131 CATATGC
119411890 AAGCCCATTTGGG
1 AAGCCCATTTGGG
119411903 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:119412215 original size:26 final size:25
Alignment explanation
Indices: 119412159--119412215 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
119412149 CATTTAGGTC
* **
119412159 AATTTAACCCTAGGGGTATTTCAGT
1 AATTTTACCCTAGGGGTATAACAGT
119412184 AATTTTACACCTAGGGGTATAACAGT
1 AATTTTAC-CCTAGGGGTATAACAGT
119412210 AATTTT
1 AATTTT
119412216 CCATACATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (25 bp):
AATTTTACCCTAGGGGTATAACAGT
Done.