Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 412 of 444
Found at i:119608612 original size:16 final size:17
Alignment explanation
Indices: 119608591--119608640 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 17
119608581 TCTTTTATAA
119608591 TTTTTAAAATTCAA-TT
1 TTTTTAAAATTCAATTT
*
119608607 TTTTTAAATTTCTGAATTTT
1 TTTTTAAAATTC--AA-TTT
119608627 TTTTTAAAATTCAA
1 TTTTTAAAATTCAA
119608641 AGAAATTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 11 0.39
18 4 0.14
20 13 0.46
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (17 bp):
TTTTTAAAATTCAATTT
Found at i:119611088 original size:14 final size:14
Alignment explanation
Indices: 119611069--119611106 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
119611059 AAATTATTTA
119611069 TTTTATTAAAAC-AT
1 TTTTA-TAAAACAAT
*
119611083 TTTTATAATACAAT
1 TTTTATAAAACAAT
119611097 TTTTATAAAA
1 TTTTATAAAA
119611107 ATTGATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTATAAAACAAT
Found at i:119611283 original size:41 final size:39
Alignment explanation
Indices: 119611222--119611325 Score: 111
Period size: 41 Copynumber: 2.6 Consensus size: 39
119611212 ACAAAAATTA
* * ** *
119611222 ATAA-TTTTTCACAATCTTTTATGATTTCTAATATTTTTT
1 ATAATTTTTTTACAATATTTTAAAATTTCTAATA-GTTTT
*
119611261 TTAAATTTTTTTACAATATTTTAAAATTTCTAATAGTTTT
1 AT-AATTTTTTTACAATATTTTAAAATTTCTAATAGTTTT
* *
119611301 ATAATTTTTTTAAAATTTTTTAAAA
1 ATAATTTTTTTACAATATTTTAAAA
119611326 AATTACACAT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 22 0.41
40 7 0.13
41 25 0.46
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (39 bp):
ATAATTTTTTTACAATATTTTAAAATTTCTAATAGTTTT
Found at i:119611321 original size:11 final size:10
Alignment explanation
Indices: 119611257--119611325 Score: 52
Period size: 10 Copynumber: 7.0 Consensus size: 10
119611247 TTCTAATATT
*
119611257 TTTTTTAAAT
1 TTTTTTAAAA
*
119611267 TTTTTTACAA
1 TTTTTTAAAA
*
119611277 TATTTTAAAA
1 TTTTTTAAAA
* *
119611287 -TTTCTAATA
1 TTTTTTAAAA
* *
119611296 -GTTTTATAAT
1 TTTTTTA-AAA
119611306 TTTTTTAAAA
1 TTTTTTAAAA
119611316 TTTTTTAAAA
1 TTTTTTAAAA
119611326 AATTACACAT
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
9 10 0.23
10 29 0.66
11 5 0.11
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.59
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:119611378 original size:11 final size:11
Alignment explanation
Indices: 119611297--119611397 Score: 62
Period size: 11 Copynumber: 9.1 Consensus size: 11
119611287 TTTCTAATAG
119611297 TTTTATAATTT
1 TTTTATAATTT
*
119611308 TTTTAAAATTT
1 TTTTATAATTT
* * *
119611319 TTTAAAAAATT
1 TTTTATAATTT
****
119611330 ACACATAATTT
1 TTTTATAATTT
*
119611341 TATTTATATATAT
1 T-TTTATA-ATTT
*
119611354 TTTTGTAA--T
1 TTTTATAATTT
119611363 TTTTATAATTT
1 TTTTATAATTT
119611374 TTTTATAACTTT
1 TTTTATAA-TTT
*
119611386 TTTTATACTTT
1 TTTTATAATTT
119611397 T
1 T
119611398 AAAGATATTT
Statistics
Matches: 68, Mismatches: 17, Indels: 10
0.72 0.18 0.11
Matches are distributed among these distances:
9 8 0.12
11 38 0.56
12 18 0.26
13 4 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:119613510 original size:27 final size:27
Alignment explanation
Indices: 119613480--119613535 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
119613470 TCAAATTATT
* * *
119613480 TTATGCAAATATTTTCTTTTAAATTTA
1 TTATACAAATATTTCCTTTAAAATTTA
* *
119613507 TTATATATATATTTCCTTTAAAATTTA
1 TTATACAAATATTTCCTTTAAAATTTA
119613534 TT
1 TT
119613536 TAAGTACAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATACAAATATTTCCTTTAAAATTTA
Found at i:119624080 original size:37 final size:37
Alignment explanation
Indices: 119624030--119624103 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
119624020 GAAAATCGTG
119624030 GGGAAAATGACTGAGACTTACAAGGATTGGCATGAAA
1 GGGAAAATGACTGAGACTTACAAGGATTGGCATGAAA
119624067 GGGAAAATGACTGAGACTTACAAGGATTGGCATGAAA
1 GGGAAAATGACTGAGACTTACAAGGATTGGCATGAAA
119624104 AGTTACCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.19
Consensus pattern (37 bp):
GGGAAAATGACTGAGACTTACAAGGATTGGCATGAAA
Found at i:119625702 original size:64 final size:64
Alignment explanation
Indices: 119625629--119625750 Score: 208
Period size: 64 Copynumber: 1.9 Consensus size: 64
119625619 ATAACAAATA
119625629 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTACTTAACATAAGCATCACATC
1 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTACTTAACATAAGCATCACATC
* * **
119625693 TAGTTAGGAGCATTTGATTTATTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTACTTAACATAAGCAT
119625751 AGATATATGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (64 bp):
TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTACTTAACATAAGCATCACATC
Found at i:119625866 original size:44 final size:45
Alignment explanation
Indices: 119625818--119626100 Score: 221
Period size: 44 Copynumber: 6.4 Consensus size: 45
119625808 AGAAGTGAAC
* *
119625818 CTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAA-ATGACAAGT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGACAAGT
* * * **
119625862 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGTGAA-T
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-GACAAGT
* *
119625907 CTTAT-TTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT-AAACAGAT
1 CTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAG--ATGACA-AG-T
* * * * **
119625955 CTGATC-TCTCTGAAGTTGCAGTAGAGTAGATT----ATGGCAAAC
1 CTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGATGACAAGT
*
119625996 CTTATCTCCCTGAAGTTGCAGTGGAGCATG-TTGAAG-TGACAAGT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCA-GATTGAAGATGACAAGT
* ** * *
119626040 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTCAATATG-CAAGT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGACAAGT
119626084 CTTATCTTCCTGAAGTT
1 CTTATCTTCCTGAAGTT
119626101 ACAGGAAGCA
Statistics
Matches: 190, Mismatches: 30, Indels: 38
0.74 0.12 0.15
Matches are distributed among these distances:
41 24 0.13
42 5 0.03
43 2 0.01
44 90 0.47
45 36 0.19
46 4 0.02
47 3 0.02
48 26 0.14
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (45 bp):
CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGACAAGT
Found at i:119625920 original size:89 final size:88
Alignment explanation
Indices: 119625805--119626068 Score: 270
Period size: 89 Copynumber: 3.0 Consensus size: 88
119625795 GTAGTAACAT
*
119625805 TGAAGA-AGTGAACCTTATCTT-CCTGAAGTTGTAGTGGAGCAGGTTGAAATGACAAGTCTTATC
1 TGAAGATAGTGAACCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATGACAAGTCTTATC
*
119625868 TCCCTGAAGTTGTAGTGGAGCAGA
65 TCCCTGAAGTTGCAGTGGAGCAGA
* * * *
119625892 CTGAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT-AAACAGATC
1 -TGAAGATAGTGAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAA---ATGACA-AG-TC
* * * *
119625956 TGATCTCTCTGAAGTTGCAGTAGAGTAGA
60 TTATCTCCCTGAAGTTGCAGTGGAGCAGA
* * ** * * *
119625985 T---TATGGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCATGTTGAAGTGACAAGTCTTATCT
1 TGAAGATAGTGAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATGACAAGTCTTATCT
119626047 CCCTGAAGTTGCAGTGGAGCAG
66 CCCTGAAGTTGCAGTGGAGCAG
119626069 GCTCAATATG
Statistics
Matches: 143, Mismatches: 25, Indels: 19
0.76 0.13 0.10
Matches are distributed among these distances:
85 26 0.18
86 3 0.02
87 2 0.01
88 8 0.06
89 71 0.50
91 2 0.01
92 5 0.03
93 26 0.18
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (88 bp):
TGAAGATAGTGAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATGACAAGTCTTATCT
CCCTGAAGTTGCAGTGGAGCAGA
Found at i:119625930 original size:45 final size:45
Alignment explanation
Indices: 119625803--119625942 Score: 162
Period size: 44 Copynumber: 3.2 Consensus size: 45
119625793 GTGTAGTAAC
*
119625803 ATTGAAGA-AGTGAACCTTATCTT-CCTGAAGTTGTAGTGGAGCAG
1 ATTGAAGATAGTGAATCTTAT-TTCCCTGAAGTTGTAGTGGAGCAG
* ** *
119625847 GTTGAA-AT-GACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAG
1 ATTGAAGATAGTGAA-TCTTATTTCCCTGAAGTTGTAGTGGAGCAG
* * *
119625891 ACTGAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAG
1 ATTGAAGATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAGCAG
119625936 ATTGAAG
1 ATTGAAG
119625943 CTATAAACAG
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
43 5 0.06
44 35 0.45
45 35 0.45
46 3 0.04
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (45 bp):
ATTGAAGATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAGCAG
Found at i:119626329 original size:45 final size:45
Alignment explanation
Indices: 119626251--119626360 Score: 125
Period size: 45 Copynumber: 2.4 Consensus size: 45
119626241 AGGTTGAAGG
* * * *
119626251 TACAAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAATT
1 TACAAGTCTTATCTCCCTGAAGTAGCAAGAAAGCAGACTCAAAAT
* *
119626296 TAC-AGATCTTATCTCCCTGAAGTTGC-AGTAAAGCAGGCTCAAAAT
1 TACAAG-TCTTATCTCCCTGAAGTAGCAAG-AAAGCAGACTCAAAAT
*
119626341 TACAAGTTTTATCTCCCTGA
1 TACAAGTCTTATCTCCCTGA
119626361 GGTCGCAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
44 4 0.07
45 49 0.89
46 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (45 bp):
TACAAGTCTTATCTCCCTGAAGTAGCAAGAAAGCAGACTCAAAAT
Found at i:119627953 original size:27 final size:27
Alignment explanation
Indices: 119627923--119627978 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
119627913 TCAAATTATT
* * *
119627923 TTATGCAAATATTTTCTTTTAAATTTA
1 TTATACAAATATTTCCTTTAAAATTTA
* *
119627950 TTATATATATATTTCCTTTAAAATTTA
1 TTATACAAATATTTCCTTTAAAATTTA
119627977 TT
1 TT
119627979 TAAGTACAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATACAAATATTTCCTTTAAAATTTA
Found at i:119628511 original size:50 final size:50
Alignment explanation
Indices: 119628454--119628553 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
119628444 TTTTACCCTA
119628454 AAGTAAACCAAACGAATGTATTTTGAGCCGGTTTCATAATTGCTTATTTG
1 AAGTAAACCAAACGAATGTATTTTGAGCCGGTTTCATAATTGCTTATTTG
*
119628504 AAGTAAACCAAACGAATGTATTTTGAGCTGGTTTCATAATTGCTTATTTG
1 AAGTAAACCAAACGAATGTATTTTGAGCCGGTTTCATAATTGCTTATTTG
119628554 GAAGCTCTTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (50 bp):
AAGTAAACCAAACGAATGTATTTTGAGCCGGTTTCATAATTGCTTATTTG
Found at i:119634091 original size:1 final size:1
Alignment explanation
Indices: 119634085--119634111 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
119634075 AAAGGTAACC
119634085 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
119634112 AGGGTGGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:119635836 original size:127 final size:128
Alignment explanation
Indices: 119635698--119636021 Score: 508
Period size: 129 Copynumber: 2.5 Consensus size: 128
119635688 AGTCCAACAA
*
119635698 AAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTG-
* *
119635763 TTT-AGAATTT-ATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTTGAACAAACCG
65 TTTCAGAATTTAAAAAAACACGAGTGAAATTCTAAAGGAACATTCAATTATTTTGAACAAACCG
*
119635825 AAAATCAAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGT
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGT
* * **
119635890 TTCAGAATTTGAAAAAAATACGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAATGG
66 TTCAGAATTT-AAAAAAACACGAGTGAAATTCTAAAGGAACATTCAATTATTTTGAACAAACCG
* * *
119635954 GAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTAAACATTGCCTTTG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCC-TTG
119636019 TTT
65 TTT
119636022 TAAGGAAATT
Statistics
Matches: 181, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
126 3 0.02
127 69 0.38
129 103 0.57
130 6 0.03
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (128 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGT
TTCAGAATTTAAAAAAACACGAGTGAAATTCTAAAGGAACATTCAATTATTTTGAACAAACCG
Found at i:119636232 original size:24 final size:23
Alignment explanation
Indices: 119636193--119636237 Score: 81
Period size: 24 Copynumber: 1.9 Consensus size: 23
119636183 ATACAATGCC
119636193 AATTAACAAACTAATAATTAACA
1 AATTAACAAACTAATAATTAACA
119636216 AATTAACAAAACTAATAATTAA
1 AATTAAC-AAACTAATAATTAA
119636238 GTATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (23 bp):
AATTAACAAACTAATAATTAACA
Found at i:119641677 original size:9 final size:9
Alignment explanation
Indices: 119641650--119641684 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
119641640 TTTGTGAAAA
119641650 AAAAT-AAT
1 AAAATAAAT
119641658 AAAATAGAAT
1 AAAATA-AAT
119641668 AAAATAAAT
1 AAAATAAAT
119641677 AAAATAAA
1 AAAATAAA
119641685 GAACACACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 5 0.20
9 11 0.44
10 9 0.36
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (9 bp):
AAAATAAAT
Found at i:119646803 original size:47 final size:49
Alignment explanation
Indices: 119646681--119646860 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
119646671 TGTAACCCGC
* * * *
119646681 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
119646727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
119646777 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
119646821 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
119646861 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:119646849 original size:94 final size:93
Alignment explanation
Indices: 119646689--119646860 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
119646679 GCCCATAAGT
* * *
119646689 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
119646754 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
119646782 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
119646847 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
119646861 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:119648794 original size:44 final size:44
Alignment explanation
Indices: 119648649--119648806 Score: 138
Period size: 44 Copynumber: 3.6 Consensus size: 44
119648639 CTTTGATCCA
* * *
119648649 CTCCACTGCAACTTCAGGGAGATAATAATCGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGAAGATAAGAATTGTAACTTCAACCTG
* * ** ** * * *
119648693 CCCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTA
1 CTCCACTGCAACTTCAGGAAGATAAGAATTGTAACTTCAACCTG
* * ** * *
119648737 TTCTACTATAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
1 CTCCACTGCAACTTCAGGAAGATAAGAATTGTAACTTCAACCTG
119648781 CTCCACTGCAACTTCA-GAGAGATAAG
1 CTCCACTGCAACTTCAGGA-AGATAAG
119648807 GTTAATGGCT
Statistics
Matches: 86, Mismatches: 27, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
43 2 0.02
44 84 0.98
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGAAGATAAGAATTGTAACTTCAACCTG
Found at i:119648838 original size:88 final size:87
Alignment explanation
Indices: 119648648--119648851 Score: 237
Period size: 88 Copynumber: 2.3 Consensus size: 87
119648638 GCTTTGATCC
* *
119648648 ACTCCACTGCAACTTCAGGGAGATAATAATCGTAACTTCAACCTGCCCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCA-GGAGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTCAGAGA
** *
119648713 GATAAGGTTTGTGGCTTTAATCT
65 GATAAGGTTAATGGCTTCAATCT
* * ** * * * *
119648736 ATTCTACTATAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTCAGAGA
1 ACTCCACTGCAACTTCAGG-AGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTCAGAGA
*
119648801 GATAAGGTTAATGGCTTCCATCT
65 GATAAGGTTAATGGCTTCAATCT
* *
119648824 GCTCCACTGCAACTTTAAGGAGATAAGA
1 ACTCCACTGCAAC-TTCAGGAGATAAGA
119648852 TTTGCCATGA
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
87 2 0.02
88 87 0.93
89 5 0.05
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (87 bp):
ACTCCACTGCAACTTCAGGAGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTCAGAGAG
ATAAGGTTAATGGCTTCAATCT
Found at i:119649074 original size:43 final size:43
Alignment explanation
Indices: 119648938--119649081 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 43
119648928 CCTTTGTAAT
*
119648938 TTCAGGGGGATAAGACTTGTAACTTTAACCTATTCCTTGCAAC
1 TTCAGGGAGATAAGACTTGTAACTTTAACCTATTCCTTGCAAC
* * * * * * ** * * * *
119648981 TTCAAGGAAATAAGATTTACTATCTTCAGTCTGTCTCGTTGTAAT
1 TTCAGGGAGATAAGACTT-GTAACTTTAACCTAT-TCCTTGCAAC
*
119649026 TTCAGGGGGATAAGACTTGTAACTTTAACCTATTCCTTGCAAC
1 TTCAGGGAGATAAGACTTGTAACTTTAACCTATTCCTTGCAAC
119649069 TTCAGGGAGATAA
1 TTCAGGGAGATAA
119649082 AGTTAGTGGC
Statistics
Matches: 72, Mismatches: 27, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 33 0.46
44 18 0.25
45 21 0.29
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (43 bp):
TTCAGGGAGATAAGACTTGTAACTTTAACCTATTCCTTGCAAC
Found at i:119649256 original size:45 final size:44
Alignment explanation
Indices: 119649199--119649312 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
119649189 AATCCGCTCT
* * *
119649199 ACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAGTCTGCCCC
1 ACTGCAACTTTAGGGAGATAAGATTTG-TAACTTCAGCCTGCCCC
* * * * *
119649244 ACTGCAATTTTAGGGGGATAAGACTTGTAACTTTAGCCTGCTCC
1 ACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAGCCTGCCCC
*
119649288 ACTGCAACTTCAGGGAGATAAGATT
1 ACTGCAACTTTAGGGAGATAAGATT
119649313 CGCCATAATT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
44 34 0.60
45 23 0.40
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAGCCTGCCCC
Found at i:119651361 original size:16 final size:17
Alignment explanation
Indices: 119651330--119651362 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119651320 TTCATAAGTA
119651330 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
119651347 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
119651363 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:119651708 original size:46 final size:46
Alignment explanation
Indices: 119651643--119652050 Score: 527
Period size: 46 Copynumber: 8.9 Consensus size: 46
119651633 TTATCTTTGA
* * * * * * * *
119651643 CATGATGCCATAGTGTCTTTCGACTATAGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *** *
119651689 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* ** ** * *
119651735 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
119651780 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
119651826 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
119651872 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
119651918 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
119651964 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
119652010 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
119652051 CATTTCAGAA
Statistics
Matches: 323, Mismatches: 33, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
45 44 0.14
46 273 0.85
47 6 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:119651904 original size:92 final size:92
Alignment explanation
Indices: 119651648--119652053 Score: 584
Period size: 92 Copynumber: 4.4 Consensus size: 92
119651638 TTTGACATGA
* * * * * * * *
119651648 TGCCATAGTGTCTTTCGACTATAGTCTTACTCATTTTC-TGTCAGGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAA
*** * * * *
119651712 CCATGGTCTTGTTCATTTCATGTTAC-AT
65 CCATGGTCTTACACATTTTAT-ATCCTGT
** **
119651740 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
119651804 CATGGTCTTACACATTTTATATCCTGT
66 CATGGTCTTACACATTTTATATCCTGT
119651831 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
119651896 CATGGTCTTACACATTTTATATCCTGT
66 CATGGTCTTACACATTTTATATCCTGT
119651923 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
*
119651988 CATGGTCTTACACATTTTATATCATGT
66 CATGGTCTTACACATTTTATATCCTGT
*
119652015 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
119652054 TTCAGAAAGC
Statistics
Matches: 289, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
90 5 0.02
91 72 0.25
92 212 0.73
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTTATATCCTGT
Found at i:119666545 original size:21 final size:20
Alignment explanation
Indices: 119666519--119666558 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
119666509 ACATGTAATC
*
119666519 CTTTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTCTTTTT-TTTTT
119666540 CTTTTTTCTCTTTTTTTTT
1 CTTTTTTCTCTTTTTTTTT
119666559 GAATGCCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (20 bp):
CTTTTTTCTCTTTTTTTTTT
Found at i:119666546 original size:19 final size:19
Alignment explanation
Indices: 119666522--119666558 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
119666512 TGTAATCCTT
119666522 TTTTTTCT-TTTTCTTTTTC
1 TTTTTTCTCTTTT-TTTTTC
119666541 TTTTTTCTCTTTTTTTTT
1 TTTTTTCTCTTTTTTTTT
119666559 GAATGCCGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTCTCTTTTTTTTTC
Found at i:119668810 original size:37 final size:37
Alignment explanation
Indices: 119668757--119668878 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
119668747 TTATAAAAAA
*
119668757 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
119668794 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
119668831 GTCTTACCCGGTCATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
119668868 GTCTCACCCGG
1 GTCTTACCCGG
119668879 AACATATTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:119669242 original size:49 final size:47
Alignment explanation
Indices: 119668980--119669241 Score: 429
Period size: 47 Copynumber: 5.5 Consensus size: 47
119668970 TTTTACATTA
119668980 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCACCACATCG
*
119669029 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCACCACATCG
119669078 GCCATTAGGCCTTATCAC--ATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
119669123 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
* *
119669170 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
* *
119669217 GCCATTTGGCCTTATCACACATATA
1 GCCATTAGGCCTTATCACATATATA
119669242 TGTATATCAT
Statistics
Matches: 205, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
45 43 0.21
47 97 0.47
49 65 0.32
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
Found at i:119673954 original size:44 final size:44
Alignment explanation
Indices: 119673900--119674009 Score: 168
Period size: 44 Copynumber: 2.5 Consensus size: 44
119673890 AGTCTGCTTC
* *
119673900 CTTGCTACCTCAGGAAGATAAGACTTGTATCTTCGACCTGCGCT
1 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTGCGCT
* *
119673944 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACTTGCTCT
1 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTGCGCT
119673988 CTTGCTACCTCA-GAGAGATAAG
1 CTTGCTACCTCAGGA-AGATAAG
119674010 GTTGGTGGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 2 0.03
44 59 0.97
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTGCGCT
Found at i:119674110 original size:45 final size:44
Alignment explanation
Indices: 119674023--119674119 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 44
119674013 GGTGGCTAAA
* * *
119674023 ATCTGCTCCATAGCAGATACATGGATATAAGACTTGCCATTTTT
1 ATCTGCTCCATAACAGATACATGGAGATAAGACTTGCAATTTTT
* * *
119674067 GATCTGCTCTATAACCGATACATGGAGATAAGA-TCTGTAATTTTT
1 -ATCTGCTCCATAACAGATACATGGAGATAAGACT-TGCAATTTTT
119674112 AGTCTGCT
1 A-TCTGCT
119674120 TCCTTGTTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
ATCTGCTCCATAACAGATACATGGAGATAAGACTTGCAATTTTT
Found at i:119674170 original size:178 final size:178
Alignment explanation
Indices: 119673944--119674291 Score: 518
Period size: 178 Copynumber: 2.0 Consensus size: 178
119673934 GACCTGCGCT
* *
119673944 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAA
1 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAA
** * * ** ***
119674009 GGTTGGTGGCTAAAATCTGCTCCATAG-CAGATACATGGATATAAGACTTGCCATTTTTGATCTG
66 GACTGGTGGCTAAAATCTACTCCATAGTC-GATACATGGAGATAAGACTCACCATTTCCAATCTG
*
119674073 CTCTATAACCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTC
130 CTCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTC
* * * *
119674122 CTTGTTACCTCAGGAATATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAC
1 CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAA
119674187 GACTGGTGGCTAAAATCTACTCCATAGTCGATACATGGAGATAAGACTCACCATTTCCAATCTGC
66 GACTGGTGGCTAAAATCTACTCCATAGTCGATACATGGAGATAAGACTCACCATTTCCAATCTGC
* *
119674252 TCCATAGCTGATACATGGAGATAAGATCTGTAATTTTTAG
131 TCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAG
119674292 CCTATTACCC
Statistics
Matches: 151, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
178 150 0.99
179 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (178 bp):
CTTGCTACCTCAGGAAGATAAGAATTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAA
GACTGGTGGCTAAAATCTACTCCATAGTCGATACATGGAGATAAGACTCACCATTTCCAATCTGC
TCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTC
Found at i:119675773 original size:20 final size:20
Alignment explanation
Indices: 119675750--119675789 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
119675740 AGGCCTTCTG
*
119675750 TATTATATAAGGTCCTTCCT
1 TATTACATAAGGTCCTTCCT
119675770 TATTACATAAGGTCCTTCCT
1 TATTACATAAGGTCCTTCCT
119675790 AGTTTGGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (20 bp):
TATTACATAAGGTCCTTCCT
Found at i:119684503 original size:19 final size:19
Alignment explanation
Indices: 119684461--119684503 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
119684451 TTGTGAATTT
* *
119684461 TAATGCATATGATGCAATG
1 TAATGCAGATGATGAAATG
119684480 TAATGCAGATGTATGAAATG
1 TAATGCAGATG-ATGAAATG
119684500 -AATG
1 TAATG
119684504 AAAAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (19 bp):
TAATGCAGATGATGAAATG
Found at i:119694733 original size:19 final size:17
Alignment explanation
Indices: 119694682--119694750 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 17
119694672 ATATGTAATG
119694682 ATAATATTTA-TACAATT
1 ATAATATTTATTA-AATT
119694699 ATAATATTTTATTTAAATT
1 ATAATA-TTTA-TTAAATT
119694718 AGTAGATATTTATT-AATT
1 A-TA-ATATTTATTAAATT
* *
119694736 A-AATAATTATAAAAT
1 ATAATATTTATTAAAT
119694751 AAGATTTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
15 7 0.16
16 4 0.09
17 6 0.14
18 9 0.20
19 7 0.16
20 8 0.18
21 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (17 bp):
ATAATATTTATTAAATT
Found at i:119694980 original size:12 final size:12
Alignment explanation
Indices: 119694964--119695007 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
119694954 AAAACAGGGG
119694964 AGAAAAAGAGAA
1 AGAAAAAGAGAA
* *
119694976 GGAAAAAGGGAA
1 AGAAAAAGAGAA
*
119694988 AGAAAAAGAAAAA
1 AGAAAAAG-AGAA
119695001 AGAAAAA
1 AGAAAAA
119695008 CTAGAGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:119702616 original size:13 final size:13
Alignment explanation
Indices: 119702600--119702649 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
119702590 TTTAAACTAA
119702600 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
119702613 ACTTCTT-AGAAGC
1 ACTT-TTCAAAAGC
* *
119702626 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
119702639 ACTTTTCAAAA
1 ACTTTTCAAAA
119702650 ACATTGTCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
12 2 0.07
13 25 0.86
14 2 0.07
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:119705305 original size:18 final size:18
Alignment explanation
Indices: 119705282--119705318 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
119705272 CAATTTGGGC
*
119705282 CGTGTGGGCTTACACGGG
1 CGTGTGGGCTCACACGGG
119705300 CGTGTGGGCTCACACGGG
1 CGTGTGGGCTCACACGGG
119705318 C
1 C
119705319 AGATCACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (18 bp):
CGTGTGGGCTCACACGGG
Found at i:119707562 original size:18 final size:18
Alignment explanation
Indices: 119707539--119707574 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
119707529 GAGGTAGGAA
119707539 TAAGAGGGAATCGAAGCT
1 TAAGAGGGAATCGAAGCT
119707557 TAAGAGGGAATCGAAGCT
1 TAAGAGGGAATCGAAGCT
119707575 CTTGAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.33, T:0.17
Consensus pattern (18 bp):
TAAGAGGGAATCGAAGCT
Found at i:119709649 original size:46 final size:47
Alignment explanation
Indices: 119709588--119709703 Score: 153
Period size: 47 Copynumber: 2.5 Consensus size: 47
119709578 CTTCACATAA
* * * *
119709588 TGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * *
119709634 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
*
119709681 CGATGCCATATCCCAGATATGGT
1 TGATGCCATATCCCAGATATGGT
119709704 TTTATATGGA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
46 27 0.44
47 34 0.56
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:119709764 original size:31 final size:31
Alignment explanation
Indices: 119709729--119709846 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
119709719 CTTGTCACTT
*
119709729 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
119709760 GTAGCCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119709791 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119709822 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
119709847 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:119709928 original size:50 final size:51
Alignment explanation
Indices: 119709822--119709950 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
119709812 CACTGATCAG
* * * * *
119709822 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGACCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTACTTGACCAGATAAGT
*
119709873 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTACTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTACTTGACCAGATAAGT
* *
119709923 GTAGCCGAAGATATCACTCATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
119709951 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 45 0.65
51 24 0.35
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTACTTGACCAGATAAGT
Found at i:119711349 original size:26 final size:26
Alignment explanation
Indices: 119711316--119711366 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
119711306 AACACAAAAA
119711316 TTTTAAGAAATAATCAAGAATTGAAT
1 TTTTAAGAAATAATCAAGAATTGAAT
*
119711342 TTTTAAGAAATAATCAAGAGTTGAA
1 TTTTAAGAAATAATCAAGAATTGAA
119711367 CTTACTTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (26 bp):
TTTTAAGAAATAATCAAGAATTGAAT
Found at i:119718299 original size:565 final size:565
Alignment explanation
Indices: 119717230--119718350 Score: 2064
Period size: 565 Copynumber: 2.0 Consensus size: 565
119717220 TCACTAACAA
119717230 AAGATCTTTCATTTTTTTCTGCCAAAGTTGATAATTTGTCATTCAATATAATCATCTTACTAATG
1 AAGATCTTTCATTTTTTTCTGCCAAAGTTGATAATTTGTCATTCAATATAATCATCTTACTAATG
*
119717295 ATAATTTACATGATTACTAAACACGAAAATCAAGCTCTGATACCATTTTGTTAGAATGAAATTGA
66 ATAATTTACATGATTACTAAACACAAAAATCAAGCTCTGATACCATTTTGTTAGAATGAAATTGA
*
119717360 ACTCGATGAAACAATGTAGAAGCACAATCAATGTTCTTTCACTCCCTATAAATCAATTTGGTAAT
131 ACTCGATGAAACAATATAGAAGCACAATCAATGTTCTTTCACTCCCTATAAATCAATTTGGTAAT
*
119717425 TATGGCAAACCGAATAATACAATATATCAACAATTAACGCAAATCAACCACAATATCATAAAATA
196 TATGGCAAACCGAATAATACAATATATCAACAATCAACGCAAATCAACCACAATATCATAAAATA
119717490 ATAATAATAAATCGAAACACAAAATTTTTACATAGAGAACCCCTTTAAAGCAAAGGGTAAAACTA
261 ATAATAATAAATCGAAACACAAAATTTTTACATAGAGAACCCCTTTAAAGCAAAGGGTAAAACTA
119717555 CAGAACTTGAAAGTACGCCAAAATTTTCACTATAATCAGAGTCTTGCTATAAGATCACAACCAAG
326 CAGAACTTGAAAGTACGCCAAAATTTTCACTATAATCAGAGTCTTGCTATAAGATCACAACCAAG
*
119717620 CCACCATAAAGAGTATACAACTCAAACAAGACTAAAGCAAACTTTAGAGAAAAGTTGAGAATATC
391 CCACCATAAAGAGTATACAACTCAAACAAGACTAAAGCAAACTTAAGAGAAAAGTTGAGAATATC
* * *
119717685 ACAAAAAGAGGTTGACTTTAAAAGTTAAAAATCGCGAAGCTATAGTATATCAAACGAAAATCTGA
456 ACAAAAAGAGGTTGACTTTAAAAGTGAAAAATCGCAAAGCTATAGTATATCAAACGAAAATCAGA
*
119717750 CCGTACACATTAAATATCTTCAAGTCTACTAGATACTTGAAATTG
521 CCATACACATTAAATATCTTCAAGTCTACTAGATACTTGAAATTG
119717795 AAGATCTTTCATTTTTTTCTGCCAAAGTTGATAATTTGTCATTCAATATAATCATCTTACTAATG
1 AAGATCTTTCATTTTTTTCTGCCAAAGTTGATAATTTGTCATTCAATATAATCATCTTACTAATG
* *
119717860 ATAATTTTCATGATTACTAAACACAAAAATCAATCTCTGATACCATTTTGTTAGAATGAAATTGA
66 ATAATTTACATGATTACTAAACACAAAAATCAAGCTCTGATACCATTTTGTTAGAATGAAATTGA
*
119717925 ACTCGATGAAACAATATAGAAGCACAATCAGTGTTCTTTCACTCCCTATAAATCAATTTGGTAAT
131 ACTCGATGAAACAATATAGAAGCACAATCAATGTTCTTTCACTCCCTATAAATCAATTTGGTAAT
* *
119717990 TATGGCAAACCGAATAATACAATATATCAATAATCAACGCAAATCAACCACAATATCGTAAAATA
196 TATGGCAAACCGAATAATACAATATATCAACAATCAACGCAAATCAACCACAATATCATAAAATA
* * * *
119718055 ATAATAATAAATTGAAACAC-ACATTTTTACATGGAGAACCCCTTTAAAGCGAAGGGTAAAAACT
261 ATAATAATAAATCGAAACACAAAATTTTTACATAGAGAACCCCTTTAAAGCAAAGGGT-AAAACT
119718119 ACAGAACTTGAAAGTACGCCAAAATTTTCACTATAATCAGAGTCTTGCTATAAGATCACAACCAA
325 ACAGAACTTGAAAGTACGCCAAAATTTTCACTATAATCAGAGTCTTGCTATAAGATCACAACCAA
119718184 GCCACCATAAAGAGTATACAACTCAAACAAGACTAAAGCAAACTTAAGAGAAAAGTTGAGAATAT
390 GCCACCATAAAGAGTATACAACTCAAACAAGACTAAAGCAAACTTAAGAGAAAAGTTGAGAATAT
119718249 CACAAAAAGAGGTTGACTTTAAAAGTGAAAAATCGCAAAGCTATAGTATATCAAACGAAAATCAG
455 CACAAAAAGAGGTTGACTTTAAAAGTGAAAAATCGCAAAGCTATAGTATATCAAACGAAAATCAG
*
119718314 GCCATACACATTAAATATCTTCAAGTCTACTAGATAC
520 ACCATACACATTAAATATCTTCAAGTCTACTAGATAC
119718351 AATAAAAAAT
Statistics
Matches: 537, Mismatches: 18, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
564 34 0.06
565 503 0.94
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (565 bp):
AAGATCTTTCATTTTTTTCTGCCAAAGTTGATAATTTGTCATTCAATATAATCATCTTACTAATG
ATAATTTACATGATTACTAAACACAAAAATCAAGCTCTGATACCATTTTGTTAGAATGAAATTGA
ACTCGATGAAACAATATAGAAGCACAATCAATGTTCTTTCACTCCCTATAAATCAATTTGGTAAT
TATGGCAAACCGAATAATACAATATATCAACAATCAACGCAAATCAACCACAATATCATAAAATA
ATAATAATAAATCGAAACACAAAATTTTTACATAGAGAACCCCTTTAAAGCAAAGGGTAAAACTA
CAGAACTTGAAAGTACGCCAAAATTTTCACTATAATCAGAGTCTTGCTATAAGATCACAACCAAG
CCACCATAAAGAGTATACAACTCAAACAAGACTAAAGCAAACTTAAGAGAAAAGTTGAGAATATC
ACAAAAAGAGGTTGACTTTAAAAGTGAAAAATCGCAAAGCTATAGTATATCAAACGAAAATCAGA
CCATACACATTAAATATCTTCAAGTCTACTAGATACTTGAAATTG
Found at i:119720332 original size:21 final size:22
Alignment explanation
Indices: 119720301--119720359 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
119720291 TTAATAAGAC
* *
119720301 TATATTATTATTTTAATTATAT
1 TATAATATTATTTTAATGATAT
*
119720323 TATAAT-TTATATTAATGATAT
1 TATAATATTATTTTAATGATAT
119720344 TATAATATTATTTTAA
1 TATAATATTATTTTAA
119720360 CAATTGTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TATAATATTATTTTAATGATAT
Found at i:119720463 original size:21 final size:21
Alignment explanation
Indices: 119720439--119720484 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
119720429 TTACTTAAAA
119720439 TATAAGAAATTGTTATTATAT
1 TATAAGAAATTGTTATTATAT
** * *
119720460 TATATTATATTTTTATTATAT
1 TATAAGAAATTGTTATTATAT
119720481 TATA
1 TATA
119720485 TTATATATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
TATAAGAAATTGTTATTATAT
Found at i:119720476 original size:16 final size:17
Alignment explanation
Indices: 119720455--119720497 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 17
119720445 AAATTGTTAT
119720455 TATATTATATTATATT-
1 TATATTATATTATATTA
*
119720471 TTTATTATATTATATTA
1 TATATTATATTATATTA
119720488 TATATTATAT
1 TATATTATAT
119720498 AAATAAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 15 0.62
17 9 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATATTATATTATATTA
Found at i:119720485 original size:21 final size:21
Alignment explanation
Indices: 119720451--119720490 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
119720441 TAAGAAATTG
119720451 TTATTATATTATATTATATTT
1 TTATTATATTATATTATATTT
119720472 TTATTATATTATATTATAT
1 TTATTATATTATATTATAT
119720491 ATTATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATTATATTATATTATATTT
Found at i:119720497 original size:5 final size:5
Alignment explanation
Indices: 119720452--119720490 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
119720442 AAGAAATTGT
*
119720452 TATTA TATTA TATTA TATTTT TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TA-TTA TATTA TATTA TATTA TAT
119720491 ATTATATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:119722254 original size:45 final size:45
Alignment explanation
Indices: 119722204--119722316 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 45
119722194 CGACCACTGT
* *
119722204 TACTGTTACAGTTACTGTTACTGATTCGGCACTTGGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACTGATTCAGCACTTGGTGTGTCGAA
* * * * *
119722249 TACTGTTATTGTTACCGTTA-TCAATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACT-GATTCAGCACTTGGTGTGTCGAA
119722294 TACTGTTACTGTTACTGTTACTG
1 TACTGTTACTGTTACTGTTACTG
119722317 TTACTGTTCT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.96
46 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACTGATTCAGCACTTGGTGTGTCGAA
Found at i:119722305 original size:6 final size:6
Alignment explanation
Indices: 119722294--119722324 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
119722284 GTGTGTTGAA
119722294 TACTGT TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT T
119722325 CTGGATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:119722540 original size:36 final size:36
Alignment explanation
Indices: 119722499--119722672 Score: 165
Period size: 36 Copynumber: 4.8 Consensus size: 36
119722489 ATAACTGATA
* *
119722499 ATTACTGAATAATTGATTGTTACCGAATAATTGACT
1 ATTACTGAATAACTGATTGTTACTGAATAATTGACT
* * *
119722535 GTTACTGAATAACTGAATATTACTGAATAATTGA-T
1 ATTACTGAATAACTGATTGTTACTGAATAATTGACT
* *
119722570 CATTACTGAATAACTGATTGTCACTGAATAAATGACT
1 -ATTACTGAATAACTGATTGTTACTGAATAATTGACT
* * * *
119722607 ATTACTGAATAACTTAATTGCTATTGAAT-ATCTGAAT
1 ATTACTGAATAAC-TGATTGTTACTGAATAAT-TGACT
* * * *
119722644 -TTACTAAATAATTGACTGTTACTGGATAA
1 ATTACTGAATAACTGATTGTTACTGAATAA
119722673 CCGATCAATT
Statistics
Matches: 110, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
35 11 0.10
36 83 0.75
37 16 0.15
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
ATTACTGAATAACTGATTGTTACTGAATAATTGACT
Found at i:119722557 original size:54 final size:54
Alignment explanation
Indices: 119722488--119722618 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
119722478 AAAGGTATAA
** * *
119722488 AATAACTG-ATAATTACTGAATAATTGATTGTTACCGAATAATTGACTGTTACTG
1 AATAACTGAAT-ATTACTGAATAATTGATCATTACCGAATAACTGACTGTCACTG
* *
119722542 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTG
1 AATAACTGAATATTACTGAATAATTGATCATTACCGAATAACTGACTGTCACTG
* *
119722596 AATAAATGACTATTACTGAATAA
1 AATAACTGAATATTACTGAATAA
119722619 CTTAATTGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 66 0.97
55 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (54 bp):
AATAACTGAATATTACTGAATAATTGATCATTACCGAATAACTGACTGTCACTG
Found at i:119722672 original size:18 final size:18
Alignment explanation
Indices: 119722500--119722672 Score: 136
Period size: 18 Copynumber: 9.6 Consensus size: 18
119722490 TAACTGATAA
*
119722500 TTACTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
119722518 TTACCGAATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
119722536 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
119722554 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
119722572 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* * *
119722590 TCACTGAATAAATGACTA
1 TTACTGAATAATTGACTG
* *
119722608 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
* * *
119722627 CTATTGAAT-ATCTGAAT-
1 TTACTGAATAAT-TGACTG
*
119722644 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
*
119722662 TTACTGGATAA
1 TTACTGAATAA
119722673 CCGATCAATT
Statistics
Matches: 121, Mismatches: 28, Indels: 12
0.75 0.17 0.07
Matches are distributed among these distances:
17 12 0.10
18 98 0.81
19 11 0.09
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:119727098 original size:46 final size:46
Alignment explanation
Indices: 119727044--119727408 Score: 554
Period size: 46 Copynumber: 8.0 Consensus size: 46
119727034 GCTCTTTGAA
*
119727044 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCGACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
119727090 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
119727136 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
119727182 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
119727228 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
119727274 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** *
119727320 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
119727366 A-GAAAAGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
119727409 TCAAAGATAA
Statistics
Matches: 298, Mismatches: 19, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
45 36 0.12
46 261 0.88
47 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:119728008 original size:26 final size:26
Alignment explanation
Indices: 119727972--119728081 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
119727962 TGATACAAAT
119727972 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
119727998 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
119728024 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
119728050 TGATAAT-GGATTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
119728076 TGATAA
1 TGATAA
119728082 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 2 0.02
26 79 0.98
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:119729743 original size:27 final size:27
Alignment explanation
Indices: 119729702--119729841 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
119729692 GAGGAAGCGT
* *
119729702 TCTGGTGGCTATGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
119729729 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
119729756 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
119729783 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
119729811 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
119729837 TCTGG
1 TCTGG
119729842 CAGCCATGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 81 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:119729787 original size:54 final size:55
Alignment explanation
Indices: 119729702--119729841 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
119729692 GAGGAAGCGT
* * * *
119729702 TCTGGTGGCTATGCCACAAATATTTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
119729756 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
119729811 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
119729842 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:119742083 original size:29 final size:28
Alignment explanation
Indices: 119742009--119742085 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 28
119741999 TTTATTAATA
*
119742009 TAAAATTTAAAT-TTATTATTATATTTT
1 TAAAATTTATATATTATTATTATATTTT
** *
119742036 TAAAAAATATGTATGTATT-TTATATATTT
1 TAAAATTTATATAT-TATTATTATAT-TTT
119742065 TAAAATTTTATATATTATTAT
1 TAAAA-TTTATATATTATTAT
119742086 ATCTTGTTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
27 8 0.21
28 7 0.18
29 16 0.42
30 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (28 bp):
TAAAATTTATATATTATTATTATATTTT
Found at i:119742169 original size:18 final size:18
Alignment explanation
Indices: 119742101--119742182 Score: 55
Period size: 18 Copynumber: 4.6 Consensus size: 18
119742091 GTTAGCAATC
119742101 ATTT-TTTTTATATATATT
1 ATTTATTTTTATATAT-TT
**
119742119 -TTTAAATTTAT-TATTTT
1 ATTTATTTTTATATA-TTT
* *
119742136 ATTT-TTTTGAAAATATTT
1 ATTTATTTT-TATATATTT
119742154 ATTTATTTTTATATATTT
1 ATTTATTTTTATATATTT
*
119742172 CTTTAATTTTT
1 ATTT-ATTTTT
119742183 CTAAAATTAG
Statistics
Matches: 48, Mismatches: 9, Indels: 13
0.69 0.13 0.19
Matches are distributed among these distances:
17 9 0.19
18 27 0.56
19 12 0.25
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (18 bp):
ATTTATTTTTATATATTT
Found at i:119746238 original size:19 final size:21
Alignment explanation
Indices: 119746191--119746234 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
119746181 GACATCATTC
119746191 TTAAATGTACTGCATTGCAATGAA
1 TTAAATGTACTGCATTGC-A--AA
119746215 TTAAATGTACTGCATTGCAA
1 TTAAATGTACTGCATTGCAA
119746235 TAAAGGATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.05
23 1 0.05
24 18 0.90
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (21 bp):
TTAAATGTACTGCATTGCAAA
Found at i:119756702 original size:25 final size:25
Alignment explanation
Indices: 119756673--119756721 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
119756663 TGAGCTTAAA
*
119756673 AAATATCCATTATATAGTTGTTGAT
1 AAATAGCCATTATATAGTTGTTGAT
119756698 AAATAGCCATTATATAGTTGTTGA
1 AAATAGCCATTATATAGTTGTTGA
119756722 CATGCCATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (25 bp):
AAATAGCCATTATATAGTTGTTGAT
Found at i:119762096 original size:45 final size:43
Alignment explanation
Indices: 119762046--119762143 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 43
119762036 TTGATTATAC
*
119762046 TTTGTAATACTTTATTTTTGTTATAATTGATTTGGTTATACATTA
1 TTTGTAATA--TTATTTTTGTTATAATTGATTTGGATATACATTA
119762091 TTTGTAGAGTATTATTTTTGTTATAATTGATTTGGATATACATTA
1 TTTGTA-A-TATTATTTTTGTTATAATTGATTTGGATATACATTA
*
119762136 TTTATAAT
1 TTTGTAAT
119762144 TATACATGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
43 1 0.02
44 1 0.02
45 44 0.90
46 1 0.02
47 2 0.04
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.56
Consensus pattern (43 bp):
TTTGTAATATTATTTTTGTTATAATTGATTTGGATATACATTA
Found at i:119762991 original size:7 final size:7
Alignment explanation
Indices: 119762981--119763020 Score: 62
Period size: 7 Copynumber: 5.4 Consensus size: 7
119762971 TATTATGTTT
119762981 TATTATA
1 TATTATA
119762988 TATTATA
1 TATTATA
119762995 TATTATA
1 TATTATA
119763002 TTATTATTA
1 -TATTA-TA
119763011 TATTATA
1 TATTATA
119763018 TAT
1 TAT
119763021 AGTAAAGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 19 0.61
8 10 0.32
9 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTATA
Found at i:119763473 original size:15 final size:15
Alignment explanation
Indices: 119763453--119763493 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
119763443 TAAAAGTGAT
119763453 TTGAATTGAATCAAA
1 TTGAATTGAATCAAA
119763468 TTGAATTGAATCAAA
1 TTGAATTGAATCAAA
119763483 TTGAATTGAAT
1 TTGAATTGAAT
119763494 GAAGAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.37
Consensus pattern (15 bp):
TTGAATTGAATCAAA
Found at i:119763907 original size:21 final size:22
Alignment explanation
Indices: 119763881--119763944 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
119763871 GCTTTGCCAA
119763881 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
* ** *
119763903 T-AGGCACCACGTGTTTCGT-T
1 TCAGGCACTATATGTGTCGTAT
* *
119763923 TCAGGCACTTTATGTGTAGTAT
1 TCAGGCACTATATGTGTCGTAT
119763945 ACTGCTTCTG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (22 bp):
TCAGGCACTATATGTGTCGTAT
Found at i:119775700 original size:26 final size:26
Alignment explanation
Indices: 119775660--119775769 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
119775650 CATGAAATTC
*
119775660 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119775686 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
119775712 TTATTATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
119775738 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
119775764 TTATCA
1 TTATCA
119775770 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 76 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119783983 original size:115 final size:113
Alignment explanation
Indices: 119783771--119783993 Score: 394
Period size: 115 Copynumber: 2.0 Consensus size: 113
119783761 AATTTCTCTT
119783771 TTCTTGCAATTTACTAGTCTCGAATTCATGTTCCTGTAATTTCTCCCATTCTTTTTTTGTCCTTT
1 TTCTTGCAATTTACTAGTCTCGAATTCATGTTCCTGTAATTTCTCCCATTCTTTTTTTGTCCTTT
119783836 CATACATTGATGTTGATTTTGAAGTACTAAGTAGACCAGTTTCTTTCA
66 CATACATTGATGTTGATTTTGAAGTACTAAGTAGACCAGTTTCTTTCA
*
119783884 TTCTTGCAATTTTACTAGT-TCCGAATTCATGTTCGTGTAATTTCTCCCATTCTTTTTTTTGTCC
1 TTCTTGCAA-TTTACTAGTCT-CGAATTCATGTTCCTGTAATTTCTCCCATTC-TTTTTTTGTCC
*
119783948 TTTGATACATTGATGTTGATTTTGAAGTACTAAGTAGACCAGTTTC
63 TTTCATACATTGATGTTGATTTTGAAGTACTAAGTAGACCAGTTTC
119783994 CTGACTTGGT
Statistics
Matches: 105, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
113 10 0.10
114 39 0.37
115 56 0.53
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (113 bp):
TTCTTGCAATTTACTAGTCTCGAATTCATGTTCCTGTAATTTCTCCCATTCTTTTTTTGTCCTTT
CATACATTGATGTTGATTTTGAAGTACTAAGTAGACCAGTTTCTTTCA
Found at i:119784165 original size:36 final size:36
Alignment explanation
Indices: 119784118--119784190 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
119784108 TCAGGGAAGT
*
119784118 CTGATGTTCATTGTAATAGTGTAAAACAGAAACCTA
1 CTGATGTTCATTGTAATAATGTAAAACAGAAACCTA
*
119784154 CTGATGTTCATTGTAATAATGTAAAACAGAAGCCTA
1 CTGATGTTCATTGTAATAATGTAAAACAGAAACCTA
119784190 C
1 C
119784191 ACCCGAGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (36 bp):
CTGATGTTCATTGTAATAATGTAAAACAGAAACCTA
Found at i:119786626 original size:13 final size:13
Alignment explanation
Indices: 119786608--119786642 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
119786598 ACTGTTCGAA
119786608 ACTGTTTGGTTAC
1 ACTGTTTGGTTAC
*
119786621 ACTGTTTGGTTAT
1 ACTGTTTGGTTAC
119786634 ACTGTTTGG
1 ACTGTTTGG
119786643 GTATTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.14, C:0.11, G:0.26, T:0.49
Consensus pattern (13 bp):
ACTGTTTGGTTAC
Found at i:119795151 original size:26 final size:24
Alignment explanation
Indices: 119795120--119795168 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
119795110 AAATAAAAAT
*
119795120 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
119795146 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
119795169 TAAGACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:119795188 original size:21 final size:22
Alignment explanation
Indices: 119795155--119795197 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
119795145 ATTTAAAAAC
* *
119795155 ATAAAAACAAATATTAAGACAA
1 ATAAAAACAAATACTAAAACAA
*
119795177 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATACTAAAACAA
119795198 TTCTTAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAAAAACAAATACTAAAACAA
Found at i:119804291 original size:41 final size:41
Alignment explanation
Indices: 119804246--119804323 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
119804236 AATAAATCGG
119804246 GTATTAGCGACG-TTTCACCAAAAACGCCGCTATAGGTTTGA
1 GTATTAGCGACGTTTTCA-CAAAAACGCCGCTATAGGTTTGA
* * * *
119804287 GTATTAGCGGCGTTTTTACGAAAGCGCCGCTATAGGT
1 GTATTAGCGACGTTTTCACAAAAACGCCGCTATAGGT
119804324 CTATCTATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
41 28 0.88
42 4 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
GTATTAGCGACGTTTTCACAAAAACGCCGCTATAGGTTTGA
Found at i:119804530 original size:154 final size:154
Alignment explanation
Indices: 119804250--119804754 Score: 938
Period size: 154 Copynumber: 3.3 Consensus size: 154
119804240 AATCGGGTAT
* *
119804250 TAGCGACGTTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
* *
119804315 GCTATAGGTCTATCTATAGCGGCATTTTTACAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
66 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
119804380 GTTTATTGCGAGCTTTGGTGGCAA
131 GTTTATTGCGAGCTTTGGTGGCAA
*
119804404 TAGCGGCGCTTCACTAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
*
119804469 GCTATAGGTCTATCTGTAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
66 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
*
119804534 GTTTATTACGAGCTTTGGTGGCAA
131 GTTTATTGCGAGCTTTGGTGGCAA
119804558 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
*
119804623 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGCACGACGTC
66 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
119804688 GTTTATTGCGAGCTTTGGTGGCAA
131 GTTTATTGCGAGCTTTGGTGGCAA
119804712 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTA
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTA
119804755 ACTACACCAT
Statistics
Matches: 340, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 340 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (154 bp):
TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTACGAAAGCGCC
GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCTGAACGACGTC
GTTTATTGCGAGCTTTGGTGGCAA
Found at i:119804951 original size:14 final size:14
Alignment explanation
Indices: 119804904--119804954 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
119804894 TTTTAACCCC
119804904 TAAACCCATAAACTA
1 TAAACCC-TAAACTA
* * *
119804919 TAGACCTTAAA-TT
1 TAAACCCTAAACTA
119804932 TGAAACCCTAAACTA
1 T-AAACCCTAAACTA
119804947 TAAACCCT
1 TAAACCCT
119804955 TAATTAATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
13 2 0.07
14 19 0.68
15 7 0.25
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:119805223 original size:14 final size:15
Alignment explanation
Indices: 119805189--119805226 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
119805179 AGGTTTATGC
119805189 ATGGTTTAGGGTAAAT
1 ATGGTTTAGGGT-AAT
*
119805205 ATGGTTTAGGGT-TT
1 ATGGTTTAGGGTAAT
119805219 ATGGTTTA
1 ATGGTTTA
119805227 TATGGATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
16 12 0.57
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.45
Consensus pattern (15 bp):
ATGGTTTAGGGTAAT
Found at i:119805471 original size:7 final size:7
Alignment explanation
Indices: 119805444--119805526 Score: 67
Period size: 7 Copynumber: 11.6 Consensus size: 7
119805434 TGAGGGTCTA
*
119805444 AGGGTTA
1 AGGGTTT
119805451 AGGGTTT
1 AGGGTTT
119805458 AGGGTTT
1 AGGGTTT
119805465 AGGGTTT
1 AGGGTTT
* *
119805472 AGTGTTC
1 AGGGTTT
**
119805479 AAAGTTT
1 AGGGTTT
*
119805486 AGGGATTA
1 AGGG-TTT
119805494 AGGGTTT
1 AGGGTTT
*
119805501 ATGGTTT
1 AGGGTTT
* *
119805508 AAGGTTCA
1 AGGGTT-T
119805516 AGGGTTT
1 AGGGTTT
119805523 AGGG
1 AGGG
119805527 GTTAATGGGA
Statistics
Matches: 59, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
7 48 0.81
8 11 0.19
ACGTcount: A:0.23, C:0.02, G:0.37, T:0.37
Consensus pattern (7 bp):
AGGGTTT
Found at i:119805520 original size:80 final size:80
Alignment explanation
Indices: 119805436--119805593 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 80
119805426 TTAAAGGTTG
** * *
119805436 AGGGTCTAAGGGTTAA-GGGTTTAGGGTTTAGGGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTT
1 AGGGTCTAAGGGTTAATGGG-ACAGGATTTACGGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTT
*
119805500 TATGGTTTAAGGTTCA
65 AATGGTTTAAGGTTCA
* * * * * *
119805516 AGGGTTTAGGGGTTAATGGGACATGATTTTCGGTTTAGTGTTTAAATTTTAGGGATTAAGGGTTA
1 AGGGTCTAAGGGTTAATGGGACAGGATTTACGGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTA
*
119805581 ATGGTTTAGGGTT
66 ATGGTTTAAGGTT
119805594 GAGGGGTTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
80 62 0.95
81 3 0.05
ACGTcount: A:0.23, C:0.03, G:0.34, T:0.39
Consensus pattern (80 bp):
AGGGTCTAAGGGTTAATGGGACAGGATTTACGGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTA
ATGGTTTAAGGTTCA
Found at i:119805601 original size:80 final size:81
Alignment explanation
Indices: 119805467--119805621 Score: 231
Period size: 80 Copynumber: 1.9 Consensus size: 81
119805457 TAGGGTTTAG
* *
119805467 GGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTTATGGTTTAAGGTTCAAGGGTTTAGGGGTTAA
1 GGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTAATGGTTTAAGGTTCAAGGGTTTAGGGATTAA
*
119805532 -TGGGACATGATTTTC
66 GGGGGACATGATTTTC
* * * * *
119805547 GGTTTAGTGTTTAAATTTTAGGGATTAAGGGTTAATGGTTTAGGGTTGAGGGGTTTAGGGATTAA
1 GGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTAATGGTTTAAGGTTCAAGGGTTTAGGGATTAA
119805612 GGGGGACATG
66 GGGGGACATG
119805622 GGTTAAGGGT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 58 0.88
81 8 0.12
ACGTcount: A:0.24, C:0.03, G:0.35, T:0.37
Consensus pattern (81 bp):
GGTTTAGTGTTCAAAGTTTAGGGATTAAGGGTTAATGGTTTAAGGTTCAAGGGTTTAGGGATTAA
GGGGGACATGATTTTC
Found at i:119808978 original size:64 final size:64
Alignment explanation
Indices: 119808907--119809272 Score: 651
Period size: 64 Copynumber: 5.7 Consensus size: 64
119808897 TAATATTTCT
* * * *
119808907 ATATTTCTATCACAATTTTTAATGAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
* *
119808971 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATATAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
* *
119809035 ATATTTCTATCACGATTTTTAATAAATTCATTTATTGATATAATATGTCTCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
*
119809099 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATGCAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
119809163 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
119809227 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
119809273 CAATAAAATC
Statistics
Matches: 292, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 292 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCTCATCTAATATACAA
Found at i:119809032 original size:21 final size:21
Alignment explanation
Indices: 119809008--119809095 Score: 56
Period size: 21 Copynumber: 4.1 Consensus size: 21
119808998 TTATTTATTG
119809008 ATATAATATGTCTCATCTAAT
1 ATATAATATGTCTCATCTAAT
*
119809029 ATATAAATATTTCT-ATC-ACGAT
1 ATAT-AATATGTCTCATCTA--AT
* * ** * *
119809051 TTTTAATAAAT-TCATTTATT
1 ATATAATATGTCTCATCTAAT
119809071 GATATAATATGTCTCATCTAAT
1 -ATATAATATGTCTCATCTAAT
119809093 ATA
1 ATA
119809096 CAAATATTTC
Statistics
Matches: 47, Mismatches: 13, Indels: 14
0.64 0.18 0.19
Matches are distributed among these distances:
20 3 0.06
21 24 0.51
22 20 0.43
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (21 bp):
ATATAATATGTCTCATCTAAT
Found at i:119810450 original size:24 final size:24
Alignment explanation
Indices: 119810423--119810490 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
119810413 ATTATTATTG
*
119810423 AAATATTCTTGTCCGTTTTATCAC
1 AAATATTATTGTCCGTTTTATCAC
* *
119810447 AAATATTATTCTCCGTTTTATTAC
1 AAATATTATTGTCCGTTTTATCAC
*
119810471 AAATATTATCGTCCGTTTTA
1 AAATATTATTGTCCGTTTTA
119810491 CCATTTAAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (24 bp):
AAATATTATTGTCCGTTTTATCAC
Found at i:119810638 original size:9 final size:9
Alignment explanation
Indices: 119810626--119810851 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
119810616 TATTTGATAT
*
119810626 CATAATTTA
1 CATAACTTA
119810635 CATAACTTA
1 CATAACTTA
* *
119810644 TATAACATA
1 CATAACTTA
*
119810653 TATAACTTA
1 CATAACTTA
119810662 CATAACTTA
1 CATAACTTA
* *
119810671 TATAACATA
1 CATAACTTA
119810680 CATAACTTA
1 CATAACTTA
*
119810689 TATAACTTA
1 CATAACTTA
*
119810698 TATAACTTA
1 CATAACTTA
* *
119810707 GATAA-ATA
1 CATAACTTA
*
119810715 TATAACTTA
1 CATAACTTA
119810724 CATAACTTA
1 CATAACTTA
119810733 CATAATACTTA
1 CAT-A-ACTTA
* *
119810744 AATATATTTTATA
1 CATA-A--CT-TA
*
119810757 TCATAATTTA
1 -CATAACTTA
119810767 CATAACTTA
1 CATAACTTA
119810776 CATAACTTA
1 CATAACTTA
*
119810785 TATAACTTA
1 CATAACTTA
* *
119810794 GATAA-ATA
1 CATAACTTA
* *
119810802 TATAATTTA
1 CATAACTTA
*
119810811 CATAA-ATA
1 CATAACTTA
* * *
119810819 TATATCATA
1 CATAACTTA
*
119810828 TCATAAATTA
1 -CATAACTTA
119810838 CATAACTTA
1 CATAACTTA
119810847 CATAA
1 CATAA
119810852 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:119810648 original size:18 final size:18
Alignment explanation
Indices: 119810626--119810851 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
119810616 TATTTGATAT
* *
119810626 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
119810644 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
119810662 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
119810680 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
119810698 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
119810715 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
119810733 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
119810757 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
119810776 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
119810794 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
119810811 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
119810828 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
119810847 CATAA
1 CATAA
119810852 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:119810778 original size:114 final size:114
Alignment explanation
Indices: 119810654--119810875 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
119810644 TATAACATAT
* * *
119810654 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-A
1 ATAACTTACATAACTTATATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCA
* * *
119810717 TAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
119810768 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
119810833 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
119810876 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:119816530 original size:21 final size:21
Alignment explanation
Indices: 119816497--119816547 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
119816487 ACAACTTAGA
*
119816497 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
119816518 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
119816539 GCAGAGGCA
1 GCAGAGGCA
119816548 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:119816848 original size:31 final size:31
Alignment explanation
Indices: 119816802--119816868 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
119816792 TGGTTGTATT
* *
119816802 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
119816833 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
119816864 TTTTA
1 TTTTA
119816869 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:119817011 original size:43 final size:43
Alignment explanation
Indices: 119816943--119817279 Score: 496
Period size: 43 Copynumber: 7.6 Consensus size: 43
119816933 GTAAAAAAAG
* *
119816943 CGCCGCT-AAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
119816985 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCATAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
119817028 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
119817071 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
119817114 CGCCGTTAAAAGCCTTGACCTGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAA------A---GCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
119817167 CTCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
119817210 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
119817253 CGCAGCTAAAAGCCTTGACATTTAGCG
1 CGCCGCTAAAAGCCTTGACCTTTAGCG
119817280 TCGTTTTTTT
Statistics
Matches: 274, Mismatches: 10, Indels: 21
0.90 0.03 0.07
Matches are distributed among these distances:
42 7 0.03
43 222 0.81
44 3 0.01
46 1 0.00
50 1 0.00
52 3 0.01
53 37 0.14
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:119817246 original size:139 final size:139
Alignment explanation
Indices: 119816996--119817271 Score: 498
Period size: 139 Copynumber: 2.0 Consensus size: 139
119816986 GCCGCTAAAA
*
119816996 GCCTTGACCTTTAGCGGCGCTTTTACCATAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT
1 GCCTTGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT
* *
119817061 TTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGTTAAAAG
66 TTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAG
119817126 CCTTGACCT
131 CCTTGACCT
* *
119817135 GCCTTGACCTTTAGCGGCGCTTTTCCCACAAACTCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT
1 GCCTTGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT
*
119817200 TTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAG
66 TTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAG
119817265 CCTTGAC
131 CCTTGAC
119817272 ATTTAGCGTC
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 131 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (139 bp):
GCCTTGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTT
TTACCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAG
CCTTGACCT
Found at i:119818020 original size:12 final size:13
Alignment explanation
Indices: 119817982--119818020 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
119817972 AAATATTTGA
119817982 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
119817995 ATCTGTTCTTAATT
1 CT-TGTTCTTAATT
119818009 CTTGTT-TTAATT
1 CTTGTTCTTAATT
119818021 TTCCAGGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.18, C:0.13, G:0.08, T:0.62
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:119818598 original size:27 final size:27
Alignment explanation
Indices: 119818560--119818621 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
119818550 ACTACTGTTC
* *
119818560 AATAGGTACACTTGCCTTTATCGTGAT
1 AATAGTTACACTTGCCTTCATCGTGAT
119818587 AATAGTTACACTTGCCTTCATCGTGAT
1 AATAGTTACACTTGCCTTCATCGTGAT
119818614 AATAGTTA
1 AATAGTTA
119818622 GTTTCAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (27 bp):
AATAGTTACACTTGCCTTCATCGTGAT
Found at i:119827995 original size:21 final size:21
Alignment explanation
Indices: 119827969--119828030 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
119827959 ATTGGGTAGA
119827969 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
119827990 TCAGCTCTTATGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTGT
*
119828011 TCAGCT-TT-CAAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
119828030 T
1 T
119828031 GGCGTATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 9 0.25
20 2 0.06
21 25 0.69
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:119829393 original size:26 final size:26
Alignment explanation
Indices: 119829345--119829395 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
119829335 GTTCATTTTG
* * *
119829345 TCAAAATAAATACATAAATATAAAAT
1 TCAAAATAAACACAGAAAAATAAAAT
*
119829371 TCAAAATAAACATAGAAAAATAAAA
1 TCAAAATAAACACAGAAAAATAAAA
119829396 AAAACCAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.22
Consensus pattern (26 bp):
TCAAAATAAACACAGAAAAATAAAAT
Found at i:119831005 original size:31 final size:29
Alignment explanation
Indices: 119830955--119831012 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
119830945 TTGGTTACCG
*
119830955 ATGTTTCAGTTGTAACAATTTGATCACAA
1 ATGTTTCAATTGTAACAATTTGATCACAA
*
119830984 ATGTTATCAATTGATAACAATTTGGTCAC
1 ATGTT-TCAATTG-TAACAATTTGATCAC
119831013 TGGTCCGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 6 0.24
31 14 0.56
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (29 bp):
ATGTTTCAATTGTAACAATTTGATCACAA
Found at i:119831272 original size:29 final size:31
Alignment explanation
Indices: 119831204--119831274 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
119831194 TAACAGAGAC
*
119831204 CAGTGACCAAATTGTTATCAATTGATAACAT
1 CAGTGACCAAATTGTTATCAACTGATAACAT
*
119831235 CTGTGACCAAATTGTTA-CAACTGA-AACAT
1 CAGTGACCAAATTGTTATCAACTGATAACAT
119831264 CAGTGACCAAA
1 CAGTGACCAAA
119831275 ACGTAAACTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 15 0.41
30 6 0.16
31 16 0.43
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (31 bp):
CAGTGACCAAATTGTTATCAACTGATAACAT
Found at i:119850184 original size:41 final size:40
Alignment explanation
Indices: 119850096--119850230 Score: 132
Period size: 41 Copynumber: 3.4 Consensus size: 40
119850086 ACCAGTTTGG
* * * *
119850096 CACCCAGTGCCTCGTCGGATAATTCAAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGGATAAATCAAAGAAGTAAATTGA
* * *
119850136 TACCCAGTGTCTCATCGGATAAATCTGAAGAAGTATATTGA
1 CACCCAGTGTCTCATCGGATAAATC-AAAGAAGTAAATTGA
* * * *
119850177 CACCCAGTGTCACATCGGTTAAA-C--CGAAGTAAATTGG
1 CACCCAGTGTCTCATCGGATAAATCAAAGAAGTAAATTGA
*
119850214 CACCCAGTGCCTCATCG
1 CACCCAGTGTCTCATCG
119850231 ACTCGAAGTT
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
37 25 0.32
40 22 0.28
41 32 0.41
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
CACCCAGTGTCTCATCGGATAAATCAAAGAAGTAAATTGA
Found at i:119851131 original size:6 final size:6
Alignment explanation
Indices: 119851107--119851161 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
119851097 AGGCCGTGGC
* * * *
119851107 TTTCTT TCTTCTT TCTCTT TTTCTT TCTCTT TTT-AT TTCCTT TTTCTT
1 TTTCTT T-TTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
119851155 TTTCTT T
1 TTTCTT T
119851162 CTTTCTTTCT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
5 3 0.08
6 30 0.77
7 6 0.15
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:119851132 original size:12 final size:12
Alignment explanation
Indices: 119851109--119851171 Score: 74
Period size: 12 Copynumber: 5.1 Consensus size: 12
119851099 GCCGTGGCTT
119851109 TCTTTCTTCTTTC
1 TCTTT-TTCTTTC
119851122 TCTTTTTCTTTC
1 TCTTTTTCTTTC
*
119851134 TCTTTTTATTTC
1 TCTTTTTCTTTC
*
119851146 -CTTTTTCTTTT
1 TCTTTTTCTTTC
119851157 TCTTTCTTTCTTTC
1 TC-TT-TTTCTTTC
119851171 T
1 T
119851172 TGTTTTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
11 9 0.21
12 19 0.44
13 7 0.16
14 8 0.19
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:119851154 original size:17 final size:18
Alignment explanation
Indices: 119851134--119851197 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 18
119851124 TTTTTCTTTC
119851134 TCTTTTTATTTCCTT-TT
1 TCTTTTTATTTCCTTCTT
* *
119851151 TCTTTTTCTTTCTTTCTT
1 TCTTTTTATTTCCTTCTT
*
119851169 TCTTGTTTTATTTTCCTTTGTT
1 TC-T-TTTTA-TTTCC-TTCTT
119851191 TCTTTTT
1 TCTTTTT
119851198 TCTATTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 13 0.35
18 4 0.11
19 1 0.03
20 8 0.22
21 5 0.14
22 6 0.16
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (18 bp):
TCTTTTTATTTCCTTCTT
Found at i:119851168 original size:37 final size:40
Alignment explanation
Indices: 119851106--119851211 Score: 114
Period size: 37 Copynumber: 2.6 Consensus size: 40
119851096 AAGGCCGTGG
* *
119851106 CTTTCTTTCTTCTTTCTCTTTTTCTTTCTCT-TTTTA-TTTC
1 CTTTGTTTCTT-TTTCTATTTTTCTTTCT-TGTTTTATTTTC
119851146 C-TT-TTTCTTTTTCT-TTCTTTCTTTCTTGTTTTATTTTC
1 CTTTGTTTCTTTTTCTATT-TTTCTTTCTTGTTTTATTTTC
119851184 CTTTGTTTCTTTTTTCTATTTTTTCTTT
1 CTTTGTTTC-TTTTTCTA-TTTTTCTTT
119851212 TATTTATTTG
Statistics
Matches: 58, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
36 3 0.05
37 19 0.33
38 11 0.19
39 4 0.07
40 5 0.09
41 7 0.12
42 7 0.12
43 2 0.03
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (40 bp):
CTTTGTTTCTTTTTCTATTTTTCTTTCTTGTTTTATTTTC
Found at i:119851172 original size:12 final size:12
Alignment explanation
Indices: 119851106--119851211 Score: 57
Period size: 12 Copynumber: 9.0 Consensus size: 12
119851096 AAGGCCGTGG
119851106 CTTTCTTTC-TT
1 CTTTCTTTCTTT
119851117 CTTTCTCTT-TTT
1 CTTTCT-TTCTTT
119851129 CTTTCTCTT-TTT
1 CTTTCT-TTCTTT
* *
119851141 ATTTCCTT-TTT
1 CTTTCTTTCTTT
119851152 C-TT-TTTCTTT
1 CTTTCTTTCTTT
119851162 CTTTCTTTCTTGT
1 CTTTCTTTCTT-T
*
119851175 -TTTATTTTCCTTT
1 CTTT-CTTT-CTTT
*
119851188 GTTTCTTT-TTT
1 CTTTCTTTCTTT
*
119851199 CTATTTTTTCTTT
1 CT-TTCTTTCTTT
119851212 TATTTATTTG
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
9 2 0.03
10 6 0.08
11 17 0.22
12 34 0.45
13 11 0.14
14 6 0.08
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (12 bp):
CTTTCTTTCTTT
Found at i:119851192 original size:22 final size:23
Alignment explanation
Indices: 119851162--119851205 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
119851152 CTTTTTCTTT
119851162 CTTTCTTTCTTGTTT-TATTTTC
1 CTTTCTTTCTTGTTTCTATTTTC
* *
119851184 CTTTGTTTCTTTTTTCTATTTT
1 CTTTCTTTCTTGTTTCTATTTT
119851206 TTCTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.75
Consensus pattern (23 bp):
CTTTCTTTCTTGTTTCTATTTTC
Found at i:119851220 original size:16 final size:16
Alignment explanation
Indices: 119851111--119851212 Score: 52
Period size: 17 Copynumber: 6.5 Consensus size: 16
119851101 CGTGGCTTTC
* *
119851111 TTTCTTCTTTCT-CTT
1 TTTCTTTTTTCTATTT
* *
119851126 TTTC-TTTCTCTTTTT
1 TTTCTTTTTTCTATTT
* *
119851141 ATTTCCTTTTTCTTTTT
1 -TTTCTTTTTTCTATTT
*
119851158 CTTTCTTTCTTTCT-TGT
1 -TTTCTTT-TTTCTATTT
* * *
119851175 TTT-ATTTTCCT-TTG
1 TTTCTTTTTTCTATTT
119851189 TTTCTTTTTTCTATTT
1 TTTCTTTTTTCTATTT
119851205 TTTCTTTT
1 TTTCTTTT
119851213 ATTTATTTGT
Statistics
Matches: 67, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
14 13 0.19
15 14 0.21
16 17 0.25
17 18 0.27
18 5 0.07
ACGTcount: A:0.03, C:0.19, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTCTTTTTTCTATTT
Found at i:119856732 original size:22 final size:21
Alignment explanation
Indices: 119856690--119856732 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
119856680 TTTAATCAAG
*
119856690 AATTTTTGATGTTATTTTAAT
1 AATTTTTGATGTTATTCTAAT
119856711 AATTTTATGAT-TTATGTCTAAT
1 AATTTT-TGATGTTAT-TCTAAT
119856733 TTACCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.58
Consensus pattern (21 bp):
AATTTTTGATGTTATTCTAAT
Found at i:119861086 original size:17 final size:17
Alignment explanation
Indices: 119861024--119861098 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 17
119861014 TACGAGAGTG
119861024 AAGAAACAAACAAAATTAA
1 AAGAAA-AAAC-AAATTAA
*
119861043 AA-ACAAAAACCAAAATAA
1 AAGA-AAAAA-CAAATTAA
*
119861061 TAA-ACAAAACGAAATTAA
1 -AAGAAAAAAC-AAATTAA
119861079 AAGAAAAAACAAATTAA
1 AAGAAAAAACAAATTAA
119861096 AAG
1 AAG
119861099 CTAGCCTAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
17 13 0.28
18 26 0.55
19 8 0.17
ACGTcount: A:0.73, C:0.11, G:0.05, T:0.11
Consensus pattern (17 bp):
AAGAAAAAACAAATTAA
Found at i:119872545 original size:39 final size:39
Alignment explanation
Indices: 119872491--119872569 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
119872481 ATTTTTTTGA
* *
119872491 AAGAATACCTTGTTAGTACTTGAACTTGTACAAAAAATT
1 AAGAACACATTGTTAGTACTTGAACTTGTACAAAAAATT
*
119872530 AAGAACACATTGTTAGTACTTGAACTTGTCCAAAAAATT
1 AAGAACACATTGTTAGTACTTGAACTTGTACAAAAAATT
119872569 A
1 A
119872570 TGCTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.32
Consensus pattern (39 bp):
AAGAACACATTGTTAGTACTTGAACTTGTACAAAAAATT
Found at i:119875334 original size:29 final size:30
Alignment explanation
Indices: 119875289--119875348 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
119875279 ATGTAATATT
*
119875289 TGGCATCTATATTTTTATAAATGTCCAATG
1 TGGCATCTATATTTTTAAAAATGTCCAATG
*
119875319 TGGCATCTATA-TTTTAAAAATGTCTAATG
1 TGGCATCTATATTTTTAAAAATGTCCAATG
119875348 T
1 T
119875349 AATACCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (30 bp):
TGGCATCTATATTTTTAAAAATGTCCAATG
Found at i:119875799 original size:15 final size:16
Alignment explanation
Indices: 119875775--119875808 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
119875765 TTTAATTCTA
119875775 TTTATTTTATTT-TAT
1 TTTATTTTATTTATAT
119875790 TTTATTTTATTTATAT
1 TTTATTTTATTTATAT
119875806 TTT
1 TTT
119875809 TATATAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTATTTATAT
Found at i:119876730 original size:26 final size:26
Alignment explanation
Indices: 119876663--119876715 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
119876653 GTGTTTAAGA
119876663 AAAAAACATAAAAATTTTAACTACAC
1 AAAAAACATAAAAATTTTAACTACAC
119876689 AAAAAACATAAAAATTTTAACTACAC
1 AAAAAACATAAAAATTTTAACTACAC
119876715 A
1 A
119876716 GCAACGCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (26 bp):
AAAAAACATAAAAATTTTAACTACAC
Found at i:119878210 original size:32 final size:33
Alignment explanation
Indices: 119878158--119878222 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
119878148 TTTCTTGTTT
119878158 CAAAGACATAAAAAAGTTATGTAAAAAGAAATG
1 CAAAGACATAAAAAAGTTATGTAAAAAGAAATG
*
119878191 CAAA-ACATAGAAAAA-TTATGTTAAAAGAAATG
1 CAAAGACATA-AAAAAGTTATGTAAAAAGAAATG
119878223 AAGAAGAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 21 0.70
33 9 0.30
ACGTcount: A:0.60, C:0.06, G:0.14, T:0.20
Consensus pattern (33 bp):
CAAAGACATAAAAAAGTTATGTAAAAAGAAATG
Found at i:119888611 original size:82 final size:82
Alignment explanation
Indices: 119888474--119888631 Score: 282
Period size: 82 Copynumber: 1.9 Consensus size: 82
119888464 TCATTCATCG
119888474 CATCATCAAAACTTTAAGGCACTTCGTCATTGACGATTGTCACATACTCACTTGAAGGATATTTA
1 CATCATCAAAACTTTAAGGCACTTCGTCATTGACGATTGTCACATACTCACTTGAAGGATATTTA
119888539 TTAGATGGTTTTTATTA
66 TTAGATGGTTTTTATTA
* *
119888556 CATCATCAAAACTTTGAGGCTA-TTCGTCGTTGACGATTGTCACATACTCACTTGAAGGATATTT
1 CATCATCAAAACTTTAAGGC-ACTTCGTCATTGACGATTGTCACATACTCACTTGAAGGATATTT
119888620 ATTAGATGGTTT
65 ATTAGATGGTTT
119888632 CTTTTCATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
82 72 0.99
83 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (82 bp):
CATCATCAAAACTTTAAGGCACTTCGTCATTGACGATTGTCACATACTCACTTGAAGGATATTTA
TTAGATGGTTTTTATTA
Found at i:119897160 original size:27 final size:27
Alignment explanation
Indices: 119897141--119897273 Score: 158
Period size: 27 Copynumber: 4.9 Consensus size: 27
119897131 CAACGGCAGT
* *
119897141 CAAGGATGGTAACGTGCCAATTCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
*
119897168 CATGGATGGTAACATGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
*
119897195 CAAGGATGGTAATATGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
* * **
119897222 CATGGCTGGTAATTTGCCAATGCCAGG
1 CAAGGATGGTAACATGCCAATGCCAGG
* * **
119897249 CATGGCTGGTAATTTGCCAATGCCA
1 CAAGGATGGTAACATGCCAATGCCA
119897274 ATGCCAGGCA
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (27 bp):
CAAGGATGGTAACATGCCAATGCCAGG
Found at i:119897199 original size:54 final size:54
Alignment explanation
Indices: 119897141--119897273 Score: 185
Period size: 54 Copynumber: 2.5 Consensus size: 54
119897131 CAACGGCAGT
** *
119897141 CAAGGATGGTAACGTGCCAATTCCAGGCATGGATGGTAACATGCCAATGCCAGG
1 CAAGGATGGTAATATGCCAATGCCAGGCATGGATGGTAACATGCCAATGCCAGG
* **
119897195 CAAGGATGGTAATATGCCAATGCCAGGCATGGCTGGTAATTTGCCAATGCCAGG
1 CAAGGATGGTAATATGCCAATGCCAGGCATGGATGGTAACATGCCAATGCCAGG
* * *
119897249 CATGGCTGGTAATTTGCCAATGCCA
1 CAAGGATGGTAATATGCCAATGCCA
119897274 ATGCCAGGCA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (54 bp):
CAAGGATGGTAATATGCCAATGCCAGGCATGGATGGTAACATGCCAATGCCAGG
Found at i:119897218 original size:33 final size:32
Alignment explanation
Indices: 119897155--119897299 Score: 131
Period size: 27 Copynumber: 5.0 Consensus size: 32
119897145 GATGGTAACG
*
119897155 TGCCAATTCCAGGCATGGATGGTAA-----CA
1 TGCCAATGCCAGGCATGGATGGTAATTTGCCA
*
119897182 TGCCAATGCCAGGCAAGGATGGTAA--T---A
1 TGCCAATGCCAGGCATGGATGGTAATTTGCCA
*
119897209 TGCCAATGCCAGGCATGGCTGGTAA-TT----
1 TGCCAATGCCAGGCATGGATGGTAATTTGCCA
*
119897236 TGCCAATGCCAGGCATGGCTGGTAATTTGCCAA
1 TGCCAATGCCAGGCATGGATGGTAATTTGCC-A
*
119897269 TGCCAATGCCAGGCATGGATGGTAAATTGCC
1 TGCCAATGCCAGGCATGGATGGTAATTTGCC
119897300 TGGCATGAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
27 72 0.69
28 3 0.03
33 29 0.28
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (32 bp):
TGCCAATGCCAGGCATGGATGGTAATTTGCCA
Found at i:119897233 original size:81 final size:81
Alignment explanation
Indices: 119897119--119897273 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
119897109 GTGCCAGTTA
* * *
119897119 ATGGTAATATACCAACGGCAGTCAAGGATGGTAACGTGCCAATTCCAGGCATGGATGGTAACATG
1 ATGGTAATATACCAACGCCAGGCAAGGATGGTAACGTGCCAATGCCAGGCATGGATGGTAACATG
119897184 CCAATGCCAGGCAAGG
66 CCAATGCCAGGCAAGG
* * * * ** * **
119897200 ATGGTAATATGCCAATGCCAGGCATGGCTGGTAATTTGCCAATGCCAGGCATGGCTGGTAATTTG
1 ATGGTAATATACCAACGCCAGGCAAGGATGGTAACGTGCCAATGCCAGGCATGGATGGTAACATG
119897265 CCAATGCCA
66 CCAATGCCA
119897274 ATGCCAGGCA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (81 bp):
ATGGTAATATACCAACGCCAGGCAAGGATGGTAACGTGCCAATGCCAGGCATGGATGGTAACATG
CCAATGCCAGGCAAGG
Found at i:119904448 original size:96 final size:97
Alignment explanation
Indices: 119904331--119904508 Score: 250
Period size: 96 Copynumber: 1.8 Consensus size: 97
119904321 TTCTGTCACC
* * *
119904331 AAAGGAAATGATGGAGTAGACAAGAAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCAAAGC
1 AAAGGAAACGATGGAGCAGACAAGAAGCCCAAGAAGCTTAGTTCGAGCAAGGGAAAAGCCAAAGC
119904396 CAAGAGGGCAAAGAGGAACAAGTCTGTCATTG
66 CAAGAGGGCAAAGAGGAACAAGTCTGTCATTG
* * * * * **
119904428 AAAGG-AACGATGGAGCAGACAAGGATCCCAATAAGCTTAGTTCGAGTAAGGTAAAAGCTGAAGC
1 AAAGGAAACGATGGAGCAGACAAGAAGCCCAAGAAGCTTAGTTCGAGCAAGGGAAAAGCCAAAGC
*
119904492 CAAGAGGGCGAAGAGGA
66 CAAGAGGGCAAAGAGGA
119904509 GAAAAAAGAA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
96 65 0.93
97 5 0.07
ACGTcount: A:0.41, C:0.15, G:0.31, T:0.12
Consensus pattern (97 bp):
AAAGGAAACGATGGAGCAGACAAGAAGCCCAAGAAGCTTAGTTCGAGCAAGGGAAAAGCCAAAGC
CAAGAGGGCAAAGAGGAACAAGTCTGTCATTG
Found at i:119907522 original size:24 final size:24
Alignment explanation
Indices: 119907467--119907532 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 24
119907457 ACTACAAAAG
* *
119907467 TGAGTGGCTTGTCCACAACACTAA
1 TGAGTGGCTTGACCACAACAATAA
** * *
119907491 CAATTGGCTTGACCACAACAATAT
1 TGAGTGGCTTGACCACAACAATAA
*
119907515 TGAGTGGCTTGGCCACAA
1 TGAGTGGCTTGACCACAA
119907533 TGTAAATGAG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (24 bp):
TGAGTGGCTTGACCACAACAATAA
Found at i:119908740 original size:32 final size:32
Alignment explanation
Indices: 119908704--119908775 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
119908694 CTATAGACTG
*
119908704 TGAAACTACTTATATACTGAAA-TTATAAATTA
1 TGAAACTACATATATACTGAAACTT-TAAATTA
* *
119908736 TGAAACTACATATATACTTAAACTTTAAATTG
1 TGAAACTACATATATACTGAAACTTTAAATTA
119908768 TGAAACTA
1 TGAAACTA
119908776 TAGACTATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 34 0.94
33 2 0.06
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (32 bp):
TGAAACTACATATATACTGAAACTTTAAATTA
Done.