Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 414 of 444
Found at i:120151290 original size:2 final size:2
Alignment explanation
Indices: 120151285--120151322 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
120151275 ATACTTCGTG
120151285 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120151323 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:120153539 original size:18 final size:18
Alignment explanation
Indices: 120153513--120153547 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
120153503 TCGGATCACC
*
120153513 TTTGTTTTAATAAAACGT
1 TTTGGTTTAATAAAACGT
*
120153531 TTTGGTTTACTAAAACG
1 TTTGGTTTAATAAAACG
120153548 GCATTTTAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTGGTTTAATAAAACGT
Found at i:120154585 original size:46 final size:46
Alignment explanation
Indices: 120154530--120154633 Score: 106
Period size: 47 Copynumber: 2.3 Consensus size: 46
120154520 GTATAAGACA
* *
120154530 AATTT-AAATAAGAATAAGACAAGTTCAAAATAA-CATATAT-AAAGG
1 AATTTAAAATAAGAATAAG--AAGCTCAAAATAATAATATATAAAAGG
* * * *
120154575 AATTTAAAATACATATTAAGAGGCTCAAAATAATAATATGTAAAAGG
1 AATTTAAAATA-AGAATAAGAAGCTCAAAATAATAATATATAAAAGG
120154622 AATTTAAAATAA
1 AATTTAAAATAA
120154634 ATAATGTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
45 16 0.33
46 11 0.22
47 22 0.45
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.27
Consensus pattern (46 bp):
AATTTAAAATAAGAATAAGAAGCTCAAAATAATAATATATAAAAGG
Found at i:120154650 original size:25 final size:26
Alignment explanation
Indices: 120154612--120154664 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
120154602 AAATAATAAT
*
120154612 ATGTAAAAGGAA-TTTAAAATAAATA
1 ATGTAAAAGAAATTTTAAAATAAATA
* *
120154637 ATGTATAAGAAATTTTAAAGTAAATA
1 ATGTAAAAGAAATTTTAAAATAAATA
120154663 AT
1 AT
120154665 AATTTAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (26 bp):
ATGTAAAAGAAATTTTAAAATAAATA
Found at i:120154743 original size:26 final size:26
Alignment explanation
Indices: 120154685--120154744 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
120154675 AAGTAATACT
* * *
120154685 TATAAAACTTTAAAATAGATAATATA
1 TATAAAAATTTAAAATAAAGAATATA
* * *
120154711 CACAAAAATTTAAAATAAAGCATATA
1 TATAAAAATTTAAAATAAAGAATATA
120154737 TATAAAAA
1 TATAAAAA
120154745 AAATTAGAAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (26 bp):
TATAAAAATTTAAAATAAAGAATATA
Found at i:120158842 original size:22 final size:23
Alignment explanation
Indices: 120158802--120158848 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 23
120158792 ATAACAGTTC
120158802 AAGATTTTTCTTTTCATTTATTAA
1 AAGATTTTTC-TTTCATTTATTAA
120158826 AAGATTTTTC-TTCATTTATTAA
1 AAGATTTTTCTTTCATTTATTAA
120158848 A
1 A
120158849 TCTATATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.57
24 10 0.43
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (23 bp):
AAGATTTTTCTTTCATTTATTAA
Found at i:120164226 original size:131 final size:131
Alignment explanation
Indices: 120164024--120164311 Score: 391
Period size: 131 Copynumber: 2.2 Consensus size: 131
120164014 TGAAAAAGCG
* * * *
120164024 CAACCCAGCACGATACGGC-TCGATTCTCAAATCGCCAAACATCGAATATCGCCTTCGCTTTGAA
1 CAACCCAGCACGATAGGGCAT-GATTCTCAAATCACCAAACACCGAATATCGCCTTCGCTTTAAA
* * *
120164088 AGTTTTTTA-ATAAACATGAGTGAAAACCTAAAGGAATATTTGATTGTTTTGAGCAAACGAGAAA
65 AGGTTTTTAGA-AAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAA
120164152 TCA
129 TCA
* * * * * * *
120164155 CAACCCAGCACGATAGGGCATGATTCTCGAATTATCAAACACCGAGTATTGCCTTTGTTTTAAAA
1 CAACCCAGCACGATAGGGCATGATTCTCAAATCACCAAACACCGAATATCGCCTTCGCTTTAAAA
*
120164220 GGTTTTTAGAAGACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATC
66 GGTTTTTAGAAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATC
120164285 A
131 A
* *
120164286 CAACCCAGCACGTTAGGGCACGATTC
1 CAACCCAGCACGATAGGGCATGATTC
120164312 CGCGAATTGC
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
131 136 0.99
132 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCTCAAATCACCAAACACCGAATATCGCCTTCGCTTTAAAA
GGTTTTTAGAAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATC
A
Found at i:120164479 original size:132 final size:132
Alignment explanation
Indices: 120164101--120164487 Score: 458
Period size: 132 Copynumber: 2.9 Consensus size: 132
120164091 TTTTTAATAA
* *
120164101 ACATGAGTGAAAACCTAAAGGAATATTTGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCAC
1 ACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCAC
* * ** * * * * *
120164166 GATAGGGCA-TGA-TTCTCGAATTATCAAACACCGAGTATTGCCTTTGTTTTAAA-AGGTTTTTA
66 GTTAGGGCACT-ATTTCGCGAATTGCCAAATACCGAATCTTACCTTTGTTTTAAAGA-ATTTTTA
120164228 GAAG
129 GAAG
120164232 ACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCAC
1 ACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCAC
* * * * * *
120164297 GTTAGGGCACGATTCCGCGAATTGCCAAATATC-AAACTTTACCTTCGTTTTAAAGAATTTTTAT
66 GTTAGGGCACTATTTCGCGAATTGCCAAATACCGAATC-TTACCTTTGTTTTAAAGAATTTTTAG
120164361 AAG
130 AAG
* *** * * * ** *
120164364 GCATGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACAC
1 ACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCAC
* *
120164429 GTTAGGGCACTATTTCGCGAATTGCCAAATACCGAATCTCATCTTTGTTTTAAAGAATT
66 GTTAGGGCACTATTTCGCGAATTGCCAAATACCGAATCTTACCTTTGTTTTAAAGAATT
120164488 CTTAAACGAA
Statistics
Matches: 217, Mismatches: 34, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
131 73 0.34
132 140 0.65
133 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (132 bp):
ACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCAC
GTTAGGGCACTATTTCGCGAATTGCCAAATACCGAATCTTACCTTTGTTTTAAAGAATTTTTAGA
AG
Found at i:120167692 original size:44 final size:43
Alignment explanation
Indices: 120167644--120168995 Score: 1245
Period size: 44 Copynumber: 30.4 Consensus size: 43
120167634 CCACTGCAAT
* * * **
120167644 ACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGTTAAC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTG-CCAC
* * * *
120167688 ACAGAGATGCCAAATCTGCTATCTTCGATCTG-TCCTCTGACAAT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCT-CTCTG-CCAC
* * *
120167732 ACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCCTGCCAAT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* *
120167776 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTTTCTGCCAAT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* * * *
120167820 ACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCGC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * * * *
120167863 TACAGAGACACCAAATCTGTTATCTTTGATCTGCCCTCTAACAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT-GCCAC
* * **
120167908 ACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGTT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* * *
120167952 ACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * *
120167995 TACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* *
120168039 TACAGAGACGCCAAATCTGTTATCTTCGATCTACT-TCCTGCCAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CTGCC-AC
**
120168084 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-TCGCCGTT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT-GCC-AC
* * ** *
120168128 ACAGAGACGCCAAATCTATTATCTTCGATCTGCCCTCTGATAAT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTG-CCAC
* * * * * *
120168172 ACAGATAAGCCAAATCTGCTATCTTCGATCTCCTCTCTACCGC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * * *
120168215 TACAAAGACGCCAAATCTGTTATCTTCAATCTGTTCTCCGCCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
**
120168259 TACAGAGACATCAAATCTGTTATCTTCGATCTGTTATCTTCGATCTGCC-C
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTG----C-TC--TCTGCCAC
* * * ** ** ** * * *
120168309 TCTGATAATACAGAGAAGCCAAATCTGCTATCTTCGATCTCCTCTCTACCGC
1 AC--A-GAGAC-GCCAAATC-TGT-T---ATCTTCGATCTGCTCTCTGCCAC
* * * *
120168361 TACAAAGACGCCAAATCTGTTATCTTCAATCTGCTCTCCGCCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * *
120168405 TACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCCCTGCCAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* *
120168450 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGCCAAT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* **
120168494 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGTT
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* * *
120168538 ACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTTCCGC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * * *
120168581 TACAGAGACACCAAATCTGTTATCTTCGATCTGCCCTCTAACAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCT-GCCAC
*
120168626 ACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * *
120168669 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
**
120168713 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCAC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * *
120168757 TACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCCCTGCCAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCC-AC
* *
120168802 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* *
120168845 TATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * *
120168889 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
* * * *
120168933 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCCCTCTGACAAT
1 -ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTG-CCAC
120168978 ACAGAGACGCCAAATCTG
1 ACAGAGACGCCAAATCTG
120168996 CTTGGATCTG
Statistics
Matches: 1101, Mismatches: 168, Indels: 78
0.82 0.12 0.06
Matches are distributed among these distances:
43 7 0.01
44 1038 0.94
45 6 0.01
47 1 0.00
48 1 0.00
49 7 0.01
50 5 0.00
51 12 0.01
52 4 0.00
53 6 0.01
54 2 0.00
55 1 0.00
58 11 0.01
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (43 bp):
ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAC
Found at i:120167789 original size:88 final size:88
Alignment explanation
Indices: 120167640--120168995 Score: 1475
Period size: 88 Copynumber: 15.2 Consensus size: 88
120167630 TGTTCCACTG
* * * *** *
120167640 CAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCT-CTGTTAAC-ACAGAGATGCCAAAT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTG-CCGCTACAGAGACGCCAAAT
* *
120167703 CTGCTATCTTCGATCTGTCCTCTGA
65 CTGTTATCTTCGATCTG-CCTCTGC
* **
120167728 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
*
120167792 TGTTATCTTCGATCTGCTTTCTGC
66 TGTTATCTTCGATCTGC-CTCTGC
* * *
120167816 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCC-GCCGCTACAGAGACACCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* **
120167880 TGTTATCTTTGATCTGCCCTCTAA
66 TGTTATCTTCGATCTG-CCTCTGC
* * *
120167904 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCC-GCCGTTACAGAAACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
*
120167968 TGTTATCTTCGATCTGCTCTCCGC
66 TGTTATCTTCGATCTGC-CTCTGC
** * *
120167992 CGCTACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCC-GCCGCTACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* *
120168056 TGTTATCTTCGATCTACTTCCTGC
66 TGTTATCTTCGATCTGCCT-CTGC
* *
120168080 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTC-GCCGTTACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* *
120168144 TATTATCTTCGATCTGCCCTCTGA
66 TGTTATCTTCGATCTG-CCTCTGC
* * * * * * *
120168168 TAATACAGATAAGCCAAATCTGCTATCTTCGATCTCCTCT-CTACCGCTACAAAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* * *
120168232 TGTTATCTTCAATCTGTTCTCCGC
66 TGTTATCTTCGATCTG-CCTCTGC
** ** * * * *
120168256 CGCTACAGAGACATCAAATCTGTTATCTTCGATCTGTTATCTTCGATCTGCCCTCTGATA-ATAC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTG--CTC-TC---CTG-CCGCT-ACAGAGAC
** ** * ** * * *
120168320 AGAGAAGCCAAATCTGCTATCTTCGATCTCCTCTCTAC
58 -GCCAA---ATCTGTTATCT-T-CGATCTGC-CTCTGC
** * * *
120168358 CGCTACAAAGACGCCAAATCTGTTATCTTCAATCTGCTCTCC-GCCGCTACAGAGACGTCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
*
120168422 TGTTATCTTCGATCTGCTCCCTGC
66 TGTTATCTTCGATCTGC-CTCTGC
**
120168446 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
*
120168510 TGTTATCTTCGATCTGCTCTCCGC
66 TGTTATCTTCGATCTGC-CTCTGC
** * * *
120168534 CGTTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCT-CTTCCGCTACAGAGACACCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
**
120168598 TGTTATCTTCGATCTGCCCTCTAA
66 TGTTATCTTCGATCTG-CCTCTGC
* *
120168622 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCT-CTGCCACTACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* *
120168686 TGTTATCTTTGATCTGCTCTCCGC
66 TGTTATCTTCGATCTGC-CTCTGC
** * * *
120168710 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCC-ACCACTACAGAGATGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* *
120168774 TGTTATCTTCGATTTGCTCCCTGC
66 TGTTATCTTCGATCTGC-CTCTGC
*
120168798 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCC-GCCGCTATAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
120168862 TGTTATCTTCGATCTGCTCTCTGC
66 TGTTATCTTCGATCTGC-CTCTGC
** * *
120168886 CGCTACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCC-GTCGCTACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
* *
120168950 TGTTATCTTTGATCTGCCCTCTGA
66 TGTTATCTTCGATCTG-CCTCTGC
120168974 CAATACAGAGACGCCAAATCTG
1 CAATACAGAGACGCCAAATCTG
120168996 CTTGGATCTG
Statistics
Matches: 1072, Mismatches: 164, Indels: 64
0.82 0.13 0.05
Matches are distributed among these distances:
87 8 0.01
88 968 0.90
89 9 0.01
90 7 0.01
91 1 0.00
93 5 0.00
94 7 0.01
95 3 0.00
96 8 0.01
97 5 0.00
99 2 0.00
100 7 0.01
101 1 0.00
102 41 0.04
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (88 bp):
CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCTGCCGCTACAGAGACGCCAAATC
TGTTATCTTCGATCTGCCTCTGC
Found at i:120167877 original size:132 final size:132
Alignment explanation
Indices: 120167640--120168995 Score: 1632
Period size: 132 Copynumber: 10.2 Consensus size: 132
120167630 TGTTCCACTG
* * * ** * *
120167640 CAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGTTAACACAGAGATGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* * * ** *
120167705 GCTATCTTCGATCTG-TCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCC
66 GTTATCTTCGATCTGCT-CTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCC
120167769 TGC
130 TGC
*
120167772 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTTTCTGCCAATACAGAGACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* * * *
120167837 GCTATCTTCGATCTACTCTCCGCCGCTACAGAGACACCAAATCTGTTATCTTTGATCTGC-CCTC
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCC-C
**
120167901 TAA
130 TGC
* * ** *
120167904 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGTTACAGAAACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* *
120167969 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCC
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-CC
120168034 -GC
130 TGC
** *
120168036 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTACT-TCCTGCCAATACAGAGACGCCAAATC
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CTGCCAATACAGAGACGCCAAATC
* * *
120168100 TGTTATCTTCGATCTGCTCTTCGCCGTTACAGAGACGCCAAATCTATTATCTTCGATCTGC-CCT
65 TGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCC-
*
120168164 CTGA
129 CTGC
* * * * * * ** *
120168168 TAATACAGATAAGCCAAATCTGCTATCTTCGATCTCCTCTCTACCGCTACAAAGACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* * **
120168233 GTTATCTTCAATCTGTTCTCCGCCGCTACAGAGACATCAAATCTGTTATCTTCGATCTGTTATCT
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTG----C-
*
120168298 TCGATCTGCCC
126 TC--CCTG--C
* * * * ** *
120168309 TCTGATAATACAGAGAAGCCAAATCTGCTATCTTCGATCTCCTCTCTACCGCTACAAAGACGCCA
1 -C----AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
120168374 AATCTGTTATCTTCAATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGC
61 AATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGC
120168439 TCCCTGC
126 TCCCTGC
*
120168446 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* * *
120168511 GTTATCTTCGATCTGCTCTCCGCCGTTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCT
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCT
*
120168576 TC
131 GC
** * * **
120168578 CGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCCCTCTAACAATACAGAGACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* * * *
120168643 GCTATCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCC
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-CC
120168708 -GC
130 TGC
** ** * *
120168710 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCACTACAGAGATGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* **
120168775 GTTATCTTCGATTTGCTC-CCTGCCAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTC
66 GTTATCTTCGATCTGCTCTCC-GCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-C
120168839 C-GC
129 CTGC
** * ** *
120168842 CGCTATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAAACGCCAAATCT
1 CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
* *
120168907 GTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGC-CCTC
66 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCC-C
*
120168971 TGA
130 TGC
120168974 CAATACAGAGACGCCAAATCTG
1 CAATACAGAGACGCCAAATCTG
120168996 CTTGGATCTG
Statistics
Matches: 1072, Mismatches: 124, Indels: 56
0.86 0.10 0.04
Matches are distributed among these distances:
130 2 0.00
131 8 0.01
132 921 0.86
133 7 0.01
134 1 0.00
136 2 0.00
137 1 0.00
138 1 0.00
139 6 0.01
141 2 0.00
142 1 0.00
146 120 0.11
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (132 bp):
CAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCT
GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCT
GC
Found at i:120168292 original size:14 final size:14
Alignment explanation
Indices: 120168273--120168305 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
120168263 GAGACATCAA
120168273 ATCTGTTATCTTCG
1 ATCTGTTATCTTCG
120168287 ATCTGTTATCTTCG
1 ATCTGTTATCTTCG
120168301 ATCTG
1 ATCTG
120168306 CCCTCTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.48
Consensus pattern (14 bp):
ATCTGTTATCTTCG
Found at i:120172661 original size:126 final size:127
Alignment explanation
Indices: 120172435--120172687 Score: 481
Period size: 126 Copynumber: 2.0 Consensus size: 127
120172425 TTTTCTATAA
*
120172435 AACAAATTCTTTTTCATAAAACGGATTACGTATACGGCCTTGCTTTCGTATTCCAGGTGAAGGCA
1 AACAAATTCTTTTTCATAAAACGGATTACGTATACGGCCTTGCTTTCGTATTCCAAGTGAAGGCA
120172500 CTGATCCCCTTTCTTCGTGAAAGTCAAATCTCGGAAGCTTCCAATGCATGCCTCTACTAGCT
66 CTGATCCCCTTTCTTCGTGAAAGTCAAATCTCGGAAGCTTCCAATGCATGCCTCTACTAGCT
120172562 AACAAATTCTTTTTCATAAAACGGATTACGTATACGGCCTTG-TTTCGTATTCCAAGTGAAGGCA
1 AACAAATTCTTTTTCATAAAACGGATTACGTATACGGCCTTGCTTTCGTATTCCAAGTGAAGGCA
*
120172626 CTGATCTCCTTTCTTCGTGAAAGTCAAATCTCGGAAGCTTCCAATGCATGCCTCTACTAGCT
66 CTGATCCCCTTTCTTCGTGAAAGTCAAATCTCGGAAGCTTCCAATGCATGCCTCTACTAGCT
120172688 CCTTTTTGCT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
126 82 0.66
127 42 0.34
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (127 bp):
AACAAATTCTTTTTCATAAAACGGATTACGTATACGGCCTTGCTTTCGTATTCCAAGTGAAGGCA
CTGATCCCCTTTCTTCGTGAAAGTCAAATCTCGGAAGCTTCCAATGCATGCCTCTACTAGCT
Found at i:120174443 original size:132 final size:130
Alignment explanation
Indices: 120174047--120174545 Score: 449
Period size: 131 Copynumber: 3.8 Consensus size: 130
120174037 TCCCGAAGAG
* * * * * * * * *
120174047 ATATTCGATTA-TTTGGGACAAATGAAAAAGCGCAACCCAGCACGATAGGACTCGATTCT-CAAA
1 ATATTCGATTATTTTGAG-CAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCTGCGAA
* * ** * *
120174110 TCGCCAAACATCGAATATCGCCTTCACTTTGAAAG-ATTTTTAATAA-ACATGAGTGAAAACCTA
65 TTGCCAAATATC-AA-ATTTCCTTC-GTTTTAAAGAATTTTTAA-AAGACATGAGTGAAAACCTA
120174173 AAGGA
126 AAGGA
* * *
120174178 ATATTCGATTGTTTTGAGCAAACGAGAAATCAC-ACCCAGCACGATAGGGCATGATTCT-CGAAT
1 ATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCTGCGAAT
** * * * * * * *
120174241 TATCAAACACCGAGTATTCCTTTGTTTTAAA-AGGTTTTTAGAAGACATGAGTGAAAACCTAAAG
66 TGCCAAATATCAAAT-TTCCTTCGTTTTAAAGA-ATTTTTAAAAGACATGAGTGAAAACCTAAAG
120174305 GA
129 GA
*
120174307 ATATTTGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCTGCGAAT
1 ATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCTGCGAAT
* *** *
120174372 TGCCAAATATCAAACTTTACCTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTTTGAAG
66 TGCCAAATATCAAA-TTT-CCTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAAACCTAAAG
*
120174437 GG
129 GA
* ** * *
120174439 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTT-GGGCACTATT-TCGCGAA
1 ATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCT-GCGAA
* * *
120174502 TTGCCAAATATCGAATGTCGTCTTCGTTTTAAAGAATTCTTAAA
65 TTGCCAAATATCAAATTTC--CTTCGTTTTAAAGAATTTTTAAA
120174546 TGAATACTTA
Statistics
Matches: 304, Mismatches: 51, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
128 9 0.03
129 65 0.21
130 59 0.19
131 86 0.28
132 84 0.28
133 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (130 bp):
ATATTCGATTATTTTGAGCAAACGAGAAATCACAACCCAGCACGTTAGGGCACGATTCTGCGAAT
TGCCAAATATCAAATTTCCTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAAACCTAAAGGA
Found at i:120175647 original size:32 final size:32
Alignment explanation
Indices: 120175611--120175675 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
120175601 TGTATGCATT
120175611 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
120175643 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
120175675 T
1 T
120175676 GATAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:120180220 original size:21 final size:21
Alignment explanation
Indices: 120180191--120180238 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
120180181 GTGGTACGGT
*
120180191 GCTGGGGGGCTC-AGTTGCGGC
1 GCTGAGGGGCTCGA-TTGCGGC
120180212 GCTGAGGGGCTCGATTGCGGC
1 GCTGAGGGGCTCGATTGCGGC
120180233 GCTGAG
1 GCTGAG
120180239 CGAATGGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.08, C:0.23, G:0.50, T:0.19
Consensus pattern (21 bp):
GCTGAGGGGCTCGATTGCGGC
Found at i:120180739 original size:14 final size:13
Alignment explanation
Indices: 120180720--120180763 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
120180710 TTAGCTAAAT
*
120180720 TTAAAATTAAAAA
1 TTAAAAATAAAAA
*
120180733 TTAAAAATAAAAT
1 TTAAAAATAAAAA
*
120180746 TATAAAAATAAAAT
1 T-TAAAAATAAAAA
120180760 TTAA
1 TTAA
120180764 CATAGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 15 0.54
14 13 0.46
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAAATAAAAA
Found at i:120180904 original size:16 final size:16
Alignment explanation
Indices: 120180883--120180914 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
120180873 AAATTAAAAT
120180883 GCATTCATATCACCAA
1 GCATTCATATCACCAA
*
120180899 GCATTCGTATCACCAA
1 GCATTCATATCACCAA
120180915 TATTAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.25
Consensus pattern (16 bp):
GCATTCATATCACCAA
Found at i:120185410 original size:5 final size:5
Alignment explanation
Indices: 120185400--120185455 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
120185390 GTTTATAACC
120185400 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
120185450 TATTA T
1 TATTA T
120185456 TATTTCTATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:120186297 original size:15 final size:15
Alignment explanation
Indices: 120186277--120186306 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120186267 AAGTATATTA
120186277 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
*
120186292 AAATATTTTAAAAAT
1 AAATATTTAAAAAAT
120186307 GAGACATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:120186561 original size:80 final size:79
Alignment explanation
Indices: 120186452--120186602 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 79
120186442 TAGTGGAATG
* *
120186452 TTTAGATTCCACAAGTAAGATTAGGGTGATGACGAGTGTTCTA-TA-AGATATAATAAAATATTA
1 TTTAGATTCCACAACTAAGATTAGAGTGATGACGAGTGTTC-AGTAGA-ATATAATAAAATA-TA
120186515 AAATATATAAAAGAGTT
63 AAATATATAAAAGAGTT
* *
120186532 TTTAGATTCCACAACTAA-AGTTAGAGTGATGACGAGTGTTCAGTAGAATATAGTAAAATATAAT
1 TTTAGATTCCACAACTAAGA-TTAGAGTGATGACGAGTGTTCAGTAGAATATAATAAAATATAAA
120186596 ATATATA
65 ATATATA
120186603 TATATATATA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
79 12 0.19
80 51 0.80
81 1 0.02
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.32
Consensus pattern (79 bp):
TTTAGATTCCACAACTAAGATTAGAGTGATGACGAGTGTTCAGTAGAATATAATAAAATATAAAA
TATATAAAAGAGTT
Found at i:120186601 original size:2 final size:2
Alignment explanation
Indices: 120186589--120186630 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
120186579 ATATAGTAAA
120186589 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120186630 A
1 A
120186631 AAGGAAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120186823 original size:16 final size:14
Alignment explanation
Indices: 120186797--120186838 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 14
120186787 TTTTAAATAA
*
120186797 TAATAAGATTATATT
1 TAATAAAATTA-ATT
120186812 TAAATAAAATTAATT
1 T-AATAAAATTAATT
120186827 TAAT-AAATTAAT
1 TAATAAAATTAAT
120186839 GTCAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 8 0.32
14 3 0.12
15 5 0.20
16 9 0.36
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
TAATAAAATTAATT
Found at i:120187828 original size:21 final size:21
Alignment explanation
Indices: 120187802--120187844 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
120187792 CGTAGGTGAT
120187802 AATTTTTGCTTCTG-GTATCTG
1 AATTTTTGCTTC-GAGTATCTG
120187823 AATTTTTGCTTCGAGTATCTG
1 AATTTTTGCTTCGAGTATCTG
120187844 A
1 A
120187845 TAGAAGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (21 bp):
AATTTTTGCTTCGAGTATCTG
Found at i:120191750 original size:251 final size:251
Alignment explanation
Indices: 120191307--120191810 Score: 1008
Period size: 251 Copynumber: 2.0 Consensus size: 251
120191297 TAAAAAATAA
120191307 ATAGACTAAATTCTTAAAAATAAAAATATATAAATTAAAATTTAAAATTATAAAGGGTACGTAAA
1 ATAGACTAAATTCTTAAAAATAAAAATATATAAATTAAAATTTAAAATTATAAAGGGTACGTAAA
120191372 AATTATTTTAACCTTTAGGAAATTATACTTAAAAAATTATTTATAATTACCTTAAATTTTTCTTT
66 AATTATTTTAACCTTTAGGAAATTATACTTAAAAAATTATTTATAATTACCTTAAATTTTTCTTT
120191437 AATACATGCAAGTCCTAATGGTGGTGGCGCCACTTTTTACCTAGACCAGTCGACTTTTTCATCTA
131 AATACATGCAAGTCCTAATGGTGGTGGCGCCACTTTTTACCTAGACCAGTCGACTTTTTCATCTA
120191502 AAATATTCATACACACTGACAACCGCTGGTTTTGCAGTACCGAATTTTGCAGTCTC
196 AAATATTCATACACACTGACAACCGCTGGTTTTGCAGTACCGAATTTTGCAGTCTC
120191558 ATAGACTAAATTCTTAAAAATAAAAATATATAAATTAAAATTTAAAATTATAAAGGGTACGTAAA
1 ATAGACTAAATTCTTAAAAATAAAAATATATAAATTAAAATTTAAAATTATAAAGGGTACGTAAA
120191623 AATTATTTTAACCTTTAGGAAATTATACTTAAAAAATTATTTATAATTACCTTAAATTTTTCTTT
66 AATTATTTTAACCTTTAGGAAATTATACTTAAAAAATTATTTATAATTACCTTAAATTTTTCTTT
120191688 AATACATGCAAGTCCTAATGGTGGTGGCGCCACTTTTTACCTAGACCAGTCGACTTTTTCATCTA
131 AATACATGCAAGTCCTAATGGTGGTGGCGCCACTTTTTACCTAGACCAGTCGACTTTTTCATCTA
120191753 AAATATTCATACACACTGACAACCGCTGGTTTTGCAGTACCGAATTTTGCAGTCTC
196 AAATATTCATACACACTGACAACCGCTGGTTTTGCAGTACCGAATTTTGCAGTCTC
120191809 AT
1 AT
120191811 GATTGTCTGG
Statistics
Matches: 253, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
251 253 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (251 bp):
ATAGACTAAATTCTTAAAAATAAAAATATATAAATTAAAATTTAAAATTATAAAGGGTACGTAAA
AATTATTTTAACCTTTAGGAAATTATACTTAAAAAATTATTTATAATTACCTTAAATTTTTCTTT
AATACATGCAAGTCCTAATGGTGGTGGCGCCACTTTTTACCTAGACCAGTCGACTTTTTCATCTA
AAATATTCATACACACTGACAACCGCTGGTTTTGCAGTACCGAATTTTGCAGTCTC
Found at i:120204595 original size:48 final size:48
Alignment explanation
Indices: 120204524--120204619 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
120204514 CTTGAAGGCC
120204524 CATTTAAGGGACAAAATGTGAATGTCTGAAAGTTTCAAATCTGAGCTA
1 CATTTAAGGGACAAAATGTGAATGTCTGAAAGTTTCAAATCTGAGCTA
120204572 CATTTAAGGGACAAAATGTGAATGTCTGAAAGTTTCAAATCTGAGCTA
1 CATTTAAGGGACAAAATGTGAATGTCTGAAAGTTTCAAATCTGAGCTA
120204620 AACCTGGTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (48 bp):
CATTTAAGGGACAAAATGTGAATGTCTGAAAGTTTCAAATCTGAGCTA
Found at i:120214796 original size:47 final size:47
Alignment explanation
Indices: 120214742--120214831 Score: 144
Period size: 47 Copynumber: 1.9 Consensus size: 47
120214732 ACATCCATTA
* * *
120214742 ATTATTTTGGCTGATATATTGAACTTGAATTTTTTATTAAAAAAAGG
1 ATTATTTTAGCTGATACAGTGAACTTGAATTTTTTATTAAAAAAAGG
*
120214789 ATTATTTTAGTTGATACAGTGAACTTGAATTTTTTATTAAAAA
1 ATTATTTTAGCTGATACAGTGAACTTGAATTTTTTATTAAAAA
120214832 TATTTTTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (47 bp):
ATTATTTTAGCTGATACAGTGAACTTGAATTTTTTATTAAAAAAAGG
Found at i:120217087 original size:18 final size:18
Alignment explanation
Indices: 120217072--120217125 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
120217062 GTTAACCAGC
120217072 TTTAATAGAGTAACCAAA
1 TTTAATAGAGTAACCAAA
120217090 TTTAATAGAGTAACCAAA
1 TTTAATAGAGTAACCAAA
*
120217108 TTTAATAGAGTAAGCAAA
1 TTTAATAGAGTAACCAAA
120217126 CAAAAAACCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (18 bp):
TTTAATAGAGTAACCAAA
Found at i:120218469 original size:36 final size:36
Alignment explanation
Indices: 120218429--120218497 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
120218419 TGCAAGAAAC
*
120218429 GCAAACTATCCGTTGGCAATATAAAATACAATAAAT
1 GCAAACTATCCGTTCGCAATATAAAATACAATAAAT
120218465 GCAAACTATCCGTTCGCAATATAAAATACAATA
1 GCAAACTATCCGTTCGCAATATAAAATACAATA
120218498 TGTATATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.25
Consensus pattern (36 bp):
GCAAACTATCCGTTCGCAATATAAAATACAATAAAT
Found at i:120220579 original size:20 final size:20
Alignment explanation
Indices: 120220554--120220595 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
120220544 TGAACATTGG
120220554 CATATTGCCATTACATATAT
1 CATATTGCCATTACATATAT
120220574 CATATTGCCATTACATATAT
1 CATATTGCCATTACATATAT
120220594 CA
1 CA
120220596 GTCAATGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (20 bp):
CATATTGCCATTACATATAT
Found at i:120226499 original size:19 final size:19
Alignment explanation
Indices: 120226475--120226569 Score: 149
Period size: 19 Copynumber: 5.0 Consensus size: 19
120226465 CTTTTAGGAC
120226475 ATGCAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
120226494 ATGCAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
*
120226513 A--CAATCTTAGACATGAT
1 ATGCAATCTTAGATATGAT
120226530 ATGCAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
120226549 ATGCAATCTTGAAGATATGAT
1 ATGCAATCTT--AGATATGAT
120226570 CTTGTAATCT
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
17 16 0.23
19 45 0.64
21 9 0.13
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGCAATCTTAGATATGAT
Found at i:120226518 original size:36 final size:37
Alignment explanation
Indices: 120226477--120226569 Score: 143
Period size: 36 Copynumber: 2.5 Consensus size: 37
120226467 TTTAGGACAT
120226477 GCAATCTTAGATATGATATGCAATCTTAGATATGATA
1 GCAATCTTAGATATGATATGCAATCTTAGATATGATA
*
120226514 -CAATCTTAGACATGATATGCAATCTTAGATATGATA
1 GCAATCTTAGATATGATATGCAATCTTAGATATGATA
120226550 TGCAATCTTGAAGATATGAT
1 -GCAATCTT--AGATATGAT
120226570 CTTGTAATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
36 35 0.70
38 7 0.14
40 8 0.16
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (37 bp):
GCAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:120233674 original size:64 final size:64
Alignment explanation
Indices: 120233464--120233674 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
120233454 CTGGGCCAGA
* *
120233464 GCCCTTTTCGGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
120233528 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
120233590 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
120233601 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
120233665 GCCCATTTCA
1 GCCCATTTCA
120233675 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 34
0.62 0.17 0.21
Matches are distributed among these distances:
63 9 0.09
64 24 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:120233676 original size:137 final size:137
Alignment explanation
Indices: 120233442--120233716 Score: 532
Period size: 137 Copynumber: 2.0 Consensus size: 137
120233432 GCCCATTCAC
* *
120233442 GTAATAGTGGTACTGGGCCAGAGCCCTTTTCGGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
120233507 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
120233572 CATTTGG
131 CATTTGG
120233579 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
120233644 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
120233709 CATTTGG
131 CATTTGG
120233716 G
1 G
120233717 GAGACTACTC
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 136 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (137 bp):
GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
CATTTGG
Found at i:120235690 original size:26 final size:26
Alignment explanation
Indices: 120235502--120235689 Score: 322
Period size: 26 Copynumber: 7.2 Consensus size: 26
120235492 CATGAAATTC
* *
120235502 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
120235528 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
120235554 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
120235580 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
120235606 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
120235632 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
120235658 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
120235684 TTATCA
1 TTATCA
120235690 ATTTGTATCA
Statistics
Matches: 156, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 156 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:120239190 original size:43 final size:44
Alignment explanation
Indices: 120239097--120239192 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 44
120239087 ATTGCTTGGG
** *
120239097 GAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTGCCTCAA
1 GAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAA
*
120239141 GAAGATAAGA-C-TCAATCTTCAACCTGC-TCTCTTGCTACCTTAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTTC-CTTGCTACCTCA-A
120239185 GAGATAAG
1 GAGATAAG
120239193 GCTAGTGGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
42 2 0.04
43 31 0.69
44 4 0.09
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
GAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCTACCTCAA
Found at i:120255463 original size:13 final size:13
Alignment explanation
Indices: 120255447--120255482 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
120255437 CAATGCTTTT
120255447 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
*
120255460 GAAAAATGCTGTG
1 GAAAAGTGCTGTG
120255473 GAAAAGTGCT
1 GAAAAGTGCT
120255483 TTTGAGAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.33, T:0.22
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:120255492 original size:13 final size:13
Alignment explanation
Indices: 120255476--120255500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120255466 TGCTGTGGAA
120255476 AAGTGCTTTTGAG
1 AAGTGCTTTTGAG
120255489 AAGTGCTTTTGA
1 AAGTGCTTTTGA
120255501 AAAATTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
AAGTGCTTTTGAG
Found at i:120255502 original size:26 final size:26
Alignment explanation
Indices: 120255438--120255503 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
120255428 CTAGTTTGGC
120255438 AATGCTTTTGAAAAGTGCTGTGGAAA
1 AATGCTTTTGAAAAGTGCTGTGGAAA
* * * * *
120255464 AATGCTGTGGAAAAGTGCTTTTGAGA
1 AATGCTTTTGAAAAGTGCTGTGGAAA
*
120255490 AGTGCTTTTGAAAA
1 AATGCTTTTGAAAA
120255504 ATTTTGTTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (26 bp):
AATGCTTTTGAAAAGTGCTGTGGAAA
Found at i:120265693 original size:22 final size:23
Alignment explanation
Indices: 120265644--120265693 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
120265634 CCCTTTTTTT
*
120265644 AGGGTTAGGGTTTTTAGGGTTTA
1 AGGGTTAGGGTTTTTAGAGTTTA
120265667 A-GGTTAGGGTTTTTTA-AG-TTA
1 AGGGTTAGGG-TTTTTAGAGTTTA
120265688 AGGGTT
1 AGGGTT
120265694 TTTTGGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 7 0.29
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (23 bp):
AGGGTTAGGGTTTTTAGAGTTTA
Found at i:120265695 original size:15 final size:16
Alignment explanation
Indices: 120265663--120265697 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
120265653 GTTTTTAGGG
120265663 TTTAAGGTTAGGGTTT
1 TTTAAGGTTAGGGTTT
120265679 TTTAA-GTTAAGGGTTT
1 TTTAAGGTT-AGGGTTT
120265695 TTT
1 TTT
120265698 GGGTTTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (16 bp):
TTTAAGGTTAGGGTTT
Found at i:120265708 original size:17 final size:16
Alignment explanation
Indices: 120265663--120265711 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
120265653 GTTTTTAGGG
*
120265663 TTTAAGGTTAGGGTTT
1 TTTAAGTTTAGGGTTT
*
120265679 TTTAAGTTAAGGGTTT
1 TTTAAGTTTAGGGTTT
**
120265695 TTTGGGTTTTAGGGTTT
1 TTTAAG-TTTAGGGTTT
120265712 AAAGGTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (16 bp):
TTTAAGTTTAGGGTTT
Found at i:120266641 original size:126 final size:126
Alignment explanation
Indices: 120266430--120266796 Score: 574
Period size: 126 Copynumber: 2.9 Consensus size: 126
120266420 TTTTGAGCAC
* *
120266430 ACGTTTCT-AGACAAATAATGTCGAAAAATGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
1 ACGTTTCTGA-ACAAATAGTGTCG-AAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTG
* * *
120266494 GAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAATAATTCGTAGAAAAATAATTCTAAGTAG
64 GAAAAAGCTCCCATGTGGACGCTATTTTGCTACAGTAGTTCGTAGAAAAATAATTCTAAGTAG
* * *
120266557 AGGTTTTTGAACAAATAGTGTCGAAAACGCTTCAAACAGGATGCACTGTCAGCAAAATTTCTGGA
1 ACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTGGA
* * *
120266622 AAAAGCTCCCACGTGGACGCTATTTTGCTATAGTAGTTCGTAGAAAAATAATTCTGAGTAG
66 AAAAGCTCCCATGTGGACGCTATTTTGCTACAGTAGTTCGTAGAAAAATAATTCTAAGTAG
* *
120266683 ACGTTTCTGAACAAATAGTGTTGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTAGA
1 ACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTGGA
* *
120266748 AAAAGCTCCCATGTGGACGTTTTTTTGCTACAGTAGTTCGTAGAAAAAT
66 AAAAGCTCCCATGTGGACGCTATTTTGCTACAGTAGTTCGTAGAAAAAT
120266797 GAAGCTATAA
Statistics
Matches: 219, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
126 200 0.91
127 18 0.08
128 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (126 bp):
ACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTTCTGGA
AAAAGCTCCCATGTGGACGCTATTTTGCTACAGTAGTTCGTAGAAAAATAATTCTAAGTAG
Found at i:120267774 original size:32 final size:32
Alignment explanation
Indices: 120267733--120267797 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
120267723 TGTATGCATT
*
120267733 TTAGTATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
120267765 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
120267797 T
1 T
120267798 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:120269223 original size:26 final size:26
Alignment explanation
Indices: 120269171--120269223 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
120269161 TTTACAGTTT
*
120269171 TACCCCTAGGAGATAAATTATCAAAA
1 TACCCCTAGGAGATAAATTACCAAAA
* *
120269197 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCAAAA
120269223 T
1 T
120269224 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCAAAA
Found at i:120278294 original size:32 final size:32
Alignment explanation
Indices: 120278258--120278322 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
120278248 TGTATGCATT
120278258 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
120278290 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
120278322 T
1 T
120278323 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:120279829 original size:26 final size:26
Alignment explanation
Indices: 120279800--120279849 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
120279790 TACAGTTTTA
120279800 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
120279826 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
120279850 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:120280063 original size:21 final size:21
Alignment explanation
Indices: 120280037--120280084 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
120280027 ATTCCCCACA
120280037 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
120280058 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
120280079 TTGAGT
1 TGGAGT
120280085 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:120283763 original size:18 final size:18
Alignment explanation
Indices: 120283737--120283778 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
120283727 GACTAGGAAA
* * *
120283737 AGGAAACATATAAGGGTT
1 AGGATACATATAAAGGCT
120283755 AGGATACATATAAAGGCT
1 AGGATACATATAAAGGCT
120283773 AGGATA
1 AGGATA
120283779 TGCACCTGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAAGGCT
Found at i:120284384 original size:7 final size:7
Alignment explanation
Indices: 120284374--120284398 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
120284364 CATAATACAT
120284374 AATACTA
1 AATACTA
120284381 AATACTA
1 AATACTA
120284388 AATACTA
1 AATACTA
120284395 AATA
1 AATA
120284399 TGAAATGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:120285446 original size:48 final size:45
Alignment explanation
Indices: 120285380--120285512 Score: 135
Period size: 48 Copynumber: 2.8 Consensus size: 45
120285370 ATGTAAACAT
* *
120285380 CATAAATGAAAAAA-ATCAAGCAGTATTGAAATTGTAATTATAA-TTG
1 CATAATTGAAAAAATATCAA-TAGTATTGAAATT-TAATTA-AATTTG
*
120285426 CATAATTGAATAAAATATCAAATAGCATTGCAAATTTAATTAAATTTG
1 CATAATTGAA-AAAATATC-AATAGTATTG-AAATTTAATTAAATTTG
*
120285474 CATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CAT-AATTGAAAAAATATC-AATAGTATTG-AAATTTAA
120285513 AATTATCATT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
46 9 0.12
47 6 0.08
48 46 0.62
49 13 0.18
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (45 bp):
CATAATTGAAAAAATATCAATAGTATTGAAATTTAATTAAATTTG
Found at i:120286808 original size:15 final size:17
Alignment explanation
Indices: 120286772--120286808 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
120286762 ATTTTCAATC
120286772 TCAATTTCTATTTATAA
1 TCAATTTCTATTTATAA
120286789 T-AATTT-TATTT-TAA
1 TCAATTTCTATTTATAA
120286803 TCAATT
1 TCAATT
120286809 AGCATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.21
15 9 0.47
16 5 0.26
17 1 0.05
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (17 bp):
TCAATTTCTATTTATAA
Found at i:120291973 original size:23 final size:23
Alignment explanation
Indices: 120291945--120291991 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
120291935 TGATAAAAAA
120291945 TGGTATTCATATAACATGATTTG
1 TGGTATTCATATAACATGATTTG
120291968 TGGTATTCATATAACATGATTTG
1 TGGTATTCATATAACATGATTTG
120291991 T
1 T
120291992 CTGCTTTCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.45
Consensus pattern (23 bp):
TGGTATTCATATAACATGATTTG
Found at i:120293234 original size:76 final size:76
Alignment explanation
Indices: 120293097--120293255 Score: 219
Period size: 76 Copynumber: 2.1 Consensus size: 76
120293087 CCAAAAAAGG
** * * * *
120293097 GGTTGAACAGATTAACTTAGAAATTGCTTGAAATTCCTAAAAATCGAAAATTAGGACAAAAAATG
1 GGTTGAATTGATTAACTTAGAAATAGCTTGAAATTACTAAAAATCGAAAATCAGGAAAAAAAATG
120293162 ATAGTTGAACA
66 ATAGTTGAACA
* * * *
120293173 TGTTGAATTGATTAACTTAGAAATAGCTTGAAATTAGTAAAAATCGAAAATCATGAAAAAAATTG
1 GGTTGAATTGATTAACTTAGAAATAGCTTGAAATTACTAAAAATCGAAAATCAGGAAAAAAAATG
*
120293238 ATAGTTGAATA
66 ATAGTTGAACA
120293249 GGTTGAA
1 GGTTGAA
120293256 CCAAATTAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.29
Consensus pattern (76 bp):
GGTTGAATTGATTAACTTAGAAATAGCTTGAAATTACTAAAAATCGAAAATCAGGAAAAAAAATG
ATAGTTGAACA
Found at i:120296850 original size:26 final size:26
Alignment explanation
Indices: 120296813--120296947 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
120296803 TGATACAAAT
*
120296813 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120296839 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
120296864 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120296890 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120296916 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120296942 TGATAA
1 TGATAA
120296948 GAATTTCATG
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:120296868 original size:51 final size:52
Alignment explanation
Indices: 120296813--120296947 Score: 236
Period size: 51 Copynumber: 2.6 Consensus size: 52
120296803 TGATACAAAT
120296813 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
*
120296864 TGATAATAGGTTAGATAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
120296916 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
120296948 GAATTTCATG
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
51 46 0.58
52 33 0.42
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:120305347 original size:21 final size:20
Alignment explanation
Indices: 120305297--120305377 Score: 90
Period size: 21 Copynumber: 4.0 Consensus size: 20
120305287 TGAAATGATT
*
120305297 CTTTTCAATCAATTGTTTTCA
1 CTTTTCAATCAATTGTTTT-G
* *
120305318 CTTTACAATCAATTATTTTG
1 CTTTTCAATCAATTGTTTTG
**
120305338 CTGTTTCAATTGATTGTTTTG
1 CT-TTTCAATCAATTGTTTTG
*
120305359 CTTTTCAATCGATTGTTTT
1 CTTTTCAATCAATTGTTTT
120305378 CGCTATCTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
20 18 0.35
21 33 0.65
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.54
Consensus pattern (20 bp):
CTTTTCAATCAATTGTTTTG
Found at i:120306106 original size:18 final size:18
Alignment explanation
Indices: 120306083--120306139 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
120306073 ATCGTTTATG
*
120306083 GTACTATTCACGTATGCA
1 GTACTATTCACGTATACA
*
120306101 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
*
120306119 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
120306137 GTA
1 GTA
120306140 GTTGGGATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:120314402 original size:43 final size:43
Alignment explanation
Indices: 120314336--120314437 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 43
120314326 ATTTGAAAAA
*
120314336 AAACACCGCTAAAAGTCATGGCCTTTAGCGGTGCTTTTACCAC
1 AAACACCGCTAAAAGTCATGGCCTTTAGCGGCGCTTTTACCAC
* * * *
120314379 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCCCAT
1 AAACACCGCTAAAAGTCATGGCCTTTAGCGGCGCTTTTACCAC
120314422 AAACACCGCTAAAAGT
1 AAACACCGCTAAAAGT
120314438 TATGAAATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (43 bp):
AAACACCGCTAAAAGTCATGGCCTTTAGCGGCGCTTTTACCAC
Found at i:120314611 original size:31 final size:30
Alignment explanation
Indices: 120314569--120314629 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
120314559 AAAATTCATT
120314569 ATCAAAATAAAATAAA-AATAAAAATATAGA
1 ATCAAAATAAAATAAATAATAAAAAT-TAGA
120314599 ATCAAAACTAAAATAAATAATAAAAATTAGA
1 ATCAAAA-TAAAATAAATAATAAAAATTAGA
120314630 TTAAATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 7 0.24
31 13 0.45
32 9 0.31
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.21
Consensus pattern (30 bp):
ATCAAAATAAAATAAATAATAAAAATTAGA
Found at i:120314624 original size:19 final size:19
Alignment explanation
Indices: 120314579--120314625 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
120314569 ATCAAAATAA
*
120314579 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
120314598 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
120314617 AATAAAAAT
1 AATAAAAAT
120314626 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:120318777 original size:19 final size:19
Alignment explanation
Indices: 120318753--120318792 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
120318743 AAATATTGCA
120318753 CATAATTCATTCCTTGTTT
1 CATAATTCATTCCTTGTTT
120318772 CATAATTCATTCCTTGTTT
1 CATAATTCATTCCTTGTTT
120318791 CA
1 CA
120318793 CTATAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (19 bp):
CATAATTCATTCCTTGTTT
Found at i:120319048 original size:7 final size:7
Alignment explanation
Indices: 120319036--120319164 Score: 75
Period size: 7 Copynumber: 18.1 Consensus size: 7
120319026 ACTAATTAAT
120319036 CTAAACC
1 CTAAACC
120319043 CTAAACC
1 CTAAACC
*
120319050 TCTTAACCC
1 -C-TAAACC
*
120319059 CT-ATCC
1 CTAAACC
*
120319065 CATAAACA
1 C-TAAACC
*
120319073 CTAAACT
1 CTAAACC
120319080 CTAAACC
1 CTAAACC
*
120319087 CTTAACC
1 CTAAACC
*
120319094 CTTAACC
1 CTAAACC
*
120319101 CCAAACC
1 CTAAACC
*
120319108 CTTACACC
1 C-TAAACC
*
120319116 TTAAACTC
1 CTAAAC-C
120319124 C--AACC
1 CTAAACC
*
120319129 CTAACCC
1 CTAAACC
120319136 CTAAACC
1 CTAAACC
*
120319143 CTAAATC
1 CTAAACC
* *
120319150 ATAATCC
1 CTAAACC
120319157 CTAAACC
1 CTAAACC
120319164 C
1 C
120319165 ATAATTCATC
Statistics
Matches: 92, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
5 2 0.02
6 7 0.08
7 68 0.74
8 10 0.11
9 5 0.05
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:120319244 original size:46 final size:46
Alignment explanation
Indices: 120319191--120319280 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
120319181 CTTCAAATAC
* *
120319191 TAGTTAACTCCTAAACCTTAAATCCTAAACCACATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCACATATCTTAAACTA
*
120319237 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCACATATCTTAAAC
120319281 CATAAACCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCACATATCTTAAACTA
Found at i:120319260 original size:7 final size:7
Alignment explanation
Indices: 120319246--120319299 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
120319236 ATAGTTAACT
120319246 CATAAAC
1 CATAAAC
*
120319253 CTTAAAC
1 CATAAAC
*
120319260 CCTAAAC
1 CATAAAC
* *
120319267 CATATAT
1 CATAAAC
*
120319274 CTTAAAC
1 CATAAAC
120319281 CATAAAC
1 CATAAAC
120319288 CATAAAC
1 CATAAAC
*
120319295 TATAA
1 CATAA
120319300 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:120319277 original size:21 final size:21
Alignment explanation
Indices: 120319207--120319291 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 21
120319197 ACTCCTAAAC
*
120319207 CTTAAATCC-TAAACCACATAT
1 CTTAAA-CCATAAACCATATAT
* * *
120319228 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
120319253 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
120319274 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
120319292 AACTATAATG
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
20 1 0.02
21 30 0.60
22 3 0.06
24 3 0.06
25 13 0.26
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:120319752 original size:43 final size:43
Alignment explanation
Indices: 120319726--120319888 Score: 272
Period size: 43 Copynumber: 3.8 Consensus size: 43
120319716 AAAAAAACCC
*
120319726 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCTG
1 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCCG
*
120319769 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCTG
1 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCCG
* *
120319812 CTAAAGGTCAAGGCTTTTAGTGGCGTTTGTGGGAAAAGCGCCG
1 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCCG
* *
120319855 CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGGA
1 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGA
120319889 TTTTTTACAA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 115 1.00
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.25
Consensus pattern (43 bp):
CTAAAGGTCAAGGCTTTTAGCGGCGTTTGCGGGAAAAGCGCCG
Found at i:120319996 original size:31 final size:31
Alignment explanation
Indices: 120319961--120320043 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
120319951 CTTCCTGCAT
* *
120319961 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
120319992 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
120320023 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
120320044 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:120325951 original size:9 final size:9
Alignment explanation
Indices: 120325937--120326162 Score: 134
Period size: 9 Copynumber: 24.6 Consensus size: 9
120325927 CATTTAAGTA
120325937 TTATGTAAG
1 TTATGTAAG
*
120325946 TTATGTAAT
1 TTATGTAAG
*
120325955 TTATGATATG
1 TTATG-TAAG
* * *
120325965 ATATAT-AT
1 TTATGTAAG
*
120325973 TTATGTAAA
1 TTATGTAAG
* *
120325982 TTATAT-AT
1 TTATGTAAG
*
120325990 TTATCTAAG
1 TTATGTAAG
*
120325999 TTATATAAG
1 TTATGTAAG
120326008 TTATGTAAG
1 TTATGTAAG
*
120326017 TTATGTAAA
1 TTATGTAAG
*
120326026 TTATGATATAAAA
1 TTATG---T-AAG
*
120326039 TATATTTAAG
1 T-TATGTAAG
120326049 TATTATGTAAG
1 --TTATGTAAG
120326060 TTATGTAAG
1 TTATGTAAG
* *
120326069 TTATAT-AT
1 TTATGTAAG
*
120326077 TTATCTAAG
1 TTATGTAAG
*
120326086 TTATATAAG
1 TTATGTAAG
*
120326095 TTATATAAG
1 TTATGTAAG
*
120326104 TTATGTATG
1 TTATGTAAG
**
120326113 TTACATAAG
1 TTATGTAAG
120326122 TTATGTAAG
1 TTATGTAAG
* *
120326131 TTATATATG
1 TTATGTAAG
*
120326140 TTATATAAG
1 TTATGTAAG
*
120326149 TTATGTAAA
1 TTATGTAAG
120326158 TTATG
1 TTATG
120326163 ATATCAAATA
Statistics
Matches: 169, Mismatches: 37, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
8 16 0.09
9 129 0.76
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:120326016 original size:18 final size:18
Alignment explanation
Indices: 120325937--120326162 Score: 152
Period size: 18 Copynumber: 12.3 Consensus size: 18
120325927 CATTTAAGTA
* *
120325937 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
120325955 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
120325973 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
120325990 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
120326008 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
120326026 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
120326049 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
120326069 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
120326086 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
120326104 TTATGTATGTTACATAAG
1 TTATGTAAGTTATATAAG
*
120326122 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
120326140 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
120326158 TTATG
1 TTATG
120326163 ATATCAAATA
Statistics
Matches: 165, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
17 37 0.22
18 95 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:120326029 original size:27 final size:27
Alignment explanation
Indices: 120325990--120326162 Score: 150
Period size: 27 Copynumber: 6.2 Consensus size: 27
120325980 AATTATATAT
*
120325990 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
120326017 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
120326049 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
120326077 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
120326104 TTATGTATGTTACATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
120326131 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
120326158 TTATG
1 TTATG
120326163 ATATCAAATA
Statistics
Matches: 118, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
26 22 0.19
27 57 0.48
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.46
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:120326051 original size:114 final size:114
Alignment explanation
Indices: 120325913--120326134 Score: 295
Period size: 114 Copynumber: 1.9 Consensus size: 114
120325903 ACTAGTTATG
* * * *
120325913 TATGATATGATATACATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATACATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* * *
120325977 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTACATAAGTTATGTAAGTTATGTAAAT
* * *
120326027 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATACATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
120326092 AAGTTATATAAGTTATGTATGTTACATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTACATAAGTTATGTAAGTTAT
120326135 ATATGTTATA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 71 0.76
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATACATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTACATAAGTTATGTAAGTTATGTAAAT
Found at i:120326287 original size:15 final size:15
Alignment explanation
Indices: 120326267--120326322 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
120326257 AAGTAGCGGG
120326267 ATTAAATAATATTTA
1 ATTAAATAATATTTA
120326282 ATTAAATAATATTT-
1 ATTAAATAATATTTA
120326296 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
120326311 ATTAAATAATAT
1 ATTAAATAATAT
120326323 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:120326563 original size:24 final size:24
Alignment explanation
Indices: 120326499--120326566 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
120326489 ACTTAAATGG
*
120326499 TAAAATGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
120326523 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
120326547 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
120326567 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:120327459 original size:373 final size:372
Alignment explanation
Indices: 120326657--120327565 Score: 1721
Period size: 373 Copynumber: 2.4 Consensus size: 372
120326647 TGAAACATAC
* *
120326657 AATTTTTT-AGATTCATCATACGTGGCGTTGTTACACCTAAGGAGGATCTATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
120326721 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
120326786 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
120326851 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
*
120326916 AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
261 AAATCAAAAAAGAAACGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
120326981 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
120327028 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGAAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
120327093 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
120327158 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
120327223 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAAT
* *
120327288 AATATCAAAAAAGAAACGTAGTTTAATTTTTATCAGTAAATTGGAAATAAATTAAGGTTATATAA
260 AAAATCAAAAAAGAAACGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
*
120327353 ATATTCAATAGTAAATGAGCTTGATAGAACTTTTTTCAAGTCTTTTTG
325 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
120327401 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
120327466 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
* *
120327531 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTT
120327566 AATGGACAAG
Statistics
Matches: 526, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
371 8 0.02
372 223 0.42
373 295 0.56
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (372 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
AAATCAAAAAAGAAACGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:120328445 original size:19 final size:22
Alignment explanation
Indices: 120328407--120328447 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 22
120328397 CAGAAACCCA
120328407 ACCATATCCAACCGTATACACC
1 ACCATATCCAACCGTATACACC
120328429 ACCATA-CCAACC-T-TACACC
1 ACCATATCCAACCGTATACACC
120328448 GTGTGGGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 6 0.32
22 6 0.32
ACGTcount: A:0.37, C:0.44, G:0.02, T:0.17
Consensus pattern (22 bp):
ACCATATCCAACCGTATACACC
Found at i:120328546 original size:27 final size:28
Alignment explanation
Indices: 120328509--120328648 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
120328499 AGCATGGCTG
* *
120328509 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
120328535 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
120328563 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
120328590 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
120328617 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
120328644 CCAGA
1 CCAGA
120328649 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:120329046 original size:26 final size:26
Alignment explanation
Indices: 120329010--120329145 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
120329000 CATGAAATTC
120329010 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120329036 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120329062 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
120329088 TTATCATGGAACATTTACGTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
120329114 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
120329140 TTATCA
1 TTATCA
120329146 ATTTGTACCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120333693 original size:15 final size:15
Alignment explanation
Indices: 120333673--120333704 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
120333663 AAATAATAAT
*
120333673 TTATATATATTTATC
1 TTATATACATTTATC
120333688 TTATATACATTTATC
1 TTATATACATTTATC
120333703 TT
1 TT
120333705 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:120334150 original size:20 final size:18
Alignment explanation
Indices: 120334124--120334174 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
120334114 TTACACCCTA
120334124 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
120334142 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
120334160 AATATATATATATAA
1 AATATATAT-TATAA
120334175 CGAGGGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:120334525 original size:41 final size:41
Alignment explanation
Indices: 120334480--120334669 Score: 290
Period size: 41 Copynumber: 4.6 Consensus size: 41
120334470 TTACTTTTTT
*
120334480 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
*
120334521 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
* * * * *
120334562 GCGGCGCTTTTCTAGAAGCGCCACTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
* *
120334603 GCGGCGTTTTTCCAGAAGCGCCGCTAAAACGTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
*
120334644 GCTGCGTTTTTCCAAAAGCGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
120334670 TTGTACAGTT
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 137 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
Found at i:120334752 original size:41 final size:41
Alignment explanation
Indices: 120334655--120334774 Score: 152
Period size: 41 Copynumber: 2.9 Consensus size: 41
120334645 CTGCGTTTTT
* *
120334655 CCAAAAGCGCCGCTATTG-TACAGTTTTTAGCGGCGTTTGGG
1 CCAAAAACGCCGCTATTGCT-CAGTTTTTAGCGGCGTTTGGA
* *
120334696 CCAAGAACACCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
* * * *
120334737 TCAAAAACGCTGCTATTGCTCTGTTTTTTGCGGCGTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTT
120334775 TATTGCAAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 67 0.99
42 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
Found at i:120334877 original size:41 final size:40
Alignment explanation
Indices: 120334832--120334938 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
120334822 AACGCCACTA
* *
120334832 AAAACGCCGCTAATGCTCTGTTTTTTGTGGTGTTTTTTACT
1 AAAACGCCGCTATTGCTCTGTTTTTTGTGGCG-TTTTTACT
* **
120334873 AAAACGCCGCTATTGCTCTGTTTTTAGTGGCGTTTTTGGT
1 AAAACGCCGCTATTGCTCTGTTTTTTGTGGCGTTTTTACT
* *
120334913 AAAACGCCGCTATTGCTATGTGTTTT
1 AAAACGCCGCTATTGCTCTGTTTTTT
120334939 ACAATTTTTG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 29 0.50
41 29 0.50
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (40 bp):
AAAACGCCGCTATTGCTCTGTTTTTTGTGGCGTTTTTACT
Found at i:120334939 original size:41 final size:41
Alignment explanation
Indices: 120334832--120334939 Score: 146
Period size: 41 Copynumber: 2.6 Consensus size: 41
120334822 AACGCCACTA
* * *
120334832 AAAACGCCGCTAATGCTCTGTTTTTTGTGGTGTTTTTTACT
1 AAAACGCCGCTATTGCTCTGTTTTTAGTGGCGTTTTTTACT
**
120334873 AAAACGCCGCTATTGCTCTGTTTTTAGTGGCG-TTTTTGGT
1 AAAACGCCGCTATTGCTCTGTTTTTAGTGGCGTTTTTTACT
*
120334913 AAAACGCCGCTATTGCTATGTGTTTTA
1 AAAACGCCGCTATTGCTCTGT-TTTTA
120334940 CAATTTTTGC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 26 0.43
41 34 0.57
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.43
Consensus pattern (41 bp):
AAAACGCCGCTATTGCTCTGTTTTTAGTGGCGTTTTTTACT
Found at i:120338854 original size:38 final size:39
Alignment explanation
Indices: 120338778--120338863 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
120338768 GGACTTTAGC
* * * *
120338778 CCGGACATATTTCCAGCACGAAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGAACCATAAGT
*
120338817 CCGGATATAATTCCAGCAC-TAGCCTGCGAACCATAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGAACCATAAGT
120338855 CCGGATATA
1 CCGGATATA
120338864 CATCACTGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 25 0.60
39 17 0.40
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACGAAGCCTGCGAACCATAAGT
Found at i:120347575 original size:16 final size:16
Alignment explanation
Indices: 120347550--120347580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120347540 TATTGATTTC
120347550 ATATTATTCTATGTAA
1 ATATTATTCTATGTAA
*
120347566 ATATTTTTCTATGTA
1 ATATTATTCTATGTA
120347581 TGTATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
ATATTATTCTATGTAA
Found at i:120349137 original size:27 final size:28
Alignment explanation
Indices: 120349100--120349239 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
120349090 AGCATGGCTG
*
120349100 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGACAGAGCCA
*
120349126 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGACAGAGCCA
*
120349154 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
*
120349181 CCAGAT-CAGATATTTGTGACAGAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
* * *
120349208 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGACAGAGCCA
120349235 CCAGA
1 CCAGA
120349240 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGACAGAGCCA
Found at i:120349159 original size:54 final size:54
Alignment explanation
Indices: 120349100--120349239 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
120349090 AGCATGGCTG
* *
120349100 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGACAGAGCCA
* * *
120349154 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGACAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGACAGAGCCA
* * * *
120349208 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
120349240 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGACAGAGCCA
Found at i:120350885 original size:26 final size:26
Alignment explanation
Indices: 120350856--120350965 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
120350846 CATGAAATTC
120350856 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120350882 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
120350908 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
120350934 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
120350960 TTATCA
1 TTATCA
120350966 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120362241 original size:54 final size:55
Alignment explanation
Indices: 120362171--120362277 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 55
120362161 AAAAAAAAAG
120362171 GGGCCAAAGTGAAAACCAGCAAAGGGCACTTTAAGAC-CTAATAAAAAT-AAAATA
1 GGGCCAAAGTGAAAACCAGCAAAGGGCACTTTAAGACTC-AATAAAAATGAAAATA
* *
120362225 GGGCCAAAGTGAAAACCTGCAAAGGGCTCTTTAAGACTCAATAAAAATGAAAA
1 GGGCCAAAGTGAAAACCAGCAAAGGGCACTTTAAGACTCAATAAAAATGAAAA
120362278 AGGAAAAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
54 44 0.90
55 5 0.10
ACGTcount: A:0.48, C:0.17, G:0.20, T:0.16
Consensus pattern (55 bp):
GGGCCAAAGTGAAAACCAGCAAAGGGCACTTTAAGACTCAATAAAAATGAAAATA
Found at i:120363724 original size:176 final size:175
Alignment explanation
Indices: 120363424--120364037 Score: 822
Period size: 176 Copynumber: 3.5 Consensus size: 175
120363414 TTGGTGAAAG
* * * * * *
120363424 TTGAATATCTTATCTCCCTGAAGTTGCAGCAGAGTAGATCGAAGATGATGAACCTTATCTCCATG
1 TTGAAGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATG
* *
120363489 TATCGGCAATGGAGTAGATTTTACCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGA
66 TATCGGCAATGGAGTAGATTTTGCC-CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
*
120363554 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCATACTGAAGA
130 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGA
* * * *
120363600 TTAAAGATCTTATCTCCCTAAAGTTACAGCGGAGAAGATCGAAGATGGTGAATCTTATCTCCATA
1 TTGAAGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATG
* *
120363665 TATCGGCAATGGAGTAGATTTTGCCGCCAGCCTTATCTCCCTGAGGTAGTAAGAGAGCAGGTTGA
66 TATCGGCAATGGAGTAGATTTTGCC-CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
120363730 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGA
130 AGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGA
* * * * *
120363776 TTGAAGATCTTATCACCTTGAAGTTGCAGCGGAGCAGATCGAAAGA-GGCGAATCTTATCTCTAT
1 TTGAAGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCG-AAGATGGTGAATCTTATCTCCAT
** * * *
120363840 GTATCAACAATGGAGTAGATTTAAGCCCCAAGACTTATCTCTCTGAGGTAGCAAGAGAGCATGTT
65 GTATCGGCAATGGAGTAGATTT-TGCCCC-AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
120363905 -AAAAATTGAGTCTTATC-TTCTTGAGGTAGCAAGGAAGCAGACTGAAGA
128 GAAGAA-TGAGTCTTATCTTTC-TGAGGTAGCAAGAAAGCAGACTGAAGA
* ** ** * *
120363953 CTGAAGATCTTATCTCCCT-AAGCAATTGTGGAGCAGATCGAGGATGGTGAATCTTATCTCCATG
1 TTGAAGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATG
*
120364017 TATCGGCAATGGAGCAGATTT
66 TATCGGCAATGGAGTAGATTT
120364038 AAGCCACTAG
Statistics
Matches: 384, Mismatches: 48, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
175 3 0.01
176 290 0.76
177 91 0.24
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (175 bp):
TTGAAGATCTTATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGATGGTGAATCTTATCTCCATG
TATCGGCAATGGAGTAGATTTTGCCCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
GAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGA
Found at i:120363774 original size:43 final size:45
Alignment explanation
Indices: 120363696--120363789 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 45
120363686 TGCCGCCAGC
* * **
120363696 CTTATCTCCCTGAGGTAGTAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
** *
120363739 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
120363784 CTTATC
1 CTTATC
120363790 ACCTTGAAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 33 0.79
44 2 0.05
45 7 0.17
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (45 bp):
CTTATCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:120365940 original size:16 final size:16
Alignment explanation
Indices: 120365915--120365945 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120365905 TATTGATTTC
120365915 ATATTATTCTATGTAA
1 ATATTATTCTATGTAA
*
120365931 ATATTTTTCTATGTA
1 ATATTATTCTATGTA
120365946 TGTATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
ATATTATTCTATGTAA
Found at i:120368767 original size:18 final size:18
Alignment explanation
Indices: 120368744--120368780 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
120368734 AAGAAATTGT
120368744 TGTAAACAATAGATTTGC
1 TGTAAACAATAGATTTGC
120368762 TGTAAACAATAGATTTGC
1 TGTAAACAATAGATTTGC
120368780 T
1 T
120368781 AACACATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (18 bp):
TGTAAACAATAGATTTGC
Found at i:120369432 original size:13 final size:13
Alignment explanation
Indices: 120369395--120369432 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
120369385 ACACTTAAAT
120369395 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
120369408 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
120369421 TTTTCAAAAGCA
1 TTTTCAAAAGCA
120369433 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:120372956 original size:9 final size:9
Alignment explanation
Indices: 120372929--120372964 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
120372919 TTTAACTTCA
*
120372929 ATTTATTTT
1 ATTTTTTTT
120372938 ATTTTCTTTT
1 ATTTT-TTTT
120372948 ATTTTTTTT
1 ATTTTTTTT
120372957 ATTTTTTT
1 ATTTTTTT
120372965 ACAAGCTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:120377319 original size:12 final size:12
Alignment explanation
Indices: 120377304--120377337 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
120377294 ATGCAGAAGG
120377304 AGATGCAAGAAC
1 AGATGCAAGAAC
*
120377316 AGATGCAAGCAC
1 AGATGCAAGAAC
*
120377328 AAATGCAAGA
1 AGATGCAAGA
120377338 GCAATTGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.18, G:0.24, T:0.09
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:120385387 original size:42 final size:43
Alignment explanation
Indices: 120385279--120385398 Score: 136
Period size: 42 Copynumber: 2.8 Consensus size: 43
120385269 CATCATGGCA
* * * *
120385279 AATCTAATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAA-CCACT
* * * *
120385323 AACCTTATCTCCCTAAAATTGCAGTGGAGTAGATTGAA-CA-T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAACCACT
120385364 ATATCTTATCTCCCTGAAGTTGCAGTGGAGTAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGAT
120385399 CGAAAATAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.03
42 32 0.50
44 30 0.47
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAACCACT
Found at i:120385561 original size:45 final size:44
Alignment explanation
Indices: 120385461--120385581 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 44
120385451 ACAAATCATG
* *
120385461 GCGAATCTTATCTCCCTGAAGTTGCAGTTGAGCAGACTAAATATA
1 GCGAATCTTAT-TCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA
* * ** *
120385506 GTGAACCTTATTCCTCTGAAGTTGCAGTGGAGC-GGTTCGAAGATA
1 GCGAATCTTATTCC-CTGAAGTTGCAGTGGAGCAGACT-AAAGATA
*
120385551 GCGAATCTTATTTCCCTGAAGTTGCAATGGA
1 GCGAATCTTA-TTCCCTGAAGTTGCAGTGGA
120385582 ACAAGATTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
44 5 0.08
45 54 0.86
46 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (44 bp):
GCGAATCTTATTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA
Found at i:120388808 original size:26 final size:26
Alignment explanation
Indices: 120388779--120388857 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
120388769 TTTGTACTTG
120388779 TTTTAAATCTCTTCATATATTATTTA
1 TTTTAAATCTCTTCATATATTATTTA
* * * * **
120388805 TTTTGAATCATTTTTAT-TATTACTCG
1 TTTTAAATC-TCTTCATATATTATTTA
*
120388831 TTTTAAATTTTCTTCAATATATTATTT
1 TTTTAAA-TCTCTTC-ATATATTATTT
120388858 CTATAAAATT
Statistics
Matches: 37, Mismatches: 12, Indels: 6
0.67 0.22 0.11
Matches are distributed among these distances:
26 23 0.62
27 8 0.22
28 6 0.16
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.59
Consensus pattern (26 bp):
TTTTAAATCTCTTCATATATTATTTA
Found at i:120397900 original size:20 final size:19
Alignment explanation
Indices: 120397872--120397929 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
120397862 TAGTGTATAC
* *
120397872 ATTACTTTTACCATTCTTTT
1 ATTATTTTTACCATT-ATTT
**
120397892 ATTATTTTTAATATTATTT
1 ATTATTTTTACCATTATTT
120397911 ATTATTATTTACCATTATT
1 ATTATT-TTTACCATTATT
120397930 GTCATCATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 9 0.29
20 22 0.71
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTATTTTTACCATTATTT
Found at i:120397916 original size:10 final size:10
Alignment explanation
Indices: 120397889--120397948 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
120397879 TTACCATTCT
120397889 TTTATTATT-
1 TTTATTATTA
*
120397898 TTTAATATTA
1 TTTATTATTA
120397908 TTTATTATTA
1 TTTATTATTA
**
120397918 TTTACCATTA
1 TTTATTATTA
*
120397928 TTGTCATCATTA
1 TT-T-ATTATTA
120397940 -TTATTATTA
1 TTTATTATTA
120397949 GTATATTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 14 0.33
10 20 0.48
11 2 0.05
12 6 0.14
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTATTATTA
Found at i:120398047 original size:23 final size:21
Alignment explanation
Indices: 120397997--120398043 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
120397987 ATTAATATTT
*
120397997 ATATATTTATATATTTTATGC
1 ATATATTTATATATTTTATGA
120398018 ATATATTTATAGTTATTTT-TGA
1 ATATATTTATA--TATTTTATGA
120398040 ATAT
1 ATAT
120398044 TATTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 6 0.26
23 6 0.26
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
ATATATTTATATATTTTATGA
Found at i:120398096 original size:24 final size:24
Alignment explanation
Indices: 120398069--120398125 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
120398059 TAAATATATG
* *
120398069 TATACATATTTAAATACTATATTA
1 TATACATATTTAAATACCACATTA
* * *
120398093 TATACGTATTTTAATACCACGTTA
1 TATACATATTTAAATACCACATTA
120398117 TATACATAT
1 TATACATAT
120398126 ATTTATATCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (24 bp):
TATACATATTTAAATACCACATTA
Found at i:120398317 original size:2 final size:2
Alignment explanation
Indices: 120398310--120398348 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
120398300 ATGTATACAT
120398310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120398349 CTTTTAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:120400900 original size:19 final size:19
Alignment explanation
Indices: 120400876--120400921 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
120400866 CTTCCTTTAT
*
120400876 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
*
120400895 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATCA
120400914 TTTGCATT
1 TTTGCATT
120400922 AGACTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:120403618 original size:17 final size:16
Alignment explanation
Indices: 120403589--120403638 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
120403579 TCATCAAATT
*
120403589 CAAAAAAACAAAAGGAA
1 CAAAAAAA-AAAAAGAA
120403606 CAAAAGAAAAAAAAGAA
1 CAAAA-AAAAAAAAGAA
*
120403623 AAAAAAAAAGAAAAGA
1 CAAAAAAAA-AAAAGA
120403639 TGCTAAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 4 0.14
17 22 0.76
18 3 0.10
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAAGAA
Found at i:120403629 original size:12 final size:12
Alignment explanation
Indices: 120403612--120403636 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
120403602 GGAACAAAAG
120403612 AAAAAAAAGAAA
1 AAAAAAAAGAAA
120403624 AAAAAAAAGAAA
1 AAAAAAAAGAAA
120403636 A
1 A
120403637 GATGCTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:120405450 original size:64 final size:64
Alignment explanation
Indices: 120405349--120405475 Score: 218
Period size: 64 Copynumber: 2.0 Consensus size: 64
120405339 ATATAATAAT
**
120405349 ACATTTAGTTAGGAGCATTTGATTCATTTCGGTCATAGCATCCTAATTATTTGACATAAGCATC
1 ACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATC
* *
120405413 ACATTTATTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 ACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
120405476 AGATACATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (64 bp):
ACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATC
Found at i:120405652 original size:44 final size:44
Alignment explanation
Indices: 120405592--120406272 Score: 194
Period size: 44 Copynumber: 15.6 Consensus size: 44
120405582 TTTACAGATC
* * * *
120405592 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGACT
1 TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * * *
120405636 TTAAACCCCTAAGCAGTAGGGTAACAGGTTGAA-TTTACAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * *
120405678 CTTAAACCCCTAAGAAGTAGGGAAACAGATCAAAGGTGAT-GAGCC
1 -TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGA-CT
* * * *
120405723 TT-AACGCCCTAAGCAGTAGGGTAGCAG-GCTGAAGATTATAGATCT
1 TTAAAC-CCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATAGA-CT
* * * * * *
120405768 TGT---CTCCCTAAACAGTAGTGG-AGCAGATCGACGACGT-ATGGGCC
1 T-TAAAC-CCCTAAGCAGTAG-GGTAACAGATCGA--AGGTGATAGACT
* * ** *
120405812 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTAAATTTATAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * ** * *
120405854 CTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATTGAAGACGA-AGGGCC
1 -TTAAAC-CCCTAAGCAGTAG-GGTAACAGATCGAAGGTGATA-GACT
* * * * *
120405899 TTAAACCCCTAAGCAGTAGGGTAATAG-GCTGAA-TTTACAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATAGACT
* * ** * * *
120405941 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCC
1 -TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * *
120405986 TTAAACCTCTAAGCAGTAGGGTAACAG-GCTGAA-TTTATAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATAGACT
* ** * * * * * *
120406028 CTTAACCCCCTAAAAAGTAGGGAAACAGATCAAAGGCGATGGGCC
1 -TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * *
120406073 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAA-TTTACAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATC-GAAGGTGATAGACT
* * * * * * * * *
120406115 CTCATCACCCTAAGTAGTAGGGAAACAGATCGAAGGCGATGGGCC
1 TTAAAC-CCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * ** * *
120406160 TTAAACCCCTAAGCAGTAGGGTAAC-G-GCTAAATTTACAGA-T
1 TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
* * * * *
120406201 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-AGAGGTAATAGGCC
1 -TTAAACCCCTAAGCAGTAGGGTAACAGATCGA-AGGTGATAGACT
* *
120406246 TTAAACCCCTAAGTAGTAAGGTAACAG
1 TTAAACCCCTAAGCAGTAGGGTAACAG
120406273 GCTAGAAATT
Statistics
Matches: 438, Mismatches: 153, Indels: 92
0.64 0.22 0.13
Matches are distributed among these distances:
42 36 0.08
43 148 0.34
44 219 0.50
45 31 0.07
46 4 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (44 bp):
TTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGTGATAGACT
Found at i:120405658 original size:87 final size:87
Alignment explanation
Indices: 120405547--120406290 Score: 935
Period size: 87 Copynumber: 8.5 Consensus size: 87
120405537 AATTCACAAC
*
120405547 CCTT-AACTCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAG
*
120405611 GGAAACAGATCGAAGGCGATGGA
65 GGAAACAGATCGAAGGCGATGGG
* * * * *
120405634 CTTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTTACAGATCTTAAACCCCTAAGAAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
* * *
120405699 GAAACAGATCAAAGGTGATGAG
66 GAAACAGATCGAAGGCGATGGG
* * ** * *
120405721 CCTT-AACGCCCTAAGCAGTAGGGTAGCAGGCTGAAGA-TTATAGATCTTGTCTCCCTAAACAGT
1 CCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AA-ATTTACAGATCTTAACCCCCTAAGCAGT
* * *
120405784 AGTGG-AGCAGATCGACGACGTATGGG
63 AG-GGAAACAGATCGAAGGCG-ATGGG
* * *
120405810 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTATAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAG-
* * * *
120405875 GG-AGCAGATTGAAGACGAAGGG
65 GGAAACAGATCGAAGGCGATGGG
* *
120405897 CCTTAAACCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
*
120405962 GAAACAGATCGAAGGCAATGGG
66 GAAACAGATCGAAGGCGATGGG
* * * **
120405984 CCTTAAACCTCTAAGCAGTAGGGTAACAGGCTGAATTTATAGATCTTAACCCCCTAAAAAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
*
120406049 GAAACAGATCAAAGGCGATGGG
66 GAAACAGATCGAAGGCGATGGG
* * * * *
120406071 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTCATCACCCTAAGTAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
120406136 GAAACAGATCGAAGGCGATGGG
66 GAAACAGATCGAAGGCGATGGG
120406158 CCTTAAACCCCTAAGCAGTAGGGTAAC-GGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
** *
120406222 GAAACAGATC-AGAGGTAATAGG
66 GAAACAGATCGA-AGGCGATGGG
* * * *
120406244 CCTTAAACCCCTAAGTAGTAAGGTAACAGGCTAGAAATTACAAATCT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA-AATTTACAGATCT
120406291 CTTCTCCTTA
Statistics
Matches: 575, Mismatches: 70, Indels: 23
0.86 0.10 0.03
Matches are distributed among these distances:
85 1 0.00
86 79 0.14
87 368 0.64
88 90 0.16
89 34 0.06
90 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (87 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGG
GAAACAGATCGAAGGCGATGGG
Found at i:120407585 original size:20 final size:19
Alignment explanation
Indices: 120407557--120407614 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
120407547 TAGTGTATAC
* *
120407557 ATTACTTTTACCATTCTTTT
1 ATTATTTTTACCATT-ATTT
**
120407577 ATTATTTTTAATATTATTT
1 ATTATTTTTACCATTATTT
120407596 ATTATTATTTACCATTATT
1 ATTATT-TTTACCATTATT
120407615 GTCATCATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 9 0.29
20 22 0.71
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTATTTTTACCATTATTT
Found at i:120407601 original size:10 final size:10
Alignment explanation
Indices: 120407574--120407633 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
120407564 TTACCATTCT
120407574 TTTATTATT-
1 TTTATTATTA
*
120407583 TTTAATATTA
1 TTTATTATTA
120407593 TTTATTATTA
1 TTTATTATTA
**
120407603 TTTACCATTA
1 TTTATTATTA
*
120407613 TTGTCATCATTA
1 TT-T-ATTATTA
120407625 -TTATTATTA
1 TTTATTATTA
120407634 GTATATTTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 14 0.33
10 20 0.48
11 2 0.05
12 6 0.14
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTATTATTA
Found at i:120407731 original size:23 final size:21
Alignment explanation
Indices: 120407681--120407727 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
120407671 ATTAATATTT
*
120407681 ATATATTTATATATTTTATGC
1 ATATATTTATATATTTTATGA
120407702 ATATATTTATAGTTATTTT-TGA
1 ATATATTTATA--TATTTTATGA
120407724 ATAT
1 ATAT
120407728 TATTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 6 0.26
23 6 0.26
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
ATATATTTATATATTTTATGA
Found at i:120407780 original size:24 final size:24
Alignment explanation
Indices: 120407753--120407809 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
120407743 TAAATATATG
* *
120407753 TATACATATTTAAATACTATATTA
1 TATACATATTTAAATACCACATTA
* * *
120407777 TATACGTATTTTAATACCACGTTA
1 TATACATATTTAAATACCACATTA
120407801 TATACATAT
1 TATACATAT
120407810 ATTTATATCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (24 bp):
TATACATATTTAAATACCACATTA
Found at i:120408002 original size:2 final size:2
Alignment explanation
Indices: 120407995--120408019 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120407985 ATGTATACAT
120407995 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
120408020 TTTAATATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120412428 original size:26 final size:26
Alignment explanation
Indices: 120412399--120412505 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
120412389 TGATACAAAT
120412399 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
120412425 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120412451 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120412476 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120412502 TGAT
1 TGAT
120412506 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 24 0.32
26 51 0.68
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:120412501 original size:51 final size:52
Alignment explanation
Indices: 120412399--120412505 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
120412389 TGATACAAAT
120412399 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
120412451 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
120412502 TGAT
1 TGAT
120412506 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 30 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:120419474 original size:26 final size:26
Alignment explanation
Indices: 120419445--120419552 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
120419435 TGATACAAAT
120419445 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
120419471 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120419497 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120419523 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120419549 TGAT
1 TGAT
120419553 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:120427266 original size:15 final size:15
Alignment explanation
Indices: 120427248--120427277 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120427238 TTTATTATTA
120427248 TTATTATTATATTTT
1 TTATTATTATATTTT
*
120427263 TTATTTTTATATTTT
1 TTATTATTATATTTT
120427278 GATTTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTATTATATTTT
Done.