Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 129486693
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129486693
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 305 characters in sequence are not A, C, G, or T
File 416 of 444
Found at i:120745200 original size:31 final size:31
Alignment explanation
Indices: 120745163--120745231 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
120745153 CTATTTTTTT
*
120745163 ATTTAATTGTGATATATTAACTAATATGGTA
1 ATTTAATTGGGATATATTAACTAATATGGTA
* * *
120745194 ATTTAATTGGGATGTATTAACTATTGTGGTA
1 ATTTAATTGGGATATATTAACTAATATGGTA
120745225 ATTTAAT
1 ATTTAAT
120745232 ATGGTTAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (31 bp):
ATTTAATTGGGATATATTAACTAATATGGTA
Found at i:120747750 original size:46 final size:47
Alignment explanation
Indices: 120747700--120747869 Score: 170
Period size: 47 Copynumber: 3.7 Consensus size: 47
120747690 GACGAGAGCT
* * *
120747700 AGTGTAAGA-TATGTTTGGGACAT-GCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGATGTAAGCC
* ** * *
120747746 AGTGTAGGA-CATGTCTGAAACAT-GCATTGGCTACGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGATGTA-AGCC
* ** *
120747792 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGTAAGCC
120747839 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
120747870 ACACTTTACC
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.03
46 41 0.40
47 51 0.50
48 7 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGTAAGCC
Found at i:120747859 original size:140 final size:141
Alignment explanation
Indices: 120747606--120747869 Score: 318
Period size: 140 Copynumber: 1.9 Consensus size: 141
120747596 TTATTTGGCT
* **
120747606 AGTGTAAGACATGTCTGAAACATGCATCGACTACATTATAAGAGCCAGTGAAAGATTATGTCTGG
1 AGTGTAAGACATGTCTGAAACATGCATCGACTACATGATAAGAGCCAGTGAAAGACCATGTCTGG
* * ** * * *
120747671 GTCATGGCATCGGCATTTTGACGAGAGCTAGTGTAAGATATGTTTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
120747735 AGACGTAAGCC
131 AGACGTAAGCC
* * * * * * *
120747746 AGTGTAGGACATGTCTGAAACATGCATTGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGAAACATGCATCGACTAC-ATGATAAGAGCCAGTGAAAGACCATGTCTG
* *
120747810 GGACATGGCATCGAC-TTAAGATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
65 GGACATGGCATCGACATTAAGACGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG
120747870 ACACTTTACC
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
139 18 0.18
140 77 0.75
141 7 0.07
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGAAACATGCATCGACTACATGATAAGAGCCAGTGAAAGACCATGTCTGG
GACATGGCATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:120748135 original size:37 final size:37
Alignment explanation
Indices: 120748085--120748159 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
120748075 TTTGGTATCA
* *
120748085 TGAGCATGTAGATCATTGATAAAATGTTATTGTTGTG
1 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
120748122 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
1 TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
120748159 T
1 T
120748160 ACTTACTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.40
Consensus pattern (37 bp):
TGAGCATGTAGATCATTGATAAAATGTTACTATTGTG
Found at i:120754721 original size:15 final size:15
Alignment explanation
Indices: 120754683--120754726 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
120754673 CATAGTATCG
* *
120754683 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
120754698 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
120754713 TATCTTGGATTTCT
1 TATCTTGGATTTCT
120754727 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:120756814 original size:46 final size:46
Alignment explanation
Indices: 120756662--120756835 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
120756652 GGTTGAGCAT
* * *
120756662 CCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
* *** * * *
120756707 CCGAACTCGTTGAGCTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAACGC
* *
120756752 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
* *
120756800 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
120756836 GCGGTTACAT
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 17 0.16
46 52 0.50
47 32 0.31
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
Found at i:120756819 original size:93 final size:92
Alignment explanation
Indices: 120756658--120756827 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 92
120756648 GGATGGTTGA
* *
120756658 GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGCT
1 GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGCT
120756723 GAGTCCGAGTTCGAGAGATGTAACTAG
66 GAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
120756750 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGC
*
120756815 TGAGTCTGAGTTC
65 TGAGTCCGAGTTC
120756828 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 19 0.27
93 51 0.73
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGCT
GAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:120758548 original size:3 final size:3
Alignment explanation
Indices: 120758535--120758588 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
120758525 GTCACATTGC
* *
120758535 TAT TGT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
120758583 TAT TAT
1 TAT TAT
120758589 AAATTGCACC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:120771625 original size:47 final size:47
Alignment explanation
Indices: 120771516--120771626 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
120771506 CCGGGATAAG
* *
120771516 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
120771563 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
120771610 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
120771627 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:120776930 original size:42 final size:42
Alignment explanation
Indices: 120776825--120776984 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 42
120776815 TATATGCTTC
* * *
120776825 TGTGTAAGACCATATCTGGGATATGGCATCAGTGAGATATGTG-ATC
1 TGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATGTGAATA
*
120776871 TGTCTAAGACCATAGCTGGGCTATGGCATCGATATGTGAATA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAATA
* *
120776913 TGTGTAAGACCATAGCTGGGCTATGACATC-ATTATGTGAAGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGAATA
* **
120776955 TGTGTAAGACCATAGTTGAACTATGGCATC
1 TGTGTAAGACCATAGCTGGGCTATGGCATC
120776985 AAGAAAACGA
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
41 9 0.09
42 65 0.64
46 27 0.27
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGAATA
Found at i:120777525 original size:2 final size:2
Alignment explanation
Indices: 120777518--120777542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120777508 TGAAATTGTG
120777518 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
120777543 GAGAAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120779864 original size:21 final size:20
Alignment explanation
Indices: 120779840--120779882 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
120779830 TCAAAATGAC
120779840 TTTAATTATATTTTGAGTTTT
1 TTTAATTA-ATTTTGAGTTTT
*
120779861 TTTAATTAATTTTTA-TTTT
1 TTTAATTAATTTTGAGTTTT
120779880 TTT
1 TTT
120779883 TTCAAACTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTAATTAATTTTGAGTTTT
Found at i:120779884 original size:21 final size:21
Alignment explanation
Indices: 120779840--120779883 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
120779830 TCAAAATGAC
120779840 TTTAATTATATTTTGAGTTTT
1 TTTAATTATATTTTGAGTTTT
* *
120779861 TTTAATTA-ATTTTTATTTTT
1 TTTAATTATATTTTGAGTTTT
120779881 TTT
1 TTT
120779884 TCAAACTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTAATTATATTTTGAGTTTT
Found at i:120793501 original size:15 final size:15
Alignment explanation
Indices: 120793481--120793510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120793471 CATTTTATTT
*
120793481 ATATTAGGATAATTA
1 ATATTAAGATAATTA
120793496 ATATTAAGATAATTA
1 ATATTAAGATAATTA
120793511 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:120794356 original size:22 final size:22
Alignment explanation
Indices: 120794326--120794371 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
120794316 TTCAATTCAC
120794326 TTTAAATTCTGT-TTTTATTTTT
1 TTTAAATTCT-TATTTTATTTTT
*
120794348 TTTATATTCTTAATTTTATTTTT
1 TTTAAATTCTT-ATTTTATTTTT
120794371 T
1 T
120794372 ATTTTTCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 9 0.43
23 11 0.52
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTAAATTCTTATTTTATTTTT
Found at i:120795866 original size:7 final size:7
Alignment explanation
Indices: 120795849--120795945 Score: 140
Period size: 7 Copynumber: 13.7 Consensus size: 7
120795839 AACCTCGAGA
120795849 TTTAGGGG
1 TTTA-GGG
120795857 TTTAGGG
1 TTTAGGG
120795864 TTTAGGG
1 TTTAGGG
*
120795871 TTTAGGA
1 TTTAGGG
120795878 TTTAGGG
1 TTTAGGG
120795885 TTTAGGG
1 TTTAGGG
*
120795892 TTTATGG
1 TTTAGGG
*
120795899 TTTAGTG
1 TTTAGGG
120795906 TTTAGGG
1 TTTAGGG
120795913 TTTAGGG
1 TTTAGGG
*
120795920 TTTAGAG
1 TTTAGGG
*
120795927 TTTAAGG
1 TTTAGGG
120795934 TTTAGGG
1 TTTAGGG
120795941 TTTAG
1 TTTAG
120795946 TAGCTAATGT
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
7 75 0.95
8 4 0.05
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:120797023 original size:5 final size:5
Alignment explanation
Indices: 120797009--120797064 Score: 64
Period size: 5 Copynumber: 11.4 Consensus size: 5
120796999 GCAACCCAAT
*
120797009 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTT- TATTTA TTTTA TCTTA --TTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA
120797058 TTTTA TT
1 TTTTA TT
120797065 ATTTATTATT
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
3 3 0.07
4 1 0.02
5 35 0.78
6 6 0.13
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:120797069 original size:20 final size:20
Alignment explanation
Indices: 120797017--120797070 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
120797007 ATTTTTATTT
*
120797017 TTATTTTA-T-TTTATTTTA
1 TTATTTTATTATTTATCTTA
120797035 -T-TTTTATTTATTTTATCTTA
1 TTATTTTA-TTA-TTTATCTTA
120797055 TTATTTTATTATTTAT
1 TTATTTTATTATTTAT
120797071 TATTTTCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
16 5 0.17
17 1 0.03
18 1 0.03
20 13 0.45
21 4 0.14
22 5 0.17
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (20 bp):
TTATTTTATTATTTATCTTA
Found at i:120797072 original size:15 final size:14
Alignment explanation
Indices: 120797007--120797076 Score: 74
Period size: 15 Copynumber: 5.0 Consensus size: 14
120796997 AGGCAACCCA
120797007 ATTTTTA-T-TTTT
1 ATTTTTATTATTTT
*
120797019 ATTTTATTTTATTTT
1 ATTTT-TATTATTTT
120797034 ATTTTTATTTATTTT
1 ATTTTTA-TTATTTT
*
120797049 A-TCTTATTATTTT
1 ATTTTTATTATTTT
120797062 ATTATTTATTATTTT
1 ATT-TTTATTATTTT
120797077 CAGATATTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
12 5 0.10
13 9 0.19
14 7 0.15
15 27 0.56
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.77
Consensus pattern (14 bp):
ATTTTTATTATTTT
Found at i:120797085 original size:28 final size:28
Alignment explanation
Indices: 120797007--120797076 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
120796997 AGGCAACCCA
120797007 ATTTTTATTTTTATTTTAT--T-TTATTTT
1 ATTTTTA--TTTATTTTATCATATTATTTT
*
120797034 ATTTTTATTTATTTTATCTTATTATTTT
1 ATTTTTATTTATTTTATCATATTATTTT
120797062 ATTATTTA-TTATTTT
1 ATT-TTTATTTATTTT
120797077 CAGATATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
25 10 0.26
27 8 0.21
28 17 0.44
29 4 0.10
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.77
Consensus pattern (28 bp):
ATTTTTATTTATTTTATCATATTATTTT
Found at i:120801285 original size:26 final size:26
Alignment explanation
Indices: 120801255--120801362 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
120801245 TGAAATTCCC
*
120801255 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
120801281 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
120801307 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
* *
120801333 ATCATGAAACATTTACTTAACTCATT
1 ATCATGAAACATTTACCTAACCCATT
120801359 ATCA
1 ATCA
120801363 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:120802670 original size:12 final size:12
Alignment explanation
Indices: 120802653--120802685 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
120802643 CTACTTCCCA
120802653 TTTACTATTATT
1 TTTACTATTATT
120802665 TTTACTATTATT
1 TTTACTATTATT
*
120802677 TTAACTATT
1 TTTACTATT
120802686 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:120804312 original size:59 final size:60
Alignment explanation
Indices: 120804220--120804335 Score: 189
Period size: 59 Copynumber: 1.9 Consensus size: 60
120804210 CTAATTCTTC
*
120804220 GTATAGAAATGCACTCTTTCCATCAAATTTCCATAGTTTCCAACC-TTCAAAGTAGCTTT
1 GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGCTTT
* * *
120804279 GTATAGAAATATATTCTTTCCATCAAGTTTCCATAGTTTCCAACCTTTCAAAGTAGC
1 GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGC
120804336 AAGCGAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 41 0.79
60 11 0.21
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (60 bp):
GTATAGAAATACACTCTTTCCATCAAATTTCCATAGTTTCCAACCTTTCAAAGTAGCTTT
Found at i:120805792 original size:31 final size:30
Alignment explanation
Indices: 120805735--120805793 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
120805725 AGAAATACTC
* * * *
120805735 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTAAAGTGAAAATATGA
120805765 AAAAGTTGAAGGACTAACAGTGAAAATAT
1 AAAAGTTGAAGGACTAA-AGTGAAAATAT
120805794 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.25
Consensus pattern (30 bp):
AAAAGTTGAAGGACTAAAGTGAAAATATGA
Found at i:120811381 original size:19 final size:19
Alignment explanation
Indices: 120811353--120811403 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
120811343 TACAATAAAA
*
120811353 TTTATTTTTTTCTACAAAT
1 TTTATATTTTTCTACAAAT
**
120811372 TTTATATTTTGT-TACATTT
1 TTTATATTTT-TCTACAAAT
*
120811391 TTTATAATTTTCT
1 TTTATATTTTTCT
120811404 TATGAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.04
19 24 0.92
20 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATATTTTTCTACAAAT
Found at i:120811406 original size:11 final size:10
Alignment explanation
Indices: 120811387--120811542 Score: 60
Period size: 10 Copynumber: 15.8 Consensus size: 10
120811377 ATTTTGTTAC
120811387 ATTTTTTATA
1 ATTTTTTATA
120811397 ATTTTCTTATGA
1 ATTTT-TTAT-A
**
120811409 AAATTTTATA
1 ATTTTTTATA
*
120811419 ATTTTCTTATG
1 ATTTT-TTATA
*
120811430 A--CTTTATA
1 ATTTTTTATA
*
120811438 AATTTTTATA
1 ATTTTTTATA
*
120811448 ATTATTTTCTA
1 ATT-TTTTATA
* *
120811459 ATCTTTAAT-
1 ATTTTTTATA
120811468 ATTTTTT-TA
1 ATTTTTTATA
120811477 CATTTTTTATTA
1 -ATTTTTTA-TA
** *
120811489 AAATTTAATA
1 ATTTTTTATA
120811499 A-TTTTTATA
1 ATTTTTTATA
* *
120811508 A-ATTTTATTG
1 ATTTTTTA-TA
120811518 A-TTTTTAT-
1 ATTTTTTATA
*
120811526 -TTTTTTATC
1 ATTTTTTATA
120811535 ATTTTTTA
1 ATTTTTTA
120811543 CAACATGTCA
Statistics
Matches: 109, Mismatches: 23, Indels: 28
0.68 0.14 0.17
Matches are distributed among these distances:
8 13 0.12
9 19 0.17
10 45 0.41
11 26 0.24
12 6 0.06
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:120811474 original size:30 final size:30
Alignment explanation
Indices: 120811438--120811513 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 30
120811428 TGACTTTATA
**
120811438 AATTTTTATAATTATTTT-CTAATCTTTAAT
1 AATTTTTATAATT-TTTTACTAAAATTTAAT
* *
120811468 -ATTTTTTTACATTTTTTATTAAAATTTAAT
1 AATTTTTATA-ATTTTTTACTAAAATTTAAT
*
120811498 AATTTTTATAAATTTT
1 AATTTTTATAATTTTT
120811514 ATTGATTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 12 0.32
30 17 0.46
31 8 0.22
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (30 bp):
AATTTTTATAATTTTTTACTAAAATTTAAT
Found at i:120811509 original size:19 final size:19
Alignment explanation
Indices: 120811480--120811525 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
120811470 TTTTTTACAT
120811480 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAAAATTTAATAA
* * *
120811500 TTTTTATAAATTTTATTGA
1 TTTTTATAAAATTTAATAA
120811519 TTTTTAT
1 TTTTTAT
120811526 TTTTTTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATAAAATTTAATAA
Found at i:120811759 original size:91 final size:89
Alignment explanation
Indices: 120811622--120811844 Score: 258
Period size: 85 Copynumber: 2.5 Consensus size: 89
120811612 ATCAAATGGC
* ** * * *
120811622 CTTTTTAATGTATTTTGGCAGTTCAAGTACCCAATCGAGTGTAAAAAAAAAAATAGGGGCTTAAA
1 CTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTG-AAAAAAAAAAACAGGAGCTTAAA
120811687 TGCTT-TTATTGAAAAAGTTTGAAGGT
65 TGCTTATT-TTG-AAAAGTTTGAAGGT
* * *
120811713 CTTTTTGATGTATTTTGAAAATTCAAGTACCCAATTGAGTG----CAAAAAACAGGAGCTTAATT
1 CTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAAAACAGGAGCTTAAAT
*
120811774 GCTTATTTTGAAAAGTTTGAGGGT
66 GCTTATTTTGAAAAGTTTGAAGGT
* * * *
120811798 CTTTTTGATGCATTTTGAAAGTTTAAGTACCAAATTAAGTGAAAAAA
1 CTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAA
120811845 GTAAGGGCTT
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
85 49 0.44
86 23 0.21
87 2 0.02
89 1 0.01
91 36 0.32
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (89 bp):
CTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAAAACAGGAGCTTAAAT
GCTTATTTTGAAAAGTTTGAAGGT
Found at i:120815135 original size:20 final size:22
Alignment explanation
Indices: 120815102--120815156 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
120815092 TTAAAATAAA
**
120815102 ATTAAAATTTTAAA-TA-ATTT
1 ATTAAAATAATAAATTACATTT
120815122 ATTAAAATAATAAATTACATTT
1 ATTAAAATAATAAATTACATTT
* *
120815144 ATTATATTAATAA
1 ATTAAAATAATAA
120815157 TTTATTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 12 0.41
21 2 0.07
22 15 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTAAAATAATAAATTACATTT
Found at i:120815146 original size:22 final size:20
Alignment explanation
Indices: 120815102--120815147 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
120815092 TTAAAATAAA
**
120815102 ATTAAAATTTTAAATAATTT
1 ATTAAAATAATAAATAATTT
120815122 ATTAAAATAATAAATTACATTT
1 ATTAAAATAATAAA-TA-ATTT
120815144 ATTA
1 ATTA
120815148 TATTAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAAAATAATAAATAATTT
Found at i:120815258 original size:28 final size:27
Alignment explanation
Indices: 120815206--120815259 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
120815196 TTTAATAATA
* *
120815206 TTAAAAAAATATAATATTTTAAATATT
1 TTAAAAAAATAAAATATTATAAATATT
*
120815233 TTAAAAAAATAAAATTATTATCAATAT
1 TTAAAAAAATAAAA-TATTATAAATAT
120815260 AATAATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (27 bp):
TTAAAAAAATAAAATATTATAAATATT
Found at i:120817219 original size:22 final size:22
Alignment explanation
Indices: 120817166--120817221 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
120817156 TGTTGCACAT
* * *
120817166 AATTTTATACATTTTTTTTATT
1 AATTATATATATTTTTTTTATA
*
120817188 TATTA-A-ATATTTTTTTTATA
1 AATTATATATATTTTTTTTATA
120817208 AATTATATATATTT
1 AATTATATATATTT
120817222 GTACAAATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 16 0.59
21 2 0.07
22 9 0.33
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
AATTATATATATTTTTTTTATA
Found at i:120817311 original size:31 final size:30
Alignment explanation
Indices: 120817268--120817327 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
120817258 AAAGGTCAGT
*
120817268 TAATTTTGAAAAATAATTAAGAA-AATAAAA
1 TAATATTGAAAAATAATTAA-AATAATAAAA
120817298 TAATATTGTAAAAATAATTAAAATAATAAA
1 TAATATTG-AAAAATAATTAAAATAATAAA
120817328 TAAAAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (30 bp):
TAATATTGAAAAATAATTAAAATAATAAAA
Found at i:120817338 original size:21 final size:22
Alignment explanation
Indices: 120817306--120817351 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
120817296 AATAATATTG
120817306 TAAAAATAATTAAAATAATAAA
1 TAAAAATAATTAAAATAATAAA
*
120817328 TAAAAAT-ATTAAAATAATATA
1 TAAAAATAATTAAAATAATAAA
120817349 TAA
1 TAA
120817352 TTTTGGAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAAATAATTAAAATAATAAA
Found at i:120817341 original size:31 final size:31
Alignment explanation
Indices: 120817276--120817337 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 31
120817266 GTTAATTTTG
*
120817276 AAAAATAATTAAGAAAATAAAATAATATTGT
1 AAAAATAATTAAGAAAATAAAAAAATATTGT
120817307 AAAAATAATTAA-AATAATAAATAAAAATATT
1 AAAAATAATTAAGAA-AAT-AA-AAAAATATT
120817338 AAAATAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 15 0.56
32 2 0.07
33 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (31 bp):
AAAAATAATTAAGAAAATAAAAAAATATTGT
Found at i:120817477 original size:44 final size:44
Alignment explanation
Indices: 120817427--120817526 Score: 173
Period size: 44 Copynumber: 2.3 Consensus size: 44
120817417 TCATACAACC
*
120817427 CATTTAATAATATTGAAAAGATATTTACACTAAATTAATTATCT
1 CATTTAATAATATTGAAAAGATATTTACACTAAACTAATTATCT
* *
120817471 CATTTAATAATTTTGAAAAGATATTTACGCTAAACTAATTATCT
1 CATTTAATAATATTGAAAAGATATTTACACTAAACTAATTATCT
120817515 CATTTAATAATA
1 CATTTAATAATA
120817527 ACAATTAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (44 bp):
CATTTAATAATATTGAAAAGATATTTACACTAAACTAATTATCT
Found at i:120818045 original size:3 final size:3
Alignment explanation
Indices: 120818037--120818108 Score: 69
Period size: 3 Copynumber: 24.7 Consensus size: 3
120818027 ACAACTTTTT
* * *
120818037 TAC TAC TAC TAT TA- TAC TAC TAC TA- AAC TAC TAC TAC TAC TAT TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
* *
120818083 CAC TA- TCAC TAC CAC TAC TAC TAC TA
1 TAC TAC T-AC TAC TAC TAC TAC TAC TA
120818109 TTGGTAAGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
2 4 0.07
3 51 0.91
4 1 0.02
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (3 bp):
TAC
Found at i:120822656 original size:32 final size:32
Alignment explanation
Indices: 120822615--120822676 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
120822605 TTTTTTTTTG
* * *
120822615 AAACTCGTACTTTGATGCCGGCCATTGACATA
1 AAACTCGTACTCTGATGCCGACAATTGACATA
*
120822647 AAACTCGTACTCTGGTGCCGACAATTGACA
1 AAACTCGTACTCTGATGCCGACAATTGACA
120822677 GGTCAGCACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (32 bp):
AAACTCGTACTCTGATGCCGACAATTGACATA
Found at i:120823271 original size:30 final size:32
Alignment explanation
Indices: 120823208--120823277 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
120823198 TATTTGACAA
*
120823208 TTTAAATATAAATTATTGTATTTATATTTTAT
1 TTTAAATATAAATTATTGTATTTATATTATAT
*
120823240 TTTATATATAAA-TA-TGTA-TT-TATTATAT
1 TTTAAATATAAATTATTGTATTTATATTATAT
120823268 ATTTAAATAT
1 -TTTAAATAT
120823278 TTTATTCGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 7 0.21
29 10 0.29
30 4 0.12
31 2 0.06
32 11 0.32
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (32 bp):
TTTAAATATAAATTATTGTATTTATATTATAT
Found at i:120823667 original size:19 final size:19
Alignment explanation
Indices: 120823643--120823696 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
120823633 AATGTTCTAT
120823643 CTTCACGTCTCTGCTGCTG
1 CTTCACGTCTCTGCTGCTG
* *
120823662 CTTCACATCTCTACTGCTG
1 CTTCACGTCTCTGCTGCTG
* *
120823681 TTTCACGTCCCTGCTG
1 CTTCACGTCTCTGCTG
120823697 TTATATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.09, C:0.37, G:0.17, T:0.37
Consensus pattern (19 bp):
CTTCACGTCTCTGCTGCTG
Found at i:120828159 original size:19 final size:19
Alignment explanation
Indices: 120828131--120828196 Score: 105
Period size: 19 Copynumber: 3.5 Consensus size: 19
120828121 TAACAGTAGG
*
120828131 GACGTAAAGCAGCAGCAGA
1 GACGTGAAGCAGCAGCAGA
*
120828150 GACGTGAAGCAGCAGCAAA
1 GACGTGAAGCAGCAGCAGA
*
120828169 GATGTGAAGCAGCAGCAGA
1 GACGTGAAGCAGCAGCAGA
120828188 GACGTGAAG
1 GACGTGAAG
120828197 ATAGAACATT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.39, C:0.18, G:0.35, T:0.08
Consensus pattern (19 bp):
GACGTGAAGCAGCAGCAGA
Found at i:120831180 original size:19 final size:19
Alignment explanation
Indices: 120831138--120831183 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
120831128 ATAATATTAA
120831138 TTAA-TAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
120831156 TT-ATTAAAATATTTTTAC
1 TTAATTAAAATATTTTTAC
120831174 TTAATTAAAA
1 TTAATTAAAA
120831184 ATCATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.04
18 18 0.69
19 7 0.27
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATTAAAATATTTTTAC
Found at i:120831483 original size:2 final size:2
Alignment explanation
Indices: 120831476--120831544 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
120831466 AAATATTCTT
120831476 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
120831518 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
120831545 TTTAAAAAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:120835618 original size:26 final size:26
Alignment explanation
Indices: 120835589--120835641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
120835579 ACAATGAAGT
*
120835589 ATAAACATTAACTTAATCTAACAATC
1 ATAAACATTAACTTAACCTAACAATC
120835615 ATAAACATTAACTTAACCTAACAATC
1 ATAAACATTAACTTAACCTAACAATC
120835641 A
1 A
120835642 ATTCAGCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (26 bp):
ATAAACATTAACTTAACCTAACAATC
Found at i:120838110 original size:12 final size:12
Alignment explanation
Indices: 120838093--120838117 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
120838083 TACTTTTATT
120838093 TTTTTAATTTTA
1 TTTTTAATTTTA
120838105 TTTTTAATTTTA
1 TTTTTAATTTTA
120838117 T
1 T
120838118 ATTATGAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTAATTTTA
Found at i:120838518 original size:15 final size:15
Alignment explanation
Indices: 120838488--120838516 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
120838478 ACTATTAGTA
120838488 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
120838503 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
120838517 TACCATACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:120840323 original size:29 final size:29
Alignment explanation
Indices: 120840280--120840335 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
120840270 TGAGAACTTA
120840280 ATGTCTTTGAACCAAATCCAAACCAATTG
1 ATGTCTTTGAACCAAATCCAAACCAATTG
*
120840309 ATGTCTTTGATCCAAATCCAAACCAAT
1 ATGTCTTTGAACCAAATCCAAACCAAT
120840336 CTCTAGGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (29 bp):
ATGTCTTTGAACCAAATCCAAACCAATTG
Found at i:120846104 original size:16 final size:16
Alignment explanation
Indices: 120846083--120846126 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
120846073 TATGAAATTT
120846083 TAATATTTTATTAAAA
1 TAATATTTTATTAAAA
*
120846099 TAATATTTTAATTAAGA
1 TAATATTTT-ATTAAAA
*
120846116 TCAT-TTTTATT
1 TAATATTTTATT
120846127 TAATAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 13 0.52
17 9 0.36
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATATTTTATTAAAA
Found at i:120850165 original size:3 final size:3
Alignment explanation
Indices: 120850092--120850147 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
120850082 GTTGTTGTTG
120850092 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120850140 TTA TTA TT
1 TTA TTA TT
120850148 TAATAGGTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:120850590 original size:11 final size:12
Alignment explanation
Indices: 120850560--120850593 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
120850550 GTATATTTAC
120850560 TTATTATATAAG
1 TTATTATATAAG
120850572 TATATTAT-TAAG
1 T-TATTATATAAG
120850584 TTATTATATA
1 TTATTATATA
120850594 TACATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:120851397 original size:41 final size:39
Alignment explanation
Indices: 120851351--120851457 Score: 99
Period size: 41 Copynumber: 2.7 Consensus size: 39
120851341 TCGACCTCGA
*
120851351 GTCGATGAGACACTGGGTGTCACTATATTTCTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACTAT-TTACTTCGGATAG
* ** ** * *
120851391 ATTCGATGAGGTACTGGGTACCAC-CTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACTATTTACTTCGGATAG
*
120851430 GCCGATGAGACACTGGGTGTCAACTATT
1 GTCGATGAGACACTGGGTGTC-ACTATT
120851458 GCTTCGAATT
Statistics
Matches: 49, Mismatches: 15, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
38 15 0.31
39 13 0.27
40 3 0.06
41 18 0.37
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCACTATTTACTTCGGATAG
Found at i:120851463 original size:39 final size:40
Alignment explanation
Indices: 120851353--120851463 Score: 93
Period size: 38 Copynumber: 2.8 Consensus size: 40
120851343 GACCTCGAGT
* **
120851353 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** * *
120851394 CGATGAGGTACTGGGTACCACCT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
*
120851432 CGATGAGACACTGGGTGTCAACTATTGCTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
120851464 AATTATCCGA
Statistics
Matches: 53, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
38 18 0.34
39 18 0.34
40 1 0.02
41 15 0.28
42 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:120854313 original size:96 final size:96
Alignment explanation
Indices: 120854149--120854340 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 96
120854139 TTTAATTCCA
*
120854149 AGCATTTTTACAATTAGGTCCTAAAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTCAT
1 AGCATTTTCACAATTAGGTCCTAAAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTCAT
120854214 AAACAAATTAAAGCTTTAATTTCATTCTATT
66 AAACAAATTAAAGCTTTAATTTCATTCTATT
120854245 AGCATTTTCACAATTAGGTCCTAAAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTCAT
1 AGCATTTTCACAATTAGGTCCTAAAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTCAT
120854310 AAACAAATTAAAGCTTTAATTTCATTCTATT
66 AAACAAATTAAAGCTTTAATTTCATTCTATT
120854341 TCATCATAAA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (96 bp):
AGCATTTTCACAATTAGGTCCTAAAAATCAATTTCTATTGAAATTACCTAATAAAATCATCTCAT
AAACAAATTAAAGCTTTAATTTCATTCTATT
Found at i:120864042 original size:13 final size:13
Alignment explanation
Indices: 120864024--120864105 Score: 74
Period size: 13 Copynumber: 6.9 Consensus size: 13
120864014 TCTTCACTCC
120864024 AACCACTCCACTA
1 AACCACTCCACTA
120864037 AACCAC-CCTACTA
1 AACCACTCC-ACTA
120864050 AACCAC-CC-C--
1 AACCACTCCACTA
*
120864059 AACCACCCCACTA
1 AACCACTCCACTA
*
120864072 AACCACCCCACTA
1 AACCACTCCACTA
120864085 AACCA-TCC-C--
1 AACCACTCCACTA
120864094 AACCACTCCACT
1 AACCACTCCACT
120864106 TGCCTACAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 17
0.77 0.01 0.22
Matches are distributed among these distances:
9 11 0.18
10 5 0.08
11 4 0.07
12 4 0.07
13 36 0.60
ACGTcount: A:0.37, C:0.52, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACTCCACTA
Found at i:120864062 original size:22 final size:22
Alignment explanation
Indices: 120864037--120864081 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
120864027 CACTCCACTA
*
120864037 AACCACCCTACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
120864059 AACCACCCCACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
120864081 A
1 A
120864082 CTAAACCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.56, G:0.00, T:0.07
Consensus pattern (22 bp):
AACCACCCCACTAAACCACCCC
Found at i:120864070 original size:35 final size:35
Alignment explanation
Indices: 120864022--120864105 Score: 141
Period size: 35 Copynumber: 2.4 Consensus size: 35
120864012 TATCTTCACT
*
120864022 CCAACCACTCCACTAAACCACCCTACTAAACCACC
1 CCAACCACTCCACTAAACCACCCCACTAAACCACC
* *
120864057 CCAACCACCCCACTAAACCACCCCACTAAACCATC
1 CCAACCACTCCACTAAACCACCCCACTAAACCACC
120864092 CCAACCACTCCACT
1 CCAACCACTCCACT
120864106 TGCCTACAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.36, C:0.54, G:0.00, T:0.11
Consensus pattern (35 bp):
CCAACCACTCCACTAAACCACCCCACTAAACCACC
Found at i:120864505 original size:19 final size:18
Alignment explanation
Indices: 120864468--120864509 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
120864458 GGAGAGAGTG
*
120864468 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
120864486 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
120864505 TTATT
1 TTATT
120864510 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:120864568 original size:33 final size:39
Alignment explanation
Indices: 120864494--120864575 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
120864484 TATTATTTTC
*
120864494 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
120864533 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
120864566 TATTACTATT
1 TATTACTATT
120864576 GTGTTTTACT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:120866766 original size:44 final size:45
Alignment explanation
Indices: 120866713--120866815 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
120866703 TGTCTTTAAC
** * *
120866713 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAACCAATCCTGTCTCCAAAGCCATATTATAAT
** *
120866757 ATGGACTTACATGGCCCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAACCAATCCTGTCTCCAAAGCCATA-TTATAAT
120866803 ATGGACTTACATG
1 ATGGACTTACATG
120866816 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (45 bp):
ATGGACTTACATGAACCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:120866817 original size:46 final size:44
Alignment explanation
Indices: 120866732--120866817 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
120866722 CATGAATTAT
*
120866732 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCCCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCCCAA
*
120866776 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGC
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGC
120866818 TCATTTCTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 18 0.47
46 20 0.53
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCCCAA
Found at i:120883060 original size:206 final size:206
Alignment explanation
Indices: 120882700--120883985 Score: 2257
Period size: 206 Copynumber: 6.2 Consensus size: 206
120882690 TGGCTAAAGT
* *
120882700 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
120882765 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
** * * *
120882830 TCGAAGTCTGGCATCTTTATTTCGACGGAGAGTAGATACATAGCATATCCGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
120882895 ATACTGAAGCA
196 ATACTGAAGCA
* *
120882906 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAAACATAGCTGATTTAGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
*
120882971 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
120883036 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
120883101 ATACTGAAGCA
196 ATACTGAAGCA
* *
120883112 ATATCCAAGATGATTTGGCATCATTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
120883177 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
* * *
120883242 TCGAAGTCTAGCATCTCTATTTCGACGGAGAGCAGATACATAGCAAATCTGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
120883307 ATACTGAAGCA
196 ATACTGAAGCA
* * *
120883318 AGATCCAAGATAATTTGGCATCCTTATGCTTACAAGGAGCAAATCGAAGATATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
*
120883383 TTTTGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
* *
120883448 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGTAGATATATAGCAGATCTGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
*
120883513 ATACCGAAGCA
196 ATACTGAAGCA
* *
120883524 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGAAGCAAATCGAAGACATAGCTAATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
*
120883589 TTTCGTGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
* * *
120883654 TCGAAGTCTAGCATCTCCATTTAGACGGAGAGCAGATACATAGCAAATCTGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
120883719 ATACTGAAGCA
196 ATACTGAAGCA
* * * *
120883730 AGATCCAAGATAATTTGGCATCGTTATGCTTACAAGGAGCAAATCGAAGATATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
120883795 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
66 TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
120883860 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
131 TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
*
120883925 ATACCGAAGCA
196 ATACTGAAGCA
* *
120883936 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGA
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGA
120883986 AGCAGATTTG
Statistics
Matches: 1021, Mismatches: 59, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
206 1021 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (206 bp):
AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
TTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAG
TCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTT
ATACTGAAGCA
Found at i:120884382 original size:15 final size:15
Alignment explanation
Indices: 120884355--120884400 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
120884345 TTTTGCCCGG
120884355 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
120884371 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
120884386 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
120884401 ACCTCTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:120884492 original size:13 final size:13
Alignment explanation
Indices: 120884474--120884544 Score: 87
Period size: 13 Copynumber: 5.8 Consensus size: 13
120884464 TCTTCACTCC
120884474 AACCACCCCACTA
1 AACCACCCCACTA
*
120884487 AACCACTCCACTA
1 AACCACCCCACTA
*
120884500 AACCA-CTC-C--
1 AACCACCCCACTA
120884509 AACCACCCCACTA
1 AACCACCCCACTA
120884522 AACCACCCCACTA
1 AACCACCCCACTA
*
120884535 AACCATCCCA
1 AACCACCCCA
120884545 ACCACTCCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 2 0.04
12 1 0.02
13 39 0.80
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.10
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:120884514 original size:35 final size:35
Alignment explanation
Indices: 120884468--120884555 Score: 142
Period size: 35 Copynumber: 2.5 Consensus size: 35
120884458 CAAATATCTT
*
120884468 CACTCCAACCACCCCACTAAACCACTCCACTAAAC
1 CACTCCAACCACCCCACTAAACCACCCCACTAAAC
120884503 CACTCCAACCACCCCACTAAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAACCACCCCACTAAAC
*
120884538 CA-TCCCAACCACTCCACT
1 CACT-CCAACCACCCCACT
120884556 TGCCTACAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
34 1 0.02
35 49 0.98
ACGTcount: A:0.35, C:0.53, G:0.00, T:0.11
Consensus pattern (35 bp):
CACTCCAACCACCCCACTAAACCACCCCACTAAAC
Found at i:120884957 original size:19 final size:18
Alignment explanation
Indices: 120884920--120884961 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
120884910 GGAGAGAGTG
*
120884920 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
120884938 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
120884957 TTATT
1 TTATT
120884962 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:120889392 original size:22 final size:21
Alignment explanation
Indices: 120889345--120889397 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
120889335 GCTATGAATT
*
120889345 TTATTTATATATTTTTTATTAA
1 TTATTT-TAAATTTTTTATTAA
120889367 -TATTTTAAATTTTTTATTTAA
1 TTATTTTAAATTTTTTA-TTAA
*
120889388 TTATTGTAAA
1 TTATTTTAAA
120889398 ACCAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 10 0.37
21 9 0.33
22 8 0.30
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTATTTTAAATTTTTTATTAA
Found at i:120894813 original size:20 final size:20
Alignment explanation
Indices: 120894776--120894925 Score: 135
Period size: 20 Copynumber: 7.2 Consensus size: 20
120894766 AACCCAACAA
*
120894776 AATTTTTAAAATAATTAAAAT
1 AATTTTTAAAA-ATTTAAAAT
120894797 AATTTTTAAAAATTTAAAAT
1 AATTTTTAAAAATTTAAAAT
120894817 AATTTTTAAAAATTTAAAAT
1 AATTTTTAAAAATTTAAAAT
*
120894837 -ATTTATAAAAATTCTAAAATTT
1 AATTTTTAAAAATT-TAAAA--T
* *
120894859 ATATTTTTAAAAAATTATAA-
1 A-ATTTTTAAAAATTTAAAAT
*
120894879 AATTTCTAAAAATTTTCTAAAA-
1 AATTTTTAAAAA--TT-TAAAAT
*
120894901 AATATTTAAAAAATTTTAAAAT
1 AAT-TTTTAAAAA-TTTAAAAT
120894923 AAT
1 AAT
120894926 ACTTTTGGAA
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
19 22 0.20
20 34 0.31
21 17 0.16
22 14 0.13
23 11 0.10
24 11 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AATTTTTAAAAATTTAAAAT
Found at i:120894858 original size:18 final size:18
Alignment explanation
Indices: 120894774--120894893 Score: 75
Period size: 19 Copynumber: 6.4 Consensus size: 18
120894764 TGAACCCAAC
* *
120894774 AAAATTTTTAAAATAATTAA
1 AAAATTTAT-AAA-AATTTA
*
120894794 AATAATTTTTAAAAATTTAA
1 AA-AATTTATAAAAATTT-A
*
120894814 AATAATTTTTAAAAATTTA
1 AA-AATTTATAAAAATTTA
120894833 AAATATTTATAAAAATTCT-
1 AAA-ATTTATAAAAATT-TA
**
120894852 AAAATTTAT--ATTTTTA
1 AAAATTTATAAAAATTTA
* *
120894868 AAAAATTATAAAATTTCTA
1 AAAATTTATAAAAATT-TA
120894887 AAAATTT
1 AAAATTT
120894894 TCTAAAAAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.01
16 11 0.13
18 11 0.13
19 30 0.35
20 25 0.29
21 7 0.08
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTTATAAAAATTTA
Found at i:120894869 original size:24 final size:25
Alignment explanation
Indices: 120894835--120894883 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
120894825 AAAATTTAAA
*
120894835 ATATTTAT-AAAAATTCTAAAATTT
1 ATATTTATAAAAAATTATAAAATTT
*
120894859 ATATTTTTAAAAAATTATAAAATTT
1 ATATTTATAAAAAATTATAAAATTT
120894884 CTAAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATATTTATAAAAAATTATAAAATTT
Found at i:120894910 original size:22 final size:22
Alignment explanation
Indices: 120894877--120894926 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
120894867 AAAAAATTAT
*
120894877 AAAAT-TTCTAAAAATTTTCTAA
1 AAAATATTCTAAAAAATTT-TAA
120894899 AAAATATT-TAAAAAATTTTAA
1 AAAATATTCTAAAAAATTTTAA
120894920 AATAATA
1 AA-AATA
120894927 CTTTTGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 5 0.20
22 18 0.72
23 2 0.08
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATATTCTAAAAAATTTTAA
Found at i:120898560 original size:46 final size:46
Alignment explanation
Indices: 120898508--120898997 Score: 635
Period size: 46 Copynumber: 10.7 Consensus size: 46
120898498 TGATGCTATA
* ** * *
120898508 GTATCTTTCAACTATGGTCTTACTTATTTTC-TGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATG
*** * * **
120898554 GTATCTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
* ** ***
120898600 GTATCTTTCAACTATGGTCTTATTCA-TTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
*** **
120898645 GTATCTTTCAACCATGGTCTTATTTATTTC-CGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
* ** * * *
120898690 GTATCTTTAAACCATGGTCTTATTCTTTTCATGTCATATTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
*
120898736 GTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
120898782 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
* *
120898828 GTGTCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
120898874 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
* *
120898920 GTGTCTTTCAACCATGGTATTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
*
120898966 GTATCTTTCAACCATGGCCTTACACATTTCAT
1 GTATCTTTCAACCATGGTCTTACACATTTCAT
120898998 TTCAGAAAGC
Statistics
Matches: 403, Mismatches: 38, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
45 84 0.21
46 319 0.79
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATG
Found at i:120905988 original size:14 final size:14
Alignment explanation
Indices: 120905969--120905998 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
120905959 TTATTTTCTT
120905969 TTTTATTCATTCAA
1 TTTTATTCATTCAA
*
120905983 TTTTATTCTTTCAA
1 TTTTATTCATTCAA
120905997 TT
1 TT
120905999 CTCTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTATTCATTCAA
Found at i:120909904 original size:9 final size:9
Alignment explanation
Indices: 120909890--120909924 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
120909880 CAAAATTATT
120909890 ATTTTAAAA
1 ATTTTAAAA
120909899 ATTTTAAAA
1 ATTTTAAAA
120909908 ATTTTAAAA
1 ATTTTAAAA
120909917 ATTTTAAA
1 ATTTTAAA
120909925 TTTTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:120909991 original size:20 final size:19
Alignment explanation
Indices: 120909968--120910019 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
120909958 TTTTAAAAAA
120909968 TATATAATTTTTGAAATTTT
1 TATATAATTTTTG-AATTTT
120909988 TATA-AATATTTTGAATTTT
1 TATATAAT-TTTTGAATTTT
* *
120910007 TTTTTAATTTTTG
1 TATATAATTTTTG
120910020 TTGTGAGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (19 bp):
TATATAATTTTTGAATTTT
Found at i:120911779 original size:3 final size:3
Alignment explanation
Indices: 120911771--120911805 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
120911761 AAATGTTACT
120911771 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
120911806 TACGGATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:120911964 original size:55 final size:55
Alignment explanation
Indices: 120911894--120912003 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
120911884 TATATAATAT
120911894 ATGTGAAGAGAAAATTAGGTTTATATCAACAACTTATATAATATATGTGATATAA
1 ATGTGAAGAGAAAATTAGGTTTATATCAACAACTTATATAATATATGTGATATAA
120911949 ATGTGAAGAGAAAATTAGGTTTATATCAACAACTTATATAATATATGTGATATAA
1 ATGTGAAGAGAAAATTAGGTTTATATCAACAACTTATATAATATATGTGATATAA
120912004 TTAGATAACA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (55 bp):
ATGTGAAGAGAAAATTAGGTTTATATCAACAACTTATATAATATATGTGATATAA
Found at i:120916736 original size:20 final size:21
Alignment explanation
Indices: 120916691--120916741 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
120916681 ATAGAAGTTG
*
120916691 TTTAACTTAAAATTATTAATT
1 TTTATCTTAAAATTATTAATT
*
120916712 TTTATTTTAAAATTCA-TAA-T
1 TTTATCTTAAAATT-ATTAATT
120916732 TTTATCTTAA
1 TTTATCTTAA
120916742 TTCATATTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 10 0.38
21 15 0.58
22 1 0.04
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTATCTTAAAATTATTAATT
Found at i:120917859 original size:76 final size:77
Alignment explanation
Indices: 120917707--120917862 Score: 296
Period size: 76 Copynumber: 2.0 Consensus size: 77
120917697 CCCAAGTGAA
120917707 TGTTGAATACAAATATATATCCAATACGGAAATACTTTTTTTTCTTGGCTTAGAAGAAATGAAAA
1 TGTTGAATACAAATATATATCCAATACGGAAATACTTTTTTTTCTTGGCTTAGAAGAAATGAAAA
120917772 TCACATTTATGT
66 TCACATTTATGT
*
120917784 TGTTGAATACAAATATGTATCCAATACGGAAATAC-TTTTTTTCTTGGCTTAGAAGAAATGAAAA
1 TGTTGAATACAAATATATATCCAATACGGAAATACTTTTTTTTCTTGGCTTAGAAGAAATGAAAA
120917848 TCACATTTATGT
66 TCACATTTATGT
120917860 TGT
1 TGT
120917863 AAAACAAAAT
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
76 44 0.56
77 34 0.44
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (77 bp):
TGTTGAATACAAATATATATCCAATACGGAAATACTTTTTTTTCTTGGCTTAGAAGAAATGAAAA
TCACATTTATGT
Found at i:120919877 original size:30 final size:30
Alignment explanation
Indices: 120919843--120919905 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
120919833 ACTTAACAAG
120919843 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
120919873 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
120919903 CAA
1 CAA
120919906 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:120920485 original size:60 final size:61
Alignment explanation
Indices: 120920356--120920486 Score: 144
Period size: 60 Copynumber: 2.2 Consensus size: 61
120920346 TAAGATGCAT
*
120920356 ATTGGTACCTAAGAGTTTTCTTTAGTCCAATTAGGTACTTGAACTTGACTTTAAAGTTCAA
1 ATTGATACCTAAGAGTTTTCTTTAGTCCAATTAGGTACTTGAACTTGACTTTAAAGTTCAA
* * * * **
120920417 TTTAATACCTAA-AGTTTAT-TTTGGTCCAATTAGGTA-TCTGAACTTGGCTTCT-TGGTTCAA
1 ATTGATACCTAAGAGTTT-TCTTTAGTCCAATTAGGTACT-TGAACTTGACTT-TAAAGTTCAA
120920477 ATTGATACCT
1 ATTGATACCT
120920487 CAATTTGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
59 1 0.02
60 46 0.79
61 11 0.19
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.41
Consensus pattern (61 bp):
ATTGATACCTAAGAGTTTTCTTTAGTCCAATTAGGTACTTGAACTTGACTTTAAAGTTCAA
Found at i:120930653 original size:21 final size:21
Alignment explanation
Indices: 120930627--120930671 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
120930617 GTTAATACCA
120930627 TGCTCGAGTCTAAATGTTGTG
1 TGCTCGAGTCTAAATGTTGTG
120930648 TGCTCGAGTCTAAATGTTGTG
1 TGCTCGAGTCTAAATGTTGTG
120930669 TGC
1 TGC
120930672 ATTTATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.38
Consensus pattern (21 bp):
TGCTCGAGTCTAAATGTTGTG
Found at i:120934333 original size:18 final size:18
Alignment explanation
Indices: 120934288--120934337 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
120934278 AAAAATTTCC
120934288 CAAGAATTTTAATATGCTT
1 CAAGAATTTTAA-ATGCTT
* * *
120934307 CTAGTATTTTAAATTCTT
1 CAAGAATTTTAAATGCTT
120934325 CAAGAATTTTAAA
1 CAAGAATTTTAAA
120934338 ATAAACTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (18 bp):
CAAGAATTTTAAATGCTT
Found at i:120936561 original size:11 final size:11
Alignment explanation
Indices: 120936547--120936588 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
120936537 AGCAAAATAG
120936547 CACCAAAACAA
1 CACCAAAACAA
*
120936558 CACCCAAACAA
1 CACCAAAACAA
120936569 CACCAAAACAA
1 CACCAAAACAA
*
120936580 CACCCAAAC
1 CACCAAAAC
120936589 TGCAGCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (11 bp):
CACCAAAACAA
Found at i:120936600 original size:22 final size:22
Alignment explanation
Indices: 120936547--120936588 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
120936537 AGCAAAATAG
120936547 CACCAAAACAACACCCAAACAA
1 CACCAAAACAACACCCAAACAA
120936569 CACCAAAACAACACCCAAAC
1 CACCAAAACAACACCCAAAC
120936589 TGCAGCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (22 bp):
CACCAAAACAACACCCAAACAA
Found at i:120938682 original size:11 final size:11
Alignment explanation
Indices: 120938666--120938695 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
120938656 TTATAGGCAT
120938666 AAGAAGTATAA
1 AAGAAGTATAA
120938677 AAGAAGTATAA
1 AAGAAGTATAA
120938688 AAGAAGTA
1 AAGAAGTA
120938696 GAGATCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (11 bp):
AAGAAGTATAA
Found at i:120939420 original size:2 final size:2
Alignment explanation
Indices: 120939413--120939440 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
120939403 TTGTTTACAA
120939413 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120939441 GTATGTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120940799 original size:16 final size:18
Alignment explanation
Indices: 120940778--120940810 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
120940768 AATACTAGAT
120940778 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
120940794 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
120940811 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:120941493 original size:42 final size:43
Alignment explanation
Indices: 120941387--120941493 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
120941377 CCGCCATTTC
* * *
120941387 GCCTGCTAGGCTCGAAGCCTGATATCATCTCATCGGTATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATCATCTCATCGGCATTACA
* *
120941430 GCCTGCTAGGCCCGAAGCCCGATATCATTTCA-CTGGCATTACA
1 GCCTGCTAGGCTCGAAGCCCGATATCATCTCATC-GGCATTACA
* *
120941473 -CCTGCTAGGCTCAAACCCCGA
1 GCCTGCTAGGCTCGAAGCCCGA
120941494 ATGTCACATT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 19 0.35
43 36 0.65
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCGATATCATCTCATCGGCATTACA
Found at i:120952594 original size:43 final size:42
Alignment explanation
Indices: 120952524--120952647 Score: 162
Period size: 43 Copynumber: 3.0 Consensus size: 42
120952514 AAGTCTAAAC
* *
120952524 TCATTCACCGGCATT-TTGCCTGCTAGGCTTGAAGACCGATA
1 TCATTCACCGGCATTATAGCCTGCTAGGCTCGAAGACCGATA
*
120952565 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCAT-TCACCGGCATTATAGCCTGCTAGGCTCGAAGACCGATA
* * *
120952608 TCATTTCACCGGCATTA-CGCCTGCTAGGCTCAAAGCCCGA
1 TCA-TTCACCGGCATTATAGCCTGCTAGGCTCGAAGACCGA
120952648 ATGTCACATT
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
41 4 0.05
42 32 0.43
43 38 0.51
44 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (42 bp):
TCATTCACCGGCATTATAGCCTGCTAGGCTCGAAGACCGATA
Found at i:120963666 original size:536 final size:534
Alignment explanation
Indices: 120962629--120963669 Score: 1270
Period size: 536 Copynumber: 1.9 Consensus size: 534
120962619 TAAATTAGTG
* * ** * **
120962629 AGCTTTAAAAATAACAGTTGTGATCGTAAATTAGTGGACCGTGAGATTTGTAAAATCTTTTAAGT
1 AGCTTTAAAAATAACAGTTGTGATCATAAATCAAAGGACCGTGAAATTTGTAAAATCTTGCAAGT
* * * *
120962694 AGAAGGTTGTGATCAGAAATCTACTGAAGCTTTTTAGAATGTTCCTTGTATTTTTAAGCAGATCA
66 AGAAGGTCGTGATCAGAAATCTACTGAAGCTTTTCAGAATGTTCCTTATATTTTTAAGCAAATCA
* * * * * * * *
120962759 ATCCATTTCAAGCCTCGTTTTAGACTTATGGCGAATAGAAGTAGCTTCAACCTCACAAAGACAAT
131 ATCCACTTCAAACCTCATTTAAGACATAAGGCGAAAAGAAGTAGATTCAACCTCACAAAGACAAT
*
120962824 GTAACAAAATTGATTTATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGT
196 GTAACAAAATTGATTTATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGC
* * *
120962889 CTATATTCATCATCTCTAGCATCTAATTTGCTCTGAAGGGCAGAGAGGTCAGAATTAACTAGTTG
261 CTATATTCATCATCTCTAGCATCTAACTTGCACTGAAGGGCAGAGAGGTCAGAAGTAACTAGTTG
* * * * * * *
120962954 AAAATCATCTTTGACCTTGCTTAGATCTAGTTCAGCAAATTTACATTCCTTGTGAATAAGTAGTG
326 AAAATCATCTTAGACCATGCTTAGAACGAGTTCAGCAAATTTACATTCCTTGTGAACAAGAAGCG
* * * * * * *
120963019 TTCATGATCGTAAACGAATGAATTGAAGCTGTGATAGTAAATCGATGAGCTTTAAAAATGATAGT
391 TTCAAGATCGTAAACGAATGAACTAAAGCTATGATAGGAAATCGA-GAGCTTTAAAAATGACAAT
* ** * * **
120963084 TGCGATCATAAATTGGTGAACTCTTAATGTAGTTTTTATTATCGTAAATCAATAAACTGATGTCG
455 TACGATCATAAATCAGCGAACTCTTAATGGAGTTTGCA-TATCGTAAATCAATAAACTGATGTCG
120963149 TGTTTGTAAATCAACA
519 TGTTTGTAAATCAACA
* *
120963165 AGCTTTAAAAATGACAGTTGTGATCATAAATCAAAGGACGGTGAAATTTTGTAAAATCTTGCAAG
1 AGCTTTAAAAATAACAGTTGTGATCATAAATCAAAGGACCGTGAAA-TTTGTAAAATCTTGCAAG
* * * *
120963230 TAGAAGGTCGTGATCGGAAATCTACTGAAGCTTTTCAGCATGTTCCTTAT-TTTTTGAGTAAATC
65 TAGAAGGTCGTGATCAGAAATCTACTGAAGCTTTTCAGAATGTTCCTTATATTTTTAAGCAAATC
* * * **
120963294 GATCCACTTCAAACCTCATTTAAGGCATAAGGTGAAAAGAAGTAGATTCCGCCTCACAAAGACAA
130 AATCCACTTCAAACCTCATTTAAGACATAAGGCGAAAAGAAGTAGATTCAACCTCACAAAGACAA
* * *
120963359 TGTAACAAAATTGA-TTACTCTATCCTCCTTTTTTTAAGGTCAGTTTTTAGTTATTCCTCAACAC
195 TGTAACAAAATTGATTTA-TCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTATTCCTCAACAC
* * *
120963423 GCCTATATTCATCATCTCTAGCATCTAACTTGGACTGAAGGGTAGAGAGGTCAGAAGTAGCTAGT
259 GCCTATATTCATCATCTCTAGCATCTAACTTGCACTGAAGGGCAGAGAGGTCAGAAGTAACTAGT
* * **
120963488 TGAAAATTATCTCTAG-CCATGCTTAGAACGAGTTTAGTGAATTTACATTCCTTGTGAAACAAGA
324 TGAAAATCATCT-TAGACCATGCTTAGAACGAGTTCAGCAAATTTACATTCCTTGTG-AACAAGA
* * *
120963552 AGCGTTCAAGATCGTAAATC-AATGAACTAAAG-TCATGATTGGAAATC-AGCAAGCTTTGAAGA
387 AGCGTTCAAGATCGTAAA-CGAATGAACTAAAGCT-ATGATAGGAAATCGAG--AGCTTTAAAAA
** * *
120963614 TGACAATTACGATTGTAAGTCAGCGAACTGTTTAATCGGAG-TTGCA-ATCGTAAATC
448 TGACAATTACGATCATAAATCAGCGAACT-CTTAAT-GGAGTTTGCATATCGTAAATC
120963670 GATGAACTCT
Statistics
Matches: 423, Mismatches: 72, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
535 4 0.01
536 274 0.65
537 133 0.31
538 9 0.02
539 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (534 bp):
AGCTTTAAAAATAACAGTTGTGATCATAAATCAAAGGACCGTGAAATTTGTAAAATCTTGCAAGT
AGAAGGTCGTGATCAGAAATCTACTGAAGCTTTTCAGAATGTTCCTTATATTTTTAAGCAAATCA
ATCCACTTCAAACCTCATTTAAGACATAAGGCGAAAAGAAGTAGATTCAACCTCACAAAGACAAT
GTAACAAAATTGATTTATCTATCCTCCTTCTTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGC
CTATATTCATCATCTCTAGCATCTAACTTGCACTGAAGGGCAGAGAGGTCAGAAGTAACTAGTTG
AAAATCATCTTAGACCATGCTTAGAACGAGTTCAGCAAATTTACATTCCTTGTGAACAAGAAGCG
TTCAAGATCGTAAACGAATGAACTAAAGCTATGATAGGAAATCGAGAGCTTTAAAAATGACAATT
ACGATCATAAATCAGCGAACTCTTAATGGAGTTTGCATATCGTAAATCAATAAACTGATGTCGTG
TTTGTAAATCAACA
Found at i:120964424 original size:570 final size:566
Alignment explanation
Indices: 120963127--120964516 Score: 1511
Period size: 570 Copynumber: 2.4 Consensus size: 566
120963117 TTTTATTATC
* * * * * *
120963127 GTAAATCAATAAACTGATGTCGTGTTTGTAAATCAACAAGCTTTAAAAATGACAGTTGTGATCAT
1 GTAAATCAATGAACTGAAGCCGTGATTGTAAATAAAAAAGCTTTAAAAATGACAGTTGTGATCAT
* * * * * * *
120963192 AAATCAAAGGACGGTGAAATTTTGTAAAA-TCTTGCAAGTAGAAGGTCGTGATCGGAAATCTACT
66 AAATCAACGGACCGTGAGA-TTCGTAAAATTCTT--AAGTAGAAGGTCGTGATTGAAAATCAACT
* * * * * * * * *
120963256 GAAGCTTTTCAGCATGTTCCTTATTTTTTGAGTAAATCGATCCACTTCAAACCTCATTTAAGGCA
128 AAAGCTTTTCAGAATGTTCCTTTTTTTTTGAGCAGATCGATCCATTTCAAGCCTCGTTTCA-G-A
* * * * * *
120963321 TAAGGTGAAAAGAAGTAGATTCCGCCTCACAAAGACAATGTAACAAAATTGATTACTCTATCCTC
191 TAAGGTGAAGATAAGTAGCTTCAGCCTCACAAAGACAATGTAACAAAATTGATTCCTCTATCAT-
* * *
120963386 CTTTTTTTAAGGTCAGTTTTTAGTTATTCCTCAACACGCCTATATTCATCATCTCTAGCATCTAA
255 CTTTTTTCAAGGTCAATTTTGAGTTATTCCTCAACACGCCTATATTCATCATCTCTAGCATCTAA
* * * ** * * * *
120963451 CTTGGACTGAAGGGTAGAGAGGTCAGAAGTAGCTAGTTGAAAATTATCTCTAGCCATGCTTAGAA
320 CTTGCACTAAAAGACAGAGAGGACAAAAGTAGCTAGTTGAAAATCATCTCTAGCCATACTTAGAA
* *** * * * *
120963516 CGAGTTTAGTGAATTTACATTCCTTGTGAAACAAGAAGCGTTCAAGATCGTAAATCAATGAACTA
385 CGAGTTCAACAAATTTACATTCATTGTCAAACAAAAAGCGCTCAAGATCGTAAATCAATGAACTA
* * * *
120963581 AAGTCATGATTGGAAATCAGCAAGCTTTGAAGATGACAATTACGATTGTAAGTCAGCGAACTGTT
450 AAGTCATGATTGGAAATCAACAAGCTTTAAAGATGACAATTACGATAGTAAATCAGCGAACTGTT
** *
120963646 TAATCGGAGTTGCAATCGTAAATCGATGAACTCTTAATGAGTGTTCATGATT
515 TAATCGGAGTTGCAATCGTAAATCGACAAACTCTAAATGAGTGTTCATGATT
* * * * **
120963698 GTAAATCAATGAGCT-ATAGCTGTGATCGTAAATCAACAAAG-TTTAAAAATGACACATGTGATC
1 GTAAATCAATGAACTGA-AGCCGTGATTGTAAAT-AAAAAAGCTTTAAAAATGACAGTTGTGATC
* * * * *
120963761 GTAAATCAACGGACCGTGAGATTC-AAAAATCCTGTAAGTAAAAGGTCGTGATTGAAAATCAGCT
64 ATAAATCAACGGACCGTGAGATTCGTAAAATTCT-TAAGTAGAAGGTCGTGATTGAAAATCAACT
* * *
120963825 AAAGGTTTTCAGAATGATCCTTGTTTTTTTGAACAGATCGATCCATTTCAAGCCTCGTTTCAGTA
128 AAAGCTTTTCAGAATGTTCCTT-TTTTTTTGAGCAGATCGATCCATTTCAAGCCTCGTTTCAG-A
* * *
120963890 GTATGGTGAAGATAAGTAGCTTCAGCTTCACAAAGACAATGTAACAAAATCGATTCCTCTATCAT
191 -TAAGGTGAAGATAAGTAGCTTCAGCCTCACAAAGACAATGTAACAAAATTGATTCCTCTATCAT
* * *
120963955 -TTATCTTTCAATGTCAATTTTGAGTTCTTCTTCAACACGCCTATATTCATCATCTCTAGCATCT
255 CTT-T-TTTCAAGGTCAATTTTGAGTTATTCCTCAACACGCCTATATTCATCATCTCTAGCATCT
* * * *
120964019 AACTTGCTCTAAAAGACAGAGAGGACAAAATTGGCTAGTTGAAAATCATTTCTAGCCATACTTA-
318 AACTTGCACTAAAAGACAGAGAGGACAAAAGTAGCTAGTTGAAAATCATCTCTAGCCATACTTAG
* * * *
120964083 AGGCTAGTTCAACAAATTTACATTCATTGTCAACCAAAAAGTGCTCAAGATCGTAAATCAATGAA
383 A-ACGAGTTCAACAAATTTACATTCATTGTCAAACAAAAAGCGCTCAAGATCGTAAATCAATGAA
* * ** * **
120964148 CTAAAGTCATTATTGGAAATTAATGAGCTTTAAAGATGACAGTTGTGATAGTAAATCAGCGAACT
447 CTAAAGTCATGATTGGAAATCAACAAGCTTTAAAGATGACAATTACGATAGTAAATCAGCGAACT
** * * *
120964213 GTTTAA-CTGGAGTTGTGATTGTAAATCGGCAAACTCTAAATGAAGTGTTCGTGATT
512 GTTTAATC-GGAGTTGCAATCGTAAATCGACAAACTCTAAATG-AGTGTTCATGATT
* * ** *
120964269 GTAAATCAATGAACTGAAGCCGTGATTATAAATTAGTAAGCCTTAAAAATGACAGTTGTGATCAT
1 GTAAATCAATGAACTGAAGCCGTGATTGTAAATAAAAAAGCTTTAAAAATGACAGTTGTGATCAT
* * *
120964334 AAATCAACGGACTGTGAGATTCGTAAAATTCTATAAGTAGAAGGTCGTGATTGTAAACCAACTAA
66 AAATCAACGGACCGTGAGATTCGTAAAATTCT-TAAGTAGAAGGTCGTGATTGAAAATCAACTAA
* * * * *
120964399 AGCTTTTCAGAAAGTTTCTTTTTTTTTTAGCAGATCTATCCATTTCAAGCCTCGCTTCAGACATA
130 AGCTTTTCAGAATGTTCCTTTTTTTTTGAGCAGATCGATCCATTTCAAGCCTCGTTTCAG--ATA
* * * *
120964464 CA-ATGAAGAGT-AGTAGCTTTAGCCTCATAAAGATAATGTAACAAAATTGATTC
193 -AGGTGAAGA-TAAGTAGCTTCAGCCTCACAAAGACAATGTAACAAAATTGATTC
120964517 ATTCCTTCTT
Statistics
Matches: 671, Mismatches: 131, Indels: 34
0.80 0.16 0.04
Matches are distributed among these distances:
568 2 0.00
569 51 0.08
570 337 0.50
571 223 0.33
572 58 0.09
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (566 bp):
GTAAATCAATGAACTGAAGCCGTGATTGTAAATAAAAAAGCTTTAAAAATGACAGTTGTGATCAT
AAATCAACGGACCGTGAGATTCGTAAAATTCTTAAGTAGAAGGTCGTGATTGAAAATCAACTAAA
GCTTTTCAGAATGTTCCTTTTTTTTTGAGCAGATCGATCCATTTCAAGCCTCGTTTCAGATAAGG
TGAAGATAAGTAGCTTCAGCCTCACAAAGACAATGTAACAAAATTGATTCCTCTATCATCTTTTT
TCAAGGTCAATTTTGAGTTATTCCTCAACACGCCTATATTCATCATCTCTAGCATCTAACTTGCA
CTAAAAGACAGAGAGGACAAAAGTAGCTAGTTGAAAATCATCTCTAGCCATACTTAGAACGAGTT
CAACAAATTTACATTCATTGTCAAACAAAAAGCGCTCAAGATCGTAAATCAATGAACTAAAGTCA
TGATTGGAAATCAACAAGCTTTAAAGATGACAATTACGATAGTAAATCAGCGAACTGTTTAATCG
GAGTTGCAATCGTAAATCGACAAACTCTAAATGAGTGTTCATGATT
Found at i:120964816 original size:36 final size:36
Alignment explanation
Indices: 120964726--120964816 Score: 91
Period size: 35 Copynumber: 2.6 Consensus size: 36
120964716 ATGACAATTG
**
120964726 TGATCGTAAATCAACAAACTATTTAATTGAAGTTGC
1 TGATCGTAAATCAAGGAACTATTTAATTGAAGTTGC
* *
120964762 -GATCGTAAATC-GGTGAACTA-TT-ATTGAAGTATTC
1 TGATCGTAAATCAAG-GAACTATTTAATTGAAGT-TGC
120964796 ATGATCGTAAATCAAGGAACT
1 -TGATCGTAAATCAAGGAACT
120964817 GACGTCGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
33 8 0.18
34 4 0.09
35 16 0.36
36 16 0.36
37 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (36 bp):
TGATCGTAAATCAAGGAACTATTTAATTGAAGTTGC
Found at i:120964990 original size:135 final size:133
Alignment explanation
Indices: 120964697--120965010 Score: 324
Period size: 135 Copynumber: 2.3 Consensus size: 133
120964687 AAAAGATTGG
* * * * *
120964697 AAATCAATAAGCTTTAAAGATGACAATTGTGATCGTAAATCAACAAACTATTTAATTGAAGTTGC
1 AAATCAACAAGCTTTAAAAATGAC-ATTGTGATCGTAAATCAGCGAACTATTTAAGTGAAGTTGC
* * * * * * * * *
120964762 GATCGTAAATCGGTGAACTATTATTGAAGTATTCATGATCGTAAATCAAGGAACTGACGTCGTTA
65 AATCATAAATCAGTGAACTATTAATGAAGTATTCATGATCGTAAATCAAGAAACTGAAGCCATGA
**
120964827 TTGT
130 CCGT
* * * * * *
120964831 AAATCAGCGAGCTTTGAAATTGACAGTTGTGATCGTAAATCAGCGAAGTATTTAAAGTGGAGTTG
1 AAATCAACAAGCTTTAAAAATGACA-TTGTGATCGTAAATCAGCGAACTATTT-AAGTGAAGTTG
* * *
120964896 CAATCATAAATCAGTGAACTCTTAATGAAGTGTTCATGATCGTAAATCAATAAACTGAAGCCATG
64 CAATCATAAATCAGTGAACTATTAATGAAGTATTCATGATCGTAAATCAAGAAACTGAAGCCATG
120964961 ACCGT
129 ACCGT
* **
120964966 AAATTAACAAGGC-TTAAAAATGACATATGTGATTATAAATCAGCG
1 AAATCAACAA-GCTTTAAAAATGACAT-TGTGATCGTAAATCAGCG
120965011 GACCATGAGA
Statistics
Matches: 144, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
133 1 0.01
134 43 0.30
135 98 0.68
136 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (133 bp):
AAATCAACAAGCTTTAAAAATGACATTGTGATCGTAAATCAGCGAACTATTTAAGTGAAGTTGCA
ATCATAAATCAGTGAACTATTAATGAAGTATTCATGATCGTAAATCAAGAAACTGAAGCCATGAC
CGT
Found at i:120965863 original size:532 final size:534
Alignment explanation
Indices: 120964912--120965888 Score: 1209
Period size: 532 Copynumber: 1.8 Consensus size: 534
120964902 TAAATCAGTG
* ** *
120964912 AACTCTTAATGAAGTGTTCATGATCGTAAATCAATAAACTGAAGCCATGACCGTAAATTAACAAG
1 AACTCTTAATAAAGTACTCATGATCGTAAATCAATAAACTGAAGCCATGACCGTAAATCAACAAG
* * * * *
120964977 GCTTAAAAATGACATATGTGATTATAAATCAGCGGACCATGAGATTCATATAATATTGTAAGTAG
66 GCTTAAAAATAACATATGTGATAAAAAATCAGCAGACCATGAGATTCATAAAATATTGTAAGTAG
* * * * * * *
120965042 AAAGTTGTGATCGAAAATCAGCTGAAGCTTTTCAGAATGTTCATTATTTTTTTGAGCAAATCGAT
131 --AGTCGAGATCGAAAATCAGCTAAAGCTTTTCAGAAAGTTCATTATTTTTCTAAGCAAATCGAC
* ** * * * * *
120965107 CCATTTCAAGCCTTATTTTAGACGTAGGGTGAAGAGAAATAGATTCAGCCTTACAAAGACAATGT
194 CCATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGATTCAGCCTTACAAAGAAAATAT
* ** * * * *
120965172 GACAAAATTAATTCATCTATCCTCCTTCTTTTAAGGTCAATTTTGAGTTCTTCCTCAACAAGCCT
259 AACAAAATTAATTCATCTATCCTAATTCTTTCAAGGTCAAATTTAAGTTCTTCCTCAACAAGCAT
* * * *
120965237 ATATACATCATCTCTGGCATCTAACTTGGTTTGAAAGGTAGAGAGGTCAGAATTAGCTAGTTGAA
324 ATATACATCATCTCTAGCATCTAACTTGCTCTGAAAGGCAGAGAGGTCAGAATTAGCTAGTTGAA
* ** *
120965302 AATTATCTATTTCCTTCATTAGAACTAGTT-AAGCAAATTTACATTCCTTGTGAACAACAAGTGT
389 AATCATCTATAGCCTACATTAGAACTAGTTCAA-CAAATTTACATTCCTTGTGAACAACAAGTGT
120965366 TCCTGATCGTAAATCAATGAATTGAAGTTGTGATATTAAATCAACGTGATTTAAAAATTACAATT
453 TCCTGATCGTAAATCAATGAATTGAAGTTGTGATATTAAATCAACGTGATTTAAAAATTACAATT
120965431 GCGATCGTCAATCAACA
518 GCGATCGTCAATCAACA
* * *
120965448 AACTCTTAATAAAGTACTCATGATCGTAAATCAATAAACTGAAG-TAGTGATCGTAAATCAGCAA
1 AACTCTTAATAAAGTACTCATGATCGTAAATCAATAAACTGAAGCCA-TGACCGTAAATCAACAA
* * * * *
120965512 -TCTTTAAAAATAACAGT-TTTGATAAAAAATCAGCAGACTATGAGATTCGTAAAATCTTGTAAG
65 GGC-TTAAAAATAACA-TATGTGATAAAAAATCAGCAGACCATGAGATTCATAAAATATTGTAAG
* * * *
120965575 TAG-GTCGAGATTGTAAA-CTAGCTAAAGCTTTTCAGAAAGTTCCTT-TTTTTCTAAGCAGATCG
128 TAGAGTCGAGATCGAAAATC-AGCTAAAGCTTTTCAGAAAGTTCATTATTTTTCTAAGCAAATCG
* * * * *
120965637 ACCCATTTCAAGCCTCGTTCCAGATATACGATGAAGAGCAGTAGCTTCAGCCTTACAAAGAAAAT
192 ACCCATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGATTCAGCCTTACAAAGAAAAT
* * *
120965702 ATAACAACATTAATTTC-TCTATCCTAATTCTTTCAAGGTCAAATTTAAGTTCTTCCTTAACACG
257 ATAACAAAATTAA-TTCATCTATCCTAATTCTTTCAAGGTCAAATTTAAGTTCTTCCTCAACAAG
** * *
120965766 CATATATTTATCATCTCTAGCATCTAACTTGCTCT-AAAGAGCAGAGAGGTCAGAATTTGCTTGT
321 CATATATACATCATCTCTAGCATCTAACTTGCTCTGAAAG-GCAGAGAGGTCAGAATTAGCTAGT
* *
120965830 TGAAAATCATCTGTAGCCATAC-TTAGAACTAGTTCAACAAATTTACATTTCTTGTGAAC
385 TGAAAATCATCTATAGCC-TACATTAGAACTAGTTCAACAAATTTACATTCCTTGTGAAC
120965889 CTGGAAGTGT
Statistics
Matches: 368, Mismatches: 65, Indels: 20
0.81 0.14 0.04
Matches are distributed among these distances:
531 4 0.01
532 214 0.58
533 40 0.11
535 2 0.01
536 107 0.29
537 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (534 bp):
AACTCTTAATAAAGTACTCATGATCGTAAATCAATAAACTGAAGCCATGACCGTAAATCAACAAG
GCTTAAAAATAACATATGTGATAAAAAATCAGCAGACCATGAGATTCATAAAATATTGTAAGTAG
AGTCGAGATCGAAAATCAGCTAAAGCTTTTCAGAAAGTTCATTATTTTTCTAAGCAAATCGACCC
ATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGATTCAGCCTTACAAAGAAAATATAA
CAAAATTAATTCATCTATCCTAATTCTTTCAAGGTCAAATTTAAGTTCTTCCTCAACAAGCATAT
ATACATCATCTCTAGCATCTAACTTGCTCTGAAAGGCAGAGAGGTCAGAATTAGCTAGTTGAAAA
TCATCTATAGCCTACATTAGAACTAGTTCAACAAATTTACATTCCTTGTGAACAACAAGTGTTCC
TGATCGTAAATCAATGAATTGAAGTTGTGATATTAAATCAACGTGATTTAAAAATTACAATTGCG
ATCGTCAATCAACA
Found at i:120966007 original size:532 final size:533
Alignment explanation
Indices: 120964893--120966010 Score: 1141
Period size: 532 Copynumber: 2.1 Consensus size: 533
120964883 TAAAGTGGAG
* * *
120964893 TTGCAATCATAAATCAGTGAACTCTTAATGAAGTGTTCATGATCGTAAATCAATAAACTGAAGCC
1 TTGCAATCGTAAATCAGTGAACTCTTAAT-TAGAGTTCATGATCGTAAATCAATAAACTGAAGCC
* * * * *
120964958 ATGACCGTAAATTAACAAGGCTTAAAAATGACATATGTGATTATAAATCAGCGGACCATGAGATT
65 ATGACCGTAAATCAACAAGGCTTAAAAATAACATATGTGATAAAAAATCAGCAGACCATGAGATT
* * * * *
120965023 CATATAATATTGTAAGTAGAAAGTTGTGATCGAAAATCAGCTGAAGCTTTTCAGAATGTTCATTA
130 CATAAAATATTGTAAGTAG--AGTCGAGATCGAAAATCAGCTAAAGCTTTTCAGAAAGTTCATTA
* * * * ** * * *
120965088 TTTTTTTGAGCAAATCGATCCATTTCAAGCCTTATTTTAGACGTAGGGTGAAGAGAAATAGATTC
193 TTTTTCTAAGCAAATCGACCCATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGATTC
* * * ** * * *
120965153 AGCCTTACAAAGACAATGTGACAAAATTAATTCATCTATCCTCCTTCTTTTAAGGTCAATTTTGA
258 AGCCTTACAAAGAAAATATAACAAAATTAATTCATCTATCCTAATTCTTTCAAGGTCAAATTTAA
* * * * *
120965218 GTTCTTCCTCAACAAGCCTATATACATCATCTCTGGCATCTAACTTGGTTTGAAAGGTAGAGAGG
323 GTTCTTCCTCAACAAGCATATATACATCATCTCTAGCATCTAACTTGCTCTGAAAGGCAGAGAGG
* ** *
120965283 TCAGAATTAGCTAGTTGAAAATTATCTATTTCCTTCATTAGAACTAGTTAAGCAAATTTACATTC
388 TCAGAATTAGCTAGTTGAAAATCATCTATAGCCTACATTAGAACTAGTTAAGCAAATTTACATTC
*** * * * * ** *
120965348 CTTGTGAACAACAAGTGTTCCTGATCGTAAATCAATGAATTGAAGTTGTGATATTAAATCAACGT
453 CTTGTGAACAACAAGTGTTAAAGATCATAAATCAATGAACTAAAGCTAAGATATGAAATCAACGT
* *
120965413 GATTTAAAAATTACAA
518 GATTGAAAAATGACAA
* * *** *
120965429 TTGCGATCGTCAATCAACAAACTCTTAA-TAAAGTACTCATGATCGTAAATCAATAAACTGAAG-
1 TTGCAATCGTAAATCAGTGAACTCTTAATTAGAGT--TCATGATCGTAAATCAATAAACTGAAGC
* * * * * *
120965492 TAGTGATCGTAAATCAGCAA-TCTTTAAAAATAACAGT-TTTGATAAAAAATCAGCAGACTATGA
64 CA-TGACCGTAAATCAACAAGGC-TTAAAAATAACA-TATGTGATAAAAAATCAGCAGACCATGA
* * * * *
120965555 GATTCGTAAAATCTTGTAAGTAG-GTCGAGATTGTAAA-CTAGCTAAAGCTTTTCAGAAAGTTCC
126 GATTCATAAAATATTGTAAGTAGAGTCGAGATCGAAAATC-AGCTAAAGCTTTTCAGAAAGTTCA
* * * * * *
120965618 TT-TTTTTCTAAGCAGATCGACCCATTTCAAGCCTCGTTCCAGATATACGATGAAGAGCAGTAGC
190 TTATTTTTCTAAGCAAATCGACCCATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGA
*
120965682 TTCAGCCTTACAAAGAAAATATAACAACATTAATTTC-TCTATCCTAATTCTTTCAAGGTCAAAT
255 TTCAGCCTTACAAAGAAAATATAACAAAATTAA-TTCATCTATCCTAATTCTTTCAAGGTCAAAT
* * **
120965746 TTAAGTTCTTCCTTAACACGCATATATTTATCATCTCTAGCATCTAACTTGCTCT-AAAGAGCAG
319 TTAAGTTCTTCCTCAACAAGCATATATACATCATCTCTAGCATCTAACTTGCTCTGAAAG-GCAG
* * *
120965810 AGAGGTCAGAATTTGCTTGTTGAAAATCATCTGTAGCCATAC-TTAGAACTAGTTCAA-CAAATT
383 AGAGGTCAGAATTAGCTAGTTGAAAATCATCTATAGCC-TACATTAGAACTAGTT-AAGCAAATT
* ***
120965873 TACATTTCTTGTGAACCTGGAAGTGTTAAAGATCATAAATCAATGAACTAAAGCTAAGAT-TGGA
446 TACATTCCTTGTGAA-CAACAAGTGTTAAAGATCATAAATCAATGAACTAAAGCTAAGATAT-GA
* *
120965937 AATC-A-GTGAGGTTGAAAGATGGCAA
509 AATCAACGTGA--TTGAAAAATGACAA
* * * *
120965962 TTGTAATTGTAAATCAGTGAACTGTTTAATTAGAGTT-ACGATCGTAAAT
1 TTGCAATCGTAAATCAGTGAACT-CTTAATTAGAGTTCATGATCGTAAAT
120966011 TTGTGTACTA
Statistics
Matches: 468, Mismatches: 98, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
531 8 0.02
532 226 0.48
533 104 0.22
534 7 0.01
535 7 0.01
536 115 0.25
537 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (533 bp):
TTGCAATCGTAAATCAGTGAACTCTTAATTAGAGTTCATGATCGTAAATCAATAAACTGAAGCCA
TGACCGTAAATCAACAAGGCTTAAAAATAACATATGTGATAAAAAATCAGCAGACCATGAGATTC
ATAAAATATTGTAAGTAGAGTCGAGATCGAAAATCAGCTAAAGCTTTTCAGAAAGTTCATTATTT
TTCTAAGCAAATCGACCCATTTCAAGCCTCATTCCAGACATACGATGAAGAGAAATAGATTCAGC
CTTACAAAGAAAATATAACAAAATTAATTCATCTATCCTAATTCTTTCAAGGTCAAATTTAAGTT
CTTCCTCAACAAGCATATATACATCATCTCTAGCATCTAACTTGCTCTGAAAGGCAGAGAGGTCA
GAATTAGCTAGTTGAAAATCATCTATAGCCTACATTAGAACTAGTTAAGCAAATTTACATTCCTT
GTGAACAACAAGTGTTAAAGATCATAAATCAATGAACTAAAGCTAAGATATGAAATCAACGTGAT
TGAAAAATGACAA
Found at i:120967350 original size:134 final size:134
Alignment explanation
Indices: 120967208--120967454 Score: 343
Period size: 134 Copynumber: 1.8 Consensus size: 134
120967198 CAAAGTTACA
* *
120967208 ATCGTAAATCGACGAACTCTTAATGAAATATTCATGATCGTAAATCAAAGAACTAAAGCCGTT-A
1 ATCGTAAATCAACGAACTCATAATGAAATATTCATGATCGTAAATCAAAGAACTAAAGCC-TTAA
* * * *
120967272 TTGTAAATCATCAAGCTTTGAAAATGAAAGTTGTGATCGTAAATTAGCAAAGTGTTCAAGTGGAG
65 TTGTAAATCACCAAGCTTTAAAAATGAAAGTTGTGAACGTAAATCAGCAAAGTGTTCAAGTGGAG
120967337 TTGCG
130 TTGCG
* * * * * *
120967342 ATCGTAAATCAACGAACTCATAATTAAGTTTTCATGATCGTAAATCAATGAATTGAAGCCTTAAT
1 ATCGTAAATCAACGAACTCATAATGAAATATTCATGATCGTAAATCAAAGAACTAAAGCCTTAAT
* * *
120967407 TGTAAATCCCCGAGCTTTAAAAATGACAGTTGTGAACGTAAATCAGCA
66 TGTAAATCACCAAGCTTTAAAAATGAAAGTTGTGAACGTAAATCAGCA
120967455 GACCGTGAGA
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
133 2 0.02
134 95 0.98
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (134 bp):
ATCGTAAATCAACGAACTCATAATGAAATATTCATGATCGTAAATCAAAGAACTAAAGCCTTAAT
TGTAAATCACCAAGCTTTAAAAATGAAAGTTGTGAACGTAAATCAGCAAAGTGTTCAAGTGGAGT
TGCG
Found at i:120969176 original size:2 final size:2
Alignment explanation
Indices: 120969171--120969202 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
120969161 ACACACACAC
120969171 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120969203 TTCGTGCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120969477 original size:39 final size:39
Alignment explanation
Indices: 120969434--120969538 Score: 174
Period size: 39 Copynumber: 2.7 Consensus size: 39
120969424 TCCCAACACG
* * * *
120969434 TAGCCTGTGGACCTCAAGTCCAGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
120969473 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
120969512 TAGCCTGCGGATCTCATGTCCGGATAT
1 TAGCCTGCGGATCTCATGTCCGGATAT
120969539 TTCCAATCTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (39 bp):
TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
Found at i:120970626 original size:16 final size:16
Alignment explanation
Indices: 120970605--120970635 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120970595 GATATTTTAA
120970605 TATATTATATTAATAT
1 TATATTATATTAATAT
*
120970621 TATATTATGTTAATA
1 TATATTATATTAATA
120970636 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:120970732 original size:12 final size:12
Alignment explanation
Indices: 120970715--120970745 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
120970705 GAAGCAGGGG
120970715 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
120970727 AGAAAAAGGGAA
1 AGAAAAAGAGAA
120970739 AGAAAAA
1 AGAAAAA
120970746 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:120984212 original size:29 final size:29
Alignment explanation
Indices: 120984150--120984252 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
120984140 TACTCGATTT
**** * *
120984150 CGCACACTTAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
120984179 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
120984208 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
120984237 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
120984253 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:120987954 original size:16 final size:16
Alignment explanation
Indices: 120987933--120987963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120987923 GATATTTTAA
120987933 TATATTATATTAATAT
1 TATATTATATTAATAT
*
120987949 TATATTATGTTAATA
1 TATATTATATTAATA
120987964 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:120988060 original size:12 final size:12
Alignment explanation
Indices: 120988043--120988073 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
120988033 GAAGCAGGGG
120988043 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
120988055 AGAAAAAGGGAA
1 AGAAAAAGAGAA
120988067 AGAAAAA
1 AGAAAAA
120988074 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:120997849 original size:39 final size:39
Alignment explanation
Indices: 120997826--120997930 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
120997816 TCCCAGCACG
* *
120997826 TAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
120997865 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
120997904 TAGCCTGCGGATCTCATGTCCGGATAT
1 TAGCCTGCGGATCTCATGTCCGGATAT
120997931 TTCCAATCTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (39 bp):
TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
Found at i:121009974 original size:13 final size:13
Alignment explanation
Indices: 121009956--121009986 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
121009946 TTCTTGTAAA
121009956 CATTTCATACAAC
1 CATTTCATACAAC
*
121009969 CATTTCATATAAC
1 CATTTCATACAAC
121009982 CATTT
1 CATTT
121009987 GTCATCTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (13 bp):
CATTTCATACAAC
Found at i:121010144 original size:46 final size:47
Alignment explanation
Indices: 121010074--121010528 Score: 563
Period size: 46 Copynumber: 9.9 Consensus size: 47
121010064 TTTGACATGA
* * * * * *
121010074 TGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
*
121010120 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
*
121010166 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
* ** *
121010212 TGCCATGGTATCTTTCAACCATGTTCTTATTCA-TTTCCCGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
* *
121010258 TGCCATAGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
** * **
121010304 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTTACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
* **
121010350 TACCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
*
121010396 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
** * * * *
121010442 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTCCATATAATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
121010488 TGCCATGGTATCTTTCAACCATGGTCTTA--CATATTTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTTCATGT
121010529 GACAGCCCTA
Statistics
Matches: 361, Mismatches: 40, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
44 2 0.01
45 5 0.01
46 354 0.98
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGT
Found at i:121010524 original size:138 final size:138
Alignment explanation
Indices: 121010074--121010516 Score: 679
Period size: 138 Copynumber: 3.2 Consensus size: 138
121010064 TTTGACATGA
* * * * * * * *
121010074 TGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATCTTTCAAC
**
121010139 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
66 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
121010204 TGTCACGC
131 TGTAACGC
* * *
121010212 TGCCATGGTATCTTTCAACCATGTTCTTATTCATTTCCCGTCACATTGCCATAGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATCTTTCAAC
**
121010277 CATGGTCTTATTCTTTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
* *
121010342 TGTTACAC
131 TGTAACGC
*
121010350 TACCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATCTTTCAAC
*
121010415 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCA
66 CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
* * *
121010480 TATAATGT
131 TGTAACGC
121010488 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
121010517 CATATTTCAT
Statistics
Matches: 275, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 275 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCTTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TGTAACGC
Found at i:121012993 original size:49 final size:49
Alignment explanation
Indices: 121012934--121013176 Score: 405
Period size: 49 Copynumber: 4.8 Consensus size: 49
121012924 ATATGTATAC
*
121012934 AAGGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
121012983 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
121013032 AAGGCCTAATGGCCAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
1 AAGGCC---T----AATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
121013088 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
*
121013137 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
121013177 CTATATATGT
Statistics
Matches: 185, Mismatches: 2, Indels: 14
0.92 0.01 0.07
Matches are distributed among these distances:
49 135 0.73
52 1 0.01
53 1 0.01
56 48 0.26
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGAT
Found at i:121013109 original size:105 final size:106
Alignment explanation
Indices: 121012936--121013150 Score: 414
Period size: 105 Copynumber: 2.0 Consensus size: 106
121012926 ATGTATACAA
121012936 GGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
121013001 TGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
66 TGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
*
121013042 GGCC-AATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
121013106 TGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
66 TGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
121013147 GGCC
1 GGCC
121013151 GATGTGATGA
Statistics
Matches: 108, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
105 104 0.96
106 4 0.04
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (106 bp):
GGCCTAATGGCCGATGTGATGAATGTAAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
Found at i:121013306 original size:37 final size:36
Alignment explanation
Indices: 121013251--121013337 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
121013241 AATTTGGAAA
121013251 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
121013289 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
121013326 TATGTCCGGGTA
1 TATGTCCGGGTA
121013338 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:121016637 original size:11 final size:11
Alignment explanation
Indices: 121016621--121016668 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
121016611 CTTTATATAC
121016621 TAATAAAATAA
1 TAATAAAATAA
*
121016632 TAATAAAATATCT
1 TAATAAAATA--A
* *
121016645 TATTAAAATAT
1 TAATAAAATAA
121016656 TAATAAAATAA
1 TAATAAAATAA
121016667 TA
1 TA
121016669 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:121017336 original size:99 final size:98
Alignment explanation
Indices: 121017154--121017374 Score: 271
Period size: 99 Copynumber: 2.2 Consensus size: 98
121017144 CAATTTATTT
* ** * * * *
121017154 AAATGAAGTTGTGATCGTAAATTGGTGAACTCTTAATGAAGTTTTTATGATTGTAAATCAATTAA
1 AAATGAAGTTGTGATCGTAAATCGGCAAACTCTTAATGAACTATTTATGATCGTAAATCAATGAA
* * *
121017219 CTGAAGCCTTGATCGTAAATTAGCAAGCTTTAA
66 CTGAAGCCATGATCGTAAATCAGCAAGCTTGAA
* * *
121017252 AAATGATAGTTGTGATAGTAAATCGGCAAACTTTTAATGTACTATTTATGATCGTAAATCAATGA
1 AAATGA-AGTTGTGATCGTAAATCGGCAAACTCTTAATGAACTATTTATGATCGTAAATCAATGA
* * * *
121017317 ACTTAAGCCATGTTTGTAAATCAGCGAGCTTGAA
65 ACTGAAGCCATGATCGTAAATCAGCAAGCTTGAA
121017351 AAATGACAGTTGTGATCGTAAATC
1 AAATGA-AGTTGTGATCGTAAATC
121017375 AACGGACTAT
Statistics
Matches: 103, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
98 6 0.06
99 97 0.94
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (98 bp):
AAATGAAGTTGTGATCGTAAATCGGCAAACTCTTAATGAACTATTTATGATCGTAAATCAATGAA
CTGAAGCCATGATCGTAAATCAGCAAGCTTGAA
Found at i:121019797 original size:55 final size:55
Alignment explanation
Indices: 121019738--121019847 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
121019728 TTACTTTTCG
121019738 ATGAAGATTGATTCCAATATTAAGAATTAACTTGTCTATAAAGGGTTTTTTTTTT
1 ATGAAGATTGATTCCAATATTAAGAATTAACTTGTCTATAAAGGGTTTTTTTTTT
**
121019793 ATGAAGATTGATTCCAATATTAAGAATTAACTTGTCTATAAAGTTTTTTTTTTTT
1 ATGAAGATTGATTCCAATATTAAGAATTAACTTGTCTATAAAGGGTTTTTTTTTT
121019848 TTTTATGAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (55 bp):
ATGAAGATTGATTCCAATATTAAGAATTAACTTGTCTATAAAGGGTTTTTTTTTT
Found at i:121020288 original size:25 final size:26
Alignment explanation
Indices: 121020260--121020323 Score: 93
Period size: 23 Copynumber: 2.7 Consensus size: 26
121020250 CAACTTAAAC
121020260 TTAA-TAATATTATATATTTAGAATT
1 TTAACTAATATTATATATTTAGAATT
121020285 TTAACT-A-ATT-TATATTTAGAATT
1 TTAACTAATATTATATATTTAGAATT
121020308 TTAACTAAT-TTATATA
1 TTAACTAATATTATATA
121020324 ATAAATGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
23 19 0.54
24 6 0.17
25 9 0.26
26 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (26 bp):
TTAACTAATATTATATATTTAGAATT
Found at i:121020302 original size:23 final size:23
Alignment explanation
Indices: 121020272--121020322 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
121020262 AATAATATTA
121020272 TATATTTAGAATTTTAACTAATT
1 TATATTTAGAATTTTAACTAATT
121020295 TATATTTAGAATTTTAACTAATT
1 TATATTTAGAATTTTAACTAATT
121020318 TATAT
1 TATAT
121020323 AATAAATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (23 bp):
TATATTTAGAATTTTAACTAATT
Found at i:121021340 original size:5 final size:6
Alignment explanation
Indices: 121021323--121021347 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121021313 GTGTTTCCAC
121021323 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
121021348 TTGTTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:121026139 original size:93 final size:93
Alignment explanation
Indices: 121026012--121026184 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
121026002 CGCCCATAAG
* * *
121026012 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
121026077 ACGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
121026105 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
*
121026170 ACGAGTTCAGATGCC
66 ACGAGCTCAGATGCC
121026185 CAAATATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:121026177 original size:46 final size:46
Alignment explanation
Indices: 121026005--121026174 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
121025995 TGTAACCCGC
* * *
121026005 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
* *
121026051 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--GAC--GTTCACAT
* *
121026101 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
*
121026144 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
121026175 TTCAGATGCC
Statistics
Matches: 105, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 2 0.02
46 56 0.53
47 26 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:121028944 original size:30 final size:29
Alignment explanation
Indices: 121028902--121028958 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
121028892 AAAGATAACA
*
121028902 AGAAAACCGAATAAAAAAATTCAAGATTG
1 AGAAAACCGAATAAAAAAATCCAAGATTG
* *
121028931 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAAAAATCCAAGAT
121028959 ACGATACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.58, C:0.14, G:0.14, T:0.14
Consensus pattern (29 bp):
AGAAAACCGAATAAAAAAATCCAAGATTG
Done.